vfbquery 0.4.1__py3-none-any.whl → 0.5.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (39) hide show
  1. test/readme_parser.py +29 -27
  2. test/term_info_queries_test.py +46 -34
  3. test/test_dataset_template_queries.py +138 -0
  4. test/test_default_caching.py +89 -84
  5. test/test_examples_code.py +7 -0
  6. test/test_examples_diff.py +95 -172
  7. test/test_expression_overlaps.py +183 -0
  8. test/test_expression_pattern_fragments.py +123 -0
  9. test/test_images_neurons.py +152 -0
  10. test/test_images_that_develop_from.py +112 -0
  11. test/test_lineage_clones_in.py +190 -0
  12. test/test_nblast_queries.py +124 -0
  13. test/test_neuron_classes_fasciculating.py +187 -0
  14. test/test_neuron_inputs.py +193 -0
  15. test/test_neuron_neuron_connectivity.py +89 -0
  16. test/test_neuron_region_connectivity.py +117 -0
  17. test/test_neurons_part_here.py +203 -0
  18. test/test_new_owlery_queries.py +282 -0
  19. test/test_publication_transgene_queries.py +101 -0
  20. test/test_query_performance.py +739 -0
  21. test/test_similar_morphology.py +177 -0
  22. test/test_tracts_nerves_innervating.py +188 -0
  23. test/test_transcriptomics.py +223 -0
  24. vfbquery/__init__.py +47 -35
  25. vfbquery/cached_functions.py +772 -131
  26. vfbquery/neo4j_client.py +120 -0
  27. vfbquery/owlery_client.py +463 -0
  28. vfbquery/solr_cache_integration.py +34 -30
  29. vfbquery/solr_fetcher.py +1 -1
  30. vfbquery/solr_result_cache.py +338 -36
  31. vfbquery/term_info_queries.py +1 -1
  32. vfbquery/vfb_queries.py +2969 -627
  33. vfbquery-0.5.1.dist-info/METADATA +2806 -0
  34. vfbquery-0.5.1.dist-info/RECORD +40 -0
  35. vfbquery-0.4.1.dist-info/METADATA +0 -1315
  36. vfbquery-0.4.1.dist-info/RECORD +0 -19
  37. {vfbquery-0.4.1.dist-info → vfbquery-0.5.1.dist-info}/LICENSE +0 -0
  38. {vfbquery-0.4.1.dist-info → vfbquery-0.5.1.dist-info}/WHEEL +0 -0
  39. {vfbquery-0.4.1.dist-info → vfbquery-0.5.1.dist-info}/top_level.txt +0 -0
@@ -1,1315 +0,0 @@
1
- Metadata-Version: 2.1
2
- Name: vfbquery
3
- Version: 0.4.1
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- Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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- Home-page: https://github.com/VirtualFlyBrain/VFBquery
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- Author: VirtualFlyBrain
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- License: GPL-3.0 License
8
- Project-URL: Bug Reports, https://github.com/VirtualFlyBrain/VFBquery/issues
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- Project-URL: Source, https://github.com/VirtualFlyBrain/VFBquery
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- Classifier: Programming Language :: Python :: 3
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- Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
12
- Classifier: Operating System :: OS Independent
13
- Requires-Python: >=3.7
14
- Description-Content-Type: text/markdown
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- License-File: LICENSE
16
- Requires-Dist: pysolr
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- Requires-Dist: pandas
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- Requires-Dist: marshmallow
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- Requires-Dist: vfb-connect
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-
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- # VFBquery
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-
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- to setup requirements:
24
- ```bash
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- pip install --upgrade vfbquery
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- ```
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-
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- To get term info for a term:
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- get_term_info(ID)
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-
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- e.g.
