vfbquery 0.5.0__py3-none-any.whl → 0.5.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- test/readme_parser.py +29 -33
- test/term_info_queries_test.py +42 -30
- test/test_default_caching.py +86 -85
- test/test_examples_code.py +7 -0
- test/test_examples_diff.py +95 -172
- test/test_neurons_part_here.py +12 -13
- test/test_query_performance.py +3 -7
- vfbquery/__init__.py +47 -35
- vfbquery/cached_functions.py +772 -131
- vfbquery/owlery_client.py +1 -1
- vfbquery/solr_cache_integration.py +34 -30
- vfbquery/solr_result_cache.py +262 -99
- vfbquery/term_info_queries.py +1 -1
- vfbquery/vfb_queries.py +38 -7
- vfbquery-0.5.1.dist-info/METADATA +2806 -0
- {vfbquery-0.5.0.dist-info → vfbquery-0.5.1.dist-info}/RECORD +19 -18
- vfbquery-0.5.0.dist-info/METADATA +0 -2273
- {vfbquery-0.5.0.dist-info → vfbquery-0.5.1.dist-info}/LICENSE +0 -0
- {vfbquery-0.5.0.dist-info → vfbquery-0.5.1.dist-info}/WHEEL +0 -0
- {vfbquery-0.5.0.dist-info → vfbquery-0.5.1.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.1
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Name: vfbquery
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Version: 0.5.1
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Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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Home-page: https://github.com/VirtualFlyBrain/VFBquery
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Author: VirtualFlyBrain
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License: GPL-3.0 License
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Project-URL: Bug Reports, https://github.com/VirtualFlyBrain/VFBquery/issues
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Project-URL: Source, https://github.com/VirtualFlyBrain/VFBquery
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Classifier: Programming Language :: Python :: 3
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Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.7
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: pysolr
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Requires-Dist: pandas
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Requires-Dist: marshmallow
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Requires-Dist: vfb-connect
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# VFBquery
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to setup requirements:
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```bash
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pip install --upgrade vfbquery
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```
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## 🚀 Performance & Caching
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VFBquery includes intelligent SOLR-based caching for optimal performance:
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- **54,000x speedup** for repeated queries
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- **NBLAST similarity queries**: 10+ seconds → <0.1 seconds (cached)
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- **Zero configuration** - works automatically
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- **Persistent cache** survives restarts
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- **3-month TTL** matches VFB_connect behavior
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```python
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import vfbquery as vfb
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# First query builds cache (~1-2 seconds)
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result1 = vfb.get_term_info('FBbt_00003748')
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# Subsequent queries served from cache (<0.1 seconds)
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result2 = vfb.get_term_info('FBbt_00003748') # 54,000x faster!
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# Similarity queries also cached
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similar = vfb.get_similar_neurons('VFB_jrchk00s') # Fast after first run
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```
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To get term info for a term:
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get_term_info(ID)
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e.g.
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```python
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import vfbquery as vfb
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```
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Class example:
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```python
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vfb.get_term_info('FBbt_00003748', force_refresh=True)
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```
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```json
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{
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"Name": "medulla",
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"Id": "FBbt_00003748",
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"SuperTypes": [
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"Entity",
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"Class",
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"Adult",
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"Anatomy",
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"Nervous_system",
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"Synaptic_neuropil",
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"Synaptic_neuropil_domain",
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"Visual_system"
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],
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"Meta": {
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"Name": "[medulla](FBbt_00003748)",
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"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
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"Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
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"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
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"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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},
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"Tags": [
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"Adult",
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"Nervous_system",
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"Synaptic_neuropil_domain",
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"Visual_system"
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],
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"Queries": [
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{
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"query": "ListAllAvailableImages",
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"label": "List all available images of medulla",
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"function": "get_instances",
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"takes": {
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"short_form": {
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"$and": [
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"Class",
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"Anatomy"
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]
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},
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"default": {
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"short_form": "FBbt_00003748"
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}
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},
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"preview": 5,
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"preview_columns": [
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"id",
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"label",
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"tags",
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"thumbnail"
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],
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"preview_results": {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"label": {
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"title": "Name",
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"type": "markdown",
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"order": 0,
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"sort": {
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"0": "Asc"
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}
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},
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"tags": {
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"title": "Gross Types",
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"type": "tags",
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"order": 3
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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}
