virtool-workflow 7.1.1__py3-none-any.whl → 7.1.5__py3-none-any.whl

virtool_workflow/analysis/skewer.py

@@ -1,6 +1,7 @@
 """Utilities and a fixture for using `Skewer <https://github.com/relipmoc/skewer>`_ to
 trim reads.
 """
+
 import asyncio
 import os
 import shutil
@@ -12,7 +13,7 @@ from tempfile import mkdtemp
 from typing import Protocol
 
 from pyfixtures import fixture
-from virtool_core.models.enums import LibraryType
+from virtool.models.enums import LibraryType
 
 from virtool_workflow import RunSubprocess
 from virtool_workflow.analysis.utils import ReadPaths
@@ -108,7 +109,8 @@ class SkewerResult:
 
 
 def calculate_skewer_trimming_parameters(
-    sample: WFSample, min_read_length: int,
+    sample: WFSample,
+    min_read_length: int,
 ) -> SkewerConfiguration:
     """Calculates trimming parameters based on the library type, and minimum allowed trim length.
 
@@ -141,9 +143,11 @@ class SkewerRunner(Protocol):
     """A protocol describing callables that can be used to run Skewer."""
 
     async def __call__(
-        self, config: SkewerConfiguration, paths: ReadPaths, output_path: Path,
-    ) -> SkewerResult:
-        ...
+        self,
+        config: SkewerConfiguration,
+        paths: ReadPaths,
+        output_path: Path,
+    ) -> SkewerResult: ...
 
 
 @fixture
@@ -178,7 +182,9 @@ def skewer(proc: int, run_subprocess: RunSubprocess) -> SkewerRunner:
         raise RuntimeError("skewer is not installed.")
 
     async def func(
-        config: SkewerConfiguration, read_paths: ReadPaths, output_path: Path,
+        config: SkewerConfiguration,
+        read_paths: ReadPaths,
+        output_path: Path,
     ):
         temp_path = Path(await asyncio.to_thread(mkdtemp, suffix="_virtool_skewer"))
 
@@ -219,7 +225,9 @@ def skewer(proc: int, run_subprocess: RunSubprocess) -> SkewerRunner:
         )
 
         read_paths = await asyncio.to_thread(
-            _rename_trimming_results, temp_path, output_path,
+            _rename_trimming_results,
+            temp_path,
+            output_path,
         )
 
         return SkewerResult(command, output_path, process, read_paths)

virtool_workflow/analysis/trimming.py

@@ -1,14 +1,17 @@
 """Calculate trimming parameters which are passed the Skewer read trimming tool."""
+
 import hashlib
 import json
 
-from virtool_core.models.enums import LibraryType
+from virtool.models.enums import LibraryType
 
 from virtool_workflow.data.samples import WFSample
 
 
 def calculate_trimming_cache_key(
-    sample_id: str, trimming_parameters: dict, program: str = "skewer",
+    sample_id: str,
+    trimming_parameters: dict,
+    program: str = "skewer",
 ):
     """Compute a unique cache key.
 

virtool_workflow/api/acquire.py

@@ -2,7 +2,7 @@ import asyncio
 
 from aiohttp import ClientConnectionError, ClientSession, TCPConnector
 from structlog import get_logger
-from virtool_core.models.job import JobAcquired
+from virtool.jobs.models import JobAcquired
 
 from virtool_workflow.errors import (
     JobAlreadyAcquiredError,

virtool_workflow/data/analyses.py

@@ -1,14 +1,15 @@
 """A fixture and class for representing the analysis associated with a workflow run."""
+
 from pathlib import Path
 from typing import Any
 
 from pyfixtures import fixture
-from virtool_core.models.analysis import Analysis, AnalysisSample
-from virtool_core.models.index import IndexNested
-from virtool_core.models.job import Job
-from virtool_core.models.ml import MLModelRelease
-from virtool_core.models.reference import ReferenceNested
-from virtool_core.models.subtraction import SubtractionNested
+from virtool.analyses.models import Analysis, AnalysisSample
+from virtool.indexes.models import IndexNested
+from virtool.jobs.models import JobNested
+from virtool.ml.models import MLModelRelease
+from virtool.references.models import ReferenceNested
+from virtool.subtractions.models import SubtractionNested
 
 from virtool_workflow.api.client import APIClient
 from virtool_workflow.files import VirtoolFileFormat
@@ -83,7 +84,7 @@ class WFAnalysis:
 @fixture
 async def analysis(
     _api: APIClient,
-    job: Job,
+    job: JobNested,
 ) -> WFAnalysis:
     """A :class:`.WFAnalysis` object that represents the analysis associated with the running
     workflow.

