vfbquery 0.5.0__py3-none-any.whl → 0.5.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. test/readme_parser.py +29 -33
  2. test/term_info_queries_test.py +49 -34
  3. test/test_default_caching.py +86 -85
  4. test/test_examples_code.py +7 -0
  5. test/test_examples_diff.py +95 -172
  6. test/test_neurons_part_here.py +12 -13
  7. test/test_query_performance.py +3 -7
  8. vfbquery/__init__.py +47 -35
  9. vfbquery/cached_functions.py +772 -131
  10. vfbquery/owlery_client.py +1 -1
  11. vfbquery/solr_cache_integration.py +34 -30
  12. vfbquery/solr_result_cache.py +262 -99
  13. vfbquery/term_info_queries.py +1 -1
  14. vfbquery/vfb_queries.py +69 -20
  15. vfbquery-0.5.2.dist-info/METADATA +2806 -0
  16. {vfbquery-0.5.0.dist-info → vfbquery-0.5.2.dist-info}/RECORD +19 -18
  17. {vfbquery-0.5.0.dist-info → vfbquery-0.5.2.dist-info}/WHEEL +1 -1
  18. vfbquery-0.5.0.dist-info/METADATA +0 -2273
  19. {vfbquery-0.5.0.dist-info → vfbquery-0.5.2.dist-info}/LICENSE +0 -0
  20. {vfbquery-0.5.0.dist-info → vfbquery-0.5.2.dist-info}/top_level.txt +0 -0
vfbquery-0.5.0.dist-info/METADATA DELETED
@@ -1,2273 +0,0 @@
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- Metadata-Version: 2.1
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- Name: vfbquery
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- Version: 0.5.0
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- Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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- Home-page: https://github.com/VirtualFlyBrain/VFBquery
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- Author: VirtualFlyBrain
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- License: GPL-3.0 License
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- Project-URL: Bug Reports, https://github.com/VirtualFlyBrain/VFBquery/issues
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- Project-URL: Source, https://github.com/VirtualFlyBrain/VFBquery
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- Classifier: Programming Language :: Python :: 3
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- Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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- Classifier: Operating System :: OS Independent
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- Requires-Python: >=3.7
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- Description-Content-Type: text/markdown
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- License-File: LICENSE
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- Requires-Dist: pysolr
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- Requires-Dist: pandas
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- Requires-Dist: marshmallow
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- Requires-Dist: vfb-connect
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-
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- # VFBquery
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-
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- to setup requirements:
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- ```bash
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- pip install --upgrade vfbquery
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- ```
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-
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- To get term info for a term:
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- get_term_info(ID)
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-
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- e.g.
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- ```python
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- import vfbquery as vfb
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- ```
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- Class example:
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- ```python
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- vfb.get_term_info('FBbt_00003748', force_refresh=True)
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- ```
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- ```json
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- {
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- "Name": "medulla",
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- "Id": "FBbt_00003748",
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- "SuperTypes": [
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- "Entity",
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- "Class",
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- "Adult",
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- "Anatomy",
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- "Nervous_system",
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- "Synaptic_neuropil",
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- "Synaptic_neuropil_domain",
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- "Visual_system"
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- ],
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- "Meta": {
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- "Name": "[medulla](FBbt_00003748)",
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- "Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
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- "Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
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- "Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
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- "Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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- },
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- "Tags": [
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- "Adult",
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- "Nervous_system",
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- "Synaptic_neuropil_domain",
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- "Visual_system"
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- ],
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- "Queries": [
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- {
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- "query": "ListAllAvailableImages",
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- "label": "List all available images of medulla",
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- "function": "get_instances",
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- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
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- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
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- }
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- },
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- "tags": {
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- "title": "Gross Types",
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- "type": "tags",
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- "order": 3
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "VFB_00102107",
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- "label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018U')](VFB_00101567,VFB_00102107)"
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- },
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- {
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- "id": "VFB_00101385",
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- "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
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- },
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- {
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- "id": "VFB_00030810",
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- "label": "[medulla on adult brain template Ito2014](VFB_00030810)",
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- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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- "thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
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- },
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- {
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- "id": "VFB_00030624",
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- "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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- "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
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- }
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- ]
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- },
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- "output_format": "table",
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- "count": 4
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- },
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- {
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- "query": "NeuronsPartHere",
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- "label": "Neurons with some part in medulla",
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- "function": "get_neurons_with_part_in",
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- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
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- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
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- }
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- },
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- "tags": {
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- "title": "Tags",
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- "type": "tags",
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- "order": 2
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "FBbt_20011362",
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- "label": "[Cm1](FBbt_20011362)",
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- "tags": "Adult|Cholinergic|Nervous_system|Visual_system",
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- "thumbnail": "[![FlyWire:720575940621358986 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw08/9799/VFB_00101567/thumbnail.png 'FlyWire:720575940621358986 aligned to JRC2018U')](FBbt_20011362)"
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- },