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- ```python
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- import vfbquery as vfb
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- ```
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- Class example:
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- ```python
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- vfb.get_term_info('FBbt_00003748')
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- ```
39
- ```json
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- {
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- "Name": "medulla",
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- "Id": "FBbt_00003748",
43
- "SuperTypes": [
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- "Entity",
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- "Class",
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- "Adult",
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- "Anatomy",
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- "Nervous_system",
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- "Synaptic_neuropil",
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- "Synaptic_neuropil_domain",
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- "Visual_system"
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- ],
53
- "Meta": {
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- "Name": "[medulla](FBbt_00003748)",
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- "Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
56
- "Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
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- "Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
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- "Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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- },
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- "Tags": [
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- "Adult",
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- "Nervous_system",
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- "Synaptic_neuropil_domain",
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- "Visual_system"
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- ],
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- "Queries": [
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- {
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- "query": "ListAllAvailableImages",
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- "label": "List all available images of medulla",
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- "function": "get_instances",
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- "takes": {
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- "short_form": {
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- "$and": [
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- "Class",
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- "Anatomy"
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- ]
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- },
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- "default": {
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- "short_form": "FBbt_00003748"
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- }
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- },
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- "preview": 5,
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- "preview_columns": [
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- "id",
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- "label",
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- "tags",
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- "thumbnail"
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- ],
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- "preview_results": {
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- "headers": {
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- "id": {
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- "title": "Add",
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- "type": "selection_id",
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- "order": -1
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- },
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- "label": {
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- "title": "Name",
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- "type": "markdown",
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- "order": 0,
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- "sort": {
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- "0": "Asc"
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- }
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- },
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- "tags": {
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- "title": "Gross Types",
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- "type": "tags",
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- "order": 3
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- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "VFB_00102107",
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- "label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018U')](VFB_00101567,VFB_00102107)"
121
- },
122
- {
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- "id": "VFB_00101385",
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- "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
126
- "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
127
- },
128
- {
129
- "id": "VFB_00030810",
130
- "label": "[medulla on adult brain template Ito2014](VFB_00030810)",
131
- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
132
- "thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
133
- },
134
- {
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- "id": "VFB_00030624",
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- "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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- "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
139
- }
140
- ]
141
- },
142
- "output_format": "table",
143
- "count": 4
