visual-rag-toolkit 0.1.1__py3-none-any.whl

benchmarks/README.md

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+# ViDoRe Benchmark Evaluation
+
+This directory contains scripts for evaluating visual document retrieval on the [ViDoRe benchmark](https://huggingface.co/spaces/vidore/vidore-leaderboard).
+
+## Quick Start
+
+### 1. Install Dependencies
+
+```bash
+# Install visual-rag-toolkit with all dependencies
+pip install -e ".[all]"
+
+# Install benchmark-specific dependencies
+pip install datasets mteb
+```
+
+### 2. Run Evaluation
+
+```bash
+# Run on single dataset
+python benchmarks/run_vidore.py --dataset vidore/docvqa_test_subsampled
+
+# Run on all ViDoRe datasets
+python benchmarks/run_vidore.py --all
+
+# With two-stage retrieval (our contribution)
+python benchmarks/run_vidore.py --dataset vidore/docvqa_test_subsampled --two-stage
+```
+
+### 3. Submit to Leaderboard
+
+```bash
+# Generate submission file
+python benchmarks/prepare_submission.py --results results/
+
+# Submit to HuggingFace
+huggingface-cli login
+huggingface-cli upload vidore/results ./submission.json
+```
+
+## ViDoRe Datasets
+
+The benchmark includes these datasets (from the leaderboard):
+
+| Dataset | Type | # Queries | # Documents |
+|---------|------|-----------|-------------|
+| docvqa_test_subsampled | DocVQA | ~500 | ~5,000 |
+| infovqa_test_subsampled | InfoVQA | ~500 | ~5,000 |
+| tabfquad_test_subsampled | TabFQuAD | ~500 | ~5,000 |
+| tatdqa_test | TAT-DQA | ~1,500 | ~2,500 |
+| arxivqa_test_subsampled | ArXivQA | ~500 | ~5,000 |
+| shiftproject_test | SHIFT | ~500 | ~5,000 |
+
+## Evaluation Metrics
+
+- **NDCG@5**: Normalized Discounted Cumulative Gain at 5
+- **NDCG@10**: Normalized Discounted Cumulative Gain at 10  
+- **MRR@10**: Mean Reciprocal Rank at 10
+- **Recall@5**: Recall at 5
+- **Recall@10**: Recall at 10
+
+## Two-Stage Retrieval (Our Contribution)
+
+Our key contribution is efficient two-stage retrieval:
+
+```
+Stage 1: Fast prefetch with tile-level pooled vectors
+         Uses HNSW index for O(log N) retrieval
+         
+Stage 2: Exact MaxSim reranking on top-K candidates
+         Full multi-vector scoring for precision
+```
+
+This provides:
+- **5-10x speedup** over full MaxSim at scale
+- **95%+ accuracy** compared to exhaustive search
+- **Memory efficient** (don't load all embeddings upfront)
+
+To evaluate with two-stage:
+
+```bash
+python benchmarks/run_vidore.py \
+    --dataset vidore/docvqa_test_subsampled \
+    --two-stage \
+    --prefetch-k 200 \
+    --top-k 10
+```
+
+## Files
+
+- `run_vidore.py` - Main evaluation script
+- `prepare_submission.py` - Generate leaderboard submission
+- `analyze_results.py` - Analyze and compare results
+
+
+
+
+
+
+
+

benchmarks/__init__.py

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+"""
+Benchmark utilities and dataset loaders used by the demo UI.
+
+Note: The `benchmarks/` folder is primarily for research/evaluation scripts, but the
+Streamlit demo imports some loaders/metrics from here. Making this directory a
+package (via `__init__.py`) ensures imports like `benchmarks.vidore_tatdqa_test`
+work in Docker/Spaces environments.
+"""
+
+__all__ = []
+