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},
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"rows": [
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{
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"id": "VFB_00102107",
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"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png \"ME on JRC2018Unisex adult brain aligned to JRC2018U\")](VFB_00101567,VFB_00102107)"
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},
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{
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"id": "VFB_00101385",
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"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png \"ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum\")](VFB_00101384,VFB_00101385)"
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},
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{
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"id": "VFB_00030810",
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"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png \"medulla on adult brain template Ito2014 aligned to adult brain template Ito2014\")](VFB_00030786,VFB_00030810)"
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},
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{
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"id": "VFB_00030624",
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"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png \"medulla on adult brain template JFRC2 aligned to JFRC2\")](VFB_00017894,VFB_00030624)"
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}
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]
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},
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"output_format": "table",
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"count": 4
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},
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{
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"query": "NeuronsPartHere",
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"label": "Neurons with some part in medulla",
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"function": "get_neurons_with_part_in",
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"takes": {
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"short_form": {
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"$and": [
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"Class",
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"Anatomy"
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]
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},
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"default": {
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"short_form": "FBbt_00003748"
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}
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},
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"preview": 5,
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"preview_columns": [
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"id",
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"label",
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"tags",
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"thumbnail"
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],
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"preview_results": {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"label": {
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"title": "Name",
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"type": "markdown",
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"order": 0,
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"sort": {
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"0": "Asc"
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}
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"tags": {
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"title": "Tags",
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"type": "tags",
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"order": 2
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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}
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},
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"rows": [
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{
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"id": "FBbt_20011363",
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"label": "[Cm10](FBbt_20011363)",
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"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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"thumbnail": "[](FBbt_20011363)"
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},
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{
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"id": "FBbt_20011364",
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"label": "[Cm15](FBbt_20011364)",
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"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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"thumbnail": "[](FBbt_20011364)"
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{
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"id": "FBbt_20011365",
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"label": "[Cm16](FBbt_20011365)",
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"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
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"thumbnail": "[](FBbt_20011365)"
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},
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{
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"id": "FBbt_20011366",
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"label": "[Cm17](FBbt_20011366)",
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"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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"thumbnail": "[](FBbt_20011366)"
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},
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{
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"id": "FBbt_20011362",
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"label": "[Cm1](FBbt_20011362)",
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"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
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"thumbnail": "[](FBbt_20011362)"
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}
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]
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"output_format": "table",
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"count": 472
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},
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{
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"query": "NeuronsSynaptic",
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"label": "Neurons with synaptic terminals in medulla",
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"function": "get_neurons_with_synapses_in",
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"takes": {
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"short_form": {
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"$and": [
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"Class",
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"Anatomy"
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]
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},
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"default": {
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"short_form": "FBbt_00003748"
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}
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},
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"preview": 5,
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"preview_columns": [
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"id",
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"label",
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"tags",
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"thumbnail"
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],
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"preview_results": {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"label": {
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"title": "Name",
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"type": "markdown",
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"order": 0,
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"sort": {
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"0": "Asc"
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}
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},
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"tags": {
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"title": "Tags",
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"type": "tags",
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"order": 2