virtool_workflow/data/hmms.py

@@ -1,4 +1,5 @@
 """A class and fixture for accessing Virtool HMM data for use in analysis workflows."""
+
 import asyncio
 import json
 from dataclasses import dataclass
@@ -8,8 +9,8 @@ from shutil import which
 
 import aiofiles
 from pyfixtures import fixture
-from virtool_core.models.hmm import HMM
-from virtool_core.utils import decompress_file
+from virtool.hmm.models import HMM
+from virtool.utils import decompress_file
 
 from virtool_workflow.api.client import APIClient
 from virtool_workflow.runtime.run_subprocess import RunSubprocess

virtool_workflow/data/indexes.py

@@ -6,11 +6,11 @@ from pathlib import Path
 import aiofiles
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.models.analysis import Analysis
-from virtool_core.models.index import Index
-from virtool_core.models.job import Job
-from virtool_core.models.reference import ReferenceNested
-from virtool_core.utils import decompress_file
+from virtool.analyses.models import Analysis
+from virtool.indexes.models import Index
+from virtool.jobs.models import Job
+from virtool.references.models import ReferenceNested
+from virtool.utils import decompress_file
 
 from virtool_workflow.api.client import APIClient
 from virtool_workflow.errors import MissingJobArgumentError

virtool_workflow/data/jobs.py

@@ -2,7 +2,7 @@ import traceback
 
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.models.job import Job, JobAcquired, JobState
+from virtool.jobs.models import JobAcquired, Job, JobState
 
 from virtool_workflow import Workflow, WorkflowStep
 from virtool_workflow.api.client import APIClient

virtool_workflow/data/ml.py

@@ -1,4 +1,5 @@
 """A fixture and dataclass for working with machine learning models in workflows."""
+
 import asyncio
 import shutil
 from dataclasses import dataclass
@@ -6,7 +7,7 @@ from pathlib import Path
 
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.models.ml import MLModelRelease
+from virtool.ml.models import MLModelRelease
 
 from virtool_workflow.api.client import APIClient
 from virtool_workflow.data.analyses import WFAnalysis

virtool_workflow/data/samples.py

@@ -1,13 +1,14 @@
 import asyncio
+from collections.abc import Callable, Coroutine
 from dataclasses import dataclass
 from pathlib import Path
-from typing import Any, Callable, Coroutine
+from typing import Any
 
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.models.enums import LibraryType
-from virtool_core.models.job import Job
-from virtool_core.models.samples import Quality, Sample
+from virtool.jobs.models import Job
+from virtool.models.enums import LibraryType
+from virtool.samples.models import Quality, Sample
 
 from virtool_workflow.analysis.utils import ReadPaths
 from virtool_workflow.api.client import APIClient

virtool_workflow/data/subtractions.py

@@ -1,12 +1,12 @@
 import asyncio
+from collections.abc import Callable, Coroutine
 from dataclasses import dataclass
 from pathlib import Path
-from typing import Callable, Coroutine
 
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.models.job import Job
-from virtool_core.models.subtraction import (
+from virtool.jobs.models import Job
+from virtool.subtractions.models import (
     NucleotideComposition,
     Subtraction,
     SubtractionFile,

