vantage6 5.0.0a35__py3-none-any.whl → 5.0.0a36__py3-none-any.whl

vantage6/cli/template/auth_config.j2

@@ -0,0 +1,230 @@
+# for more options on the deployment of this chart, see:
+# https://artifacthub.io/packages/helm/bitnami/keycloak
+keycloak:
+
+  # for development, use a local PostgreSQL instance.
+  {% if keycloak.production %}
+  postgresql:
+    enabled: false
+
+  # TODO v5+ set these variables from the CLI
+  externalDatabase:
+    host: "sql.example.vantage6.ai"
+    port: 5432
+    username: my-username
+    password: my-secret-password
+    database: my-keycloak-database
+    schema: public
+    existingSecretHostKey: my-secret-contains-the-host
+    existingSecretPortKey: my-secret-contains-the-port
+    existingSecretUsernameKey: my-secret-contains-the-username
+    existingSecretPasswordKey: my-secret-contains-the-password
+    existingSecretDatabaseKey: my-secret-contains-the-database
+
+  # TODO v5+ set secrets in CLI
+  auth:
+    # Set the username and password for the Keycloak admin. This user is created when
+    # the service is initialized.
+    adminUser: {{ keycloak.adminUser | default('admin') }}
+    existingSecret: secret-containing-admin-password
+    passwordSecretKey: key-to-admin-password-in-secret
+    # For a development environment, you can set the admin user and password directly.
+    # adminPassword: admin
+
+  # for production, TLS should be enabled for internal Keycloak communication
+  # TODO v5+ we should test if this works when we have CLI commands (#1923)
+  production: true
+  tls:
+    enabled: true
+    autoGenerated: true
+  {% else %}
+  postgresql:
+    enabled: true
+    auth:
+      postgresPassword: postgres
+      password: keycloak
+      database: keycloak
+
+  # for production, use an external PostgreSQL instance. This requires setting up config
+  # as follows. Be sure to set postgres.enabled to false just above here.
+  # externalDatabase:
+  #   host: "sql.example.vantage6.ai"
+  #   port: 5432
+  #   username: my-username
+  #   password: my-secret-password
+  #   database: my-keycloak-database
+  #   schema: public
+  #   # or alternatively, use secrets for all of the above formatted as:
+  #   existingSecretHostKey: my-secret-contains-the-host
+  #   existingSecretPortKey: my-secret-contains-the-port
+  #   existingSecretUsernameKey: my-secret-contains-the-username
+  #   existingSecretPasswordKey: my-secret-contains-the-password
+  #   existingSecretDatabaseKey: my-secret-contains-the-database
+
+  auth:
+    # for development environment, set a dummy password for the admin user.
+    adminUser: admin
+    adminPassword: admin
+    # for production, the password should be stored in a secret. Below you should then
+    # give the name of the secret and the key to where the password is within the
+    # secret.
+    # existingSecret: secret-containing-admin-password
+    # passwordSecretKey: key-to-admin-password-in-secret
+
+  # if you want to switch to production, you should set the following settings to true.
+  production: false
+  tls:
+    enabled: false
+    autoGenerated: false
+  {% endif %}
+
+  # ensure that the auth pod has enough resources to run. The default values are enough
+  # in most cases, but for a larger environment, you might need to increase the limits.
+  resources:
+    limits:
+      memory: 2Gi
+      cpu: 1000m
+    requests:
+      memory: 1Gi
+      cpu: 500m
+
+  # The following configuration is run via the CLI when the Keycloak service is
+  # initialized. It creates a number of users, roles and secrets that are required for
+  # vantage6 to work properly.
+  keycloakConfigCli:
+    enabled: true
+    configuration:
+      # Keycloak realm configuration. For all options, see
+      # https://www.keycloak.org/docs-api/latest/rest-api/index.html#RealmRepresentation
+      realm:
+        # Keycloak realm name
+        realm: {{ keycloak.realm | default('vantage6') }}
+        enabled: true
+
+        # access token lifespan in seconds
+        accessTokenLifespan: {{ keycloak.accessTokenLifespan | default(300) }}
+
+        # sso session idle timeout in seconds. This is the time before the refresh token
+        # expires. With default settings, this value controls the time before the
+        # refresh token expires. Note that if setting this to >3600, you also need to
+        # set ssoSessionMaxLifespan and/or clientSessionIdleTimeout and/or
+        # clientSessionMaxLifespan to higher values to effectively lengthen the session.
+        ssoSessionIdleTimeout: {{ keycloak.ssoSessionIdleTimeout | default(1800) }}
+
+        # password policy configuration. If you prefer not to have a
+        passwordPolicy: "length(8) and upperCase(1) and lowerCase(1) and digits(1) and specialChars(1)"
+
+        # do not allow users to edit their username - this would lead to problems with
+        # syncing the user between keycloak and vantage6 server/store. This setting
+        # should always be set to false.
+        editUsernameAllowed: false
+
+        {% if keycloak.production %}