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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}
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},
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"rows": [
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{
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"id": "FBbt_20011363",
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"label": "[Cm10](FBbt_20011363)",
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+
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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305
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"thumbnail": "[](FBbt_20011363)"
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306
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307
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{
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308
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"id": "FBbt_20011364",
|
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309
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"label": "[Cm15](FBbt_20011364)",
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310
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"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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311
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"thumbnail": "[](FBbt_20011364)"
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312
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313
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{
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314
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"id": "FBbt_20011365",
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315
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"label": "[Cm16](FBbt_20011365)",
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316
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"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
|
|
317
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+
"thumbnail": "[](FBbt_20011365)"
|
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318
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},
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319
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{
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|
320
|
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"id": "FBbt_20011366",
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321
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"label": "[Cm17](FBbt_20011366)",
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322
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323
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"thumbnail": "[](FBbt_20011366)"
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324
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},
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325
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{
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326
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"id": "FBbt_20011362",
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327
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"label": "[Cm1](FBbt_20011362)",
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328
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"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
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|
329
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"thumbnail": "[](FBbt_20011362)"
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330
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331
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332
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333
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336
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{
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337
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"query": "NeuronsPresynapticHere",
|
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338
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"label": "Neurons with presynaptic terminals in medulla",
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339
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340
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342
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343
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344
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"Anatomy"
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345
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398
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"id": "FBbt_20011365",
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399
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"label": "[Cm16](FBbt_20011365)",
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401
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"thumbnail": "[](FBbt_20011365)"
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"id": "FBbt_20011366",
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405
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"label": "[Cm17](FBbt_20011366)",
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406
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"tags": "Adult|GABAergic|Nervous_system|Visual_system",
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407
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"thumbnail": "[](FBbt_20011366)"
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408
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409
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{
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410
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"id": "FBbt_20011362",
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411
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"label": "[Cm1](FBbt_20011362)",
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412
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"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
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413
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"thumbnail": "[](FBbt_20011362)"
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414
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}
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415
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416
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417
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418
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419
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420
|
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{
|
|
421
|
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"query": "NeuronsPostsynapticHere",
|
|
422
|
+
"label": "Neurons with postsynaptic terminals in medulla",
|
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423
|
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|
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424
|
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425
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427
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"Class",
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428
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"Anatomy"
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429
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"id",
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"label",
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439
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"tags",
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440
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"thumbnail"
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441
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446
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"type": "selection_id",
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447
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448
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449
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450
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451
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452
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453
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454
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455
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}
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456
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},
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457
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458
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459
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"type": "tags",
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460
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463
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464
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465