virtool_workflow/pytest_plugin/data.py

@@ -4,20 +4,14 @@ from pathlib import Path
 
 import pytest
 from pydantic_factories import ModelFactory, Use
-from virtool_core.models.analysis import Analysis
-from virtool_core.models.index import Index, IndexNested
-from virtool_core.models.job import JobAcquired, JobMinimal, JobPing
-from virtool_core.models.ml import MLModelRelease
-from virtool_core.models.reference import Reference
-from virtool_core.models.samples import (
-    Sample,
-    SampleNested,
-)
-from virtool_core.models.subtraction import (
-    Subtraction,
-    SubtractionFile,
-    SubtractionNested,
-)
+from virtool.analyses.models import Analysis, AnalysisSample
+from virtool.indexes.models import Index, IndexNested
+from virtool.jobs.models import JobAcquired, JobMinimal, JobPing
+from virtool.ml.models import MLModelRelease
+from virtool.references.models import Reference, ReferenceNested
+from virtool.samples.models import Sample
+from virtool.samples.models_base import SampleNested
+from virtool.subtractions.models import Subtraction, SubtractionFile, SubtractionNested
 
 from virtool_workflow.pytest_plugin.utils import SUBTRACTION_FILENAMES
 
@@ -150,11 +144,11 @@ def data(
     reference.targets = []
 
     index = IndexFactory.build()
-    index.reference = Reference.parse_obj(reference)
+    index.reference = ReferenceNested.parse_obj(reference)
     index.ready = True
 
     new_index: Index = IndexFactory.build()
-    new_index.reference = Reference.parse_obj(reference)
+    new_index.reference = ReferenceNested.parse_obj(reference)
     new_index.files = []
     new_index.ready = False
 
@@ -183,10 +177,10 @@ def data(
     new_subtraction.ready = False
 
     analysis: Analysis = AnalysisFactory.build()
-    analysis.sample = SampleNested.parse_obj(sample)
+    analysis.sample = AnalysisSample.parse_obj(sample)
     analysis.workflow = "pathoscope_bowtie"
     analysis.index = IndexNested.parse_obj(index)
-    analysis.reference = Reference.parse_obj(reference)
+    analysis.reference = ReferenceNested.parse_obj(reference)
     analysis.subtractions = [SubtractionNested.parse_obj(subtraction)]
 
     return Data(

virtool_workflow/runtime/redis.py

@@ -1,9 +1,9 @@
 import asyncio
 from asyncio import CancelledError
-from typing import Callable
+from collections.abc import Callable
 
 from structlog import get_logger
-from virtool_core.redis import Redis
+from virtool.redis import Redis
 
 logger = get_logger("redis")
 
@@ -15,14 +15,15 @@ async def get_next_job_with_timeout(
     redis: Redis,
     timeout: int | None = None,
 ) -> str:
-    """Get the next job ID from a Redis list and raise a  :class:``Timeout`` error if one
-    is not found in ``timeout`` seconds.
+    """Get the next job ID from a Redis list.
+
+    Raise a  :class:``Timeout`` error if an ID is not found in ``timeout``
+    seconds.
 
     :param list_name: the name of the list to pop from
     :param redis: the Redis client
     :param timeout: seconds to wait before raising :class:``Timeout``
     :return: the next job ID
-
     """
     logger.info(
         "Waiting for a job",

virtool_workflow/runtime/run.py

@@ -1,16 +1,14 @@
 import asyncio
-import logging
 import signal
 import sys
 from asyncio import CancelledError
+from collections.abc import Callable
 from pathlib import Path
-from typing import Callable
 
-import structlog
 from pyfixtures import FixtureScope, runs_in_new_fixture_context
 from structlog import get_logger
-from virtool_core.models.job import JobState
-from virtool_core.redis import Redis
+from virtool.jobs.models import JobState
+from virtool.redis import Redis
 
 from virtool_workflow.api.acquire import acquire_job_by_id
 from virtool_workflow.api.client import api_client
@@ -41,7 +39,7 @@ from virtool_workflow.runtime.redis import (
     wait_for_cancellation,
 )
 from virtool_workflow.runtime.sentry import configure_sentry
-from virtool_workflow.utils import get_virtool_workflow_version
+from virtool_workflow.utils import configure_logs, get_virtool_workflow_version
 from virtool_workflow.workflow import Workflow
 
 logger = get_logger("runtime")
@@ -161,11 +159,14 @@ async def run_workflow(
 
     job = await acquire_job_by_id(config.jobs_api_connection_string, job_id)
 