144
- }
145
- ],
146
- "IsIndividual": False,
147
- "IsClass": True,
148
- "Examples": {
149
- "VFB_00101384": [
150
- {
151
- "id": "VFB_00101385",
152
- "label": "ME(R) on JRC_FlyEM_Hemibrain",
153
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
154
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
155
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
156
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
157
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
158
- }
159
- ],
160
- "VFB_00101567": [
161
- {
162
- "id": "VFB_00102107",
163
- "label": "ME on JRC2018Unisex adult brain",
164
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
165
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
166
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
167
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
168
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
169
- }
170
- ],
171
- "VFB_00017894": [
172
- {
173
- "id": "VFB_00030624",
174
- "label": "medulla on adult brain template JFRC2",
175
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
176
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
177
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
178
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
179
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
180
- }
181
- ],
182
- "VFB_00030786": [
183
- {
184
- "id": "VFB_00030810",
185
- "label": "medulla on adult brain template Ito2014",
186
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
187
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
188
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
189
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
190
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
191
- }
192
- ]
193
- },
194
- "IsTemplate": False,
195
- "Synonyms": [
196
- {
197
- "label": "ME",
198
- "scope": "has_exact_synonym",
199
- "type": "",
200
- "publication": "[Ito et al., 2014](FBrf0224194)"
201
- },
202
- {
203
- "label": "Med",
204
- "scope": "has_exact_synonym",
205
- "type": "",
206
- "publication": "[Chiang et al., 2011](FBrf0212704)"
207
- },
208
- {
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- "label": "optic medulla",
210
- "scope": "has_exact_synonym",
211
- "type": "",
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- "publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
213
- },
214
- {
215
- "label": "m",
216
- "scope": "has_related_synonym",
217
- "type": "",
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- "publication": ""
219
- }
220
- ]
221
- }
222
- ```
223
-
224
- Individual example:
225
- ```python
226
- vfb.get_term_info('VFB_00000001')
227
- ```
228
- ```json
229
- {
230
- "Name": "fru-M-200266",
231
- "Id": "VFB_00000001",
232
- "SuperTypes": [
233
- "Entity",
234
- "Individual",
235
- "VFB",
236
- "Neuron",
237
- "Adult",
238
- "Anatomy",
239
- "Cell",
240
- "Expression_pattern_fragment",
241
- "Nervous_system",
242
- "has_image",
243
- "lineage_CM3",
244
- "lineage_DM6",
245
- "FlyCircuit",
246
- "NBLAST"
247
- ],
248
- "Meta": {
249
- "Name": "[fru-M-200266](VFB_00000001)",
250
- "Description": "",
251
- "Comment": "OutAge: Adult 5~15 days",
252
- "Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
253
- "Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
254
- },
255
- "Tags": [
256
- "Adult",
257
- "Expression_pattern_fragment",
258
- "Neuron",
259
- "lineage_CM3"
260
- ],
261
- "Queries": [
262
- {
263
- "query": "SimilarMorphologyTo",
264
- "label": "Find similar neurons to fru-M-200266",
265
- "function": "get_similar_neurons",
266
- "takes": {
267
- "short_form": {
268
- "$and": [
269
- "Individual",
270
- "Neuron"
271
- ]
272
- },
273
- "default": {
274
- "neuron": "VFB_00000001",
275
- "similarity_score": "NBLAST_score"
276
- }
277
- },
278
- "preview": 5,
279
- "preview_columns": [
280
- "id",
281
- "score",
282
- "name",
283
- "tags",
284
- "thumbnail"
285
- ],
286
- "preview_results": {
287
- "headers": {
288
- "id": {
289
- "title": "Add",
290
- "type": "selection_id",
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- "order": -1
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- },
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- "score": {
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- "title": "Score",
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- "type": "numeric",
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- "order": 1,
297
- "sort": {
298
- "0": "Desc"
299
- }
300
- },
301
- "name": {
302
- "title": "Name",
303
- "type": "markdown",
304
- "order": 1,
305
- "sort": {
306
- "1": "Asc"
307
- }
308
- },
309
- "tags": {
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- "title": "Tags",
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- "type": "tags",
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- "order": 2
313
- },
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- "thumbnail": {
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- "title": "Thumbnail",
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- "type": "markdown",
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- "order": 9
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- }
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- },
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- "rows": [
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- {
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- "id": "VFB_00000333",
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- "score": "0.61",
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- "name": "[fru-M-000204](VFB_00000333)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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- "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
327
- },
328
- {
329
- "id": "VFB_00000333",
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- "score": "0.61",
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- "name": "[fru-M-000204](VFB_00000333)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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- "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
334
- },
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- {
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- "id": "VFB_00002439",