+        # required actions for users. By setting defaultAction to true for configuring
+        # OTP, the user will be prompted to configure OTP (for two-factor
+        # authentication) on first login.
+        requiredActions:
+          - alias: CONFIGURE_TOTP
+            name: Configure OTP
+            providerId: CONFIGURE_TOTP
+            enabled: true
+            defaultAction: true
+            priority: 10
+        {% else %}
+        # If you want to require users to use two-factor authentication on first login,
+        # enable the settings below.
+        # requiredActions:
+        #  - alias: CONFIGURE_TOTP
+        #    name: Configure OTP
+        #    providerId: CONFIGURE_TOTP
+        #    enabled: true
+        #    defaultAction: true
+        #    priority: 10
+        {% endif %}
+
+        # users to be created in the realm. This initializes the realm with a default
+        # admin user. It also initializes the service account for the backend admin
+        # client to give it the necessary permissions to manage the realm.
+        # TODO v5+ configure secrets where necessary
+        users:
+          # create the vantage6 admin user. The name of this user should also be present
+          # in the vantage6 server and store configuration - it is the user that will be
+          # assigned admin permissions on initial startup.
+          - username: {{ keycloak.adminUser | default('admin') }}
+            enabled: true
+            credentials:
+              - type: password
+                value: {{ keycloak.adminPassword | default('Admin123!') }}
+            requiredActions:
+              {% if keycloak.production %}
+              - CONFIGURE_TOTP
+              - UPDATE_PASSWORD
+              {% else %}
+              # enable configure OTP only if you want to use two-factor authentication
+              # - CONFIGURE_TOTP
+              - UPDATE_PASSWORD
+              {% endif %}
+          # create a service account user for the backend admin client. The
+          # serviceAccountClientId should match the value set in the client section
+          # below. The vantage6 server and store will use this user to create new
+          # accounts for users and nodes in keycloak - that is why it gets assigned some
+          # realm-management permissions.
+          - username: service-account-backend-admin-client
+            enabled: true
+            serviceAccountClientId: backend-admin-client
+            clientRoles:
+              realm-management:
+                - view-users
+                - manage-users
+                - view-clients
+                - manage-clients
+                - create-client
+
+        # clients to be created in the realm. This initializes the realm with a default
+        # public client and a backend admin client. The public client is used by users
+        # to authenticate in the browser. Either the UI or the Python client will
+        # redirect to this client.
+        clients:
+          - clientId: public_client
+            publicClient: true
+            # redirect URIs are the URIs that keycloak is allowed to redirect to after
+            # authentication. This should be set to the UI URL, and to the Keyloak
+            # service on port 7681. The latter is needed for authentication from outside
+            # the browser - if e.g. the Python client authenticates, it will open a
+            # browser window to authenticate that redirects to the Keycloak service on
+            # port 7681.
+            {% if keycloak.redirectUris %}
+            redirectUris:
+              {% for uri in keycloak.redirectUris %}
+              - "{{ uri }}/*"
+              {% endfor %}
+            {% else %}
+            redirectUris:
+              # allow logging in via a local UI
+              - "http://localhost:7600/*"
+              # allow logging in via the Python client (which spins up a local server
+              # on port 7681)
+              - "http://localhost:7681/*"
+            {% endif %}
+            # By setting webOrigins to "+", we allow the same origins as redirectUris.
+            webOrigins:
+              - "+"
+            # The public client is only for users, not for nodes. Therefore, map a
+            # constant claim to indicate the that the client is a user.
+            protocolMappers:
+              - name: vantage6_client_type
+                protocol: openid-connect
+                protocolMapper: oidc-hardcoded-claim-mapper
+                consentRequired: false
+                config:
+                  claim.name: vantage6_client_type
+                  claim.value: user
+                  access.token.claim: true
+          # create a client that will allow the backend to manage users and clients in
+          # keycloak.
+          - clientId: backend-admin-client
+            publicClient: false
+            # TODO v5+ configure secrets where necessary
+            secret: myadminclientsecret
+            serviceAccountsEnabled: true
+            standardFlowEnabled: false