-    async with api_client(
-        config.jobs_api_connection_string,
-        job.id,
-        job.key,
-    ) as api, FixtureScope() as scope:
+    async with (
+        api_client(
+            config.jobs_api_connection_string,
+            job.id,
+            job.key,
+        ) as api,
+        FixtureScope() as scope,
+    ):
         # These fixtures should not be used directly by the workflow. They are used
         # by other built-in fixtures.
         scope["_api"] = api
@@ -209,23 +210,7 @@ async def start_runtime(
 
     When a job ID is received, the runtime acquires the job from the jobs API and
     """
-    # configure_logs(dev)
-
-    logging.basicConfig(level=logging.INFO, format="%(message)s")
-
-    structlog.configure(
-        wrapper_class=structlog.make_filtering_bound_logger(logging.INFO),
-        logger_factory=structlog.stdlib.LoggerFactory(),
-        cache_logger_on_first_use=True,
-        processors=[
-            structlog.stdlib.filter_by_level,
-            structlog.stdlib.add_logger_name,
-            structlog.stdlib.add_log_level,
-            structlog.stdlib.PositionalArgumentsFormatter(),
-            structlog.processors.TimeStamper(fmt="%Y-%m-%d %H:%M.%S"),
-            structlog.dev.ConsoleRenderer(colors=True, sort_keys=True),
-        ],
-    )
+    configure_logs(bool(sentry_dsn))
 
     logger.info(
         "found virtool-workflow",
@@ -242,7 +227,7 @@ async def start_runtime(
     async with Redis(redis_connection_string) as redis:
         try:
             job_id = await get_next_job_with_timeout(redis_list_name, redis, timeout)
-        except asyncio.TimeoutError:
+        except TimeoutError:
             # This happens due to Kubernetes scheduling issues or job cancellations. It
             # is not an error.
             logger.warning("timed out while waiting for job id")

virtool_workflow/runtime/run_subprocess.py

@@ -2,12 +2,13 @@
 
 import asyncio
 from asyncio.subprocess import Process
+from collections.abc import Callable, Coroutine
 from pathlib import Path
-from typing import Callable, Coroutine, Protocol
+from typing import Protocol
 
 from pyfixtures import fixture
 from structlog import get_logger
-from virtool_core.utils import timestamp
+from virtool.utils import timestamp
 
 from virtool_workflow.errors import SubprocessFailedError
 

virtool_workflow/utils.py

@@ -1,4 +1,6 @@
 import asyncio
+import logging
+import sys
 import tarfile
 from collections.abc import Callable
 from functools import wraps
@@ -6,6 +8,10 @@ from importlib import metadata
 from inspect import iscoroutinefunction
 from pathlib import Path
 
+import structlog
+from structlog.processors import LogfmtRenderer
+from structlog_sentry import SentryProcessor
+
 
 def coerce_to_coroutine_function(func: Callable):
     """Wrap a non-async function in an async function."""
@@ -19,6 +25,49 @@ def coerce_to_coroutine_function(func: Callable):
     return _func
 
 
+def configure_logs(use_sentry: bool):
+    logging.basicConfig(
+        format="%(message)s",
+        stream=sys.stdout,
+        level=logging.INFO,
+    )
+
+    def normalize_log_level(logger, method_name, event_dict):
+        """Map EXCEPTION level to ERROR since logging module doesn't have EXCEPTION."""
+        if event_dict.get("level") == "EXCEPTION":
+            event_dict["level"] = "ERROR"
+        return event_dict
+
+    processors = [
+        structlog.stdlib.filter_by_level,
+        structlog.stdlib.add_logger_name,
+        structlog.stdlib.add_log_level,
+        normalize_log_level,
+        structlog.stdlib.PositionalArgumentsFormatter(),
+        structlog.processors.TimeStamper(fmt="%Y-%m-%dT%H:%M:%SZ"),
+        structlog.processors.StackInfoRenderer(),
+        structlog.processors.UnicodeDecoder(),
+    ]
+
+    if use_sentry:
+        processors.append(
+            SentryProcessor(event_level=logging.WARNING, level=logging.INFO),
+        )
+
+    processors.append(
+        LogfmtRenderer(
+            key_order=["timestamp", "level", "logger", "event"],
+        ),
+    )
+
+    structlog.configure(
+        cache_logger_on_first_use=True,
+        logger_factory=structlog.stdlib.LoggerFactory(),
+        processors=processors,
+        wrapper_class=structlog.stdlib.BoundLogger,
+    )
+
+
 def get_virtool_workflow_version() -> str:
     """Get the version of the installed virtool-workflow package."""
     try:

{virtool_workflow-7.1.1.dist-info → virtool_workflow-7.1.5.dist-info}/METADATA

@@ -1,15 +1,13 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.3
 Name: virtool-workflow
-Version: 7.1.1
+Version: 7.1.5
 Summary: A framework for developing bioinformatics workflows for Virtool.
-Home-page: https://github.com/virtool/virtool-workflow
 License: MIT
 Author: Ian Boyes
 Maintainer: Ian Boyes
-Requires-Python: >=3.12,<3.13
+Requires-Python: >=3.12.3,<3.13.0
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.12
 Requires-Dist: aiofiles (>=0.7.0,<0.8.0)
 Requires-Dist: aiohttp (>=3.8.1,<4.0.0)
 Requires-Dist: biopython (>=1.81,<2.0)
@@ -17,9 +15,9 @@ Requires-Dist: click (>=8.1.7,<9.0.0)
 Requires-Dist: orjson (>=3.9.9,<4.0.0)
 Requires-Dist: pydantic-factories (>=1.17.3,<2.0.0)
 Requires-Dist: pyfixtures (>=1.0.0,<2.0.0)
-Requires-Dist: sentry-sdk (>=2.3.1,<3.0.0)
-Requires-Dist: virtool-core (>=14.0.0,<15.0.0)
-Project-URL: Repository, https://github.com/virtool/virtool-workflow
+Requires-Dist: sentry-sdk (>=2.30.0,<3.0.0)
+Requires-Dist: structlog-sentry (>=2.2.1,<3.0.0)
+Requires-Dist: virtool (>=31.1.3,<32.0.0)
 Description-Content-Type: text/markdown
 