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- {
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- "id": "FBbt_20011363",
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- "label": "[Cm10](FBbt_20011363)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![FlyWire:720575940629671015 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw11/8027/VFB_00101567/thumbnail.png 'FlyWire:720575940629671015 aligned to JRC2018U')](FBbt_20011363)"
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- },
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- {
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- "id": "FBbt_20011364",
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- "label": "[Cm15](FBbt_20011364)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![FlyWire:720575940611214802 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw11/4277/VFB_00101567/thumbnail.png 'FlyWire:720575940611214802 aligned to JRC2018U')](FBbt_20011364)"
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- },
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- {
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- "id": "FBbt_20011365",
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- "label": "[Cm16](FBbt_20011365)",
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- "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
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- "thumbnail": "[![FlyWire:720575940631561002 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw09/9899/VFB_00101567/thumbnail.png 'FlyWire:720575940631561002 aligned to JRC2018U')](FBbt_20011365)"
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- },
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- {
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- "id": "FBbt_20011366",
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- "label": "[Cm17](FBbt_20011366)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![FlyWire:720575940624043817 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1609/VFB_00101567/thumbnail.png 'FlyWire:720575940624043817 aligned to JRC2018U')](FBbt_20011366)"
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- }
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- ]
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- },
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- "output_format": "table",
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- "count": 472
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- },
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- {
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- "query": "NeuronsSynaptic",
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- "label": "Neurons with synaptic terminals in medulla",
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- "function": "get_neurons_with_synapses_in",
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- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
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- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
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- }
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- },
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- "tags": {
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- "title": "Tags",
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- "type": "tags",
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- "order": 2
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "FBbt_00053385",
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- "label": "[medulla intrinsic neuron](FBbt_00053385)",
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- "tags": "Adult|Nervous_system|Neuron|Visual_system",
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- "thumbnail": "[![ME.8543 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/0696/VFB_00101567/thumbnail.png 'ME.8543 aligned to JRC2018U')](FBbt_00053385)"
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- },
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- {
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- "id": "FBbt_00110033",
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- "label": "[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)",
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- "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
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- "thumbnail": ""
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- },
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- {
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- "id": "FBbt_00110142",
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- "label": "[OA-AL2i2](FBbt_00110142)",
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- "tags": "Adult|Nervous_system|Octopaminergic",
294
- "thumbnail": "[![SPS.ME.7 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw04/2336/VFB_00101567/thumbnail.png 'SPS.ME.7 aligned to JRC2018U')](FBbt_00110142)"
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- },
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- {
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- "id": "FBbt_00110143",
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- "label": "[OA-AL2i3](FBbt_00110143)",
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- "tags": "Adult|Nervous_system|Octopaminergic|Visual_system",
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- "thumbnail": "[![ME.970 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw03/6562/VFB_00101567/thumbnail.png 'ME.970 aligned to JRC2018U')](FBbt_00110143)"
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- },
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- {
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- "id": "FBbt_00110144",
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- "label": "[OA-AL2i4](FBbt_00110144)",
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- "tags": "Adult|Nervous_system|Octopaminergic",
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- "thumbnail": "[![OA-AL2i4_R (JRC_OpticLobe:10677) aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/450b/VFB_00101567/thumbnail.png 'OA-AL2i4_R (JRC_OpticLobe:10677) aligned to JRC2018U')](FBbt_00110144)"
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- }
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- ]
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- },
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- "output_format": "table",
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- "count": 465
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- },
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- {
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- "query": "NeuronsPresynapticHere",
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- "label": "Neurons with presynaptic terminals in medulla",
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- "function": "get_neurons_with_presynaptic_terminals_in",
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- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
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- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
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- }
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- },
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- "tags": {
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- "title": "Tags",
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- "type": "tags",
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- "order": 2
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "FBbt_02000003",
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- "label": "[yR8](FBbt_02000003)",
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- "tags": "Adult|Cholinergic|Histaminergic|Nervous_system|Sensory_neuron|Visual_system",
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- "thumbnail": "[![R8y_R (JRC_OpticLobe:203836) aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/48b9/VFB_00101567/thumbnail.png 'R8y_R (JRC_OpticLobe:203836) aligned to JRC2018U')](FBbt_02000003)"
367
- },
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- {
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- "id": "FBbt_20007253",
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- "label": "[CB3838](FBbt_20007253)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![ME.38 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2030/VFB_00101567/thumbnail.png 'ME.38 aligned to JRC2018U')](FBbt_20007253)"
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- },
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- {
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- "id": "FBbt_20007256",
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- "label": "[Cm31a](FBbt_20007256)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![ME.5 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2043/VFB_00101567/thumbnail.png 'ME.5 aligned to JRC2018U')](FBbt_20007256)"
379
- },
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- {
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- "id": "FBbt_20007257",
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- "label": "[Mi19](FBbt_20007257)",
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- "tags": "Adult|Nervous_system|Neuron|Visual_system",
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- "thumbnail": "[![ME.5256 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1990/VFB_00101567/thumbnail.png 'ME.5256 aligned to JRC2018U')](FBbt_20007257)"
385
- },
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- {
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- "id": "FBbt_20007258",
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- "label": "[Cm35](FBbt_20007258)",
389
- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
390
- "thumbnail": "[![ME.18 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2034/VFB_00101567/thumbnail.png 'ME.18 aligned to JRC2018U')](FBbt_20007258)"
391
- }
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- ]
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- },
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- "output_format": "table",
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- "count": 253
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- },
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- {
