vfbquery 0.2.12__py3-none-any.whl → 0.3.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (15) hide show
  1. test/readme_parser.py +103 -0
  2. test/term_info_queries_test.py +111 -177
  3. test/test_examples_diff.py +317 -0
  4. vfbquery/__init__.py +3 -0
  5. vfbquery/solr_fetcher.py +100 -0
  6. vfbquery/term_info_queries.py +63 -3
  7. vfbquery/test_utils.py +39 -0
  8. vfbquery/vfb_queries.py +350 -76
  9. vfbquery-0.3.3.dist-info/METADATA +1316 -0
  10. vfbquery-0.3.3.dist-info/RECORD +14 -0
  11. {vfbquery-0.2.12.dist-info → vfbquery-0.3.3.dist-info}/WHEEL +1 -1
  12. vfbquery-0.2.12.dist-info/METADATA +0 -1169
  13. vfbquery-0.2.12.dist-info/RECORD +0 -10
  14. {vfbquery-0.2.12.dist-info → vfbquery-0.3.3.dist-info}/LICENSE +0 -0
  15. {vfbquery-0.2.12.dist-info → vfbquery-0.3.3.dist-info}/top_level.txt +0 -0
vfbquery-0.2.12.dist-info/METADATA DELETED
@@ -1,1169 +0,0 @@
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- Metadata-Version: 2.1
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- Name: vfbquery
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- Version: 0.2.12
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- Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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- Home-page: https://github.com/VirtualFlyBrain/VFBquery
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- Author: VirtualFlyBrain
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- License: GPL-3.0 License
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- Project-URL: Bug Reports, https://github.com/VirtualFlyBrain/VFBquery/issues
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- Project-URL: Source, https://github.com/VirtualFlyBrain/VFBquery
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- Classifier: Programming Language :: Python :: 3
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- Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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- Classifier: Operating System :: OS Independent
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- Description-Content-Type: text/markdown
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- License-File: LICENSE
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- Requires-Dist: vfb-connect
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- Requires-Dist: dataclasses-json
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- Requires-Dist: dacite
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- Requires-Dist: requests
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- Requires-Dist: pysolr
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-
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- # VFBquery
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-
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- to setup requirements:
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- ```bash
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- pip install --upgrade vfbquery
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- ```
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-
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- To get term info for a term:
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- get_term_info(ID)
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-
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- e.g.
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- ```python
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- import vfbquery as vfb
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- ```
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- Class example:
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- ```python
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- vfb.get_term_info('FBbt_00003748')
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- ```
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- ```json
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- {
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- 'Name':'medulla',
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- 'Id':'FBbt_00003748',
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- 'SuperTypes':[
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- 'Entity',
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- 'Adult',
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- 'Anatomy',
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- 'Class',
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- 'Nervous_system',
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- 'Synaptic_neuropil',
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- 'Synaptic_neuropil_domain',
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- 'Visual_system'
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- ],
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- 'Meta':{
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- 'Name':'[medulla](FBbt_00003748)',
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- 'Description':'The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).',
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- 'Comment':'',
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- 'Types':'[synaptic neuropil domain](FBbt_00040007)',
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- 'Relationships':'[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)',
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- 'Cross References':'![Insect Brain DB](https://insectbraindb.org/app/assets/images/Megalopta_frontal.png) [Insect Brain DB](https://insectbraindb.org/): [38](https://insectbraindb.org/app/structures/38)'
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- },
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- 'Tags':[
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- 'Adult',
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- 'Nervous_system',
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- 'Synaptic_neuropil_domain',
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- 'Visual_system'
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- ],
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- 'Queries':[
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- {
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- 'query':'ListAllAvailableImages',
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- 'label':'List all available images of medulla',
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- 'function':'get_instances',
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- 'takes':{