 # Virtool Workflow
@@ -63,7 +61,6 @@ docker compose up -d
 
 # Run tests in the test container.
 docker compose exec test poetry run pytest
-
 ```
 
 Run specific tests like:

{virtool_workflow-7.1.1.dist-info → virtool_workflow-7.1.5.dist-info}/RECORD

@@ -1,29 +1,29 @@
 virtool_workflow/__init__.py,sha256=Tw0lAFudpsFyCaiR2Oz_RKYU6N-mSCmhXDftm1WT37M,308
 virtool_workflow/analysis/__init__.py,sha256=eRMQhKOxijlFlYI78FzmHZoF1qYevBXycpIcmlrgFqI,57
 virtool_workflow/analysis/fastqc.py,sha256=pNorkhNVazV30fBY3KEJ6vfEskqsBzp80a_Iai8BOn8,13149
-virtool_workflow/analysis/skewer.py,sha256=_kTCLd6XUUscgMgPVc50Xcwy1QZzxCwxbEmYgm6PQwc,7130
-virtool_workflow/analysis/trimming.py,sha256=rJG9f1mDMkivN-YcxU-_IubTUkn-oyG3NUUrhGuHWzs,1447
+virtool_workflow/analysis/skewer.py,sha256=TWUfiYeUIahHbIosNYo2sqMjS4kUkoFBTspr70eRloI,7186
+virtool_workflow/analysis/trimming.py,sha256=3Dk0J322ZhBzhuplaVgxZv4l7MLu7ZhqNQHOtNi6CGM,1451
 virtool_workflow/analysis/utils.py,sha256=YU1_yInZzTNl9nKQTebUz47kUEqZ__d0k-RMLX8DWOA,1108
 virtool_workflow/api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-virtool_workflow/api/acquire.py,sha256=5SOlNfyXOdTR3yjMOpq5sCj6kXeuih96YjsnQuzpG9k,2161
+virtool_workflow/api/acquire.py,sha256=M8Wf6ck6YOPQU_0dalAYxuQbukj6c4Uat1OPhV7Gj2w,2157
 virtool_workflow/api/client.py,sha256=wOAAX0Na1IrULWUTGq0wzbjquZqmZqCnc0gb2A2JvLE,4604
 virtool_workflow/api/utils.py,sha256=UrOsrGMMJ6PbWcl84A4tKD6Lq7C8hVQIZ_TpQR75KHU,3123
 virtool_workflow/cli.py,sha256=yEl1LziABKbjc5MCOoUGLy-iuqehOou37x9ox4LA92M,1441
 virtool_workflow/data/__init__.py,sha256=L2bQ5rMpnCMuLWDMwel4-wPchfQCTHH3EEwxDqwGOsY,610
-virtool_workflow/data/analyses.py,sha256=EzXfidKizEV_KjvaWrMLZpUMo0H2KCE_EI3IQPAFjT4,3117
-virtool_workflow/data/hmms.py,sha256=h9ahtprzhEsHNscsr_--2vkkKFNWgZu49ojkHRw9Ars,3234
-virtool_workflow/data/indexes.py,sha256=qTSqWJqRq-0WKmHQNeBa80vG3qMRvi4i8eVnd0AQqOc,9028
-virtool_workflow/data/jobs.py,sha256=LXIsEjgJx_bRa19_3gx5kxfdCmNez-xlAT7e-4bOcLo,1667
-virtool_workflow/data/ml.py,sha256=E19USVcXWjCU2NH1QVR74PLBnVY66NKJG00DSxnn1yY,2190
-virtool_workflow/data/samples.py,sha256=u7ce7oXB-yGbn2rRQYvs8Km9VKknifK5MHY29P5HQLg,4958
-virtool_workflow/data/subtractions.py,sha256=4jOmyxPtFuUAkgEbUKTOY3lsDIvlIsL623U5AK0P2mo,7301
+virtool_workflow/data/analyses.py,sha256=tGUU3gLyk_4vn1Xb7FccvBc_HQzYW_AoU7Dh1OkWhAA,3105
+virtool_workflow/data/hmms.py,sha256=pntKYyWeipApMNUGYh90ReyTbJgbCPlE-cm66Eo6teA,3225
+virtool_workflow/data/indexes.py,sha256=hxqxJBTt2VnclR8YjqAAEtk_Ig7OEPBx0sjxf4Puy9Y,9007
+virtool_workflow/data/jobs.py,sha256=YYWxWoiVtHIBKkpOTpZl-Ute5rg-RAnMGAzBoixDNQo,1663
+virtool_workflow/data/ml.py,sha256=haYHZfDbYOk0ftg6MCXbQpoDFl1VbdnQ_TuNvI9pmw0,2186
+virtool_workflow/data/samples.py,sha256=fgyuQSavZiqwrqEH7Y_CoAR5gJIcO1ujrIyO5tDrXeI,4971
+virtool_workflow/data/subtractions.py,sha256=LANUXM89AyFIAmG1JPR06yTniftxIkt9qqSJm7QupCU,7302
 virtool_workflow/data/uploads.py,sha256=jjQ8hczvkSV-B8dioSDB_E5kA2S_4kDYDmr86TxOqbA,905
 virtool_workflow/decorators.py,sha256=L9pVLCLpew-3nMdPVqKwmzk7srFEA_VT0oWrTsZsBok,1311