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- "query": "NeuronsPostsynapticHere",
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- "label": "Neurons with postsynaptic terminals in medulla",
400
- "function": "get_neurons_with_postsynaptic_terminals_in",
401
- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
410
- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
432
- }
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- },
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- "tags": {
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- "title": "Tags",
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- "type": "tags",
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- "order": 2
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "FBbt_20007253",
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- "label": "[CB3838](FBbt_20007253)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![ME.38 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2030/VFB_00101567/thumbnail.png 'ME.38 aligned to JRC2018U')](FBbt_20007253)"
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- },
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- {
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- "id": "FBbt_20007256",
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- "label": "[Cm31a](FBbt_20007256)",
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- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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- "thumbnail": "[![ME.5 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2043/VFB_00101567/thumbnail.png 'ME.5 aligned to JRC2018U')](FBbt_20007256)"
457
- },
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- {
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- "id": "FBbt_20007257",
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- "label": "[Mi19](FBbt_20007257)",
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- "tags": "Adult|Nervous_system|Neuron|Visual_system",
462
- "thumbnail": "[![ME.5256 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1990/VFB_00101567/thumbnail.png 'ME.5256 aligned to JRC2018U')](FBbt_20007257)"
463
- },
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- {
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- "id": "FBbt_20007258",
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- "label": "[Cm35](FBbt_20007258)",
467
- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
468
- "thumbnail": "[![ME.18 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2034/VFB_00101567/thumbnail.png 'ME.18 aligned to JRC2018U')](FBbt_20007258)"
469
- },
470
- {
471
- "id": "FBbt_20007259",
472
- "label": "[Cm32](FBbt_20007259)",
473
- "tags": "Adult|GABAergic|Nervous_system|Visual_system",
474
- "thumbnail": "[![ME.278 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1913/VFB_00101567/thumbnail.png 'ME.278 aligned to JRC2018U')](FBbt_20007259)"
475
- }
476
- ]
477
- },
478
- "output_format": "table",
479
- "count": 331
480
- },
481
- {
482
- "query": "PartsOf",
483
- "label": "Parts of medulla",
484
- "function": "get_parts_of",
485
- "takes": {
486
- "short_form": {
487
- "$and": [
488
- "Class"
489
- ]
490
- },
491
- "default": {
492
- "short_form": "FBbt_00003748"
493
- }
494
- },
495
- "preview": 5,
496
- "preview_columns": [
497
- "id",
498
- "label",
499
- "tags",
500
- "thumbnail"
501
- ],
502
- "preview_results": {
503
- "headers": {
504
- "id": {
505
- "title": "Add",
506
- "type": "selection_id",
507
- "order": -1
508
- },
509
- "label": {
510
- "title": "Name",
511
- "type": "markdown",
512
- "order": 0,
513
- "sort": {
514
- "0": "Asc"
515
- }
516
- },
517
- "tags": {
518
- "title": "Tags",
519
- "type": "tags",
520
- "order": 2
521
- },
522
- "thumbnail": {
523
- "title": "Thumbnail",
524
- "type": "markdown",
525
- "order": 9
526
- }
527
- },
528
- "rows": [
529
- {
530
- "id": "FBbt_00003750",
531
- "label": "[medulla layer M1](FBbt_00003750)",
532
- "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
533
- "thumbnail": ""
534
- },
535
- {
536
- "id": "FBbt_00003753",
537
- "label": "[medulla layer M4](FBbt_00003753)",
538
- "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
539
- "thumbnail": ""
540
- },
541
- {
542
- "id": "FBbt_00003754",
543
- "label": "[medulla layer M5](FBbt_00003754)",
544
- "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
545
- "thumbnail": ""
546
- },
547
- {
548
- "id": "FBbt_00003758",
549
- "label": "[medulla layer M8](FBbt_00003758)",
550
- "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
551
- "thumbnail": ""
552
- },
553
- {
554
- "id": "FBbt_00003759",
555
- "label": "[medulla layer M9](FBbt_00003759)",
556
- "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
557
- "thumbnail": ""
558
- }
559
- ]
560
- },
561
- "output_format": "table",
562
- "count": 28
563
- },
564
- {
565
- "query": "SubclassesOf",
566
- "label": "Subclasses of medulla",
567
- "function": "get_subclasses_of",
568
- "takes": {
569
- "short_form": {
570
- "$and": [
571
- "Class"
572
- ]
573
- },
574
- "default": {
575
- "short_form": "FBbt_00003748"
576
- }
577
- },
578
- "preview": 5,
579
- "preview_columns": [
580
- "id",
581
- "label",
582
- "tags",
583
- "thumbnail"
584
- ],
585
- "preview_results": {
586
- "headers": {
587
- "id": {
588
- "title": "Add",
589
- "type": "selection_id",
590
- "order": -1
591
- },
592
- "label": {
593
- "title": "Name",
594
- "type": "markdown",
595
- "order": 0,
596
- "sort": {
597
- "0": "Asc"
598
- }
599
- },
600
- "tags": {
601
- "title": "Tags",
602
- "type": "tags",
603
- "order": 2
604
- },
605
- "thumbnail": {
606
- "title": "Thumbnail",
607
- "type": "markdown",
608
- "order": 9
609
- }
610
- }
611
- },
612
- "output_format": "table",
613
- "count": 0
614
- },
615
- {
616
- "query": "TractsNervesInnervatingHere",
617
- "label": "Tracts/nerves innervating medulla",
618
- "function": "get_tracts_nerves_innervating_here",
619
- "takes": {
620
- "short_form": {
621
- "$or": [
622
- {
623
- "$and": [
624
- "Class",
625
- "Synaptic_neuropil"
626
- ]
627
- },
628
- {
629
- "$and": [
630
- "Class",
631
- "Synaptic_neuropil_domain"
632
- ]
633
- }
634
- ]
635
- },
636
- "default": {
637
- "short_form": "FBbt_00003748"
638
- }
639
- },
640
- "preview": 5,
641
- "preview_columns": [
642
- "id",
643
- "label",
644
- "tags",
645
- "thumbnail"
646
- ],
647
- "preview_results": {
648
- "headers": {
649
- "id": {
650
- "title": "Add",
651
- "type": "selection_id",
652
- "order": -1
653
- },
654
- "label": {
655
- "title": "Name",
656
- "type": "markdown",
657
- "order": 0,
658
- "sort": {
659
- "0": "Asc"
660
- }
661
- },
662
- "tags": {
663
- "title": "Tags",
664
- "type": "tags",
665
- "order": 2
666
- },
667
- "thumbnail": {
668
- "title": "Thumbnail",
669
- "type": "markdown",
670
- "order": 9
671
- }
672
- },
673
- "rows": [
674
- {
675
- "id": "FBbt_00003922",
676
- "label": "[second optic chiasma](FBbt_00003922)",
677
- "tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
678
- "thumbnail": ""
679
- },
680
- {
681
- "id": "FBbt_00005810",
682
- "label": "[first optic chiasma](FBbt_00005810)",
683
- "tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
684
- "thumbnail": ""
685
- },
686
- {
687
- "id": "FBbt_00007427",
688
- "label": "[posterior optic commissure](FBbt_00007427)",
689
- "tags": "Adult|Nervous_system|Neuron_projection_bundle",
690
- "thumbnail": "[![posterior optic commissure on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0828/VFB_00030786/thumbnail.png 'posterior optic commissure on adult brain template Ito2014 aligned to adult brain template Ito2014')](FBbt_00007427)"
691
- }
692
- ]
693
- },
694
- "output_format": "table",
695
- "count": 3
696
- },
697
- {
698
- "query": "LineageClonesIn",
699
- "label": "Lineage clones found in medulla",
700
- "function": "get_lineage_clones_in",
701
- "takes": {
702
- "short_form": {
703
- "$and": [
704
- "Class",
705
- "Synaptic_neuropil"
706
- ]
707
- },
708
- "default": {
709
- "short_form": "FBbt_00003748"
710
- }
711
- },
712
- "preview": 5,
713
- "preview_columns": [
714
- "id",
715
- "label",
716
- "tags",
717
- "thumbnail"
718
- ],
719
- "preview_results": {
720
- "headers": {
721
- "id": {
722
- "title": "Add",
723
- "type": "selection_id",
724
- "order": -1
725
- },
726
- "label": {
727
- "title": "Name",
728
- "type": "markdown",
729
- "order": 0,
730
- "sort": {
731
- "0": "Asc"
732
- }
733
- },
734
- "tags": {
735
- "title": "Tags",
736
- "type": "tags",
737
- "order": 2
738
- },
739
- "thumbnail": {
740
- "title": "Thumbnail",
741
- "type": "markdown",
742
- "order": 9
743
- }
744
- },
745
- "rows": [
746
- {
747
- "id": "FBbt_00050013",
748
- "label": "[adult VPNl&d1 lineage clone](FBbt_00050013)",
749
- "tags": "Adult|Clone",
750
- "thumbnail": "[![VPNl&d1 clone of Ito 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0253/VFB_00101567/thumbnail.png 'VPNl&d1 clone of Ito 2013 aligned to JRC2018U')](FBbt_00050013)"
751
- },
752
- {
753
- "id": "FBbt_00050019",
754
- "label": "[adult DM1 lineage clone](FBbt_00050019)",
755
- "tags": "Adult|Clone|lineage_DPMm1",
756
- "thumbnail": "[![DM1 clone of Yu 2013 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0002/0006/VFB_00017894/thumbnail.png 'DM1 clone of Yu 2013 aligned to JFRC2')](FBbt_00050019)"
757
- },
758
- {
759
- "id": "FBbt_00050051",
760
- "label": "[adult VESa2 lineage clone](FBbt_00050051)",
761
- "tags": "Adult|Clone|lineage_BAlp1",
762
- "thumbnail": "[![PSa1 clone of Ito 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0206/VFB_00101567/thumbnail.png 'PSa1 clone of Ito 2013 aligned to JRC2018U')](FBbt_00050051)"
763
- },
764
- {
765
- "id": "FBbt_00050167",
766
- "label": "[adult LALv1 lineage clone](FBbt_00050167)",
767
- "tags": "Adult|Clone|lineage_BAmv1",
768
- "thumbnail": "[![LALv1 clone of Yu 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0056/VFB_00101567/thumbnail.png 'LALv1 clone of Yu 2013 aligned to JRC2018U')](FBbt_00050167)"
769
- },
770
- {
771
- "id": "FBbt_00050229",
772
- "label": "[adult SLPpl1 lineage clone](FBbt_00050229)",
773
- "tags": "Adult|Clone|lineage_DPLl1",
774
- "thumbnail": "[![SLPpl1 clone of Yu 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0077/VFB_00101567/thumbnail.png 'SLPpl1 clone of Yu 2013 aligned to JRC2018U')](FBbt_00050229)"
775
- }
776
- ]
777
- },
778
- "output_format": "table",
779
- "count": 7
780
- },
781
- {
782
- "query": "ImagesNeurons",
783
- "label": "Images of neurons with some part in medulla",
784
- "function": "get_images_neurons",