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- 'short_form':{
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- '$and':[
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- 'Class',
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- 'Anatomy'
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- ]
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- },
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- 'default':{
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- 'short_form':'FBbt_00003748'
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- }
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- },
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- 'preview':0,
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- 'preview_columns':[
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- 'id',
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- 'label',
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- 'tags',
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- 'thumbnail'
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- ],
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- 'preview_results':{
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- 'headers':{
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- 'id':{
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- 'title':'Add',
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- 'type':'selection_id',
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- 'order':-1
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- },
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- 'label':{
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- 'title':'Name',
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- 'type':'markdown',
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- 'order':0,
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- 'sort':{
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- 0:'Asc'
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- }
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- },
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- 'tags':{
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- 'title':'Gross Types',
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- 'type':'tags',
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- 'order':3
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- },
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- 'thumbnail':{
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- 'title':'Thumbnail',
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- 'type':'markdown',
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- 'order':9
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- }
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- },
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- 'rows':[
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-
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- ]
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- },
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- 'output_format':'table',
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- 'count':4
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- }
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- ],
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- 'IsIndividual':False,
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- 'IsClass':True,
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- 'Examples':{
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- 'VFB_00017894':[
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- {
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- 'id':'VFB_00030624',
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- 'label':'medulla on adult brain template JFRC2',
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- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png',
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- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png',
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- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd',
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- 'wlz':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz',
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- 'obj':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj'
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- }
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- ],
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- 'VFB_00030786':[
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- {
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- 'id':'VFB_00030810',
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- 'label':'medulla on adult brain template Ito2014',
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- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/thumbnail.png',
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- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/thumbnailT.png',
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- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.nrrd',
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- 'wlz':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.wlz',
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- 'obj':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume_man.obj'
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- }
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- ],
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- 'VFB_00101384':[
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- {
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- 'id':'VFB_00101385',
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- 'label':'ME(R) on JRC_FlyEM_Hemibrain',
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- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png',
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- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png',
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- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd',
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- 'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz',
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- 'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj'
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- }
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- ],
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- 'VFB_00101567':[
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- {