 virtool_workflow/errors.py,sha256=VXH4FUuour9PqBE1RgC0gpZrBiQthCr3vfYCUXeHPQ4,1663
 virtool_workflow/files.py,sha256=N9eo06qFNbZ0493006LMD2ezrC5fjw2KqSs-uh4qRB4,837
 virtool_workflow/hooks.py,sha256=z2axwQTj3M_2tTAnBZCG6sr14GeDmxwVkEYZjmY5Nos,2673
 virtool_workflow/pytest_plugin/__init__.py,sha256=y_no8N763GwZGPouTeyUQEZQWoM8eb5dPxmdRv3L0s8,740
-virtool_workflow/pytest_plugin/data.py,sha256=d59oyigNq-yBGsDPIJf5pJr3daT3VpNSGATOU-tIwTw,5586
+virtool_workflow/pytest_plugin/data.py,sha256=objP7cn_4u2MtsDaf0amG0EtBv3-jthj9l3pvUyj3-I,5618
 virtool_workflow/pytest_plugin/utils.py,sha256=lxyWqHKWXGxQXBIbcYUCC6PvjSeruhSDnD-dPX1mL5Y,211
 virtool_workflow/runtime/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 virtool_workflow/runtime/config.py,sha256=fHkprWxxqWeEWKOobxpVvSOS5Njk5Mq32sH-p5o_d8g,546
@@ -32,14 +32,14 @@ virtool_workflow/runtime/events.py,sha256=ZIX3veBfC_2yNTdClHJaYMPn4KAF9JZqpQ3qDq
 virtool_workflow/runtime/hook.py,sha256=ZfmvDHoSE7Qwk4Rpcjyd-pYuwP55mzEddec2ngRZpsg,4328
 virtool_workflow/runtime/path.py,sha256=J8CsNMTg4XgDtib0gVSsLNvv17q793M-ydsxN6pkHrI,562
 virtool_workflow/runtime/ping.py,sha256=Xm4udRCcldHfSV1Rjpiqr-6vE7G6kaVaZgDlzNSxdao,1434
-virtool_workflow/runtime/redis.py,sha256=RK1u7IZCjgtc9jXiq4Va4Vde9v1_6NWPQ0tUdthSf5E,1806
-virtool_workflow/runtime/run.py,sha256=dJ1u2dzwAsDKG8uomEcJwHPqx5bZbNj849stoCVoc7c,8214
-virtool_workflow/runtime/run_subprocess.py,sha256=hUeziLbDn3yenmVPlywAn_9FsRpYXgCIVPB1dJQzKfI,4768
+virtool_workflow/runtime/redis.py,sha256=m-Dtdpbho-Qa9W5IYJCeEEZ7vv04hYu5yALsxOJr0FY,1813
+virtool_workflow/runtime/run.py,sha256=l0HguLLdYRVKvYTnIjoUB-9h6oDxffK-xzZYqO9lSIM,7599
+virtool_workflow/runtime/run_subprocess.py,sha256=OFHVQ2ao16X8I9nl6Nm_f3IL7rHnmLH8ixtlAFKlOLk,4790
 virtool_workflow/runtime/sentry.py,sha256=y4mh1sT-hoijRtKr4meE7yn1E-alxRKDylzGxmN6ndU,755
-virtool_workflow/utils.py,sha256=mc3i8whQC-2zU07v8gaR9GeumKSUic0OpFrv4X63r8o,1089
+virtool_workflow/utils.py,sha256=jLsOtwh3RP7BCdgcr_rQr3DqzK1nLP2NILFXxbgAyGk,2530
 virtool_workflow/workflow.py,sha256=W8IEFzd28wjdNNlqRrPDKyX9LeQpR6Vxy7zKeYEMQEc,2655
-virtool_workflow-7.1.1.dist-info/LICENSE,sha256=nkoVQw9W4aoQM9zgtNzHDmztap5TuXZ1L2-87vNr3w8,1097
-virtool_workflow-7.1.1.dist-info/METADATA,sha256=auGjhsbUFyYurv0ClJN5w1egnfxHjogoHRkDwdvvhsQ,1884
-virtool_workflow-7.1.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-virtool_workflow-7.1.1.dist-info/entry_points.txt,sha256=d4MA8ZDTJOU0jKZ3ymtHZbfLVoRPgItEIN5U4uIqay8,62
-virtool_workflow-7.1.1.dist-info/RECORD,,
+virtool_workflow-7.1.5.dist-info/LICENSE,sha256=nkoVQw9W4aoQM9zgtNzHDmztap5TuXZ1L2-87vNr3w8,1097
+virtool_workflow-7.1.5.dist-info/METADATA,sha256=2noOApATUCmR9G0i7FCgHWjzATEaC1KkV_90p9Aso_A,1757
+virtool_workflow-7.1.5.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+virtool_workflow-7.1.5.dist-info/entry_points.txt,sha256=d4MA8ZDTJOU0jKZ3ymtHZbfLVoRPgItEIN5U4uIqay8,62
+virtool_workflow-7.1.5.dist-info/RECORD,,

{virtool_workflow-7.1.1.dist-info → virtool_workflow-7.1.5.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 1.9.0
+Generator: poetry-core 2.1.3
 Root-Is-Purelib: true
 Tag: py3-none-any