785
- "takes": {
786
- "short_form": {
787
- "$or": [
788
- {
789
- "$and": [
790
- "Class",
791
- "Synaptic_neuropil"
792
- ]
793
- },
794
- {
795
- "$and": [
796
- "Class",
797
- "Synaptic_neuropil_domain"
798
- ]
799
- }
800
- ]
801
- },
802
- "default": {
803
- "short_form": "FBbt_00003748"
804
- }
805
- },
806
- "preview": 5,
807
- "preview_columns": [
808
- "id",
809
- "label",
810
- "tags",
811
- "thumbnail"
812
- ],
813
- "preview_results": {
814
- "headers": {
815
- "id": {
816
- "title": "Add",
817
- "type": "selection_id",
818
- "order": -1
819
- },
820
- "label": {
821
- "title": "Name",
822
- "type": "markdown",
823
- "order": 0,
824
- "sort": {
825
- "0": "Asc"
826
- }
827
- },
828
- "tags": {
829
- "title": "Tags",
830
- "type": "tags",
831
- "order": 2
832
- },
833
- "thumbnail": {
834
- "title": "Thumbnail",
835
- "type": "markdown",
836
- "order": 9
837
- }
838
- },
839
- "rows": [
840
- {
841
- "id": "VFB_fw113167",
842
- "label": "[ME.11974](VFB_fw113167)",
843
- "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
844
- "thumbnail": ""
845
- },
846
- {
847
- "id": "VFB_fw113165",
848
- "label": "[ME.17216](VFB_fw113165)",
849
- "tags": "Adult|GABAergic|Nervous_system|Visual_system|secondary_neuron",
850
- "thumbnail": ""
851
- },
852
- {
853
- "id": "VFB_fw113168",
854
- "label": "[ME.31287](VFB_fw113168)",
855
- "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
856
- "thumbnail": ""
857
- },
858
- {
859
- "id": "VFB_fw113166",
860
- "label": "[ME.4619](VFB_fw113166)",
861
- "tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
862
- "thumbnail": ""
863
- },
864
- {
865
- "id": "VFB_fw113169",
866
- "label": "[ME.26172](VFB_fw113169)",
867
- "tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
868
- "thumbnail": ""
869
- }
870
- ]
871
- },
872
- "output_format": "table",
873
- "count": 119989
874
- },
875
- {
876
- "query": "ExpressionOverlapsHere",
877
- "label": "Expression patterns overlapping medulla",
878
- "function": "get_expression_overlaps_here",
879
- "takes": {
880
- "short_form": {
881
- "$and": [
882
- "Class",
883
- "Anatomy"
884
- ]
885
- },
886
- "default": {
887
- "short_form": "FBbt_00003748"
888
- }
889
- },
890
- "preview": 5,
891
- "preview_columns": [
892
- "id",
893
- "name",
894
- "tags",
895
- "pubs"
896
- ],
897
- "preview_results": {
898
- "headers": {
899
- "id": {
900
- "title": "ID",
901
- "type": "selection_id",
902
- "order": -1
903
- },
904
- "name": {
905
- "title": "Expression Pattern",
906
- "type": "markdown",
907
- "order": 0
908
- },
909
- "tags": {
910
- "title": "Tags",
911
- "type": "tags",
912
- "order": 1
913
- },
914
- "pubs": {
915
- "title": "Publications",
916
- "type": "metadata",
917
- "order": 2
918
- }
919
- },
920
- "rows": [
921
- {
922
- "id": "VFBexp_FBti0182065",
923
- "name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
924
- "tags": "Expression_pattern",
925
- "pubs": [
926
- {
927
- "core": {
928
- "iri": "http://flybase.org/reports/FBrf0230454",
929
- "symbol": "",
930
- "types": [
931
- "Entity",
932
- "Individual",
933
- "pub"
934
- ],
935
- "short_form": "FBrf0230454",
936
- "label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
937
- },
938
- "FlyBase": "FBrf0230454",
939
- "PubMed": "26687361",
940
- "DOI": "10.1016/j.cell.2015.11.022"
941
- }
942
- ]
943
- },
944
- {
945
- "id": "VFBexp_FBti0145260",
946
- "name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
947
- "tags": "Expression_pattern",
948
- "pubs": [
949
- {
950
- "core": {
951
- "iri": "http://flybase.org/reports/FBrf0230454",
952
- "symbol": "",
953
- "types": [
954
- "Entity",
955
- "Individual",
956
- "pub"
957
- ],
958
- "short_form": "FBrf0230454",
959
- "label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
960
- },
961
- "FlyBase": "FBrf0230454",
962
- "PubMed": "26687361",
963
- "DOI": "10.1016/j.cell.2015.11.022"
964
- }
965
- ]
966
- },
967
- {
968
- "id": "VFBexp_FBti0143533",
969
- "name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
970
- "tags": "Expression_pattern",
971
- "pubs": [
972
- {
973
- "core": {
974
- "iri": "http://flybase.org/reports/FBrf0215202",
975
- "symbol": "",
976
- "types": [
977
- "Entity",
978
- "Individual",
979
- "pub"
980
- ],
981
- "short_form": "FBrf0215202",
982
- "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
983
- },
984
- "FlyBase": "FBrf0215202",
985
- "PubMed": "",
986
- "DOI": ""
987
- }
988
- ]
989
- },
990
- {
991
- "id": "VFBexp_FBti0143547",
992
- "name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
993
- "tags": "Expression_pattern",
994
- "pubs": [
995
- {
996
- "core": {
997
- "iri": "http://flybase.org/reports/FBrf0215202",
998
- "symbol": "",
999
- "types": [
1000
- "Entity",
1001
- "Individual",
1002
- "pub"
1003
- ],
1004
- "short_form": "FBrf0215202",
1005
- "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
1006
- },
1007
- "FlyBase": "FBrf0215202",
1008
- "PubMed": "",
1009
- "DOI": ""
1010
- }
1011
- ]
1012
- },
1013
- {
1014
- "id": "VFBexp_FBti0143524",
1015
- "name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
1016
- "tags": "Expression_pattern",
1017
- "pubs": [
1018
- {
1019
- "core": {
1020
- "iri": "http://flybase.org/reports/FBrf0215202",
1021
- "symbol": "",
1022
- "types": [
1023
- "Entity",
1024
- "Individual",
1025
- "pub"
1026
- ],
1027
- "short_form": "FBrf0215202",
1028
- "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
1029
- },
1030
- "FlyBase": "FBrf0215202",
1031
- "PubMed": "",
1032
- "DOI": ""
1033
- }
1034
- ]
1035
- }
1036
- ]
1037
- },
1038
- "output_format": "table",
1039
- "count": 2339
1040
- },
1041
- {
1042
- "query": "TransgeneExpressionHere",
1043
- "label": "Transgene expression in medulla",
1044
- "function": "get_transgene_expression_here",
1045
- "takes": {
1046
- "short_form": {
1047
- "$and": [
1048
- "Class",
1049
- "Nervous_system",
1050
- "Anatomy"
1051
- ]
1052
- },
1053
- "default": {
1054
- "short_form": "FBbt_00003748"
1055
- }
1056
- },
1057
- "preview": 5,
1058
- "preview_columns": [
1059
- "id",
1060
- "name",
1061
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1062
- ],
1063
- "preview_results": {
1064
- "headers": {
1065
- "id": {
1066
- "title": "ID",
1067
- "type": "selection_id",
1068
- "order": -1
1069
- },
1070
- "name": {
1071
- "title": "Expression Pattern",
1072
- "type": "markdown",
1073
- "order": 0
1074
- },
1075
- "tags": {
1076
- "title": "Tags",
1077
- "type": "tags",
1078
- "order": 1
1079
- }
1080
- },
1081
- "rows": [
1082
- {
1083
- "id": "VFBexp_FBti0182065",
1084
- "name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
1085
- "tags": "Expression_pattern"
1086
- },
1087
- {
1088
- "id": "VFBexp_FBti0145260",
1089
- "name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
1090
- "tags": "Expression_pattern"
1091
- },
1092
- {
1093
- "id": "VFBexp_FBti0143533",
1094
- "name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
1095
- "tags": "Expression_pattern"
1096
- },
1097
- {
1098
- "id": "VFBexp_FBti0143547",
1099
- "name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
1100
- "tags": "Expression_pattern"
1101
- },
1102
- {
1103
- "id": "VFBexp_FBti0143524",
1104
- "name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
1105
- "tags": "Expression_pattern"
1106
- }
1107
- ]
1108
- },
1109
- "output_format": "table",
1110
- "count": 2339
1111
- }
1112
- ],
1113
- "IsIndividual": False,
1114
- "IsClass": True,
1115
- "Examples": {
1116
- "VFB_00101384": [
1117
- {
1118
- "id": "VFB_00101385",
1119
- "label": "ME(R) on JRC_FlyEM_Hemibrain",
1120
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
1121
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
1122
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
1123
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
1124
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
1125
- }
1126
- ],
1127
- "VFB_00101567": [
1128
- {
1129
- "id": "VFB_00102107",
1130
- "label": "ME on JRC2018Unisex adult brain",
1131
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
1132
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
1133
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
1134
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
1135
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
1136
- }
1137
- ],
1138
- "VFB_00017894": [
1139
- {
1140
- "id": "VFB_00030624",
1141
- "label": "medulla on adult brain template JFRC2",
1142
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
1143
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
1144
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
1145
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
1146
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
1147
- }
1148
- ],
1149
- "VFB_00030786": [
1150
- {
1151
- "id": "VFB_00030810",
1152
- "label": "medulla on adult brain template Ito2014",
1153
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
1154
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
1155
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
1156
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
1157
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
1158
- }
1159
- ]
1160
- },
1161
- "IsTemplate": False,
1162
- "Synonyms": [
1163
- {
1164
- "label": "ME",
1165
- "scope": "has_exact_synonym",
1166
- "type": "",
1167
- "publication": "[Ito et al., 2014](FBrf0224194)"
1168
- },
1169
- {
1170
- "label": "Med",
1171
- "scope": "has_exact_synonym",
1172
- "type": "",
1173
- "publication": "[Chiang et al., 2011](FBrf0212704)"
1174
- },
1175
- {
1176
- "label": "optic medulla",
1177
- "scope": "has_exact_synonym",
1178
- "type": "",
1179
- "publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
1180
- },
1181
- {
1182
- "label": "m",
1183
- "scope": "has_related_synonym",
1184
- "type": "",
1185
- "publication": ""
1186
- }
1187
- ]
1188
- }
1189
- ```
1190
-
1191
- Individual example:
1192
- ```python
1193
- vfb.get_term_info('VFB_00000001')
1194
- ```
1195
- ```json
1196
- {
1197
- "Name": "fru-M-200266",
1198
- "Id": "VFB_00000001",
1199
- "SuperTypes": [
1200
- "Entity",
1201
- "Individual",
1202
- "VFB",
1203
- "Neuron",
1204
- "Adult",
1205
- "Anatomy",
1206
- "Cell",
1207
- "Expression_pattern_fragment",
1208
- "Nervous_system",
1209
- "has_image",
1210
- "lineage_CM3",
1211
- "lineage_DM6",
1212
- "FlyCircuit",
1213
- "NBLAST"
1214
- ],
1215
- "Meta": {
1216
- "Name": "[fru-M-200266](VFB_00000001)",
1217
- "Description": "",
1218
- "Comment": "OutAge: Adult 5~15 days",
1219
- "Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
