varsim 1.0.5__py3-none-any.whl → 1.0.6__py3-none-any.whl

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Files changed (7) hide show
  1. varsim/__init__.py +13 -14
  2. {varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/METADATA +1 -1
  3. varsim-1.0.6.dist-info/RECORD +6 -0
  4. varsim-1.0.5.dist-info/RECORD +0 -6
  5. {varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/WHEEL +0 -0
  6. {varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/licenses/LICENSE +0 -0
  7. {varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/top_level.txt +0 -0
varsim/__init__.py CHANGED
@@ -12,6 +12,19 @@ from Bio.Seq import Seq
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  from Bio.SeqFeature import SimpleLocation
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  from Bio.SeqUtils import seq3
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+ __all__ = [
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+ "frameshift_dup",
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+ "frameshift_del",
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+ "cds",
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+ "inframe_dup",
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+ "inframe_del",
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+ "splicing",
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+ "utr5",
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+ "utr3",
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+ "aa_sub",
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+ "missense",
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+ ]
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+
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  Entrez.email = os.environ["EMAIL"]
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  Entrez.api_key = os.environ["API_KEY"]
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  codons = standard_dna_table.forward_table.keys()
@@ -417,17 +430,3 @@ def frameshift_del(gene: str) -> list:
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  for index, base in enumerate(cds, start=1):
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  variants.append((f"{seqrecord.id}:c.{str(index) + base}del",))
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  return variants
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-
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-
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- __all__ = [
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- "frameshift_dup",
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- "frameshift_del",
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- "cds",
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- "inframe_dup",
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- "inframe_del",
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- "splicing",
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- "utr5",
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- "utr3",
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- "aa_sub",
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- "missense",
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- ]
{varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: varsim
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- Version: 1.0.5
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+ Version: 1.0.6
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  Summary: Variant Simulator
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  Author-email: Liu Sun <sunliu@yxnu.edu.cn>, Jian Yang <yangjian@yxnu.edu.cn>
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  Project-URL: Homepage, https://github.com/liu-sun/VarSim
varsim-1.0.6.dist-info/RECORD ADDED
@@ -0,0 +1,6 @@
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+ varsim/__init__.py,sha256=ZIHKGBIp-8_seM6suoUCe2A8OgOL0gR8Oocu-IpCe_k,17712
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+ varsim-1.0.6.dist-info/licenses/LICENSE,sha256=HrhfyXIkWY2tGFK11kg7vPCqhgh5DcxleloqdhrpyMY,11558
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+ varsim-1.0.6.dist-info/METADATA,sha256=p205IC4VbHE2OXj7KexqchrFKTp0Ema67c37s4O3rFs,2464
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+ varsim-1.0.6.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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+ varsim-1.0.6.dist-info/top_level.txt,sha256=2fLprhnBvkF-7VEOzGcpKoodqW08HjyNbVzM6emJrTI,7
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+ varsim-1.0.6.dist-info/RECORD,,
varsim-1.0.5.dist-info/RECORD DELETED
@@ -1,6 +0,0 @@
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- varsim/__init__.py,sha256=r2jXdCqlbLaJsNGXum0B9hBoX0gpGMNQ_aIqt2GyXr8,17714
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- varsim-1.0.5.dist-info/licenses/LICENSE,sha256=HrhfyXIkWY2tGFK11kg7vPCqhgh5DcxleloqdhrpyMY,11558
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- varsim-1.0.5.dist-info/METADATA,sha256=8Uo9_Gn2Pg3Mkct-ZC7oJ9la2ZfddqvduepCUwnorPA,2464
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- varsim-1.0.5.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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- varsim-1.0.5.dist-info/top_level.txt,sha256=2fLprhnBvkF-7VEOzGcpKoodqW08HjyNbVzM6emJrTI,7
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- varsim-1.0.5.dist-info/RECORD,,
{varsim-1.0.5.dist-info → varsim-1.0.6.dist-info}/WHEEL RENAMED
File without changes