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- "score": "0.6",
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- "name": "[fru-M-900020](VFB_00002439)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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- "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
341
- },
342
- {
343
- "id": "VFB_00002439",
344
- "score": "0.6",
345
- "name": "[fru-M-900020](VFB_00002439)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
347
- "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
348
- },
349
- {
350
- "id": "VFB_00000845",
351
- "score": "0.59",
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- "name": "[fru-M-100191](VFB_00000845)",
353
- "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
354
- "thumbnail": "[![fru-M-100191 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png 'fru-M-100191 aligned to JRC2018U')](VFB_00101567,VFB_00000845)"
355
- }
356
- ]
357
- },
358
- "output_format": "table",
359
- "count": 60
360
- }
361
- ],
362
- "IsIndividual": True,
363
- "Images": {
364
- "VFB_00017894": [
365
- {
366
- "id": "VFB_00000001",
367
- "label": "fru-M-200266",
368
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
369
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
370
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
371
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
372
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
373
- "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
374
- }
375
- ],
376
- "VFB_00101567": [
377
- {
378
- "id": "VFB_00000001",
379
- "label": "fru-M-200266",
380
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
381
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
382
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
383
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
384
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
385
- "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
386
- }
387
- ]
388
- },
389
- "IsClass": False,
390
- "IsTemplate": False,
391
- "Licenses": {
392
- "0": {
393
- "iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
394
- "short_form": "VFBlicense_FlyCircuit_License",
395
- "label": "FlyCircuit License",
396
- "icon": "",
397
- "source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
398
- "source_iri": "http://virtualflybrain.org/reports/Chiang2010"
399
- }
400
- }
401
- }
402
- ```
403
-
404
- Template example:
405
- ```python
406
- vfb.get_term_info('VFB_00101567')
407
- ```
408
- ```json
409
- {
410
- "Name": "JRC2018U",
411
- "Id": "VFB_00101567",
412
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732
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734
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735
- "label": "LH on JRC2018Unisex adult brain",
736
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737
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738
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739
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740
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741
- "index": 28,
742
- "type_label": "adult lateral horn",
743
- "type_id": "FBbt_00007053"
744
- },
745
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746
- "id": "VFB_00102162",
747
- "label": "SLP on JRC2018Unisex adult brain",
748
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749
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750
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751
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752
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2162/VFB_00101567/volume_man.obj",
753
- "index": 29,
754
- "type_label": "superior lateral protocerebrum",
755
- "type_id": "FBbt_00007054"
756
- },
757
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758
- "id": "VFB_00102164",
759
- "label": "SIP on JRC2018Unisex adult brain",
760
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761
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnailT.png",
762
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763
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764
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/volume_man.obj",
765
- "index": 30,
766
- "type_label": "superior intermediate protocerebrum",
767
- "type_id": "FBbt_00045032"
768
- },
769
- "31": {
770
- "id": "VFB_00102170",
771
- "label": "SMP on JRC2018Unisex adult brain",
772
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773
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774
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775
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776
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/volume_man.obj",
777
- "index": 31,
778
- "type_label": "superior medial protocerebrum",
779
- "type_id": "FBbt_00007055"
780
- },
781
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782
- "id": "VFB_00102171",
783
- "label": "CRE on JRC2018Unisex adult brain",
784
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnail.png",
785
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786
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/volume.nrrd",
787
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788
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/volume_man.obj",
789
- "index": 32,
790
- "type_label": "adult crepine",
791
- "type_id": "FBbt_00045037"
792
- },
793
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794
- "id": "VFB_00102174",
795
- "label": "ROB on JRC2018Unisex adult brain",
796
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnail.png",
797
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnailT.png",
798
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799
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/volume.wlz",
800
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/volume_man.obj",
801
- "index": 33,
802
- "type_label": "adult round body",
803
- "type_id": "FBbt_00048509"
804
- },
805
- "34": {
806
- "id": "VFB_00102175",
807
- "label": "RUB on JRC2018Unisex adult brain",
808
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnail.png",
809
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnailT.png",
810
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume.nrrd",
811
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume.wlz",
812