1220
- "Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
1221
- },
1222
- "Tags": [
1223
- "Adult",
1224
- "Expression_pattern_fragment",
1225
- "Neuron",
1226
- "lineage_CM3"
1227
- ],
1228
- "Queries": [
1229
- {
1230
- "query": "SimilarMorphologyTo",
1231
- "label": "Find similar neurons to fru-M-200266",
1232
- "function": "get_similar_neurons",
1233
- "takes": {
1234
- "short_form": {
1235
- "$and": [
1236
- "Individual",
1237
- "Neuron"
1238
- ]
1239
- },
1240
- "default": {
1241
- "neuron": "VFB_00000001",
1242
- "similarity_score": "NBLAST_score"
1243
- }
1244
- },
1245
- "preview": 5,
1246
- "preview_columns": [
1247
- "id",
1248
- "score",
1249
- "name",
1250
- "tags",
1251
- "thumbnail"
1252
- ],
1253
- "preview_results": {
1254
- "headers": {
1255
- "id": {
1256
- "title": "Add",
1257
- "type": "selection_id",
1258
- "order": -1
1259
- },
1260
- "score": {
1261
- "title": "Score",
1262
- "type": "numeric",
1263
- "order": 1,
1264
- "sort": {
1265
- "0": "Desc"
1266
- }
1267
- },
1268
- "name": {
1269
- "title": "Name",
1270
- "type": "markdown",
1271
- "order": 1,
1272
- "sort": {
1273
- "1": "Asc"
1274
- }
1275
- },
1276
- "tags": {
1277
- "title": "Tags",
1278
- "type": "tags",
1279
- "order": 2
1280
- },
1281
- "thumbnail": {
1282
- "title": "Thumbnail",
1283
- "type": "markdown",
1284
- "order": 9
1285
- }
1286
- },
1287
- "rows": [
1288
- {
1289
- "id": "VFB_00000333",
1290
- "score": "0.61",
1291
- "name": "[fru-M-000204](VFB_00000333)",
1292
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
1293
- "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
1294
- },
1295
- {
1296
- "id": "VFB_00000333",
1297
- "score": "0.61",
1298
- "name": "[fru-M-000204](VFB_00000333)",
1299
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
1300
- "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
1301
- },
1302
- {
1303
- "id": "VFB_00002439",
1304
- "score": "0.6",
1305
- "name": "[fru-M-900020](VFB_00002439)",
1306
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
1307
- "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
1308
- },
1309
- {
1310
- "id": "VFB_00002439",
1311
- "score": "0.6",
1312
- "name": "[fru-M-900020](VFB_00002439)",
1313
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
1314
- "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
1315
- },
1316
- {
1317
- "id": "VFB_00000845",
1318
- "score": "0.59",
1319
- "name": "[fru-M-100191](VFB_00000845)",
1320
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
1321
- "thumbnail": "[![fru-M-100191 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png 'fru-M-100191 aligned to JRC2018U')](VFB_00101567,VFB_00000845)"
1322
- }
1323
- ]
1324
- },
1325
- "output_format": "table",
1326
- "count": 60
1327
- }
1328
- ],
1329
- "IsIndividual": True,
1330
- "Images": {
1331
- "VFB_00017894": [
1332
- {
1333
- "id": "VFB_00000001",
1334
- "label": "fru-M-200266",
1335
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
1336
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
1337
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
1338
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
1339
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
1340
- "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
1341
- }
1342
- ],
1343
- "VFB_00101567": [
1344
- {
1345
- "id": "VFB_00000001",
1346
- "label": "fru-M-200266",
1347
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
1348
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
1349
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
1350
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
1351
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
1352
- "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
1353
- }
1354
- ]
1355
- },
1356
- "IsClass": False,
1357
- "IsTemplate": False,
1358
- "Licenses": {
1359
- "0": {
1360
- "iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
1361
- "short_form": "VFBlicense_FlyCircuit_License",
1362
- "label": "FlyCircuit License",
1363
- "icon": "",
1364
- "source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
1365
- "source_iri": "http://virtualflybrain.org/reports/Chiang2010"
1366
- }
1367
- }
1368
- }
1369
- ```
1370
-
1371
- Template example:
1372
- ```python
1373
- vfb.get_term_info('VFB_00101567')
1374
- ```
1375
- ```json
1376
- {
1377
- "Name": "JRC2018U",
1378
- "Id": "VFB_00101567",
1379
- "SuperTypes": [
1380
- "Entity",
1381
- "Individual",
1382
- "VFB",
1383
- "Adult",
1384
- "Anatomy",
1385
- "Nervous_system",
1386
- "Template",
1387
- "has_image"
1388
- ],
1389
- "Meta": {
1390
- "Name": "[JRC2018Unisex](VFB_00101567)",
1391
- "Symbol": "[JRC2018U](VFB_00101567)",
1392
- "Description": "Janelia 2018 unisex, averaged adult brain template",
1393
- "Comment": "",
1394
- "Types": "[adult brain](FBbt_00003624)"
1395
- },
1396
- "Tags": [
1397
- "Adult",
1398
- "Nervous_system"
1399
- ],
1400
- "Queries": [],
1401
- "IsIndividual": True,
1402
- "Images": {
1403
- "VFB_00101567": [
1404
- {
1405
- "id": "VFB_00101567",
1406
- "label": "JRC2018Unisex",
1407
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
1408
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
1409
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
1410
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
1411
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
1412
- "index": 0,
1413
- "center": {
1414
- "X": 605.0,
1415
- "Y": 283.0,
1416
- "Z": 87.0
1417
- },
1418
- "extent": {
1419
- "X": 1211.0,
1420
- "Y": 567.0,
1421
- "Z": 175.0
1422
- },
1423
- "voxel": {
1424
- "X": 0.5189161,
1425
- "Y": 0.5189161,
1426
- "Z": 1.0
1427
- },
1428
- "orientation": "LPS"
1429
- }
1430
- ]
1431
- },
1432
- "IsClass": False,
1433
- "Examples": {},
1434
- "IsTemplate": True,
1435
- "Domains": {
1436
- "0": {
1437
- "id": "VFB_00101567",
1438
- "label": "JRC2018U",
1439
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
1440
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
1441
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
1442
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
1443
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
1444
- "index": 0,
1445
- "type_label": "adult brain",
1446
- "type_id": "FBbt_00003624"
1447
- },
1448
- "3": {
1449
- "id": "VFB_00102107",
1450
- "label": "ME on JRC2018Unisex adult brain",
1451
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
1452
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
1453
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
1454
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
1455
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj",
1456
- "index": 3,
1457
- "type_label": "medulla",
1458
- "type_id": "FBbt_00003748"
1459
- },
1460
- "4": {
1461
- "id": "VFB_00102108",
1462
- "label": "AME on JRC2018Unisex adult brain",
1463
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png",
1464
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png",
1465
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.nrrd",
1466
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.wlz",
1467
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume_man.obj",
1468
- "index": 4,
1469
- "type_label": "accessory medulla",
1470
- "type_id": "FBbt_00045003"
1471
- },
1472
- "5": {
1473
- "id": "VFB_00102109",
1474
- "label": "LO on JRC2018Unisex adult brain",
1475
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png",
1476
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png",
1477
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.nrrd",
1478
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.wlz",
1479
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume_man.obj",
1480
- "index": 5,
1481
- "type_label": "lobula",
1482
- "type_id": "FBbt_00003852"
1483
- },
1484
- "6": {
1485
- "id": "VFB_00102110",
1486
- "label": "LOP on JRC2018Unisex adult brain",
1487
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png",
1488
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png",
1489
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.nrrd",
1490
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.wlz",
1491
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume_man.obj",
1492
- "index": 6,
1493
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1494
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1495
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1496
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1497
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1498
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1502
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1503
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1504
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1505
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1506
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1507
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1508
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1509
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1510
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1511
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1512
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1513
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1514
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1515
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1516
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1517
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1518
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1519
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1520
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1521
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1522
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1523
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1524
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1525
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1526
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1527
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1528
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1529
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1530
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1531
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1532
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1533
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1534
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1535