benchmarks/analyze_results.py

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+#!/usr/bin/env python3
+"""
+Analyze and compare benchmark results.
+
+Usage:
+    # Compare exhaustive vs two-stage
+    python analyze_results.py --results results/
+    
+    # Compare multiple models
+    python analyze_results.py --dirs results_colsmol/ results_colpali/
+"""
+
+import argparse
+import json
+from pathlib import Path
+from typing import Dict, List, Any
+
+import numpy as np
+
+
+def load_all_results(results_dir: Path) -> Dict[str, Dict]:
+    """Load all result files from directory."""
+    results = {}
+    for f in results_dir.glob("*.json"):
+        with open(f) as fp:
+            data = json.load(fp)
+        
+        # Key by dataset + method
+        dataset = data.get("dataset", f.stem).split("/")[-1]
+        method = "two_stage" if data.get("two_stage") else "exhaustive"
+        key = f"{dataset}_{method}"
+        
+        results[key] = {
+            "dataset": dataset,
+            "method": method,
+            "model": data.get("model", "unknown"),
+            **data.get("metrics", {}),
+        }
+    return results
+
+
+def compare_methods(results: Dict[str, Dict]) -> None:
+    """Compare exhaustive vs two-stage on same datasets."""
+    
+    # Group by dataset
+    datasets = {}
+    for key, data in results.items():
+        ds = data["dataset"].replace("_twostage", "")
+        if ds not in datasets:
+            datasets[ds] = {}
+        datasets[ds][data["method"]] = data
+    
+    print("\n" + "=" * 80)
+    print("EXHAUSTIVE vs TWO-STAGE COMPARISON")
+    print("=" * 80)
+    
+    print(f"\n{'Dataset':<30} {'Method':<12} {'NDCG@10':>10} {'MRR@10':>10} {'Time(ms)':>10}")
+    print("-" * 72)
+    
+    improvements = []
+    speedups = []
+    
+    for dataset, methods in sorted(datasets.items()):
+        for method in ["exhaustive", "two_stage"]:
+            if method in methods:
+                m = methods[method]
+                time_ms = m.get("avg_search_time_ms", 0)
+                print(f"{dataset:<30} {method:<12} {m.get('ndcg@10', 0):>10.4f} {m.get('mrr@10', 0):>10.4f} {time_ms:>10.2f}")
+        
+        # Calculate improvement
+        if "exhaustive" in methods and "two_stage" in methods:
+            ex = methods["exhaustive"]
+            ts = methods["two_stage"]
+            
+            ndcg_diff = ts.get("ndcg@10", 0) - ex.get("ndcg@10", 0)
+            improvements.append(ndcg_diff)
+            
+            ex_time = ex.get("avg_search_time_ms", 1)
+            ts_time = ts.get("avg_search_time_ms", 1)
+            if ts_time > 0:
+                speedups.append(ex_time / ts_time)
+        
+        print()
+    
+    # Summary
+    if improvements:
+        print("-" * 72)
+        print(f"Average NDCG@10 difference (two_stage - exhaustive): {np.mean(improvements):+.4f}")
+        print(f"Retention rate: {100 * (1 + np.mean(improvements)):.1f}%")
+    
+    if speedups:
+        print(f"Average speedup: {np.mean(speedups):.1f}x")
+
+
+def analyze_stage1_recall(results: Dict[str, Dict]) -> None:
+    """Analyze how well stage 1 preserves relevant documents."""
+    print("\n" + "=" * 80)
+    print("STAGE 1 RECALL ANALYSIS")
+    print("=" * 80)
+    print("\n(Stage 1 recall = how often relevant doc is in prefetch candidates)")
+    print("This requires detailed results with stage1_rank info - run with --detailed")
+
+
+def print_leaderboard(results: Dict[str, Dict]) -> None:
+    """Print results in leaderboard format."""
+    print("\n" + "=" * 80)
+    print("LEADERBOARD FORMAT")
+    print("=" * 80)
+    
+    # Best result per dataset
+    best = {}
+    for key, data in results.items():
+        ds = data["dataset"].replace("_twostage", "")
+        ndcg = data.get("ndcg@10", 0)
+        if ds not in best or ndcg > best[ds].get("ndcg@10", 0):
+            best[ds] = data
+    
+    # Compute average
+    ndcg_scores = [d.get("ndcg@10", 0) for d in best.values()]
+    avg = sum(ndcg_scores) / len(ndcg_scores) if ndcg_scores else 0
+    
+    print(f"\nModel: {list(results.values())[0].get('model', 'unknown')}")
+    print(f"\n{'Dataset':<35} {'NDCG@10':>10}")
+    print("-" * 45)
+    
+    for ds, data in sorted(best.items()):
+        method_tag = " (2-stage)" if data.get("method") == "two_stage" else ""
+        print(f"{ds + method_tag:<35} {data.get('ndcg@10', 0):>10.4f}")
+    
+    print("-" * 45)
+    print(f"{'AVERAGE':<35} {avg:>10.4f}")
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Analyze benchmark results")
+    parser.add_argument(
+        "--results", type=str, default="results",
+        help="Results directory"
+    )
+    parser.add_argument(
+        "--dirs", nargs="+",
+        help="Multiple result directories to compare"
+    )
+    parser.add_argument(
+        "--compare", action="store_true",
+        help="Compare exhaustive vs two-stage"
+    )
+    parser.add_argument(
+        "--leaderboard", action="store_true",
+        help="Print in leaderboard format"
+    )
+    
+    args = parser.parse_args()
+    
+    if args.dirs:
+        # Compare multiple directories
+        all_results = {}
+        for d in args.dirs:
+            results = load_all_results(Path(d))
+            for k, v in results.items():
+                all_results[f"{d}_{k}"] = v
+        results = all_results
+    else:
+        results = load_all_results(Path(args.results))
+    
+    if not results:
+        print(f"❌ No results found")
+        return
+    
+    print(f"📊 Loaded {len(results)} result files")
+    
+    if args.compare or not args.leaderboard:
+        compare_methods(results)
+    
+    if args.leaderboard or not args.compare:
+        print_leaderboard(results)
+
+
+if __name__ == "__main__":
+    main()
+
+
+
+
+
+
+