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/volume_man.obj",
813
- "index": 34,
814
- "type_label": "rubus",
815
- "type_id": "FBbt_00040038"
816
- },
817
- "35": {
818
- "id": "VFB_00102176",
819
- "label": "SCL on JRC2018Unisex adult brain",
820
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnail.png",
821
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnailT.png",
822
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume.nrrd",
823
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume.wlz",
824
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/volume_man.obj",
825
- "index": 35,
826
- "type_label": "superior clamp",
827
- "type_id": "FBbt_00040048"
828
- },
829
- "36": {
830
- "id": "VFB_00102179",
831
- "label": "ICL on JRC2018Unisex adult brain",
832
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnail.png",
833
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnailT.png",
834
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume.nrrd",
835
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume.wlz",
836
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/volume_man.obj",
837
- "index": 36,
838
- "type_label": "inferior clamp",
839
- "type_id": "FBbt_00040049"
840
- },
841
- "37": {
842
- "id": "VFB_00102185",
843
- "label": "IB on JRC2018Unisex adult brain",
844
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnail.png",
845
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnailT.png",
846
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/volume.nrrd",
847
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848
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/volume_man.obj",
849
- "index": 37,
850
- "type_label": "inferior bridge",
851
- "type_id": "FBbt_00040050"
852
- },
853
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854
- "id": "VFB_00102190",
855
- "label": "ATL on JRC2018Unisex adult brain",
856
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnail.png",
857
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnailT.png",
858
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859
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860
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/volume_man.obj",
861
- "index": 38,
862
- "type_label": "antler",
863
- "type_id": "FBbt_00045039"
864
- },
865
- "39": {
866
- "id": "VFB_00102201",
867
- "label": "AL on JRC2018Unisex adult brain",
868
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnail.png",
869
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnailT.png",
870
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871
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872
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/volume_man.obj",
873
- "index": 39,
874
- "type_label": "adult antennal lobe",
875
- "type_id": "FBbt_00007401"
876
- },
877
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878
- "id": "VFB_00102212",
879
- "label": "VES on JRC2018Unisex adult brain",
880
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnail.png",
881
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnailT.png",
882
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume.nrrd",
883
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume.wlz",
884
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/volume_man.obj",
885
- "index": 40,
886
- "type_label": "vest",
887
- "type_id": "FBbt_00040041"
888
- },
889
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890
- "id": "VFB_00102213",
891
- "label": "EPA on JRC2018Unisex adult brain",
892
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnail.png",
893
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnailT.png",
894
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume.nrrd",
895
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume.wlz",
896
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume_man.obj",
897
- "index": 41,
898
- "type_label": "epaulette",
899
- "type_id": "FBbt_00040040"
900
- },
901
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902
- "id": "VFB_00102214",
903
- "label": "GOR on JRC2018Unisex adult brain",
904
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnail.png",
905
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnailT.png",
906
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/volume.nrrd",
907
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908
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/volume_man.obj",
909
- "index": 42,
910
- "type_label": "gorget",
911
- "type_id": "FBbt_00040039"
912
- },
913
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914
- "id": "VFB_00102215",
915
- "label": "SPS on JRC2018Unisex adult brain",
916
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnail.png",
917
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnailT.png",
918
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume.nrrd",
919
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume.wlz",
920
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/volume_man.obj",
921
- "index": 43,
922
- "type_label": "superior posterior slope",
923
- "type_id": "FBbt_00045040"
924
- },
925
- "44": {
926
- "id": "VFB_00102218",
927
- "label": "IPS on JRC2018Unisex adult brain",
928
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnail.png",
929
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnailT.png",
930
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume.nrrd",
931
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume.wlz",
932
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/volume_man.obj",
933
- "index": 44,
934
- "type_label": "inferior posterior slope",
935
- "type_id": "FBbt_00045046"
936
- },
937
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938
- "id": "VFB_00102271",
939
- "label": "SAD on JRC2018Unisex adult brain",
940
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnail.png",
941
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnailT.png",
942
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume.nrrd",
943
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume.wlz",
944
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/volume_man.obj",
945
- "index": 45,
946
- "type_label": "saddle",
947
- "type_id": "FBbt_00045048"
948
- },
949
- "46": {
950
- "id": "VFB_00102273",
951
- "label": "AMMC on JRC2018Unisex adult brain",