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- 'id':'VFB_00102107',
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- 'label':'ME on JRC2018Unisex adult brain',
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- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png',
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- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png',
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- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd',
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- 'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz',
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- 'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj'
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- }
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- ]
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- },
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- 'IsTemplate':False
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- }
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- ```
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- Individual example:
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- ```python
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- vfb.get_term_info('VFB_00000001')
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- ```
179
-
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- ```json
181
- {
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- 'Name':'fru-M-200266',
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- 'Id':'VFB_00000001',
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- 'SuperTypes':[
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- 'Entity',
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- 'Adult',
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- 'Anatomy',
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- 'Cell',
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- 'Expression_pattern_fragment',
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- 'Individual',
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- 'Nervous_system',
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- 'Neuron',
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- 'VFB',
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- 'has_image',
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- 'FlyCircuit',
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- 'NBLAST'
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- ],
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- 'Meta':{
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- 'Name':'[fru-M-200266](VFB_00000001)',
200
- 'Description':'',
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- 'Comment':'OutAge: Adult 5~15 days',
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- 'Types':'[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)',
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- 'Relationships':'[expresses](RO_0002292): [Scer\\GAL4[fru.P1.D]](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4[fru.P1.D] expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)',
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- 'Cross References':'[FlyCircuit 1.0](http://flycircuit.tw): [fru-M-200266](http://flycircuit.tw/modules.php?name=clearpage&op=detail_table&neuron=fru-M-200266)'
205
- },
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- 'Tags':[
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- 'Adult',
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- 'Expression_pattern_fragment',
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- 'Nervous_system',
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- 'Neuron'
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- ],
212
- 'Queries':[
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- {
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- 'query':'SimilarMorphologyTo',
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- 'label':'Find similar neurons to fru-M-200266',
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- 'function':'get_similar_neurons',
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- 'takes':{
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- 'short_form':{
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- '$and':[
220
- 'Individual',
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- 'Neuron'
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- ]
223
- },
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- 'default':{
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- 'neuron':'VFB_00000001',
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- 'similarity_score':'NBLAST_score'
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- }
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- },
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- 'preview':5,
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- 'preview_columns':[
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- 'id',
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- 'score',
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- 'name',
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- 'tags',
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- 'thumbnail'
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- ],
237
- 'preview_results':{
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- 'headers':{
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- 'id':{
240
- 'title':'Add',
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- 'type':'selection_id',
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- 'order':-1
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- },
244
- 'score':{
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- 'title':'Score',
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- 'type':'numeric',
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- 'order':1,
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- 'sort':{
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- 0:'Desc'
250
- }
251
- },
252
- 'name':{
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- 'title':'Name',
254
- 'type':'markdown',
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- 'order':1,
256
- 'sort':{
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- 1:'Asc'
258
- }
259
- },
260
- 'tags':{
261
- 'title':'Tags',
262
- 'type':'tags',
263
- 'order':2
264
- },
265
- 'thumbnail':{
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- 'title':'Thumbnail',
267
- 'type':'markdown',