vantage6/cli/template/node_config.j2

@@ -109,25 +109,25 @@ node:
   # Storage settings on host of the node machine. This defines where the database is
   # stored as well as the task directory (which will contain the input/output of the
   # tasks).
-  {% if node.persistence is defined %}
   persistence:
     tasks:
+      {% if node.persistence is defined and node.persistence.tasks is defined %}
       storageClass: {{ node.persistence.tasks.storageClass | default('local-storage') }}
       size: {{ node.persistence.tasks.size | default('10Gi') }}
       hostPath: {{ node.persistence.tasks.hostPath | default('/path/to/where/task/files/are/stored') }}
-    database:
-      storageClass: {{ node.persistence.database.storageClass | default('local-storage') }}
-      size: {{ node.persistence.database.size | default('5Gi') }}
-  {% else %}
-  persistence:
-    tasks:
+      {% else %}
       storageClass: local-storage
       size: 10Gi
       hostPath: /path/to/where/task/files/are/stored
+      {% endif %}
     database:
+      {% if node.persistence is defined and node.persistence.database is defined %}
+      storageClass: {{ node.persistence.database.storageClass | default('local-storage') }}
+      size: {{ node.persistence.database.size | default('5Gi') }}
+      {% else %}
       storageClass: local-storage
       size: 5Gi
-  {% endif %}
+      {% endif %}
 
 
   # It is also possible not to specify the details of the service-based databases

vantage6/cli/template/node_config_nonk8s.j2

@@ -0,0 +1,33 @@
+api_path: {{ api_path }}
+encryption:
+  enabled: false
+  private_key: null
+logging:
+  backup_count: 5
+  datefmt: '%Y-%m-%d %H:%M:%S'
+  file: {{ logging["file"] }}
+  format: '%(asctime)s - %(name)-14s - %(levelname)-8s - %(message)s'
+  level: DEBUG
+  max_size: 1024
+  use_console: true
+  loggers:
+  - level: warning
+    name: urllib3
+  - level: warning
+    name: requests
+  - level: warning
+    name: engineio.client
+  - level: warning
+    name: docker.utils.config
+  - level: warning
+    name: docker.auth
+  - level: warning
+    name: kubernetes.client.rest
+node_proxy_port: {{ node_proxy_port }}
+port: {{ port }}
+server_url: {{ server_url }}
+task_dir: {{ task_dir}}
+dev:
+  task_dir_extension: {{ task_dir_extension }}
+task_namespace: {{ task_namespace }}
+{{- user_provided_config -}}

vantage6/cli/test/common/diagnostic_runner.py

@@ -1,11 +1,13 @@
 import json
-
 from typing import Any
+
 from rich.console import Console
 from rich.table import Table
 