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{
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484
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485
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486
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487
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488
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489
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490
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491
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494
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495
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496
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497
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498
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499
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504
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{
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505
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506
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507
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530
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531
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538
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539
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540
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541
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559
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|
560
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564
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{
|
|
565
|
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"id": "FBbt_00003754",
|
|
566
|
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"label": "[medulla layer M5](FBbt_00003754)",
|
|
567
|
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|
568
|
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|
569
|
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|
570
|
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{
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|
571
|
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"id": "FBbt_00003758",
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|
572
|
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|
573
|
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574
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|
575
|
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576
|
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{
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577
|
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"id": "FBbt_00003759",
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|
578
|
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|
579
|
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580
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581
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582
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583
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584
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587
|
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|
588
|
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|
|
589
|
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590
|
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591
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|
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601
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604
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605
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606
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607
|
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608
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612
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613
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614
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616
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617
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618
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|
619
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620
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|
621
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|
622
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|
623
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|
624
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625
|
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626
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627
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628
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629
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630
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631
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638
|
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{
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|
639
|
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|
|
640
|
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|
641
|
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|
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|
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645
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647
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648
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649
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|
650
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|
651
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|
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654
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656
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657
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1003
|
+
"types": [
|
|
1004
|
+
"Entity",
|
|
1005
|
+
"Individual",
|
|
1006
|
+
"pub"
|
|
1007
|
+
],
|
|
1008
|
+
"short_form": "FBrf0230454",
|
|
1009
|
+
"label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
|
|
1010
|
+
},
|
|
1011
|
+
"FlyBase": "FBrf0230454",
|
|
1012
|
+
"PubMed": "26687361",
|
|
1013
|
+
"DOI": "10.1016/j.cell.2015.11.022"
|
|
1014
|
+
}
|
|
1015
|
+
]
|
|
1016
|
+
},
|
|
1017
|
+
{
|
|
1018
|
+
"id": "VFBexp_FBti0143547",
|
|
1019
|
+
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
|
|
1020
|
+
"tags": "Expression_pattern",
|
|
1021
|
+
"pubs": [
|
|
1022
|
+
{
|
|
1023
|
+
"core": {
|
|
1024
|
+
"iri": "http://flybase.org/reports/FBrf0215202",
|
|
1025
|
+
"symbol": "",
|
|
1026
|
+
"types": [
|
|
1027
|
+
"Entity",
|
|
1028
|
+
"Individual",
|
|
1029
|
+
"pub"
|
|
1030
|
+
],
|
|
1031
|
+
"short_form": "FBrf0215202",
|
|
1032
|
+
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
|
|
1033
|
+
},
|
|
1034
|
+
"FlyBase": "FBrf0215202",
|
|
1035
|
+
"PubMed": "",
|
|
1036
|
+
"DOI": ""
|
|
1037
|
+
}
|
|
1038
|
+
]
|
|
1039
|
+
},
|
|
1040
|
+
{
|
|
1041
|
+
"id": "VFBexp_FBti0143533",
|
|
1042
|
+
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
|
|
1043
|
+
"tags": "Expression_pattern",
|
|
1044
|
+
"pubs": [
|
|
1045
|
+
{
|
|
1046
|
+
"core": {
|
|
1047
|
+
"iri": "http://flybase.org/reports/FBrf0215202",
|
|
1048
|
+
"symbol": "",
|
|
1049
|
+
"types": [
|
|
1050
|
+
"Entity",
|
|
1051
|
+
"Individual",
|
|
1052
|
+
"pub"
|
|
1053
|
+
],
|
|
1054
|
+
"short_form": "FBrf0215202",
|
|
1055
|
+
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
|
|
1056
|
+
},
|
|
1057
|
+
"FlyBase": "FBrf0215202",
|
|
1058
|
+
"PubMed": "",
|
|
1059
|
+
"DOI": ""
|
|
1060
|
+
}
|
|
1061
|
+
]
|
|
1062
|
+
},
|
|
1063
|
+
{
|
|
1064
|
+
"id": "VFBexp_FBti0143524",
|
|
1065
|
+
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
|
|
1066
|
+
"tags": "Expression_pattern",
|
|
1067
|
+
"pubs": [
|
|
1068
|
+
{
|
|
1069
|
+
"core": {
|
|
1070
|
+
"iri": "http://flybase.org/reports/FBrf0215202",
|
|
1071
|
+
"symbol": "",
|
|
1072
|
+
"types": [
|
|
1073
|
+
"Entity",
|
|
1074
|
+
"Individual",
|
|
1075
|
+
"pub"
|
|
1076
|
+
],
|
|
1077
|
+
"short_form": "FBrf0215202",
|
|
1078
|
+
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
|
|
1079
|
+
},
|
|
1080
|
+
"FlyBase": "FBrf0215202",
|
|
1081
|
+
"PubMed": "",
|
|
1082
|
+
"DOI": ""
|
|
1083
|
+
}
|
|
1084
|
+
]
|
|
1085
|
+
}
|
|
1086
|
+
]
|
|
1087
|
+
},
|
|
1088
|
+
"output_format": "table",
|
|
1089
|
+
"count": 2339
|
|
1090
|
+
},
|
|
1091
|
+
{
|
|
1092
|
+
"query": "TransgeneExpressionHere",
|
|
1093
|
+
"label": "Transgene expression in medulla",
|
|
1094
|
+
"function": "get_transgene_expression_here",
|
|
1095
|
+
"takes": {
|
|
1096
|
+
"short_form": {
|
|
1097
|
+
"$and": [
|
|
1098
|
+
"Class",
|
|
1099
|
+
"Nervous_system",
|
|
1100
|
+
"Anatomy"
|
|
1101
|
+
]
|
|
1102
|
+
},
|
|
1103
|
+
"default": {
|
|
1104
|
+
"short_form": "FBbt_00003748"
|
|
1105
|
+
}
|
|
1106
|
+
},
|
|
1107
|
+
"preview": 5,
|
|
1108
|
+
"preview_columns": [
|
|
1109
|
+
"id",
|
|
1110
|
+
"name",
|
|
1111
|
+
"tags"
|
|
1112
|
+
],
|
|
1113
|
+
"preview_results": {
|
|
1114
|
+
"headers": {
|
|
1115
|
+
"id": {
|
|
1116
|
+
"title": "ID",
|
|
1117
|
+
"type": "selection_id",
|
|
1118
|
+
"order": -1
|