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- 'order':9
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- }
270
- },
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- 'rows':[
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- {
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- 'id':'VFB_00000333',
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- 'score':0.61,
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- 'name':'[fru-M-000204](VFB_00000333)',
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- 'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
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- 'thumbnail':"[![fru-M-000204 aligned to JRC2018Unisex](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to JRC2018Unisex')](VFB_00101567,VFB_00000333)"
278
- },
279
- {
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- 'id':'VFB_00000333',
281
- 'score':0.61,
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- 'name':'[fru-M-000204](VFB_00000333)',
283
- 'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
284
- 'thumbnail':"[![fru-M-000204 aligned to adult brain template JFRC2](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to adult brain template JFRC2')](VFB_00017894,VFB_00000333)"
285
- },
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- {
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- 'id':'VFB_00002439',
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- 'score':0.6,
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- 'name':'[fru-M-900020](VFB_00002439)',
290
- 'tags':'Expression_pattern_fragment|Nervous_system|Neuron|Adult',
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- 'thumbnail':"[![fru-M-900020 aligned to adult brain template JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to adult brain template JFRC2')](VFB_00017894,VFB_00002439)"
292
- },
293
- {
294
- 'id':'VFB_00002439',
295
- 'score':0.6,
296
- 'name':'[fru-M-900020](VFB_00002439)',
297
- 'tags':'Expression_pattern_fragment|Nervous_system|Neuron|Adult',
298
- 'thumbnail':"[![fru-M-900020 aligned to JRC2018Unisex](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018Unisex')](VFB_00101567,VFB_00002439)"
299
- },
300
- {
301
- 'id':'VFB_00001880',
302
- 'score':0.59,
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- 'name':'[fru-M-100041](VFB_00001880)',
304
- 'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
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- 'thumbnail':"[![fru-M-100041 aligned to JRC2018Unisex](http://www.virtualflybrain.org/data/VFB/i/0000/1880/VFB_00101567/thumbnail.png 'fru-M-100041 aligned to JRC2018Unisex')](VFB_00101567,VFB_00001880)"
306
- }
307
- ]
308
- },
309
- 'output_format':'table',
310
- 'count':60
311
- }
312
- ],
313
- 'IsIndividual':True,
314
- 'Images':{
315
- 'VFB_00017894':[
316
- {
317
- 'id':'VFB_00000001',
318
- 'label':'fru-M-200266',
319
- 'thumbnail':'https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png',
320
- 'thumbnail_transparent':'https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png',
321
- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd',
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- 'wlz':'https://virtualflybrain.org/reports/VFB_00000001/volume.wlz',
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- 'obj':'https://virtualflybrain.org/reports/VFB_00000001/volume.obj',
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- 'swc':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc'
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- }
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- ],
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- 'VFB_00101567':[
328
- {
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- 'id':'VFB_00000001',
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- 'label':'fru-M-200266',
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- 'thumbnail':'https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png',
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- 'thumbnail_transparent':'https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png',
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- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd',
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- 'wlz':'https://virtualflybrain.org/reports/VFB_00000001/volume.wlz',
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- 'obj':'https://virtualflybrain.org/reports/VFB_00000001/volume.obj',
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- 'swc':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc'
337
- }
338
- ]
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- },
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- 'IsClass':False,
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- 'IsTemplate':False,
342
- 'Licenses':{
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- 0:{
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- 'iri':'http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License',
345
- 'short_form':'VFBlicense_FlyCircuit_License',
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- 'label':'FlyCircuit License',
347
- 'icon':'',
348
- 'source':'FlyCircuit 1.0 - single neurons (Chiang2010)',
349
- 'source_iri':'http://virtualflybrain.org/reports/Chiang2010'
350
- }
351
- }
352
- }
353
- ```
354
- Template example:
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- ```python
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- vfb.get_term_info('VFB_00101567')
357
- ```
358
-
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- ```json
360
- {
361
- 'Name':'JRC2018Unisex',
362
- 'Id':'VFB_00101567',
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- 'SuperTypes':[
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- 'Entity',
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- 'Adult',
366
- 'Anatomy',
367
- 'Individual',
368
- 'Nervous_system',
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- 'Template',
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- 'has_image'
371
- ],
372
- 'Meta':{
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- 'Name':'[JRC2018Unisex](VFB_00101567)',
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- 'Description':'Janelia 2018 unisex, averaged adult brain template',
375
- 'Comment':'',
376
- 'Types':'[adult brain](FBbt_00003624)'
377
- },
378
- 'Tags':[
379
- 'Adult',
380
- 'Nervous_system'
381
- ],
382
- 'Queries':[
383
-
384
- ],
385
- 'IsIndividual':True,
386
- 'Images':{
387
- 'VFBc_00101567':[
388
- {
389
- 'id':'VFBc_00101567',
390
- 'label':'JRC2018Unisex_c',
391
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png',