benchmarks/benchmark_datasets.txt

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+Option A vs Option B (Visual RAG Toolkit benchmarking datasets/protocols)
+
+Goal
+- Evaluate ColPali/ColSmol-style visual document retrieval with:
+  - single-stage full late-interaction MaxSim (query tokens vs doc tokens)
+  - two-stage retrieval (stage-1 cheap prefetch, stage-2 full MaxSim rerank)
+- Use Qdrant-backed evaluation for “real world” behavior (ANN prefetch + vector fetch costs).
+
+
+Vocabulary: DocVQA / InfoVQA / TabFQuAD / TAT-DQA / ArXivQA / SHIFT
+- These names refer to “task families” / subsets in the ViDoRe benchmark.
+- In this repo we currently reference them as HuggingFace datasets like:
+  - vidore/docvqa_test_subsampled
+  - vidore/infovqa_test_subsampled
+  - vidore/tabfquad_test_subsampled
+  - vidore/tatdqa_test
+  - vidore/arxivqa_test_subsampled
+  - vidore/shiftproject_test
+- Important: These are still “ViDoRe benchmark datasets” (not completely unrelated external datasets),
+  but they are derived from those task domains.
+
+
+What is “qrels mapping”?
+- qrels = query relevance labels used by IR metrics (NDCG/MRR/Recall).
+- Concretely: a mapping like:
+    qrels[query_id] = {doc_id_1: relevance, doc_id_2: relevance, ...}
+- In a correct shared-corpus benchmark, doc_id refers to an item in a corpus (pages/images),
+  and query_id refers to a query/question; qrels tells which corpus items are relevant.
+
+
+Option A: Official ViDoRe protocol (recommended for paper comparability)
+What it means
+- Evaluate each ViDoRe dataset using the “official” definition of:
+  - query set
+  - corpus (shared across queries)
+  - qrels (relevance mapping from queries to corpus items)
+  - metrics (NDCG@K, MRR@K, Recall@K as reported by the benchmark)
+- Results are directly comparable to other systems and can be reported as “ViDoRe benchmark results”.
+
+Why it matters
+- Strongest credibility and easiest to defend in a paper.
+- Minimizes reviewer skepticism about custom evaluation.
+
+Notes about THIS repo today
+- The current script `benchmarks/run_vidore.py` DOES NOT implement the official shared-corpus protocol.
+  It currently constructs an artificial 1:1 regime:
+    - query_id = q_{idx}
+    - doc_id   = d_{idx}
+    - qrels[q_{idx}] = {d_{idx}: 1}
+  This makes the “corpus size” equal to the number of examples and makes each doc relevant to only one query.
+- For Option A, we should later update the benchmark pipeline to:
+  1) load the official corpus + query split for each dataset
+  2) index the corpus into Qdrant using visual-rag-toolkit indexing (vectors: initial, mean_pooling, global_pooling)
+  3) run retrieval against Qdrant (not in-memory NumPy)
+  4) compute official metrics using qrels
+
+Implementation checklist for later (Option A)
+- Determine the true ViDoRe dataset schema for each subset:
+  - Which fields identify the query?
+  - Which fields identify the relevant document/page id?
+  - Is the corpus provided as a separate split/file/dataset?
+- Ensure consistent doc_id keys across:
+  - indexing pipeline ids
+  - qrels doc ids
+- Ensure we don’t “leak” query-paired doc only; we must have a shared corpus per dataset.
+
+
+Option B: Custom “scale-stress” protocol (not leaderboard-comparable)
+What it means
+- Build a larger shared corpus to stress scalability and show the value of two-stage retrieval.
+- A practical version using only ViDoRe subsets:
+  - Merge corpora from multiple ViDoRe subsets into one larger corpus
+    e.g. corpus = DocVQA corpus + InfoVQA corpus + TabFQuAD corpus + ...
+  - Run queries from one subset (or all subsets) against the merged corpus.
+  - Keep qrels pointing to the original relevant doc ids (those docs now still exist in the merged corpus).
+
+Why it matters
+- Produces “latency vs corpus size” curves and “quality retention vs prefetch_k” curves
+  that better reflect production deployments (thousands → millions of pages).
+
+Tradeoffs
+- Not directly comparable to the official ViDoRe leaderboard.
+- Must be explicitly described as a custom scaling experiment in the paper.
+
+Custom qrels mapping in Option B
+- If doc IDs are preserved during corpus merge, then qrels does not need to change:
+    qrels[query_id] still points to doc_id(s) that are in the merged corpus.
+- If doc IDs collide between subsets, then you must namespace them:
+    doc_id := "{subset_name}:{original_doc_id}"
+  and update qrels doc ids accordingly.
+
+
+Is ViDoRe “small”?
+- ViDoRe subsets used here are commonly “subsampled” (e.g., ~500 queries) for quick runs.
+- Even if ViDoRe is not “tiny”, it is still far smaller than a production corpus (hundreds of thousands to millions of pages).
+- That’s why Option B exists as an additional scaling experiment (often paired with an in-domain corpus).
+
+
+Where this repo currently defines the subsets
+- `visual-rag-toolkit/benchmarks/run_vidore.py` has `VIDORE_DATASETS` mapping.
+
+
+
+
+