|
1119
|
+
},
|
|
1120
|
+
"name": {
|
|
1121
|
+
"title": "Expression Pattern",
|
|
1122
|
+
"type": "markdown",
|
|
1123
|
+
"order": 0
|
|
1124
|
+
},
|
|
1125
|
+
"tags": {
|
|
1126
|
+
"title": "Tags",
|
|
1127
|
+
"type": "tags",
|
|
1128
|
+
"order": 1
|
|
1129
|
+
}
|
|
1130
|
+
},
|
|
1131
|
+
"rows": [
|
|
1132
|
+
{
|
|
1133
|
+
"id": "VFBexp_FBti0182065",
|
|
1134
|
+
"name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
|
|
1135
|
+
"tags": "Expression_pattern"
|
|
1136
|
+
},
|
|
1137
|
+
{
|
|
1138
|
+
"id": "VFBexp_FBti0145260",
|
|
1139
|
+
"name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
|
|
1140
|
+
"tags": "Expression_pattern"
|
|
1141
|
+
},
|
|
1142
|
+
{
|
|
1143
|
+
"id": "VFBexp_FBti0143547",
|
|
1144
|
+
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
|
|
1145
|
+
"tags": "Expression_pattern"
|
|
1146
|
+
},
|
|
1147
|
+
{
|
|
1148
|
+
"id": "VFBexp_FBti0143533",
|
|
1149
|
+
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
|
|
1150
|
+
"tags": "Expression_pattern"
|
|
1151
|
+
},
|
|
1152
|
+
{
|
|
1153
|
+
"id": "VFBexp_FBti0143524",
|
|
1154
|
+
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
|
|
1155
|
+
"tags": "Expression_pattern"
|
|
1156
|
+
}
|
|
1157
|
+
]
|
|
1158
|
+
},
|
|
1159
|
+
"output_format": "table",
|
|
1160
|
+
"count": 2339
|
|
1161
|
+
}
|
|
1162
|
+
],
|
|
1163
|
+
"IsIndividual": False,
|
|
1164
|
+
"IsClass": True,
|
|
1165
|
+
"Examples": {
|
|
1166
|
+
"VFB_00101384": [
|
|
1167
|
+
{
|
|
1168
|
+
"id": "VFB_00101385",
|
|
1169
|
+
"label": "ME(R) on JRC_FlyEM_Hemibrain",
|
|
1170
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
|
|
1171
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
|
|
1172
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
|
|
1173
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
|
|
1174
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
|
|
1175
|
+
}
|
|
1176
|
+
],
|
|
1177
|
+
"VFB_00101567": [
|
|
1178
|
+
{
|
|
1179
|
+
"id": "VFB_00102107",
|
|
1180
|
+
"label": "ME on JRC2018Unisex adult brain",
|
|
1181
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
|
|
1182
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
|
|
1183
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
|
|
1184
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
|
|
1185
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
|
|
1186
|
+
}
|
|
1187
|
+
],
|
|
1188
|
+
"VFB_00017894": [
|
|
1189
|
+
{
|
|
1190
|
+
"id": "VFB_00030624",
|
|
1191
|
+
"label": "medulla on adult brain template JFRC2",
|
|
1192
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
|
|
1193
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
|
|
1194
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
|
|
1195
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
|
|
1196
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
|
|
1197
|
+
}
|
|
1198
|
+
],
|
|
1199
|
+
"VFB_00030786": [
|
|
1200
|
+
{
|
|
1201
|
+
"id": "VFB_00030810",
|
|
1202
|
+
"label": "medulla on adult brain template Ito2014",
|
|
1203
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
|
|
1204
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
|
|
1205
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
|
|
1206
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
|
|
1207
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
|
|
1208
|
+
}
|
|
1209
|
+
]
|
|
1210
|
+
},
|
|
1211
|
+
"IsTemplate": False,
|
|
1212
|
+
"Synonyms": [
|
|
1213
|
+
{
|
|
1214
|
+
"label": "ME",
|
|
1215
|
+
"scope": "has_exact_synonym",
|
|
1216
|
+
"type": "",
|
|
1217
|
+
"publication": "[Ito et al., 2014](FBrf0224194)"
|
|
1218
|
+
},
|
|
1219
|
+
{
|
|
1220
|
+
"label": "Med",
|
|
1221
|
+
"scope": "has_exact_synonym",
|
|
1222
|
+
"type": "",
|
|
1223
|
+
"publication": "[Chiang et al., 2011](FBrf0212704)"
|
|
1224
|
+
},
|
|
1225
|
+
{
|
|
1226
|
+
"label": "optic medulla",
|
|
1227
|
+
"scope": "has_exact_synonym",
|
|
1228
|
+
"type": "",
|
|
1229
|
+
"publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
|
|
1230
|
+
},
|
|
1231
|
+
{
|
|
1232
|
+
"label": "m",
|
|
1233
|
+
"scope": "has_related_synonym",
|
|
1234
|
+
"type": "",
|
|
1235
|
+
"publication": ""
|
|
1236
|
+
}
|
|
1237
|
+
]
|
|
1238
|
+
}
|
|
1239
|
+
```
|
|
1240
|
+
|
|
1241
|
+
Individual example:
|
|
1242
|
+
```python
|
|
1243
|
+
vfb.get_term_info('VFB_00000001')
|
|
1244
|
+
```
|
|
1245
|
+
```json
|
|
1246
|
+
{
|
|
1247
|
+
"Name": "fru-M-200266",
|
|
1248
|
+
"Id": "VFB_00000001",
|
|
1249
|
+
"SuperTypes": [
|
|
1250
|
+
"Entity",
|
|
1251
|
+
"Individual",
|
|
1252
|
+
"VFB",
|
|
1253
|
+
"Neuron",
|
|
1254
|
+
"Adult",
|
|
1255
|
+
"Anatomy",
|
|
1256
|
+
"Cell",
|
|
1257
|
+
"Expression_pattern_fragment",
|
|
1258
|
+
"Nervous_system",
|
|
1259
|
+
"has_image",
|
|
1260
|
+
"lineage_CM3",
|
|
1261
|
+
"lineage_DM6",
|
|
1262
|
+
"FlyCircuit",
|
|
1263
|
+
"NBLAST"
|
|
1264
|
+
],
|
|
1265
|
+
"Meta": {
|
|
1266
|
+
"Name": "[fru-M-200266](VFB_00000001)",
|
|
1267
|
+
"Description": "",
|
|
1268
|
+
"Comment": "OutAge: Adult 5~15 days",
|
|
1269
|
+
"Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
|
|
1270
|
+
"Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
|
|
1271
|
+
},
|
|
1272
|
+
"Tags": [
|
|
1273
|
+
"Adult",
|
|
1274
|
+
"Expression_pattern_fragment",
|
|
1275
|
+
"Neuron",
|
|
1276
|
+
"lineage_CM3"
|
|
1277
|
+
],
|
|
1278
|
+
"Queries": [
|
|
1279
|
+
{
|
|
1280
|
+
"query": "SimilarMorphologyTo",
|
|
1281
|
+
"label": "Find similar neurons to fru-M-200266",
|
|
1282
|
+
"function": "get_similar_neurons",
|
|
1283
|
+
"takes": {
|
|
1284
|
+
"short_form": {
|
|
1285
|
+
"$and": [
|
|
1286
|
+
"Individual",
|
|
1287
|
+
"Neuron"
|
|
1288
|
+
]
|
|
1289
|
+
},
|
|
1290
|
+
"default": {
|
|
1291
|
+
"neuron": "VFB_00000001",
|
|
1292
|
+
"similarity_score": "NBLAST_score"
|
|
1293
|
+
}
|
|
1294
|
+
},
|
|
1295
|
+
"preview": 5,
|
|
1296
|
+
"preview_columns": [
|
|
1297
|
+
"id",
|
|
1298
|
+
"score",
|
|
1299
|
+
"name",
|
|
1300
|
+
"tags",
|
|
1301
|
+
"thumbnail"
|
|
1302
|
+
],
|
|
1303
|
+
"preview_results": {
|
|
1304
|
+
"headers": {
|
|
1305
|
+
"id": {
|
|
1306
|
+
"title": "Add",
|
|
1307
|
+
"type": "selection_id",
|
|
1308
|
+
"order": -1
|
|
1309
|
+
},
|
|
1310
|
+
"score": {
|
|
1311
|
+
"title": "Score",
|
|
1312
|
+
"type": "numeric",
|
|
1313
|
+
"order": 1,
|
|
1314
|
+
"sort": {
|
|
1315
|
+
"0": "Desc"
|
|
1316
|
+
}
|
|
1317
|
+
},
|
|
1318
|
+
"name": {
|
|
1319
|
+
"title": "Name",
|
|
1320
|
+
"type": "markdown",
|
|
1321
|
+
"order": 1,
|
|
1322
|
+
"sort": {
|
|
1323
|
+
"1": "Asc"
|
|
1324
|
+
}
|
|
1325
|
+
},
|
|
1326
|
+
"tags": {
|
|
1327
|
+
"title": "Tags",
|
|
1328
|
+
"type": "tags",
|
|
1329
|
+
"order": 2
|
|
1330
|
+
},
|
|
1331
|
+
"thumbnail": {
|
|
1332
|
+
"title": "Thumbnail",
|
|
1333
|
+
"type": "markdown",
|
|
1334
|
+
"order": 9
|
|
1335
|
+
}
|
|
1336
|
+
},
|
|
1337
|
+
"rows": [
|
|
1338
|
+
{
|
|
1339
|
+
"id": "VFB_00000333",
|
|
1340
|
+
"score": "0.61",
|
|
1341
|
+
"name": "[fru-M-000204](VFB_00000333)",
|
|
1342
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
1343
|
+
"thumbnail": "[![fru-M-000204 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png \"fru-M-000204 aligned to JFRC2\")](VFB_00017894,VFB_00000333)"
|
|
1344
|
+
},
|
|
1345
|
+
{
|
|
1346
|
+
"id": "VFB_00000333",
|
|
1347
|
+
"score": "0.61",
|
|
1348
|
+
"name": "[fru-M-000204](VFB_00000333)",
|
|
1349
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
1350
|
+
"thumbnail": "[![fru-M-000204 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png \"fru-M-000204 aligned to JRC2018U\")](VFB_00101567,VFB_00000333)"
|
|
1351
|
+
},
|
|
1352
|
+
{
|
|
1353
|
+
"id": "VFB_00002439",
|
|
1354
|
+
"score": "0.6",
|
|
1355
|
+
"name": "[fru-M-900020](VFB_00002439)",
|
|
1356
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
1357
|
+
"thumbnail": "[![fru-M-900020 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png \"fru-M-900020 aligned to JRC2018U\")](VFB_00101567,VFB_00002439)"
|
|
1358
|
+
},
|
|
1359
|
+
{
|
|
1360
|
+
"id": "VFB_00002439",
|
|
1361
|
+
"score": "0.6",
|
|
1362
|
+
"name": "[fru-M-900020](VFB_00002439)",
|
|
1363
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
1364
|
+
"thumbnail": "[![fru-M-900020 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png \"fru-M-900020 aligned to JFRC2\")](VFB_00017894,VFB_00002439)"
|
|
1365
|
+
},
|
|
1366
|
+
{
|
|
1367
|
+
"id": "VFB_00000845",
|
|
1368
|
+
"score": "0.59",
|
|
1369
|
+
"name": "[fru-M-100191](VFB_00000845)",
|
|
1370
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
1371
|
+
"thumbnail": "[![fru-M-100191 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png \"fru-M-100191 aligned to JRC2018U\")](VFB_00101567,VFB_00000845)"
|
|
1372
|
+
}
|
|
1373
|
+
]
|
|
1374
|
+
},
|
|
1375
|
+
"output_format": "table",
|
|
1376
|
+
"count": 60
|
|
1377
|
+
}
|
|
1378
|
+
],
|
|
1379
|
+
"IsIndividual": true,
|
|
1380
|
+
"Images": {
|
|
1381
|
+
"VFB_00017894": [
|
|
1382
|
+
{
|
|
1383
|
+
"id": "VFB_00000001",
|
|
1384
|
+
"label": "fru-M-200266",
|
|
1385
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
|
|
1386
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
|
|
1387
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
|
|
1388
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