392
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png',
393
- 'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd',
394
- 'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz',
395
- 'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj',
396
- 'index':0,
397
- 'center':{
398
- 'X':605.0,
399
- 'Y':283.0,
400
- 'Z':87.0
401
- },
402
- 'extent':{
403
- 'X':1211.0,
404
- 'Y':567.0,
405
- 'Z':175.0
406
- },
407
- 'voxel':{
408
- 'X':0.5189161,
409
- 'Y':0.5189161,
410
- 'Z':1.0
411
- },
412
- 'orientation':'LPS'
413
- }
414
- ]
415
- },
416
- 'IsClass':False,
417
- 'IsTemplate':True,
418
- 'Domains':{
419
- 0:{
420
- 'id':'VFB_00101567',
421
- 'label':'JRC2018Unisex',
422
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png',
423
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png',
424
- 'index':0,
425
- 'center':None,
426
- 'type_label':'adult brain',
427
- 'type_id':'FBbt_00003624'
428
- },
429
- 3:{
430
- 'id':'VFB_00102107',
431
- 'label':'ME on JRC2018Unisex adult brain',
432
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png',
433
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png',
434
- 'index':3,
435
- 'center':None,
436
- 'type_label':'medulla',
437
- 'type_id':'FBbt_00003748'
438
- },
439
- 4:{
440
- 'id':'VFB_00102108',
441
- 'label':'AME on JRC2018Unisex adult brain',
442
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png',
443
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png',
444
- 'index':4,
445
- 'center':None,
446
- 'type_label':'accessory medulla',
447
- 'type_id':'FBbt_00045003'
448
- },
449
- 5:{
450
- 'id':'VFB_00102109',
451
- 'label':'LO on JRC2018Unisex adult brain',
452
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png',
453
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png',
454
- 'index':5,
455
- 'center':None,
456
- 'type_label':'lobula',
457
- 'type_id':'FBbt_00003852'
458
- },
459
- 6:{
460
- 'id':'VFB_00102110',
461
- 'label':'LOP on JRC2018Unisex adult brain',
462
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png',
463
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png',
464
- 'index':6,
465
- 'center':None,
466
- 'type_label':'lobula plate',
467
- 'type_id':'FBbt_00003885'
468
- },
469
- 7:{
470
- 'id':'VFB_00102114',
471
- 'label':'CA on JRC2018Unisex adult brain',
472
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png',
473
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png',
474
- 'index':7,
475
- 'center':None,
476
- 'type_label':'calyx of adult mushroom body',
477
- 'type_id':'FBbt_00007385'
478
- },
479
- 10:{
480
- 'id':'VFB_00102118',
481
- 'label':'PED on JRC2018Unisex adult brain',
482
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png',
483
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnailT.png',
484
- 'index':10,
485
- 'center':None,
486
- 'type_label':'pedunculus of adult mushroom body',
487
- 'type_id':'FBbt_00007453'
488
- },
489
- 11:{
490
- 'id':'VFB_00102119',
491
- 'label':'aL on JRC2018Unisex adult brain',
492
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnail.png',
493
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnailT.png',
494
- 'index':11,
495
- 'center':None,
496
- 'type_label':'adult mushroom body alpha-lobe',
497
- 'type_id':'FBbt_00110657'
498
- },
499
- 12:{
500
- 'id':'VFB_00102121',
501
- 'label':"a\\'L on JRC2018Unisex adult brain",
502
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnail.png',
503
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnailT.png',
504
- 'index':12,
505
- 'center':None,
506
- 'type_label':"adult mushroom body alpha'-lobe",
507
- 'type_id':'FBbt_00013691'
508
- },
509
- 13:{
510
- 'id':'VFB_00102123',
511
- 'label':'bL on JRC2018Unisex adult brain',
512
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnail.png',
513
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnailT.png',
514
- 'index':13,
515
- 'center':None,
516
- 'type_label':'adult mushroom body beta-lobe',
517
- 'type_id':'FBbt_00110658'
518
- },
519
- 14:{
520
- 'id':'VFB_00102124',
521
- 'label':"b\\'L on JRC2018Unisex adult brain",
522
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnail.png',
523
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnailT.png',
524
- 'index':14,
525
- 'center':None,
526
- 'type_label':"adult mushroom body beta'-lobe",
527
- 'type_id':'FBbt_00013694'
528
- },
529
- 15:{
530
- 'id':'VFB_00102133',
531
- 'label':'gL on JRC2018Unisex adult brain',
532
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnail.png',
533
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnailT.png',
534
- 'index':15,
535
- 'center':None,
536
- 'type_label':'adult mushroom body gamma-lobe',
537
- 'type_id':'FBbt_00013695'
538
- },
539
- 16:{
540
- 'id':'VFB_00102134',
541
- 'label':'FB on JRC2018Unisex adult brain',
542
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnail.png',
543
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnailT.png',
544
- 'index':16,
545
- 'center':None,
546
- 'type_label':'fan-shaped body',
547
- 'type_id':'FBbt_00003679'
548
- },
549
- 18:{
550
- 'id':'VFB_00102135',
551
- 'label':'EB on JRC2018Unisex adult brain',
552
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnail.png',
553
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnailT.png',
554
- 'index':18,
555
- 'center':None,
556
- 'type_label':'ellipsoid body',
557
- 'type_id':'FBbt_00003678'
558
- },
559
- 19:{
560
- 'id':'VFB_00102137',
561
- 'label':'PB on JRC2018Unisex adult brain',
562
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2137/VFB_00101567/thumbnail.png',
563
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2137/VFB_00101567/thumbnailT.png',
564
- 'index':19,
565
- 'center':None,
566
- 'type_label':'protocerebral bridge',
567
- 'type_id':'FBbt_00003668'
568
- },
569
- 21:{
570
- 'id':'VFB_00102139',
571
- 'label':'BU on JRC2018Unisex adult brain',
572
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2139/VFB_00101567/thumbnail.png',
573
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2139/VFB_00101567/thumbnailT.png',
574
- 'index':21,
575
- 'center':None,
576
- 'type_label':'bulb',
577
- 'type_id':'FBbt_00003682'
578
- },
579
- 22:{
580
- 'id':'VFB_00102140',
581
- 'label':'LAL on JRC2018Unisex adult brain',
582
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2140/VFB_00101567/thumbnail.png',
583
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2140/VFB_00101567/thumbnailT.png',
584
- 'index':22,
585
- 'center':None,
586
- 'type_label':'adult lateral accessory lobe',
587
- 'type_id':'FBbt_00003681'
588
- },
589
- 23:{
590
- 'id':'VFB_00102141',
591