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1536
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1537
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1538
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1539
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1540
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1541
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1542
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1543
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1544
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1545
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1546
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1547
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1548
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1549
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1550
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1551
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1552
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1553
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1554
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1555
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1556
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1557
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1558
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1559
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1560
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1561
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1562
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1563
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1564
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1565
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1566
- "type_id": "FBbt_00013694"
1567
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1568
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1569
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1570
- "label": "gL on JRC2018Unisex adult brain",
1571
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1572
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1573
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1574
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1575
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1576
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1577
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1578
- "type_id": "FBbt_00013695"
1579
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1580
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1581
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1582
- "label": "FB on JRC2018Unisex adult brain",
1583
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1584
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1585
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1586
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1587
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1588
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1589
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1590
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1591
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1592
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1593
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1594
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1595
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1596
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1597
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1598
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1599
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1600
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1601
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1602
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1603
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1604
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1605
- "id": "VFB_00102137",
1606
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1607
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1608
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1609
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1610
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1611
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1612
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1613
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1614
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1615
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1616
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1617
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1618
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1619
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1620
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1621
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1622
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1623
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1624
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1625
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1626
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1627
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1628
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1629
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1630
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1631
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1632
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1633
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1634
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1635
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1636
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1637
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1638
- "type_id": "FBbt_00003681"
1639
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1640
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1641
- "id": "VFB_00102141",
1642
- "label": "AOTU on JRC2018Unisex adult brain",
1643
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1644
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1645
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1646
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1647
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1648
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1649
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1650
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1651
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1652
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1653
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1654
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1655
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1656
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1657
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1658
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1659
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1660
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1661
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1662
- "type_id": "FBbt_00040043"
1663
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1664
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1665
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1666
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1667
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1668
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1669
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1670
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1671
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1672
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1673
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1674
- "type_id": "FBbt_00040042"
1675
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1676
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1677
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1678
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1679
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1680
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1681
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1682
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1683
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1684
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1685
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1686
- "type_id": "FBbt_00040044"
1687
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1688
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1689
- "id": "VFB_00102154",
1690
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1691
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1692
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1693
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1694
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1695
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1696
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1697
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1698
- "type_id": "FBbt_00045027"
1699
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1700
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1701
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1702
- "label": "LH on JRC2018Unisex adult brain",
1703
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1704
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1705
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1706
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1707
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1708
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1709
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1710
- "type_id": "FBbt_00007053"
1711
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1712
- "29": {
1713
- "id": "VFB_00102162",
1714
- "label": "SLP on JRC2018Unisex adult brain",
1715
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1716
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1717
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1718
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1719
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1720
- "index": 29,
1721
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1722
- "type_id": "FBbt_00007054"
1723
- },
1724
- "30": {
1725
- "id": "VFB_00102164",
1726
- "label": "SIP on JRC2018Unisex adult brain",