benchmarks/prepare_submission.py

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+#!/usr/bin/env python3
+"""
+Prepare submission for ViDoRe leaderboard.
+
+Reads evaluation results and formats them for HuggingFace submission.
+
+Usage:
+    python prepare_submission.py --results results/ --output submission.json
+    python prepare_submission.py --results results/ --model-name "MyModel" --upload
+"""
+
+import argparse
+import json
+from pathlib import Path
+from datetime import datetime
+from typing import Dict, Any, Optional
+
+# ViDoRe leaderboard expected datasets
+VIDORE_DATASETS = {
+    "docvqa_test_subsampled": "DocVQA",
+    "infovqa_test_subsampled": "InfoVQA", 
+    "tabfquad_test_subsampled": "TabFQuAD",
+    "tatdqa_test": "TAT-DQA",
+    "arxivqa_test_subsampled": "ArXivQA",
+    "shiftproject_test": "SHIFT",
+}
+
+
+def load_results(results_dir: Path) -> Dict[str, Dict[str, float]]:
+    """Load all result JSON files from directory."""
+    results = {}
+    
+    for json_file in results_dir.glob("*.json"):
+        with open(json_file) as f:
+            data = json.load(f)
+        
+        dataset = data.get("dataset", json_file.stem)
+        dataset_short = dataset.split("/")[-1].replace("_twostage", "")
+        
+        results[dataset_short] = {
+            "ndcg@5": data["metrics"].get("ndcg@5", 0),
+            "ndcg@10": data["metrics"].get("ndcg@10", 0),
+            "mrr@10": data["metrics"].get("mrr@10", 0),
+            "recall@5": data["metrics"].get("recall@5", 0),
+            "recall@10": data["metrics"].get("recall@10", 0),
+            "two_stage": data.get("two_stage", False),
+            "model": data.get("model", "unknown"),
+        }
+    
+    return results
+
+
+def format_submission(
+    results: Dict[str, Dict],
+    model_name: str,
+    model_url: Optional[str] = None,
+    description: Optional[str] = None,
+) -> Dict[str, Any]:
+    """Format results for ViDoRe leaderboard submission."""
+    
+    # Calculate average scores
+    ndcg10_scores = [r["ndcg@10"] for r in results.values()]
+    avg_ndcg10 = sum(ndcg10_scores) / len(ndcg10_scores) if ndcg10_scores else 0
+    
+    submission = {
+        "model_name": model_name,
+        "model_url": model_url or "",
+        "description": description or "Visual RAG Toolkit submission",
+        "submitted_at": datetime.now().isoformat(),
+        "average_ndcg@10": avg_ndcg10,
+        "results": {},
+    }
+    
+    # Add per-dataset results
+    for dataset_short, metrics in results.items():
+        display_name = VIDORE_DATASETS.get(dataset_short, dataset_short)
+        submission["results"][display_name] = {
+            "ndcg@5": metrics["ndcg@5"],
+            "ndcg@10": metrics["ndcg@10"],
+            "mrr@10": metrics["mrr@10"],
+        }
+    
+    return submission
+
+
+def print_summary(results: Dict[str, Dict], submission: Dict[str, Any]):
+    """Print summary table."""
+    print("\n" + "=" * 70)
+    print(f"MODEL: {submission['model_name']}")
+    print("=" * 70)
+    
+    print(f"\n{'Dataset':<25} {'NDCG@5':>10} {'NDCG@10':>10} {'MRR@10':>10}")