+from vantage6.common import debug, info
+
 from vantage6.client import UserClient
-from vantage6.common import info, debug
+
 from vantage6.cli.globals import DIAGNOSTICS_IMAGE
 
 
@@ -62,7 +64,7 @@ class DiagnosticRunner:
                 set(self.organization_ids).intersection(online_orgs)
             )
 
-        info(f"Running diagnostics to {len(self.organization_ids)} " "organization(s)")
+        info(f"Running diagnostics to {len(self.organization_ids)} organization(s)")
         info(f"  organizations: {self.organization_ids}")
         info(f"  collaboration: {self.collaboration_id}")
 

vantage6/cli/use/namespace.py

@@ -2,9 +2,10 @@ import click
 import questionary
 from kubernetes import client, config
 
+from vantage6.common import error
+
 from vantage6.cli.config import CliConfig
 from vantage6.cli.utils import switch_context_and_namespace
-from vantage6.common import error
 
 
 @click.command()

{vantage6-5.0.0a35.dist-info → vantage6-5.0.0a36.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: vantage6
-Version: 5.0.0a35
+Version: 5.0.0a36
 Summary: vantage6 command line interface
 Author: Vantage6 Team
 Maintainer-email: Frank Martin <f.martin@iknl.nl>, Bart van Beusekom <b.vanbeusekom@iknl.nl>
@@ -18,8 +18,8 @@ Requires-Dist: questionary==1.10.0
 Requires-Dist: rich==13.5.2
 Requires-Dist: schema==0.7.5
 Requires-Dist: sqlalchemy==2.0.37
-Requires-Dist: vantage6-client==5.0.0a35
-Requires-Dist: vantage6-common==5.0.0a35
+Requires-Dist: vantage6-client==5.0.0a36
+Requires-Dist: vantage6-common==5.0.0a36
 Provides-Extra: dev
 Requires-Dist: black; extra == 'dev'
 Requires-Dist: coverage==7.10.2; extra == 'dev'