- 'label':'AOTU on JRC2018Unisex adult brain',
592
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2141/VFB_00101567/thumbnail.png',
593
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2141/VFB_00101567/thumbnailT.png',
594
- 'index':23,
595
- 'center':None,
596
- 'type_label':'anterior optic tubercle',
597
- 'type_id':'FBbt_00007059'
598
- },
599
- 24:{
600
- 'id':'VFB_00102146',
601
- 'label':'AVLP on JRC2018Unisex adult brain',
602
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2146/VFB_00101567/thumbnail.png',
603
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2146/VFB_00101567/thumbnailT.png',
604
- 'index':24,
605
- 'center':None,
606
- 'type_label':'anterior ventrolateral protocerebrum',
607
- 'type_id':'FBbt_00040043'
608
- },
609
- 25:{
610
- 'id':'VFB_00102148',
611
- 'label':'PVLP on JRC2018Unisex adult brain',
612
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2148/VFB_00101567/thumbnail.png',
613
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2148/VFB_00101567/thumbnailT.png',
614
- 'index':25,
615
- 'center':None,
616
- 'type_label':'posterior ventrolateral protocerebrum',
617
- 'type_id':'FBbt_00040042'
618
- },
619
- 26:{
620
- 'id':'VFB_00102152',
621
- 'label':'PLP on JRC2018Unisex adult brain',
622
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2152/VFB_00101567/thumbnail.png',
623
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2152/VFB_00101567/thumbnailT.png',
624
- 'index':26,
625
- 'center':None,
626
- 'type_label':'posterior lateral protocerebrum',
627
- 'type_id':'FBbt_00040044'
628
- },
629
- 27:{
630
- 'id':'VFB_00102154',
631
- 'label':'WED on JRC2018Unisex adult brain',
632
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2154/VFB_00101567/thumbnail.png',
633
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2154/VFB_00101567/thumbnailT.png',
634
- 'index':27,
635
- 'center':None,
636
- 'type_label':'wedge',
637
- 'type_id':'FBbt_00045027'
638
- },
639
- 28:{
640
- 'id':'VFB_00102159',
641
- 'label':'LH on JRC2018Unisex adult brain',
642
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2159/VFB_00101567/thumbnail.png',
643
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2159/VFB_00101567/thumbnailT.png',
644
- 'index':28,
645
- 'center':None,
646
- 'type_label':'adult lateral horn',
647
- 'type_id':'FBbt_00007053'
648
- },
649
- 29:{
650
- 'id':'VFB_00102162',
651
- 'label':'SLP on JRC2018Unisex adult brain',
652
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2162/VFB_00101567/thumbnail.png',
653
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2162/VFB_00101567/thumbnailT.png',
654
- 'index':29,
655
- 'center':None,
656
- 'type_label':'superior lateral protocerebrum',
657
- 'type_id':'FBbt_00007054'
658
- },
659
- 30:{
660
- 'id':'VFB_00102164',
661
- 'label':'SIP on JRC2018Unisex adult brain',
662
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnail.png',
663
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnailT.png',
664
- 'index':30,
665
- 'center':None,
666
- 'type_label':'superior intermediate protocerebrum',
667
- 'type_id':'FBbt_00045032'
668
- },
669
- 31:{
670
- 'id':'VFB_00102170',
671
- 'label':'SMP on JRC2018Unisex adult brain',
672
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnail.png',
673
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnailT.png',
674
- 'index':31,
675
- 'center':None,
676
- 'type_label':'superior medial protocerebrum',
677
- 'type_id':'FBbt_00007055'
678
- },
679
- 32:{
680
- 'id':'VFB_00102171',
681
- 'label':'CRE on JRC2018Unisex adult brain',
682
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnail.png',
683
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnailT.png',
684
- 'index':32,
685
- 'center':None,
686
- 'type_label':'adult crepine',
687
- 'type_id':'FBbt_00045037'
688
- },
689
- 33:{
690
- 'id':'VFB_00102174',
691
- 'label':'ROB on JRC2018Unisex adult brain',
692
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnail.png',
693
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnailT.png',
694
- 'index':33,
695
- 'center':None,
696
- 'type_label':'adult round body',
697
- 'type_id':'FBbt_00048509'
698
- },
699
- 34:{
700
- 'id':'VFB_00102175',
701
- 'label':'RUB on JRC2018Unisex adult brain',
702
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnail.png',
703
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnailT.png',
704
- 'index':34,
705
- 'center':None,
706
- 'type_label':'rubus',
707
- 'type_id':'FBbt_00040038'
708
- },
709
- 35:{
710
- 'id':'VFB_00102176',
711
- 'label':'SCL on JRC2018Unisex adult brain',
712
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnail.png',
713
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnailT.png',
714
- 'index':35,
715
- 'center':None,
716
- 'type_label':'superior clamp',
717
- 'type_id':'FBbt_00040048'
718
- },
719
- 36:{
720
- 'id':'VFB_00102179',
721
- 'label':'ICL on JRC2018Unisex adult brain',
722
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnail.png',
723
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnailT.png',
724
- 'index':36,
725
- 'center':None,
726
- 'type_label':'inferior clamp',
727
- 'type_id':'FBbt_00040049'
728
- },
729
- 37:{
730
- 'id':'VFB_00102185',
731
- 'label':'IB on JRC2018Unisex adult brain',
732
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnail.png',
733
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnailT.png',
734
- 'index':37,
735
- 'center':None,
736
- 'type_label':'inferior bridge',
737
- 'type_id':'FBbt_00040050'
738
- },
739
- 38:{
740
- 'id':'VFB_00102190',
741
- 'label':'ATL on JRC2018Unisex adult brain',
742
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnail.png',
743
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnailT.png',
744
- 'index':38,
745
- 'center':None,
746
- 'type_label':'antler',
747
- 'type_id':'FBbt_00045039'
748
- },
749
- 39:{
750
- 'id':'VFB_00102201',
751
- 'label':'AL on JRC2018Unisex adult brain',
752
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnail.png',
753
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnailT.png',
754
- 'index':39,
755
- 'center':None,
756
- 'type_label':'adult antennal lobe',
757
- 'type_id':'FBbt_00007401'
758
- },
759
- 40:{
760
- 'id':'VFB_00102212',
761
- 'label':'VES on JRC2018Unisex adult brain',
762
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnail.png',
763
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnailT.png',
764
- 'index':40,
765
- 'center':None,
766
- 'type_label':'vest',
767
- 'type_id':'FBbt_00040041'
768
- },
769
- 41:{
770
- 'id':'VFB_00102213',
771
- 'label':'EPA on JRC2018Unisex adult brain',
772
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnail.png',