952
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnail.png",
953
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnailT.png",
954
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume.nrrd",
955
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume.wlz",
956
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume_man.obj",
957
- "index": 46,
958
- "type_label": "antennal mechanosensory and motor center",
959
- "type_id": "FBbt_00003982"
960
- },
961
- "47": {
962
- "id": "VFB_00102274",
963
- "label": "FLA on JRC2018Unisex adult brain",
964
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png",
965
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png",
966
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.nrrd",
967
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.wlz",
968
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume_man.obj",
969
- "index": 47,
970
- "type_label": "flange",
971
- "type_id": "FBbt_00045050"
972
- },
973
- "48": {
974
- "id": "VFB_00102275",
975
- "label": "CAN on JRC2018Unisex adult brain",
976
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png",
977
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png",
978
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.nrrd",
979
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.wlz",
980
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume_man.obj",
981
- "index": 48,
982
- "type_label": "cantle",
983
- "type_id": "FBbt_00045051"
984
- },
985
- "49": {
986
- "id": "VFB_00102276",
987
- "label": "PRW on JRC2018Unisex adult brain",
988
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png",
989
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png",
990
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.nrrd",
991
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.wlz",
992
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume_man.obj",
993
- "index": 49,
994
- "type_label": "prow",
995
- "type_id": "FBbt_00040051"
996
- },
997
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998
- "id": "VFB_00102280",
999
- "label": "GNG on JRC2018Unisex adult brain",
1000
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png",
1001
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png",
1002
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.nrrd",
1003
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.wlz",
1004
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume_man.obj",
1005
- "index": 50,
1006
- "type_label": "adult gnathal ganglion",
1007
- "type_id": "FBbt_00014013"
1008
- },
1009
- "59": {
1010
- "id": "VFB_00102281",
1011
- "label": "GA on JRC2018Unisex adult brain",
1012
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png",
1013
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png",
1014
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.nrrd",
1015
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.wlz",
1016
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume_man.obj",
1017
- "index": 59,
1018
- "type_label": "gall",
1019
- "type_id": "FBbt_00040060"
1020
- },
1021
- "94": {
1022
- "id": "VFB_00102282",
1023
- "label": "NO on JRC2018Unisex adult brain",
1024
- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png",
1025
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png",
1026
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.nrrd",
1027
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.wlz",
1028
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume_man.obj",
1029
- "index": 94,
1030
- "type_label": "nodulus",
1031
- "type_id": "FBbt_00003680"
1032
- }
1033
- },
1034
- "Licenses": {
1035
- "0": {
1036
- "iri": "http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0",
1037
- "short_form": "VFBlicense_CC_BY_NC_SA_4_0",
1038
- "label": "CC-BY-NC-SA_4.0",
1039
- "icon": "http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png",
1040
- "source": "JRC 2018 templates & ROIs",
1041
- "source_iri": "http://virtualflybrain.org/reports/JRC2018"
1042
- }
1043
- },
1044
- "Publications": [],
1045
- "Synonyms": []
1046
- }
1047
- ```
1048
-
1049
- Queries:
1050
- ```python
1051
- vfb.get_instances('FBbt_00003748', return_dataframe=False)
1052
- ```
1053
- ```json
1054
- {
1055
- "headers": {
1056
- "id": {
1057
- "title": "Add",
1058
- "type": "selection_id",
1059
- "order": -1
1060
- },
1061
- "label": {
1062
- "title": "Name",
1063
- "type": "markdown",
1064
- "order": 0,
1065
- "sort": {
1066
- "0": "Asc"
1067
- }
1068
- },
1069
- "parent": {
1070
- "title": "Parent Type",
1071
- "type": "markdown",
1072
- "order": 1
1073
- },
1074
- "template": {
1075
- "title": "Template",
1076
- "type": "markdown",
1077
- "order": 4
1078
- },
1079
- "tags": {
1080
- "title": "Gross Types",
1081
- "type": "tags",
1082
- "order": 3
1083
- },
1084
- "source": {
1085
- "title": "Data Source",
1086
- "type": "markdown",
1087
- "order": 5
1088
- },
1089
- "source_id": {
1090
- "title": "Data Source",
1091
- "type": "markdown",
1092
- "order": 6
1093
- },
1094
- "dataset": {
1095
- "title": "Dataset",
1096
- "type": "markdown",
1097
- "order": 7
1098
- },
1099
- "license": {
1100
- "title": "License",
1101
- "type": "markdown",
1102
- "order": 8
1103
- },
1104
- "thumbnail": {
1105
- "title": "Thumbnail",
1106
- "type": "markdown",
1107
- "order": 9
1108
- }
1109
- },
1110
- "rows": [
1111
- {
1112
- "id": "VFB_00102107",
1113
- "label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
1114
- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
1115
- "parent": "[medulla](FBbt_00003748)",
1116
- "source": "",
1117
- "source_id": "",
1118
- "template": "[JRC2018U](VFB_00101567)",
1119
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
1120
- "license": "",
1121
- "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018U')](VFB_00101567,VFB_00102107)"
1122
- },
1123
- {
1124
- "id": "VFB_00101385",
1125
- "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
1126
- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
1127
- "parent": "[medulla](FBbt_00003748)",
1128
- "source": "",
1129
- "source_id": "",
1130
- "template": "[JRCFIB2018Fum](VFB_00101384)",
1131
- "dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
1132
- "license": "",
1133
- "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
1134
- },
1135
- {
1136