{vantage6-5.0.0a35.dist-info → vantage6-5.0.0a36.dist-info}/RECORD

@@ -1,75 +1,86 @@
 vantage6/cli/__init__.py,sha256=8KIgMPbZTNdkYlUrB8irpsUA7KdkFdLbNbMKixOP2dE,277
-vantage6/cli/cli.py,sha256=1Se1g-qEeC3NrPyTosIT4EPbl-WAnqCwL1mTZyEL5Pc,6552
+vantage6/cli/cli.py,sha256=LO1VuwB0KZB8fCIQpn1YV68voHMuq1znGpzLbzxLVQE,7806
 vantage6/cli/config.py,sha256=Jqe3VcvoxPrFlvw7cuKt4-5oyL0YTZXvpNsqPybSAYk,7973
-vantage6/cli/configuration_manager.py,sha256=TtD4PdFrKCuN_zeSAouEgi_htlhBqmiNGqI7yui6EmE,5466
-vantage6/cli/configuration_wizard.py,sha256=JFGeBagW5D4R-sGCXzqU9WpUInq0w7h0MVlbxYC7Q8Q,6634
-vantage6/cli/globals.py,sha256=kbxRcpCFmyIKOma3rWfrcPnV7k5H7MHG9-yY2orzauY,2627
+vantage6/cli/configuration_manager.py,sha256=-wIiqBwzxr7BiBcV7juPSFRdrwbhsR8OHUKADZE5cBQ,6317
+vantage6/cli/configuration_wizard.py,sha256=S1D4gze-kMlR-YperseYuG4VixOFwYxOr5Jt0t67zVU,6857
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 vantage6/cli/utils.py,sha256=9ZNHtTnOH2RqgYgnoyMR5EJpBE-_kYXEbuHtfrG3ul0,4275
 vantage6/cli/algorithm/create.py,sha256=kRT1BlBcb0fDaB2Q988WxtA6EyAZmOW5QoU2uhbwBIo,2075
-vantage6/cli/algorithm/generate_algorithm_json.py,sha256=huaqoadhz-2-Sy6SON9zFe_cAatvE7dtTQazvmNOgMA,19558
-vantage6/cli/algorithm/update.py,sha256=WwAfTnq0kTOgePUsBzGoo1AJQqGMn82E9Bjk1wf61CQ,1338
-vantage6/cli/algostore/attach.py,sha256=0WzLnKigJAelPpL5EaWcnRuUyQzMSofrrZfEzwDIvSw,311
-vantage6/cli/algostore/files.py,sha256=r89VRixK_K-c44qseq58Aa2Dqf1wEf8yompQRN5AVu4,580
-vantage6/cli/algostore/list.py,sha256=xBCnwGbuWY_rrx6jrFX8JVAEFXh8GwqwicqpxMiaSa8,418
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 vantage6/cli/algostore/new.py,sha256=7eVovSdNBO_Yj-FQmlV0TTl13Vv4qKP5zA_HuHZMglk,3454
 vantage6/cli/algostore/remove.py,sha256=JsZ1L3qH2k_G3Zei-fhb_dApah91gdJKKv2vfsWK6Os,1006
 vantage6/cli/algostore/start.py,sha256=15ZebThxgw4H1G8CswRNNoU1bYNflhQ-dWIkzEkwUi0,2137
 vantage6/cli/algostore/stop.py,sha256=AF6ay7y6dlCvjPa3ctFOESAfHEA74eK4dKT4o-iFTLE,1814
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 vantage6/cli/common/decorator.py,sha256=KF3uFjmn00qtTSD90BLczaX-gqvlt2Kud4PJGm7P4jU,3627
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 vantage6/cli/common/remove.py,sha256=sJaPF5y1Gd14I4Xg5QRBq3d1x4j2KF4Ys6wVDuqE6HQ,1697
-vantage6/cli/common/start.py,sha256=jErssa0-E4tl3RI2BMND4PFmLQm3uZzhUJ45cuZEHw8,9784
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 vantage6/cli/common/stop.py,sha256=S3IeV_myD01CdSUvl6hkf4qWlWQZ_oUgIkbJoGsQK-Q,4989
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 vantage6/cli/context/algorithm_store.py,sha256=qTNRrCo_EWVAfSC4eg_MohSf_Ra4U3tZvB8EwZZREEw,4044
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 vantage6/cli/context/node.py,sha256=GaU52z4dMnZMDMj3MZACL0VeWZLeeM3lRNvMKlqA1J4,7304
 vantage6/cli/context/server.py,sha256=o2HMlDEg7RbU44AfwNPln8K64FX4SQ_IgULFY_GBhEI,4837
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 vantage6/cli/node/attach.py,sha256=5wB6vjp-m44cQx-C20QBo5WhbHqjxrfWWFzTa5YCyww,277
 vantage6/cli/node/create_private_key.py,sha256=gmgI9Gtcx3z0esxyLw-96HcrfmAJFOjjXbVvA9ZGN3g,5129
 vantage6/cli/node/files.py,sha256=y7WOGHCTE3DnmxgbweLcu51t0YLS9Jvl24zgCHKkQTQ,1003
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 vantage6/cli/node/new.py,sha256=gs0okv4jnh3jPmENNH2RzXxG8Q-bbPmbjxioQOyjUH8,12395
 vantage6/cli/node/remove.py,sha256=alInSH_3E-yJthQ8JrGaopvAZ7GgxuRBppnpC8BRTBU,1061
 vantage6/cli/node/restart.py,sha256=hJWzyJjetfNe8YYkOt5ZEUE_t-LpvQOwUGcQH0pXfNQ,3122
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