+    print("-" * 55)
+    
+    for dataset, metrics in results.items():
+        display = VIDORE_DATASETS.get(dataset, dataset)[:24]
+        print(f"{display:<25} {metrics['ndcg@5']:>10.4f} {metrics['ndcg@10']:>10.4f} {metrics['mrr@10']:>10.4f}")
+    
+    print("-" * 55)
+    print(f"{'AVERAGE':<25} {'':<10} {submission['average_ndcg@10']:>10.4f}")
+    print("=" * 70)
+
+
+def upload_to_huggingface(submission: Dict[str, Any], repo_id: str = "vidore/results"):
+    """Upload submission to HuggingFace."""
+    try:
+        from huggingface_hub import HfApi
+    except ImportError:
+        print("Install huggingface_hub: pip install huggingface_hub")
+        return False
+    
+    api = HfApi()
+    
+    # Save to temp file
+    temp_file = Path(f"/tmp/submission_{datetime.now().strftime('%Y%m%d_%H%M%S')}.json")
+    with open(temp_file, "w") as f:
+        json.dump(submission, f, indent=2)
+    
+    try:
+        api.upload_file(
+            path_or_fileobj=str(temp_file),
+            path_in_repo=f"submissions/{submission['model_name']}.json",
+            repo_id=repo_id,
+            repo_type="space",
+        )
+        print(f"✅ Uploaded to {repo_id}")
+        return True
+    except Exception as e:
+        print(f"❌ Upload failed: {e}")
+        return False
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Prepare ViDoRe submission")
+    parser.add_argument(
+        "--results", type=str, default="results",
+        help="Directory with result JSON files"
+    )
+    parser.add_argument(
+        "--output", type=str, default="submission.json",
+        help="Output submission file"
+    )
+    parser.add_argument(
+        "--model-name", type=str, default="visual-rag-toolkit",
+        help="Model name for leaderboard"
+    )
+    parser.add_argument(
+        "--model-url", type=str,
+        help="URL to model/paper"
+    )
+    parser.add_argument(
+        "--description", type=str,
+        help="Model description"
+    )
+    parser.add_argument(
+        "--upload", action="store_true",
+        help="Upload to HuggingFace"
+    )
+    
+    args = parser.parse_args()
+    
+    results_dir = Path(args.results)
+    if not results_dir.exists():
+        print(f"❌ Results directory not found: {results_dir}")
+        return
+    
+    # Load results
+    results = load_results(results_dir)
+    if not results:
+        print(f"❌ No result files found in {results_dir}")
+        return
+    
+    print(f"📊 Found {len(results)} dataset results")
+    
+    # Format submission
+    submission = format_submission(
+        results,
+        model_name=args.model_name,
+        model_url=args.model_url,
+        description=args.description,
+    )
+    
+    # Print summary
+    print_summary(results, submission)
+    
+    # Save
+    output_path = Path(args.output)
+    with open(output_path, "w") as f:
+        json.dump(submission, f, indent=2)
+    print(f"\n💾 Saved to: {output_path}")
+    
+    # Upload if requested
+    if args.upload:
+        upload_to_huggingface(submission)
+
+
+if __name__ == "__main__":
+    main()
+
+
+
+
+
+
+