- "id": "VFB_00030810",
1137
- "label": "[medulla on adult brain template Ito2014](VFB_00030810)",
1138
- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
1139
- "parent": "[medulla](FBbt_00003748)",
1140
- "source": "",
1141
- "source_id": "",
1142
- "template": "[adult brain template Ito2014](VFB_00030786)",
1143
- "dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
1144
- "license": "",
1145
- "thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
1146
- },
1147
- {
1148
- "id": "VFB_00030624",
1149
- "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
1150
- "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
1151
- "parent": "[medulla](FBbt_00003748)",
1152
- "source": "",
1153
- "source_id": "",
1154
- "template": "[JFRC2](VFB_00017894)",
1155
- "dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
1156
- "license": "",
1157
- "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
1158
- }
1159
- ],
1160
- "count": 4
1161
- }
1162
- ```
1163
-
1164
- ```python
1165
- vfb.get_templates(return_dataframe=False)
1166
- ```
1167
- ```json
1168
- {
1169
- "headers": {
1170
- "id": {
1171
- "title": "Add",
1172
- "type": "selection_id",
1173
- "order": -1
1174
- },
1175
- "order": {
1176
- "title": "Order",
1177
- "type": "numeric",
1178
- "order": 1,
1179
- "sort": {
1180
- "0": "Asc"
1181
- }
1182
- },
1183
- "name": {
1184
- "title": "Name",
1185
- "type": "markdown",
1186
- "order": 1,
1187
- "sort": {
1188
- "1": "Asc"
1189
- }
1190
- },
1191
- "tags": {
1192
- "title": "Tags",
1193
- "type": "tags",
1194
- "order": 2
1195
- },
1196
- "thumbnail": {
1197
- "title": "Thumbnail",
1198
- "type": "markdown",
1199
- "order": 9
1200
- },
1201
- "dataset": {
1202
- "title": "Dataset",
1203
- "type": "metadata",
1204
- "order": 3
1205
- },
1206
- "license": {
1207
- "title": "License",
1208
- "type": "metadata",
1209
- "order": 4
1210
- }
1211
- },
1212
- "rows": [
1213
- {
1214
- "id": "VFB_00101567",
1215
- "order": 1,
1216
- "name": "[JRC2018U](VFB_00101567)",
1217
- "tags": "Nervous_system|Adult",
1218
- "thumbnail": "[![JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018U')](VFB_00101567)",
1219
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
1220
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1221
- },
1222
- {
1223
- "id": "VFB_00200000",
1224
- "order": 2,
1225
- "name": "[JRCVNC2018U](VFB_00200000)",
1226
- "tags": "Nervous_system|Adult|Ganglion",
1227
- "thumbnail": "[![JRCVNC2018U](http://www.virtualflybrain.org/data/VFB/i/0020/0000/VFB_00200000/thumbnail.png 'JRCVNC2018U')](VFB_00200000)",
1228
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
1229
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1230
- },
1231
- {
1232
- "id": "VFB_00017894",
1233
- "order": 3,
1234
- "name": "[JFRC2](VFB_00017894)",
1235
- "tags": "Nervous_system|Adult",
1236
- "thumbnail": "[![JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'JFRC2')](VFB_00017894)",
1237
- "dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
1238
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1239
- },
1240
- {
1241
- "id": "VFB_00101384",
1242
- "order": 4,
1243
- "name": "[JRCFIB2018Fum](VFB_00101384)",
1244
- "tags": "Nervous_system|Adult",
1245
- "thumbnail": "[![JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1384/VFB_00101384/thumbnail.png 'JRCFIB2018Fum')](VFB_00101384)",
1246
- "dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
1247
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
1248
- },
1249
- {
1250
- "id": "VFB_00050000",
1251
- "order": 5,
1252
- "name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
1253
- "tags": "Nervous_system|Larva",
1254
- "thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1255
- "dataset": "[Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
1256
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1257
- },
1258
- {
1259
- "id": "VFB_00050000",
1260
- "order": 5,
1261
- "name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
1262
- "tags": "Nervous_system|Larva",
1263
- "thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1264
- "dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016)",
1265
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
1266
- },
1267
- {
1268
- "id": "VFB_00049000",
1269
- "order": 6,
1270
- "name": "[L3 CNS template - Wood2018](VFB_00049000)",
1271
- "tags": "Nervous_system|Larva",
1272
- "thumbnail": "[![L3 CNS template - Wood2018](http://www.virtualflybrain.org/data/VFB/i/0004/9000/VFB_00049000/thumbnail.png 'L3 CNS template - Wood2018')](VFB_00049000)",
1273
- "dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
1274
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1275
- },
1276
- {
1277
- "id": "VFB_00100000",
1278
- "order": 7,
1279
- "name": "[COURT2018VNS](VFB_00100000)",
1280
- "tags": "Nervous_system|Adult|Ganglion",
1281
- "thumbnail": "[![COURT2018VNS](http://www.virtualflybrain.org/data/VFB/i/0010/0000/VFB_00100000/thumbnail.png 'COURT2018VNS')](VFB_00100000)",
1282
- "dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
1283
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1284
- },
1285
- {
1286
- "id": "VFB_00030786",
1287
- "order": 8,
1288
- "name": "[adult brain template Ito2014](VFB_00030786)",
1289
- "tags": "Nervous_system|Adult",
1290
- "thumbnail": "[![adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0786/VFB_00030786/thumbnail.png 'adult brain template Ito2014')](VFB_00030786)",
1291
- "dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
1292
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1293
- },
1294
- {
1295
- "id": "VFB_00110000",
1296
- "order": 9,
1297
- "name": "[Adult Head (McKellar2020)](VFB_00110000)",
1298
- "tags": "Adult|Anatomy",
1299
- "thumbnail": "[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
1300
- "dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
1301
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1302
- },
1303
- {
1304
- "id": "VFB_00120000",
1305
- "order": 10,
1306
- "name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
1307
- "tags": "Adult|Anatomy",
1308
- "thumbnail": "[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
1309
- "dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
1310
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
1311
- }
1312
- ],
1313
- "count": 10
1314
- }
1315
- ```