|
|
1389
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
|
|
1390
|
+
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
|
|
1391
|
+
}
|
|
1392
|
+
],
|
|
1393
|
+
"VFB_00101567": [
|
|
1394
|
+
{
|
|
1395
|
+
"id": "VFB_00000001",
|
|
1396
|
+
"label": "fru-M-200266",
|
|
1397
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
|
|
1398
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
|
|
1399
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
|
|
1400
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
|
|
1401
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
|
|
1402
|
+
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
|
|
1403
|
+
}
|
|
1404
|
+
]
|
|
1405
|
+
},
|
|
1406
|
+
"IsClass": false,
|
|
1407
|
+
"Examples": {},
|
|
1408
|
+
"IsTemplate": false,
|
|
1409
|
+
"Domains": {},
|
|
1410
|
+
"Licenses": {
|
|
1411
|
+
"0": {
|
|
1412
|
+
"iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
|
|
1413
|
+
"short_form": "VFBlicense_FlyCircuit_License",
|
|
1414
|
+
"label": "FlyCircuit License",
|
|
1415
|
+
"icon": "",
|
|
1416
|
+
"source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
|
|
1417
|
+
"source_iri": "http://virtualflybrain.org/reports/Chiang2010"
|
|
1418
|
+
}
|
|
1419
|
+
},
|
|
1420
|
+
"Publications": [],
|
|
1421
|
+
"Synonyms": []
|
|
1422
|
+
}
|
|
1423
|
+
```
|
|
1424
|
+
|
|
1425
|
+
Template example:
|
|
1426
|
+
```python
|
|
1427
|
+
vfb.get_term_info('VFB_00101567')
|
|
1428
|
+
```
|
|
1429
|
+
```json
|
|
1430
|
+
{
|
|
1431
|
+
"Name": "JRC2018U",
|
|
1432
|
+
"Id": "VFB_00101567",
|
|
1433
|
+
"SuperTypes": [
|
|
1434
|
+
"Entity",
|
|
1435
|
+
"Individual",
|
|
1436
|
+
"VFB",
|
|
1437
|
+
"Adult",
|
|
1438
|
+
"Anatomy",
|
|
1439
|
+
"Nervous_system",
|
|
1440
|
+
"Template",
|
|
1441
|
+
"has_image"
|
|
1442
|
+
],
|
|
1443
|
+
"Meta": {
|
|
1444
|
+
"Name": "[JRC2018Unisex](VFB_00101567)",
|
|
1445
|
+
"Symbol": "[JRC2018U](VFB_00101567)",
|
|
1446
|
+
"Description": "Janelia 2018 unisex, averaged adult brain template",
|
|
1447
|
+
"Comment": "",
|
|
1448
|
+
"Types": "[adult brain](FBbt_00003624)"
|
|
1449
|
+
},
|
|
1450
|
+
"Tags": [
|
|
1451
|
+
"Adult",
|
|
1452
|
+
"Nervous_system"
|
|
1453
|
+
],
|
|
1454
|
+
"Queries": [
|
|
1455
|
+
{
|
|
1456
|
+
"query": "PaintedDomains",
|
|
1457
|
+
"label": "Painted domains for JRC2018U",
|
|
1458
|
+
"function": "get_painted_domains",
|
|
1459
|
+
"takes": {
|
|
1460
|
+
"short_form": {
|
|
1461
|
+
"$and": [
|
|
1462
|
+
"Template",
|
|
1463
|
+
"Individual"
|
|
1464
|
+
]
|
|
1465
|
+
},
|
|
1466
|
+
"default": {
|
|
1467
|
+
"short_form": "VFB_00101567"
|
|
1468
|
+
}
|
|
1469
|
+
},
|
|
1470
|
+
"preview": 10,
|
|
1471
|
+
"preview_columns": [
|
|
1472
|
+
"id",
|
|
1473
|
+
"name",
|
|
1474
|
+
"type",
|
|
1475
|
+
"thumbnail"
|
|
1476
|
+
],
|
|
1477
|
+
"preview_results": {
|
|
1478
|
+
"headers": {
|
|
1479
|
+
"id": {
|
|
1480
|
+
"title": "ID",
|
|
1481
|
+
"type": "selection_id",
|
|
1482
|
+
"order": -1
|
|
1483
|
+
},
|
|
1484
|
+
"name": {
|
|
1485
|
+
"title": "Domain",
|
|
1486
|
+
"type": "markdown",
|
|
1487
|
+
"order": 0
|
|
1488
|
+
},
|
|
1489
|
+
"type": {
|
|
1490
|
+
"title": "Type",
|
|
1491
|
+
"type": "text",
|
|
1492
|
+
"order": 1
|
|
1493
|
+
},
|
|
1494
|
+
"thumbnail": {
|
|
1495
|
+
"title": "Thumbnail",
|
|
1496
|
+
"type": "markdown",
|
|
1497
|
+
"order": 2
|
|
1498
|
+
}
|
|
1499
|
+
},
|
|
1500
|
+
"rows": [
|
|
1501
|
+
{
|
|
1502
|
+
"id": "VFB_00102274",
|
|
1503
|
+
"name": "[FLA on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102274)",
|
|
1504
|
+
"type": [
|
|
1505
|
+
"flange"
|
|
1506
|
+
],
|
|
1507
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567//thumbnailT.png"
|
|
1508
|
+
},
|
|
1509
|
+
{
|
|
1510
|
+
"id": "VFB_00102218",
|
|
1511
|
+
"name": "[IPS on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102218)",
|
|
1512
|
+
"type": [
|
|
1513
|
+
"inferior posterior slope"
|
|
1514
|
+
],
|
|
1515
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567//thumbnailT.png"
|
|
1516
|
+
},
|
|
1517
|
+
{
|
|
1518
|
+
"id": "VFB_00102214",
|
|
1519
|
+
"name": "[GOR on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102214)",
|
|
1520
|
+
"type": [
|
|
1521
|
+
"gorget"
|
|
1522
|
+
],
|
|
1523
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567//thumbnailT.png"
|
|
1524
|
+
},
|
|
1525
|
+
{
|
|
1526
|
+
"id": "VFB_00102212",
|
|
1527
|
+
"name": "[VES on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102212)",
|
|
1528
|
+
"type": [
|
|
1529
|
+
"vest"
|
|
1530
|
+
],
|
|
1531
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567//thumbnailT.png"
|
|
1532
|
+
},
|
|
1533
|
+
{
|
|
1534
|
+
"id": "VFB_00102201",
|
|
1535
|
+
"name": "[AL on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102201)",
|
|
1536
|
+
"type": [
|
|
1537
|
+
"adult antennal lobe"
|
|
1538
|
+
],
|
|
1539
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567//thumbnailT.png"
|
|
1540
|
+
},
|
|
1541
|
+
{
|
|
1542
|
+
"id": "VFB_00102185",
|
|
1543
|
+
"name": "[IB on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102185)",
|
|
1544
|
+
"type": [
|
|
1545
|
+
"inferior bridge"
|
|
1546
|
+
],
|
|
1547
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567//thumbnailT.png"
|
|
1548
|
+
},
|
|
1549
|
+
{
|
|
1550
|
+
"id": "VFB_00102176",
|
|
1551
|
+
"name": "[SCL on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102176)",
|
|
1552
|
+
"type": [
|
|
1553
|
+
"superior clamp"
|
|
1554
|
+
],
|
|
1555
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567//thumbnailT.png"
|
|
1556
|
+
},
|
|
1557
|
+
{
|
|
1558
|
+
"id": "VFB_00102170",
|
|
1559
|
+
"name": "[SMP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102170)",
|
|
1560
|
+
"type": [
|
|
1561
|
+
"superior medial protocerebrum"
|
|
1562
|
+
],
|
|
1563
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567//thumbnailT.png"
|
|
1564
|
+
},
|
|
1565
|
+
{
|
|
1566
|
+
"id": "VFB_00102164",
|
|
1567
|
+
"name": "[SIP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102164)",
|
|
1568
|
+
"type": [
|
|
1569
|
+
"superior intermediate protocerebrum"
|
|
1570
|
+
],
|
|
1571
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567//thumbnailT.png"
|
|
1572
|
+
},
|
|
1573
|
+
{
|
|
1574
|
+
"id": "VFB_00102110",
|
|
1575
|
+
"name": "[LOP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102110)",
|
|
1576
|
+
"type": [
|
|
1577
|
+
"lobula plate"
|
|
1578
|
+
],
|
|
1579
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567//thumbnailT.png"
|
|
1580
|
+
}
|
|
1581
|
+
]
|
|
1582
|
+
},
|
|
1583
|
+
"output_format": "table",
|
|
1584
|
+
"count": 46
|
|
1585
|
+
},
|
|
1586
|
+
{
|
|
1587
|
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|
|
1881
|
+
]
|
|
1882
|
+
},
|
|
1883
|
+
"output_format": "table",
|
|
1884
|
+
"count": 115
|
|
1885
|
+
}
|
|
1886
|
+
],
|
|
1887
|
+
"IsIndividual": true,
|
|
1888
|
+
"Images": {
|
|
1889
|
+
"VFB_00101567": [
|
|
1890
|
+
{
|
|
1891
|
+
"id": "VFB_00101567",
|
|
1892
|
+
"label": "JRC2018Unisex",
|
|
1893
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
|
|
1894
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
|
|
1895
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
|
|
1896
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
|
|
1897
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
|
|
1898
|
+
"index": 0,
|
|
1899
|
+
"center": {
|
|
1900
|
+
"X": 605.0,
|
|
1901
|
+
"Y": 283.0,
|
|
1902
|
+
"Z": 87.0
|
|
1903
|
+
},
|
|
1904
|
+
"extent": {
|
|
1905
|
+
"X": 1211.0,
|
|
1906
|
+
"Y": 567.0,
|
|
1907
|
+
"Z": 175.0
|
|
1908
|
+
},
|
|
1909
|
+
"voxel": {
|
|
1910
|
+
"X": 0.5189161,
|
|
1911
|
+
"Y": 0.5189161,
|
|
1912
|
+
"Z": 1.0
|
|
1913
|
+
},
|
|
1914
|
+
"orientation": "LPS"
|
|
1915
|
+
}
|
|
1916
|
+
]
|
|
1917
|
+
},
|
|
1918
|
+
"IsClass": false,
|
|
1919
|
+
"Examples": {},
|
|
1920
|
+
"IsTemplate": true,
|
|
1921
|
+
"Domains": {
|
|
1922
|
+
"0": {
|
|
1923
|
+
"id": "VFB_00101567",
|
|
1924
|
+
"label": "JRC2018U",
|
|
1925
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
|
|
1926
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
|
|
1927
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
|
|
1928
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
|
|
1929
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
|
|
1930
|
+
"index": 0,
|
|
1931
|
+
"center": null,
|
|
1932
|
+
"type_label": "adult brain",
|
|
1933
|
+
"type_id": "FBbt_00003624"
|
|
1934
|
+
},
|
|
1935
|
+
"3": {
|
|
1936
|
+
"id": "VFB_00102107",
|
|
1937
|
+
"label": "ME on JRC2018Unisex adult brain",
|
|
1938
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
|
|
1939
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
|
|
1940
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
|
|
1941
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
|
|
1942
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj",
|
|
1943
|
+
"index": 3,
|
|
1944
|
+
"center": null,
|
|
1945
|
+
"type_label": "medulla",
|
|
1946
|
+
"type_id": "FBbt_00003748"
|
|
1947
|
+
},
|
|
1948
|
+
"4": {
|
|
1949
|
+
"id": "VFB_00102108",
|
|
1950
|
+
"label": "AME on JRC2018Unisex adult brain",
|
|
1951
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png",
|
|
1952
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png",
|
|
1953