773
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnailT.png',
774
- 'index':41,
775
- 'center':None,
776
- 'type_label':'epaulette',
777
- 'type_id':'FBbt_00040040'
778
- },
779
- 42:{
780
- 'id':'VFB_00102214',
781
- 'label':'GOR on JRC2018Unisex adult brain',
782
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnail.png',
783
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnailT.png',
784
- 'index':42,
785
- 'center':None,
786
- 'type_label':'gorget',
787
- 'type_id':'FBbt_00040039'
788
- },
789
- 43:{
790
- 'id':'VFB_00102215',
791
- 'label':'SPS on JRC2018Unisex adult brain',
792
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnail.png',
793
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnailT.png',
794
- 'index':43,
795
- 'center':None,
796
- 'type_label':'superior posterior slope',
797
- 'type_id':'FBbt_00045040'
798
- },
799
- 44:{
800
- 'id':'VFB_00102218',
801
- 'label':'IPS on JRC2018Unisex adult brain',
802
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnail.png',
803
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnailT.png',
804
- 'index':44,
805
- 'center':None,
806
- 'type_label':'inferior posterior slope',
807
- 'type_id':'FBbt_00045046'
808
- },
809
- 45:{
810
- 'id':'VFB_00102271',
811
- 'label':'SAD on JRC2018Unisex adult brain',
812
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnail.png',
813
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnailT.png',
814
- 'index':45,
815
- 'center':None,
816
- 'type_label':'saddle',
817
- 'type_id':'FBbt_00045048'
818
- },
819
- 46:{
820
- 'id':'VFB_00102273',
821
- 'label':'AMMC on JRC2018Unisex adult brain',
822
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnail.png',
823
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnailT.png',
824
- 'index':46,
825
- 'center':None,
826
- 'type_label':'antennal mechanosensory and motor center',
827
- 'type_id':'FBbt_00003982'
828
- },
829
- 47:{
830
- 'id':'VFB_00102274',
831
- 'label':'FLA on JRC2018Unisex adult brain',
832
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png',
833
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png',
834
- 'index':47,
835
- 'center':None,
836
- 'type_label':'flange',
837
- 'type_id':'FBbt_00045050'
838
- },
839
- 48:{
840
- 'id':'VFB_00102275',
841
- 'label':'CAN on JRC2018Unisex adult brain',
842
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png',
843
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png',
844
- 'index':48,
845
- 'center':None,
846
- 'type_label':'cantle',
847
- 'type_id':'FBbt_00045051'
848
- },
849
- 49:{
850
- 'id':'VFB_00102276',
851
- 'label':'PRW on JRC2018Unisex adult brain',
852
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png',
853
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png',
854
- 'index':49,
855
- 'center':None,
856
- 'type_label':'prow',
857
- 'type_id':'FBbt_00040051'
858
- },
859
- 50:{
860
- 'id':'VFB_00102280',
861
- 'label':'GNG on JRC2018Unisex adult brain',
862
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png',
863
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png',
864
- 'index':50,
865
- 'center':None,
866
- 'type_label':'adult gnathal ganglion',
867
- 'type_id':'FBbt_00014013'
868
- },
869
- 59:{
870
- 'id':'VFB_00102281',
871
- 'label':'GA on JRC2018Unisex adult brain',
872
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png',
873
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png',
874
- 'index':59,
875
- 'center':None,
876
- 'type_label':'gall',
877
- 'type_id':'FBbt_00040060'
878
- },
879
- 94:{
880
- 'id':'VFB_00102282',
881
- 'label':'NO on JRC2018Unisex adult brain',
882
- 'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png',
883
- 'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png',
884
- 'index':94,
885
- 'center':None,
886
- 'type_label':'nodulus',
887
- 'type_id':'FBbt_00003680'
888
- }
889
- },
890
- 'Licenses':{
891
- 0:{
892
- 'iri':'http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0',
893
- 'short_form':'VFBlicense_CC_BY_NC_SA_4_0',
894
- 'label':'CC-BY-NC-SA_4.0',
895
- 'icon':'http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png',
896
- 'source':'JRC 2018 templates & ROIs',
897
- 'source_iri':'http://virtualflybrain.org/reports/JRC2018'
898
- }
899
- }
900
- }
901
- ```
902
-
903
- Queries:
904
- ```python
905
- vfb.get_instances('FBbt_00003748', return_dataframe=False)
906
- ```
907
- ```json
908
- {
909
- 'headers':{
910
- 'id':{
911
- 'title':'Add',
912
- 'type':'selection_id',
913
- 'order':-1
914
- },
915
- 'label':{
916
- 'title':'Name',
917
- 'type':'markdown',
918
- 'order':0,
919
- 'sort':{
920
- 0:'Asc'
921
- }
922
- },
923
- 'parent':{
924
- 'title':'Parent Type',
925
- 'type':'markdown',
926
- 'order':1
927
- },
928
- 'template':{
929
- 'title':'Template',
930
- 'type':'markdown',
931
- 'order':4
932
- },
933
- 'tags':{
934
- 'title':'Gross Types',
935
- 'type':'tags',
936
- 'order':3
937
- },
938
- 'source':{
939
- 'title':'Data Source',
940
- 'type':'markdown',
941
- 'order':5
942
- },
943
- 'source_id':{
944
- 'title':'Data Source',
945
- 'type':'markdown',
946
- 'order':6
947
- },
948
- 'dataset':{
949
- 'title':'Dataset',
950
- 'type':'markdown',
951
- 'order':7
952
- },
953
- 'license':{
954
- 'title':'License',
955
- 'type':'markdown',
956
- 'order':8
957
- },
958
- 'thumbnail':{
959
- 'title':'Thumbnail',
960
- 'type':'markdown',
961
- 'order':9
962
- }
963
- },
964
- 'rows':[
965
- {
966
- 'id':'VFB_00102107',
967
- 'label':'[ME on JRC2018Unisex adult brain](VFB_00102107)',
968
- 'tags':'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain',
969
- 'parent':'[medulla](FBbt_00003748)',
970
- 'source':'',
971
- 'source_id':'',
972
- 'template':'[JRC2018Unisex](VFB_00101567)',
973
- 'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
974
- 'license':'',
975
- 'thumbnail':"[![ME on JRC2018Unisex adult brain aligned to JRC2018Unisex](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018Unisex')](VFB_00101567,VFB_00102107)"
976
- },
977
- {
978
- 'id':'VFB_00101385',
979
- 'label':'[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)',
980
- 'tags':'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain',
981
- 'parent':'[medulla](FBbt_00003748)',
982
- 'source':'',
983
- 'source_id':'',
984
- 'template':'[JRC_FlyEM_Hemibrain](VFB_00101384)',
985
- 'dataset':'[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)',
986
- 'license':'',
987
- 'thumbnail':"[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain')](VFB_00101384,VFB_00101385)"
988
- },
989
- {
990
- 'id':'VFB_00030810',
991
- 'label':'[medulla on adult brain template Ito2014](VFB_00030810)',