1727
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnail.png",
1728
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1729
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1730
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1731
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1732
- "index": 30,
1733
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1734
- "type_id": "FBbt_00045032"
1735
- },
1736
- "31": {
1737
- "id": "VFB_00102170",
1738
- "label": "SMP on JRC2018Unisex adult brain",
1739
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnail.png",
1740
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnailT.png",
1741
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1742
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1743
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1744
- "index": 31,
1745
- "type_label": "superior medial protocerebrum",
1746
- "type_id": "FBbt_00007055"
1747
- },
1748
- "32": {
1749
- "id": "VFB_00102171",
1750
- "label": "CRE on JRC2018Unisex adult brain",
1751
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnail.png",
1752
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnailT.png",
1753
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1754
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1755
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1756
- "index": 32,
1757
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1758
- "type_id": "FBbt_00045037"
1759
- },
1760
- "33": {
1761
- "id": "VFB_00102174",
1762
- "label": "ROB on JRC2018Unisex adult brain",
1763
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnail.png",
1764
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnailT.png",
1765
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1766
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1767
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1768
- "index": 33,
1769
- "type_label": "adult round body",
1770
- "type_id": "FBbt_00048509"
1771
- },
1772
- "34": {
1773
- "id": "VFB_00102175",
1774
- "label": "RUB on JRC2018Unisex adult brain",
1775
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1776
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnailT.png",
1777
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume.nrrd",
1778
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume.wlz",
1779
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume_man.obj",
1780
- "index": 34,
1781
- "type_label": "rubus",
1782
- "type_id": "FBbt_00040038"
1783
- },
1784
- "35": {
1785
- "id": "VFB_00102176",
1786
- "label": "SCL on JRC2018Unisex adult brain",
1787
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnail.png",
1788
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnailT.png",
1789
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume.nrrd",
1790
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume.wlz",
1791
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume_man.obj",
1792
- "index": 35,
1793
- "type_label": "superior clamp",
1794
- "type_id": "FBbt_00040048"
1795
- },
1796
- "36": {
1797
- "id": "VFB_00102179",
1798
- "label": "ICL on JRC2018Unisex adult brain",
1799
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnail.png",
1800
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnailT.png",
1801
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume.nrrd",
1802
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume.wlz",
1803
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume_man.obj",
1804
- "index": 36,
1805
- "type_label": "inferior clamp",
1806
- "type_id": "FBbt_00040049"
1807
- },
1808
- "37": {
1809
- "id": "VFB_00102185",
1810
- "label": "IB on JRC2018Unisex adult brain",
1811
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnail.png",
1812
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnailT.png",
1813
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/volume.nrrd",
1814
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/volume.wlz",
1815
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/volume_man.obj",
1816
- "index": 37,
1817
- "type_label": "inferior bridge",
1818
- "type_id": "FBbt_00040050"
1819
- },
1820
- "38": {
1821
- "id": "VFB_00102190",
1822
- "label": "ATL on JRC2018Unisex adult brain",
1823
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnail.png",
1824
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnailT.png",
1825
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/volume.nrrd",
1826
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/volume.wlz",
1827
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/volume_man.obj",
1828
- "index": 38,
1829
- "type_label": "antler",
1830
- "type_id": "FBbt_00045039"
1831
- },
1832
- "39": {
1833
- "id": "VFB_00102201",
1834
- "label": "AL on JRC2018Unisex adult brain",
1835
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnail.png",
1836
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnailT.png",
1837
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/volume.nrrd",
1838
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/volume.wlz",
1839
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/volume_man.obj",
1840
- "index": 39,
1841
- "type_label": "adult antennal lobe",
1842
- "type_id": "FBbt_00007401"
1843
- },
1844
- "40": {
1845
- "id": "VFB_00102212",
1846
- "label": "VES on JRC2018Unisex adult brain",
1847
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnail.png",
1848
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnailT.png",
1849
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume.nrrd",
1850
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume.wlz",
1851
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume_man.obj",
1852
- "index": 40,
1853
- "type_label": "vest",
1854
- "type_id": "FBbt_00040041"
1855
- },
1856
- "41": {
1857
- "id": "VFB_00102213",
1858
- "label": "EPA on JRC2018Unisex adult brain",
1859
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnail.png",
1860
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnailT.png",
1861
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume.nrrd",
1862
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume.wlz",
1863
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume_man.obj",
1864
- "index": 41,
1865
- "type_label": "epaulette",
1866
- "type_id": "FBbt_00040040"
1867
- },
1868
- "42": {
1869
- "id": "VFB_00102214",
1870
- "label": "GOR on JRC2018Unisex adult brain",
1871
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnail.png",
1872
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnailT.png",
1873
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/volume.nrrd",
1874
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/volume.wlz",
1875
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/volume_man.obj",
1876
- "index": 42,
1877
- "type_label": "gorget",
1878
- "type_id": "FBbt_00040039"
1879
- },
1880
- "43": {
1881
- "id": "VFB_00102215",
1882
- "label": "SPS on JRC2018Unisex adult brain",
1883
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnail.png",
1884
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnailT.png",
1885
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume.nrrd",
1886
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume.wlz",
1887
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume_man.obj",
1888
- "index": 43,
1889
- "type_label": "superior posterior slope",
1890
- "type_id": "FBbt_00045040"
1891
- },
1892
- "44": {
1893
- "id": "VFB_00102218",
1894
- "label": "IPS on JRC2018Unisex adult brain",
1895
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnail.png",
1896
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnailT.png",
1897
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume.nrrd",
1898
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume.wlz",
1899
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume_man.obj",
1900
- "index": 44,
1901
- "type_label": "inferior posterior slope",
1902
- "type_id": "FBbt_00045046"
1903
- },
1904
- "45": {
1905
- "id": "VFB_00102271",
1906
- "label": "SAD on JRC2018Unisex adult brain",
1907
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnail.png",
1908
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnailT.png",
1909
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume.nrrd",
1910
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume.wlz",
1911
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume_man.obj",
1912
- "index": 45,
1913
- "type_label": "saddle",
1914
- "type_id": "FBbt_00045048"
1915
- },
1916
- "46": {
1917
- "id": "VFB_00102273",
1918
- "label": "AMMC on JRC2018Unisex adult brain",
1919
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnail.png",
1920
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnailT.png",
1921
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume.nrrd",
1922
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume.wlz",
1923
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume_man.obj",
1924
- "index": 46,
1925
- "type_label": "antennal mechanosensory and motor center",
1926
- "type_id": "FBbt_00003982"
1927
- },
1928
- "47": {
1929
- "id": "VFB_00102274",
1930
- "label": "FLA on JRC2018Unisex adult brain",
1931
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png",
1932
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png",
1933
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.nrrd",
1934
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.wlz",
1935
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume_man.obj",
1936
- "index": 47,
1937
- "type_label": "flange",
1938
- "type_id": "FBbt_00045050"
1939
- },
1940
- "48": {
1941
- "id": "VFB_00102275",
1942
- "label": "CAN on JRC2018Unisex adult brain",
1943
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png",
1944
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png",
1945
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.nrrd",
1946
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.wlz",
1947
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume_man.obj",
1948
- "index": 48,
1949
- "type_label": "cantle",
1950
- "type_id": "FBbt_00045051"
1951
- },
1952
- "49": {
1953
- "id": "VFB_00102276",
1954
- "label": "PRW on JRC2018Unisex adult brain",
1955
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png",
1956
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png",
1957
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.nrrd",
1958
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.wlz",