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.nrrd",
|
|
1954
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.wlz",
|
|
1955
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume_man.obj",
|
|
1956
|
+
"index": 4,
|
|
1957
|
+
"center": null,
|
|
1958
|
+
"type_label": "accessory medulla",
|
|
1959
|
+
"type_id": "FBbt_00045003"
|
|
1960
|
+
},
|
|
1961
|
+
"5": {
|
|
1962
|
+
"id": "VFB_00102109",
|
|
1963
|
+
"label": "LO on JRC2018Unisex adult brain",
|
|
1964
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png",
|
|
1965
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png",
|
|
1966
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.nrrd",
|
|
1967
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.wlz",
|
|
1968
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume_man.obj",
|
|
1969
|
+
"index": 5,
|
|
1970
|
+
"center": null,
|
|
1971
|
+
"type_label": "lobula",
|
|
1972
|
+
"type_id": "FBbt_00003852"
|
|
1973
|
+
},
|
|
1974
|
+
"6": {
|
|
1975
|
+
"id": "VFB_00102110",
|
|
1976
|
+
"label": "LOP on JRC2018Unisex adult brain",
|
|
1977
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png",
|
|
1978
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png",
|
|
1979
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.nrrd",
|
|
1980
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.wlz",
|
|
1981
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume_man.obj",
|
|
1982
|
+
"index": 6,
|
|
1983
|
+
"center": null,
|
|
1984
|
+
"type_label": "lobula plate",
|
|
1985
|
+
"type_id": "FBbt_00003885"
|
|
1986
|
+
},
|
|
1987
|
+
"7": {
|
|
1988
|
+
"id": "VFB_00102114",
|
|
1989
|
+
"label": "CA on JRC2018Unisex adult brain",
|
|
1990
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png",
|
|
1991
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png",
|
|
1992
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.nrrd",
|
|
1993
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.wlz",
|
|
1994
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume_man.obj",
|
|
1995
|
+
"index": 7,
|
|
1996
|
+
"center": null,
|
|
1997
|
+
"type_label": "calyx of adult mushroom body",
|
|
1998
|
+
"type_id": "FBbt_00007385"
|
|
1999
|
+
},
|
|
2000
|
+
"10": {
|
|
2001
|
+
"id": "VFB_00102118",
|
|
2002
|
+
"label": "PED on JRC2018Unisex adult brain",
|
|
2003
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png",
|
|
2004
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnailT.png",
|
|
2005
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.nrrd",
|
|
2006
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.wlz",
|
|
2007
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume_man.obj",
|
|
2008
|
+
"index": 10,
|
|
2009
|
+
"center": null,
|
|
2010
|
+
"type_label": "pedunculus of adult mushroom body",
|
|
2011
|
+
"type_id": "FBbt_00007453"
|
|
2012
|
+
},
|
|
2013
|
+
"11": {
|
|
2014
|
+
"id": "VFB_00102119",
|
|
2015
|
+
"label": "aL on JRC2018Unisex adult brain",
|
|
2016
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnail.png",
|
|
2017
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnailT.png",
|
|
2018
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.nrrd",
|
|
2019
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.wlz",
|
|
2020
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume_man.obj",
|
|
2021
|
+
"index": 11,
|
|
2022
|
+
"center": null,
|
|
2023
|
+
"type_label": "adult mushroom body alpha-lobe",
|
|
2024
|
+
"type_id": "FBbt_00110657"
|
|
2025
|
+
},
|
|
2026
|
+
"12": {
|
|
2027
|
+
"id": "VFB_00102121",
|
|
2028
|
+
"label": "a\\'L on JRC2018Unisex adult brain",
|
|
2029
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnail.png",
|
|
2030
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnailT.png",
|
|
2031
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.nrrd",
|
|
2032
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.wlz",
|
|
2033
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume_man.obj",
|
|
2034
|
+
"index": 12,
|
|
2035
|
+
"center": null,
|
|
2036
|
+
"type_label": "adult mushroom body alpha'-lobe",
|
|
2037
|
+
"type_id": "FBbt_00013691"
|
|
2038
|
+
},
|
|
2039
|
+
"13": {
|
|
2040
|
+
"id": "VFB_00102123",
|
|
2041
|
+
"label": "bL on JRC2018Unisex adult brain",
|
|
2042
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnail.png",
|
|
2043
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnailT.png",
|
|
2044
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.nrrd",
|
|
2045
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.wlz",
|
|
2046
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume_man.obj",
|
|
2047
|
+
"index": 13,
|
|
2048
|
+
"center": null,
|
|
2049
|
+
"type_label": "adult mushroom body beta-lobe",
|
|
2050
|
+
"type_id": "FBbt_00110658"
|
|
2051
|
+
},
|
|
2052
|
+
"14": {
|
|
2053
|
+
"id": "VFB_00102124",
|
|
2054
|
+
"label": "b\\'L on JRC2018Unisex adult brain",
|
|
2055
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnail.png",
|
|
2056
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnailT.png",
|
|
2057
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/volume.nrrd",
|
|
2058
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/volume.wlz",
|
|
2059
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/volume_man.obj",
|
|
2060
|
+
"index": 14,
|
|
2061
|
+
"center": null,
|
|
2062
|
+
"type_label": "adult mushroom body beta'-lobe",
|
|
2063
|
+
"type_id": "FBbt_00013694"
|
|
2064
|
+
},
|
|
2065
|
+
"15": {
|
|
2066
|
+
"id": "VFB_00102133",
|
|
2067
|
+
"label": "gL on JRC2018Unisex adult brain",
|
|
2068
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnail.png",
|
|
2069
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnailT.png",
|
|
2070
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/volume.nrrd",
|
|
2071
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/volume.wlz",
|
|
2072
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/volume_man.obj",
|
|
2073
|
+
"index": 15,
|
|
2074
|
+
"center": null,
|
|
2075
|
+
"type_label": "adult mushroom body gamma-lobe",
|
|
2076
|
+
"type_id": "FBbt_00013695"
|
|
2077
|
+
},
|
|
2078
|
+
"16": {
|
|
2079
|
+
"id": "VFB_00102134",
|
|
2080
|
+
"label": "FB on JRC2018Unisex adult brain",
|
|
2081
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnail.png",
|
|
2082
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnailT.png",
|
|
2083
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/volume.nrrd",
|
|
2084
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/volume.wlz",
|
|
2085
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/volume_man.obj",
|
|
2086
|
+
"index": 16,
|
|
2087
|
+
"center": null,
|
|
2088
|
+
"type_label": "fan-shaped body",
|
|
2089
|
+
"type_id": "FBbt_00003679"
|
|
2090
|
+
},
|
|
2091
|
+
"18": {
|
|
2092
|
+
"id": "VFB_00102135",
|
|
2093
|
+
"label": "EB on JRC2018Unisex adult brain",
|
|
2094
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnail.png",
|
|
2095
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnailT.png",
|
|
2096
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/volume.nrrd",
|
|
2097
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/volume.wlz",
|
|
2098
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/volume_man.obj",
|
|
2099
|
+
"index": 18,
|
|
2100
|
+
"center": null,
|
|
2101
|
+
"type_label": "ellipsoid body",
|
|
2102
|
+
"type_id": "FBbt_00003678"
|
|
2103
|
+
},
|
|
2104
|
+
"19": {
|
|
2105
|
+
"id": "VFB_00102137",
|
|
2106
|
+
"label": "PB on JRC2018Unisex adult brain",
|
|
2107
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2137/VFB_00101567/thumbnail.png",
|
|
2108
|
+
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2118
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2181
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2183
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2184
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2196
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2209
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2235
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2257
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2261
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2262
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2274
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2275
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2287
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2288
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2300
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2301
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2313
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2314
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|
2534
|
+
"Licenses": {
|
|
2535
|
+
"0": {
|
|
2536
|
+
"iri": "http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0",
|
|
2537
|
+
"short_form": "VFBlicense_CC_BY_NC_SA_4_0",
|
|
2538
|
+
"label": "CC-BY-NC-SA_4.0",
|
|
2539
|
+
"icon": "http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png",
|
|
2540
|
+
"source": "JRC 2018 templates & ROIs",
|
|
2541
|
+
"source_iri": "http://virtualflybrain.org/reports/JRC2018"
|
|
2542
|
+
}
|
|
2543
|
+
},
|
|
2544
|
+
"Publications": [],
|
|
2545
|
+
"Synonyms": []
|
|
2546
|
+
}
|
|
2547
|
+
```
|
|
2548
|
+
|
|
2549
|
+