992
- 'tags':'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain',
993
- 'parent':'[medulla](FBbt_00003748)',
994
- 'source':'',
995
- 'source_id':'',
996
- 'template':'[adult brain template Ito2014](VFB_00030786)',
997
- 'dataset':'[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)',
998
- 'license':'',
999
- 'thumbnail':"[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
1000
- },
1001
- {
1002
- 'id':'VFB_00030624',
1003
- 'label':'[medulla on adult brain template JFRC2](VFB_00030624)',
1004
- 'tags':'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain',
1005
- 'parent':'[medulla](FBbt_00003748)',
1006
- 'source':'',
1007
- 'source_id':'',
1008
- 'template':'[adult brain template JFRC2](VFB_00017894)',
1009
- 'dataset':'[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)',
1010
- 'license':'',
1011
- 'thumbnail':"[![medulla on adult brain template JFRC2 aligned to adult brain template JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to adult brain template JFRC2')](VFB_00017894,VFB_00030624)"
1012
- }
1013
- ],
1014
- 'count':4
1015
- }
1016
- ```
1017
-
1018
- ```python
1019
- vfb.get_templates(return_dataframe=False)
1020
- ```
1021
- ```json
1022
- {
1023
- 'headers':{
1024
- 'id':{
1025
- 'title':'Add',
1026
- 'type':'selection_id',
1027
- 'order':-1
1028
- },
1029
- 'order':{
1030
- 'title':'Order',
1031
- 'type':'numeric',
1032
- 'order':1,
1033
- 'sort':{
1034
- 0:'Asc'
1035
- }
1036
- },
1037
- 'name':{
1038
- 'title':'Name',
1039
- 'type':'markdown',
1040
- 'order':1,
1041
- 'sort':{
1042
- 1:'Asc'
1043
- }
1044
- },
1045
- 'tags':{
1046
- 'title':'Tags',
1047
- 'type':'tags',
1048
- 'order':2
1049
- },
1050
- 'thumbnail':{
1051
- 'title':'Thumbnail',
1052
- 'type':'markdown',
1053
- 'order':9
1054
- },
1055
- 'dataset':{
1056
- 'title':'Dataset',
1057
- 'type':'metadata',
1058
- 'order':3
1059
- },
1060
- 'license':{
1061
- 'title':'License',
1062
- 'type':'metadata',
1063
- 'order':4
1064
- }
1065
- },
1066
- 'rows':[
1067
- {
1068
- 'id':'VFB_00101567',
1069
- 'order':1,
1070
- 'name':'[JRC2018Unisex](VFB_00101567)',
1071
- 'tags':'Nervous_system|Adult',
1072
- 'thumbnail':"[![JRC2018Unisex](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018Unisex')](VFB_00101567)",
1073
- 'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
1074
- 'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
1075
- },
1076
- {
1077
- 'id':'VFB_00200000',
1078
- 'order':2,
1079
- 'name':'[JRC2018UnisexVNC](VFB_00200000)',
1080
- 'tags':'Nervous_system|Adult|Ganglion',
1081
- 'thumbnail':"[![JRC2018UnisexVNC](http://www.virtualflybrain.org/data/VFB/i/0020/0000/VFB_00200000/thumbnail.png 'JRC2018UnisexVNC')](VFB_00200000)",
1082
- 'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
1083
- 'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
1084
- },
1085
- {
1086
- 'id':'VFB_00017894',
1087
- 'order':3,
1088
- 'name':'[adult brain template JFRC2](VFB_00017894)',
1089
- 'tags':'Nervous_system|Adult',
1090
- 'thumbnail':"[![adult brain template JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'adult brain template JFRC2')](VFB_00017894)",
1091
- 'dataset':'[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)',
1092
- 'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
1093
- },
1094
- {
1095
- 'id':'VFB_00101384',
1096
- 'order':4,
1097
- 'name':'[JRC_FlyEM_Hemibrain](VFB_00101384)',
1098
- 'tags':'Nervous_system|Adult',
1099
- 'thumbnail':"[![JRC_FlyEM_Hemibrain](http://www.virtualflybrain.org/data/VFB/i/0010/1384/thumbnail.png 'JRC_FlyEM_Hemibrain')](VFB_00101384)",
1100
- 'dataset':'[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)',
1101
- 'license':'[CC-BY_4.0](VFBlicense_CC_BY_4_0)'
1102
- },
1103
- {
1104
- 'id':'VFB_00050000',
1105
- 'order':5,
1106
- 'name':'[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)',
1107
- 'tags':'Nervous_system|Larva',
1108
- 'thumbnail':"[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1109
- 'dataset':'[larval hugin neurons - EM (Schlegel2016)](Schlegel2016)',
1110
- 'license':'[CC-BY_4.0](VFBlicense_CC_BY_4_0)'
1111
- },
1112
- {
1113
- 'id':'VFB_00050000',
1114
- 'order':5,
1115
- 'name':'[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)',
1116
- 'tags':'Nervous_system|Larva',
1117
- 'thumbnail':"[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1118
- 'dataset':'[Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)',
1119
- 'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
1120
- },
1121
- {
1122
- 'id':'VFB_00049000',
1123
- 'order':6,
1124
- 'name':'[L3 CNS template - Wood2018](VFB_00049000)',
1125
- 'tags':'Nervous_system|Larva',
1126
- 'thumbnail':"[![L3 CNS template - Wood2018](http://www.virtualflybrain.org/data/VFB/i/0004/9000/thumbnail.png 'L3 CNS template - Wood2018')](VFB_00049000)",
1127
- 'dataset':'[L3 Larval CNS Template (Truman2016)](Truman2016)',
1128
- 'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
1129
- },
1130
- {
1131
- 'id':'VFB_00100000',
1132
- 'order':7,
1133
- 'name':'[adult VNS template - Court2018](VFB_00100000)',
1134
- 'tags':'Nervous_system|Adult|Ganglion',
1135
- 'thumbnail':"[![adult VNS template - Court2018](http://www.virtualflybrain.org/data/VFB/i/0010/0000/thumbnail.png 'adult VNS template - Court2018')](VFB_00100000)",
1136
- 'dataset':'[Adult VNS neuropils (Court2017)](Court2017)',
1137
- 'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
1138
- },
1139
- {
1140
- 'id':'VFB_00030786',
1141
- 'order':8,
1142
- 'name':'[adult brain template Ito2014](VFB_00030786)',
1143
- 'tags':'Nervous_system|Adult',
1144
- 'thumbnail':"[![adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0786/thumbnail.png 'adult brain template Ito2014')](VFB_00030786)",
1145
- 'dataset':'[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)',
1146
- 'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
1147
- },
1148
- {
1149
- 'id':'VFB_00110000',
1150
- 'order':9,
1151
- 'name':'[Adult Head (McKellar2020)](VFB_00110000)',
1152
- 'tags':'Adult|Anatomy',
1153
- 'thumbnail':"[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
1154
- 'dataset':'[GAL4 lines from McKellar et al., 2020](McKellar2020)',
1155
- 'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
1156
- },
1157
- {
1158
- 'id':'VFB_00120000',
1159
- 'order':10,
1160
- 'name':'[Adult T1 Leg (Kuan2020)](VFB_00120000)',
1161
- 'tags':'Adult|Anatomy',
1162
- 'thumbnail':"[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
1163
- 'dataset':'[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)',
1164
- 'license':'[CC-BY_4.0](VFBlicense_CC_BY_4_0)'
1165
- }
1166
- ],
1167
- 'count':10
1168
- }
1169
- ```