1959
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume_man.obj",
1960
- "index": 49,
1961
- "type_label": "prow",
1962
- "type_id": "FBbt_00040051"
1963
- },
1964
- "50": {
1965
- "id": "VFB_00102280",
1966
- "label": "GNG on JRC2018Unisex adult brain",
1967
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png",
1968
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png",
1969
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.nrrd",
1970
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.wlz",
1971
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume_man.obj",
1972
- "index": 50,
1973
- "type_label": "adult gnathal ganglion",
1974
- "type_id": "FBbt_00014013"
1975
- },
1976
- "59": {
1977
- "id": "VFB_00102281",
1978
- "label": "GA on JRC2018Unisex adult brain",
1979
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png",
1980
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png",
1981
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.nrrd",
1982
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.wlz",
1983
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume_man.obj",
1984
- "index": 59,
1985
- "type_label": "gall",
1986
- "type_id": "FBbt_00040060"
1987
- },
1988
- "94": {
1989
- "id": "VFB_00102282",
1990
- "label": "NO on JRC2018Unisex adult brain",
1991
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png",
1992
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png",
1993
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.nrrd",
1994
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.wlz",
1995
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume_man.obj",
1996
- "index": 94,
1997
- "type_label": "nodulus",
1998
- "type_id": "FBbt_00003680"
1999
- }
2000
- },
2001
- "Licenses": {
2002
- "0": {
2003
- "iri": "http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0",
2004
- "short_form": "VFBlicense_CC_BY_NC_SA_4_0",
2005
- "label": "CC-BY-NC-SA_4.0",
2006
- "icon": "http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png",
2007
- "source": "JRC 2018 templates & ROIs",
2008
- "source_iri": "http://virtualflybrain.org/reports/JRC2018"
2009
- }
2010
- },
2011
- "Publications": [],
2012
- "Synonyms": []
2013
- }
2014
- ```
2015
-
2016
- Queries:
2017
- ```python
2018
- vfb.get_instances('FBbt_00003748', return_dataframe=False)
2019
- ```
2020
- ```json
2021
- {
2022
- "headers": {
2023
- "id": {
2024
- "title": "Add",
2025
- "type": "selection_id",
2026
- "order": -1
2027
- },
2028
- "label": {
2029
- "title": "Name",
2030
- "type": "markdown",
2031
- "order": 0,
2032
- "sort": {
2033
- "0": "Asc"
2034
- }
2035
- },
2036
- "parent": {
2037
- "title": "Parent Type",
2038
- "type": "markdown",
2039
- "order": 1
2040
- },
2041
- "template": {
2042
- "title": "Template",
2043
- "type": "markdown",
2044
- "order": 4
2045
- },
2046
- "tags": {
2047
- "title": "Gross Types",
2048
- "type": "tags",
2049
- "order": 3
2050
- },
2051
- "source": {
2052
- "title": "Data Source",
2053
- "type": "markdown",
2054
- "order": 5
2055
- },
2056
- "source_id": {
2057
- "title": "Data Source",
2058
- "type": "markdown",
2059
- "order": 6
2060
- },
2061
- "dataset": {
2062
- "title": "Dataset",
2063
- "type": "markdown",
2064
- "order": 7
2065
- },
2066
- "license": {
2067
- "title": "License",
2068
- "type": "markdown",
2069
- "order": 8
2070
- },
2071
- "thumbnail": {
2072
- "title": "Thumbnail",
2073
- "type": "markdown",
2074
- "order": 9
2075
- }
2076
- },
2077
- "rows": [
2078
- {
2079
- "id": "VFB_00102107",
2080
- "label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
2081
- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
2082
- "parent": "[medulla](FBbt_00003748)",
2083
- "source": "",
2084
- "source_id": "",
2085
- "template": "[JRC2018U](VFB_00101567)",
2086
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
2087
- "license": "",
2088
- "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018U')](VFB_00101567,VFB_00102107)"
2089
- },
2090
- {
2091
- "id": "VFB_00101385",
2092
- "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
2093
- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
2094
- "parent": "[medulla](FBbt_00003748)",
2095
- "source": "",
2096
- "source_id": "",
2097
- "template": "[JRCFIB2018Fum](VFB_00101384)",
2098
- "dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
2099
- "license": "",
2100
- "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
2101
- },
2102
- {
2103
- "id": "VFB_00030810",
2104
- "label": "[medulla on adult brain template Ito2014](VFB_00030810)",
2105
- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
2106
- "parent": "[medulla](FBbt_00003748)",
2107
- "source": "",
2108
- "source_id": "",
2109
- "template": "[adult brain template Ito2014](VFB_00030786)",
2110
- "dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
2111
- "license": "",
2112
- "thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
2113
- },
2114
- {
2115
- "id": "VFB_00030624",
2116
- "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
2117
- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
2118
- "parent": "[medulla](FBbt_00003748)",
2119
- "source": "",
2120
- "source_id": "",
2121
- "template": "[JFRC2](VFB_00017894)",
2122
- "dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
2123
- "license": "",
2124
- "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
2125
- }
2126
- ],
2127
- "count": 4
2128
- }
2129
- ```
2130
-
2131
- ```python
2132
- vfb.get_templates(return_dataframe=False)
2133
- ```
2134
- ```json
2135
- {
2136
- "headers": {
2137
- "id": {
2138
- "title": "Add",
2139
- "type": "selection_id",
2140
- "order": -1
2141
- },
2142
- "order": {
2143
- "title": "Order",
2144
- "type": "numeric",
2145
- "order": 1,
2146
- "sort": {
2147
- "0": "Asc"
2148
- }
2149
- },
2150
- "name": {
2151
- "title": "Name",
2152
- "type": "markdown",
2153
- "order": 1,
2154
- "sort": {
2155
- "1": "Asc"
2156
- }
2157
- },
2158
- "tags": {
2159
- "title": "Tags",
2160
- "type": "tags",
2161
- "order": 2
2162
- },
2163
- "thumbnail": {
2164
- "title": "Thumbnail",
2165
- "type": "markdown",
2166
- "order": 9
2167
- },
2168
- "dataset": {
2169
- "title": "Dataset",
2170
- "type": "metadata",
2171
- "order": 3
2172
- },
2173
- "license": {
2174
- "title": "License",
2175
- "type": "metadata",
2176
- "order": 4
2177
- }
2178
- },
2179
- "rows": [
2180
- {
2181
- "id": "VFB_00200000",
2182
- "order": 2,
2183
- "name": "[JRCVNC2018U](VFB_00200000)",
2184
- "tags": "Nervous_system|Adult|Ganglion",
2185
- "thumbnail": "[![JRCVNC2018U](http://www.virtualflybrain.org/data/VFB/i/0020/0000/VFB_00200000/thumbnail.png 'JRCVNC2018U')](VFB_00200000)",
2186
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
2187
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
2188
- },
2189
- {
2190
- "id": "VFB_00120000",
2191
- "order": 10,
2192
- "name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
2193
- "tags": "Adult|Anatomy",
2194
- "thumbnail": "[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
2195
- "dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
2196
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
2197
- },
2198
- {
2199
- "id": "VFB_00110000",
2200
- "order": 9,
2201
- "name": "[Adult Head (McKellar2020)](VFB_00110000)",
2202
- "tags": "Adult|Anatomy",
2203
- "thumbnail": "[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
2204
- "dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
2205
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2206
- },
2207
- {
2208
- "id": "VFB_00101567",
2209
- "order": 1,
2210
- "name": "[JRC2018U](VFB_00101567)",
2211
- "tags": "Nervous_system|Adult",
2212
- "thumbnail": "[![JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018U')](VFB_00101567)",
2213
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
2214
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
2215
- },
2216
- {
2217
- "id": "VFB_00101384",
2218
- "order": 4,
2219
- "name": "[JRCFIB2018Fum](VFB_00101384)",
2220
- "tags": "Nervous_system|Adult",
2221
- "thumbnail": "[![JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1384/VFB_00101384/thumbnail.png 'JRCFIB2018Fum')](VFB_00101384)",
2222
- "dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
2223
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
2224
- },
2225
- {
2226
- "id": "VFB_00100000",
2227
- "order": 7,
2228
- "name": "[COURT2018VNS](VFB_00100000)",
2229
- "tags": "Nervous_system|Adult|Ganglion",
2230
- "thumbnail": "[![COURT2018VNS](http://www.virtualflybrain.org/data/VFB/i/0010/0000/VFB_00100000/thumbnail.png 'COURT2018VNS')](VFB_00100000)",
2231
- "dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
2232
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2233
- },
2234
- {
2235
- "id": "VFB_00050000",
2236
- "order": 5,
2237
- "name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
2238
- "tags": "Nervous_system|Larva",
2239
- "thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
2240
- "dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016), [Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
2241
- "license": "[CC_BY](VFBlicense_CC_BY_4_0), [CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2242
- },
2243
- {
2244
- "id": "VFB_00049000",
2245
- "order": 6,
2246
- "name": "[L3 CNS template - Wood2018](VFB_00049000)",
2247
- "tags": "Nervous_system|Larva",
2248
- "thumbnail": "[![L3 CNS template - Wood2018](http://www.virtualflybrain.org/data/VFB/i/0004/9000/VFB_00049000/thumbnail.png 'L3 CNS template - Wood2018')](VFB_00049000)",
2249
- "dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
2250
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2251
- },
2252
- {
2253
- "id": "VFB_00030786",
2254
- "order": 8,
2255
- "name": "[adult brain template Ito2014](VFB_00030786)",
2256
- "tags": "Nervous_system|Adult",
2257
- "thumbnail": "[![adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0786/VFB_00030786/thumbnail.png 'adult brain template Ito2014')](VFB_00030786)",
2258
- "dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
2259
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2260
- },
2261
- {
2262
- "id": "VFB_00017894",
2263
- "order": 3,
2264
- "name": "[JFRC2](VFB_00017894)",
2265
- "tags": "Nervous_system|Adult",
2266
- "thumbnail": "[![JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'JFRC2')](VFB_00017894)",
2267
- "dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
2268
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
2269
- }
2270
- ],
2271
- "count": 10
2272
- }
2273
- ```