virtool-workflow 7.2.2__py3-none-any.whl → 7.2.3__py3-none-any.whl

virtool_workflow/utils.py

@@ -25,6 +25,21 @@ def coerce_to_coroutine_function(func: Callable):
     return _func
 
 
+def normalize_log_level(
+    _logger: object,
+    _method_name: str,
+    event_dict: dict[str, object],
+) -> dict[str, object]:
+    """Map exception method calls to error level.
+
+    The logging module doesn't have EXCEPTION level.
+    """
+    if event_dict.get("level") == "exception":
+        event_dict["level"] = "error"
+
+    return event_dict
+
+
 def configure_logs(use_sentry: bool):
     logging.basicConfig(
         format="%(message)s",
@@ -32,17 +47,11 @@ def configure_logs(use_sentry: bool):
         level=logging.INFO,
     )
 
-    def normalize_log_level(logger, method_name, event_dict):
-        """Map EXCEPTION level to ERROR since logging module doesn't have EXCEPTION."""
-        if event_dict.get("level") == "EXCEPTION":
-            event_dict["level"] = "ERROR"
-        return event_dict
-
     processors = [
         structlog.stdlib.filter_by_level,
-        structlog.stdlib.add_logger_name,
         structlog.stdlib.add_log_level,
         normalize_log_level,
+        structlog.stdlib.add_logger_name,
         structlog.stdlib.PositionalArgumentsFormatter(),
         structlog.processors.TimeStamper(fmt="%Y-%m-%dT%H:%M:%SZ"),
         structlog.processors.StackInfoRenderer(),

{virtool_workflow-7.2.2.dist-info → virtool_workflow-7.2.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: virtool-workflow
-Version: 7.2.2
+Version: 7.2.3
 Summary: A framework for developing bioinformatics workflows for Virtool.
 License: MIT
 Author: Ian Boyes
@@ -9,13 +9,13 @@ Requires-Python: >=3.12.3,<3.13.0
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
 Requires-Dist: aiofiles (>=24.1.0,<25.0.0)
-Requires-Dist: aiohttp (>=3.12.13,<4.0.0)
+Requires-Dist: aiohttp (>=3.12.15,<4.0.0)
 Requires-Dist: biopython (>=1.81,<2.0)
 Requires-Dist: click (>=8.2.1,<9.0.0)
-Requires-Dist: orjson (>=3.9.9,<4.0.0)
+Requires-Dist: orjson (>=3.11.1,<4.0.0)
 Requires-Dist: pydantic-factories (>=1.17.3,<2.0.0)
 Requires-Dist: pyfixtures (>=1.0.0,<2.0.0)
-Requires-Dist: sentry-sdk (>=2.30.0,<3.0.0)
+Requires-Dist: sentry-sdk (>=2.34.1,<3.0.0)
 Requires-Dist: structlog-sentry (>=2.2.1,<3.0.0)
 Requires-Dist: virtool (>=31.9.0,<32.0.0)
 Description-Content-Type: text/markdown

{virtool_workflow-7.2.2.dist-info → virtool_workflow-7.2.3.dist-info}/RECORD

@@ -36,10 +36,10 @@ virtool_workflow/runtime/redis.py,sha256=m-Dtdpbho-Qa9W5IYJCeEEZ7vv04hYu5yALsxOJ
 virtool_workflow/runtime/run.py,sha256=O_XrnBPgWBfYbi70TjhN7C1hviget6kUcTGnADHmLyg,7892
 virtool_workflow/runtime/run_subprocess.py,sha256=OFHVQ2ao16X8I9nl6Nm_f3IL7rHnmLH8ixtlAFKlOLk,4790
 virtool_workflow/runtime/sentry.py,sha256=WJ9CI2fshJD5As6s3umUtJrUq4Z-hQRrSxAgbjceXrk,1326
-virtool_workflow/utils.py,sha256=9rHSlcvZsV2qE1Wo-cUDqESIATswr1zR_P8V-wP6jdk,2545
+virtool_workflow/utils.py,sha256=wBeL9YSq_jYjJHjRn-b_f0eZi5LVpFO8RTQGJus-aog,2625
 virtool_workflow/workflow.py,sha256=6jUGggiLEsducXyo5owEYflzQb9qZQrAtpNS3t6z4Z4,2675
-virtool_workflow-7.2.2.dist-info/LICENSE,sha256=nkoVQw9W4aoQM9zgtNzHDmztap5TuXZ1L2-87vNr3w8,1097
-virtool_workflow-7.2.2.dist-info/METADATA,sha256=CWbWprKHo_pBUmrIQDhxB_8ySL8YLTDWHMnnBEuVVIA,1853
-virtool_workflow-7.2.2.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-virtool_workflow-7.2.2.dist-info/entry_points.txt,sha256=d4MA8ZDTJOU0jKZ3ymtHZbfLVoRPgItEIN5U4uIqay8,62
-virtool_workflow-7.2.2.dist-info/RECORD,,
+virtool_workflow-7.2.3.dist-info/LICENSE,sha256=nkoVQw9W4aoQM9zgtNzHDmztap5TuXZ1L2-87vNr3w8,1097
+virtool_workflow-7.2.3.dist-info/METADATA,sha256=4FM_PM1ek-n30sB2pZkIZevBWcMARQ87BSz5yQyi930,1854
+virtool_workflow-7.2.3.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+virtool_workflow-7.2.3.dist-info/entry_points.txt,sha256=d4MA8ZDTJOU0jKZ3ymtHZbfLVoRPgItEIN5U4uIqay8,62
+virtool_workflow-7.2.3.dist-info/RECORD,,