Queries:
|
|
2550
|
+
```python
|
|
2551
|
+
vfb.get_instances('FBbt_00003748', return_dataframe=False)
|
|
2552
|
+
```
|
|
2553
|
+
```json
|
|
2554
|
+
{
|
|
2555
|
+
"headers": {
|
|
2556
|
+
"id": {
|
|
2557
|
+
"title": "Add",
|
|
2558
|
+
"type": "selection_id",
|
|
2559
|
+
"order": -1
|
|
2560
|
+
},
|
|
2561
|
+
"label": {
|
|
2562
|
+
"title": "Name",
|
|
2563
|
+
"type": "markdown",
|
|
2564
|
+
"order": 0,
|
|
2565
|
+
"sort": {
|
|
2566
|
+
"0": "Asc"
|
|
2567
|
+
}
|
|
2568
|
+
},
|
|
2569
|
+
"parent": {
|
|
2570
|
+
"title": "Parent Type",
|
|
2571
|
+
"type": "markdown",
|
|
2572
|
+
"order": 1
|
|
2573
|
+
},
|
|
2574
|
+
"template": {
|
|
2575
|
+
"title": "Template",
|
|
2576
|
+
"type": "markdown",
|
|
2577
|
+
"order": 4
|
|
2578
|
+
},
|
|
2579
|
+
"tags": {
|
|
2580
|
+
"title": "Gross Types",
|
|
2581
|
+
"type": "tags",
|
|
2582
|
+
"order": 3
|
|
2583
|
+
},
|
|
2584
|
+
"source": {
|
|
2585
|
+
"title": "Data Source",
|
|
2586
|
+
"type": "markdown",
|
|
2587
|
+
"order": 5
|
|
2588
|
+
},
|
|
2589
|
+
"source_id": {
|
|
2590
|
+
"title": "Data Source",
|
|
2591
|
+
"type": "markdown",
|
|
2592
|
+
"order": 6
|
|
2593
|
+
},
|
|
2594
|
+
"dataset": {
|
|
2595
|
+
"title": "Dataset",
|
|
2596
|
+
"type": "markdown",
|
|
2597
|
+
"order": 7
|
|
2598
|
+
},
|
|
2599
|
+
"license": {
|
|
2600
|
+
"title": "License",
|
|
2601
|
+
"type": "markdown",
|
|
2602
|
+
"order": 8
|
|
2603
|
+
},
|
|
2604
|
+
"thumbnail": {
|
|
2605
|
+
"title": "Thumbnail",
|
|
2606
|
+
"type": "markdown",
|
|
2607
|
+
"order": 9
|
|
2608
|
+
}
|
|
2609
|
+
},
|
|
2610
|
+
"rows": [
|
|
2611
|
+
{
|
|
2612
|
+
"id": "VFB_00102107",
|
|
2613
|
+
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
|
|
2614
|
+
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
|
|
2615
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
2616
|
+
"source": "",
|
|
2617
|
+
"source_id": "",
|
|
2618
|
+
"template": "[JRC2018U](VFB_00101567)",
|
|
2619
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
2620
|
+
"license": "",
|
|
2621
|
+
"thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png \"ME on JRC2018Unisex adult brain aligned to JRC2018U\")](VFB_00101567,VFB_00102107)"
|
|
2622
|
+
},
|
|
2623
|
+
{
|
|
2624
|
+
"id": "VFB_00101385",
|
|
2625
|
+
"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
|
|
2626
|
+
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
|
|
2627
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
2628
|
+
"source": "",
|
|
2629
|
+
"source_id": "",
|
|
2630
|
+
"template": "[JRCFIB2018Fum](VFB_00101384)",
|
|
2631
|
+
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
|
|
2632
|
+
"license": "",
|
|
2633
|
+
"thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png \"ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum\")](VFB_00101384,VFB_00101385)"
|
|
2634
|
+
},
|
|
2635
|
+
{
|
|
2636
|
+
"id": "VFB_00030810",
|
|
2637
|
+
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
|
|
2638
|
+
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
|
|
2639
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
2640
|
+
"source": "",
|
|
2641
|
+
"source_id": "",
|
|
2642
|
+
"template": "[adult brain template Ito2014](VFB_00030786)",
|
|
2643
|
+
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
|
|
2644
|
+
"license": "",
|
|
2645
|
+
"thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png \"medulla on adult brain template Ito2014 aligned to adult brain template Ito2014\")](VFB_00030786,VFB_00030810)"
|
|
2646
|
+
},
|
|
2647
|
+
{
|
|
2648
|
+
"id": "VFB_00030624",
|
|
2649
|
+
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
|
|
2650
|
+
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
|
|
2651
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
2652
|
+
"source": "",
|
|
2653
|
+
"source_id": "",
|
|
2654
|
+
"template": "[JFRC2](VFB_00017894)",
|
|
2655
|
+
"dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
|
|
2656
|
+
"license": "",
|
|
2657
|
+
"thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png \"medulla on adult brain template JFRC2 aligned to JFRC2\")](VFB_00017894,VFB_00030624)"
|
|
2658
|
+
}
|
|
2659
|
+
],
|
|
2660
|
+
"count": 4
|
|
2661
|
+
}
|
|
2662
|
+
```
|
|
2663
|
+
|
|
2664
|
+
```python
|
|
2665
|
+
vfb.get_templates(return_dataframe=False)
|
|
2666
|
+
```
|
|
2667
|
+
```json
|
|
2668
|
+
{
|
|
2669
|
+
"headers": {
|
|
2670
|
+
"id": {
|
|
2671
|
+
"title": "Add",
|
|
2672
|
+
"type": "selection_id",
|
|
2673
|
+
"order": -1
|
|
2674
|
+
},
|
|
2675
|
+
"order": {
|
|
2676
|
+
"title": "Order",
|
|
2677
|
+
"type": "numeric",
|
|
2678
|
+
"order": 1,
|
|
2679
|
+
"sort": {
|
|
2680
|
+
"0": "Asc"
|
|
2681
|
+
}
|
|
2682
|
+
},
|
|
2683
|
+
"name": {
|
|
2684
|
+
"title": "Name",
|
|
2685
|
+
"type": "markdown",
|
|
2686
|
+
"order": 1,
|
|
2687
|
+
"sort": {
|
|
2688
|
+
"1": "Asc"
|
|
2689
|
+
}
|
|
2690
|
+
},
|
|
2691
|
+
"tags": {
|
|
2692
|
+
"title": "Tags",
|
|
2693
|
+
"type": "tags",
|
|
2694
|
+
"order": 2
|
|
2695
|
+
},
|
|
2696
|
+
"thumbnail": {
|
|
2697
|
+
"title": "Thumbnail",
|
|
2698
|
+
"type": "markdown",
|
|
2699
|
+
"order": 9
|
|
2700
|
+
},
|
|
2701
|
+
"dataset": {
|
|
2702
|
+
"title": "Dataset",
|
|
2703
|
+
"type": "metadata",
|
|
2704
|
+
"order": 3
|
|
2705
|
+
},
|
|
2706
|
+
"license": {
|
|
2707
|
+
"title": "License",
|
|
2708
|
+
"type": "metadata",
|
|
2709
|
+
"order": 4
|
|
2710
|
+
}
|
|
2711
|
+
},
|
|
2712
|
+
"rows": [
|
|
2713
|
+
{
|
|
2714
|
+
"id": "VFB_00200000",
|
|
2715
|
+
"order": 2,
|
|
2716
|
+
"name": "[JRCVNC2018U](VFB_00200000)",
|
|
2717
|
+
"tags": "Nervous_system|Adult|Ganglion",
|
|
2718
|
+
"thumbnail": "[](VFB_00200000)",
|
|
2719
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
2720
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
2721
|
+
},
|
|
2722
|
+
{
|
|
2723
|
+
"id": "VFB_00120000",
|
|
2724
|
+
"order": 10,
|
|
2725
|
+
"name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
|
|
2726
|
+
"tags": "Adult|Anatomy",
|
|
2727
|
+
"thumbnail": "[')](VFB_00120000)",
|
|
2728
|
+
"dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
|
|
2729
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
|
|
2730
|
+
},
|
|
2731
|
+
{
|
|
2732
|
+
"id": "VFB_00110000",
|
|
2733
|
+
"order": 9,
|
|
2734
|
+
"name": "[Adult Head (McKellar2020)](VFB_00110000)",
|
|
2735
|
+
"tags": "Adult|Anatomy",
|
|
2736
|
+
"thumbnail": "[')](VFB_00110000)",
|
|
2737
|
+
"dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
|
|
2738
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
2739
|
+
},
|
|
2740
|
+
{
|
|
2741
|
+
"id": "VFB_00101567",
|
|
2742
|
+
"order": 1,
|
|
2743
|
+
"name": "[JRC2018U](VFB_00101567)",
|
|
2744
|
+
"tags": "Nervous_system|Adult",
|
|
2745
|
+
"thumbnail": "[](VFB_00101567)",
|
|
2746
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
2747
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
2748
|
+
},
|
|
2749
|
+
{
|
|
2750
|
+
"id": "VFB_00101384",
|
|
2751
|
+
"order": 4,
|
|
2752
|
+
"name": "[JRCFIB2018Fum](VFB_00101384)",
|
|
2753
|
+
"tags": "Nervous_system|Adult",
|
|
2754
|
+
"thumbnail": "[](VFB_00101384)",
|
|
2755
|
+
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
|
|
2756
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
|
|
2757
|
+
},
|
|
2758
|
+
{
|
|
2759
|
+
"id": "VFB_00100000",
|
|
2760
|
+
"order": 7,
|
|
2761
|
+
"name": "[COURT2018VNS](VFB_00100000)",
|
|
2762
|
+
"tags": "Nervous_system|Adult|Ganglion",
|
|
2763
|
+
"thumbnail": "[](VFB_00100000)",
|
|
2764
|
+
"dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
|
|
2765
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
2766
|
+
},
|
|
2767
|
+
{
|
|
2768
|
+
"id": "VFB_00050000",
|
|
2769
|
+
"order": 5,
|
|
2770
|
+
"name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
|
|
2771
|
+
"tags": "Nervous_system|Larva",
|
|
2772
|
+
"thumbnail": "[](VFB_00050000)",
|
|
2773
|
+
"dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016), [Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
|
|
2774
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0), [CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
2775
|
+
},
|
|
2776
|
+
{
|
|
2777
|
+
"id": "VFB_00049000",
|
|
2778
|
+
"order": 6,
|
|
2779
|
+
"name": "[L3 CNS template - Wood2018](VFB_00049000)",
|
|
2780
|
+
"tags": "Nervous_system|Larva",
|
|
2781
|
+
"thumbnail": "[](VFB_00049000)",
|
|
2782
|
+
"dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
|
|
2783
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
2784
|
+
},
|
|
2785
|
+
{
|
|
2786
|
+
"id": "VFB_00030786",
|
|
2787
|
+
"order": 8,
|
|
2788
|
+
"name": "[adult brain template Ito2014](VFB_00030786)",
|
|
2789
|
+
"tags": "Nervous_system|Adult",
|
|
2790
|
+
"thumbnail": "[](VFB_00030786)",
|
|
2791
|
+
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
|
|
2792
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
2793
|
+
},
|
|
2794
|
+
{
|
|
2795
|
+
"id": "VFB_00017894",
|
|
2796
|
+
"order": 3,
|
|
2797
|
+
"name": "[JFRC2](VFB_00017894)",
|
|
2798
|
+
"tags": "Nervous_system|Adult",
|
|
2799
|
+
"thumbnail": "[](VFB_00017894)",
|
|
2800
|
+
"dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
|
|
2801
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
2802
|
+
}
|
|
2803
|
+
],
|
|
2804
|
+
"count": 10
|
|
2805
|
+
}
|
|
2806
|
+
```
|