vantage6 4.0.3__py3-none-any.whl → 4.1.0b0__py3-none-any.whl

vantage6/cli/server/import_.py

@@ -0,0 +1,144 @@
+import os
+from threading import Thread
+
+import click
+import docker
+from sqlalchemy.engine.url import make_url
+
+from vantage6.common import info, warning
+from vantage6.common.docker.addons import check_docker_running
+from vantage6.common.globals import (
+    APPNAME,
+    DEFAULT_DOCKER_REGISTRY,
+    DEFAULT_SERVER_IMAGE,
+)
+from vantage6.cli.context import ServerContext
+from vantage6.cli.utils import check_config_name_allowed
+from vantage6.cli.server.common import click_insert_context, print_log_worker
+
+
+# TODO this method has a lot of duplicated code from `start`
+@click.command()
+@click.argument('file', type=click.Path(exists=True))
+@click.option('--drop-all', is_flag=True, default=False,
+              help="Drop all existing data before importing")
+@click.option('-i', '--image', default=None, help="Node Docker image to use")
+@click.option('--mount-src', default='',
+              help="Override vantage6 source code in container with the source"
+                   " code in this path")
+@click.option('--keep/--auto-remove', default=False,
+              help="Keep image after finishing. Useful for debugging")
+@click.option('--wait', default=False, help="Wait for the import to finish")
+@click_insert_context
+def cli_server_import(
+    ctx: ServerContext, file: str, drop_all: bool, image: str, mount_src: str,
+    keep: bool, wait: bool
+) -> None:
+    """
+    Import vantage6 resources into a server instance.
+
+    This allows you to create organizations, collaborations, users, tasks, etc
+    from a yaml file.
+
+    The FILE_ argument should be a path to a yaml file containing the vantage6
+    formatted data to import.
+    """
+    # will print an error if not
+    check_docker_running()
+
+    info("Starting server...")
+    info("Finding Docker daemon.")
+    docker_client = docker.from_env()
+
+    # check if name is allowed for docker volume, else exit
+    check_config_name_allowed(ctx.name)
+
+    # pull latest Docker image
+    if image is None:
+        image = ctx.config.get(
+            "image",
+            f"{DEFAULT_DOCKER_REGISTRY}/{DEFAULT_SERVER_IMAGE}"
+        )
+    info(f"Pulling latest server image '{image}'.")
+    try:
+        docker_client.images.pull(image)
+    except Exception as e:
+        warning(' ... Getting latest node image failed:')
+        warning(f"     {e}")
+    else:
+        info(" ... success!")
+
+    info("Creating mounts")
+    mounts = [
+        docker.types.Mount(
+            "/mnt/config.yaml", str(ctx.config_file), type="bind"
+        ),
+        docker.types.Mount(
+            "/mnt/import.yaml", str(file), type="bind"
+        )
+    ]
+
+    # FIXME: code duplication with cli_server_start()
+    # try to mount database
+    uri = ctx.config['uri']
+    url = make_url(uri)
+    environment_vars = None
+
+    if mount_src:
+        mount_src = os.path.abspath(mount_src)
+        mounts.append(docker.types.Mount("/vantage6", mount_src, type="bind"))
+
+    # If host is None, we're dealing with a file-based DB, like SQLite
+    if (url.host is None):
+        db_path = url.database
+
+        if not os.path.isabs(db_path):
+            # We're dealing with a relative path here -> make it absolute
+            db_path = ctx.data_dir / url.database
+
+        basename = os.path.basename(db_path)
+        dirname = os.path.dirname(db_path)
+        os.makedirs(dirname, exist_ok=True)
+
+        # we're mounting the entire folder that contains the database
+        mounts.append(docker.types.Mount(
+            "/mnt/database/", dirname, type="bind"
+        ))
+
+        environment_vars = {
+            "VANTAGE6_DB_URI": f"sqlite:////mnt/database/{basename}"
+        }
+
+    else:
+        warning(f"Database could not be transferred, make sure {url.host} "
+                "is reachable from the Docker container")
+        info("Consider using the docker-compose method to start a server")
+
+    drop_all_ = "--drop-all" if drop_all else ""
+    cmd = (f'vserver-local import -c /mnt/config.yaml {drop_all_} '
+           '/mnt/import.yaml')
+
+    info(cmd)
+
+    info("Run Docker container")
+    container = docker_client.containers.run(
+        image,
+        command=cmd,
+        mounts=mounts,
+        detach=True,
+        labels={
+            f"{APPNAME}-type": "server",
+            "name": ctx.config_file_name
+        },
+        environment=environment_vars,
+        auto_remove=not keep,
+        tty=True
+    )
+    logs = container.logs(stream=True, stdout=True)
+    Thread(target=print_log_worker, args=(logs,), daemon=False).start()
+
+    info(f"Success! container id = {container.id}")
+
+    if wait:
+        container.wait()
+        info("Container finished!")

vantage6/cli/server/list.py

@@ -0,0 +1,60 @@
+import click
+import docker
+
+from colorama import (Fore, Style)
+
+from vantage6.common import warning
+from vantage6.common.docker.addons import check_docker_running
+from vantage6.common.globals import APPNAME
+from vantage6.cli.context import ServerContext
+
+
+@click.command()
+def cli_server_configuration_list() -> None:
+    """
+    Print the available server configurations.
+    """
+    check_docker_running()
+    client = docker.from_env()
+
+    running_server = client.containers.list(
+        filters={"label": f"{APPNAME}-type=server"})
+    running_node_names = []
+    for node in running_server:
+        running_node_names.append(node.name)
+
+    header = \
+        "\nName"+(21*" ") + \
+        "Status"+(10*" ") + \
+        "System/User"
+
+    click.echo(header)
+    click.echo("-"*len(header))
+
+    running = Fore.GREEN + "Running" + Style.RESET_ALL
+    stopped = Fore.RED + "Not running" + Style.RESET_ALL
+
+    # system folders
+    configs, f1 = ServerContext.available_configurations(system_folders=True)
+    for config in configs:
+        status = running if f"{APPNAME}-{config.name}-system-server" in \
+            running_node_names else stopped
+        click.echo(
+            f"{config.name:25}"
+            f"{status:25} System "
+        )
+
+    # user folders
+    configs, f2 = ServerContext.available_configurations(system_folders=False)
+    for config in configs:
+        status = running if f"{APPNAME}-{config.name}-user-server" in \
+            running_node_names else stopped
+        click.echo(
+            f"{config.name:25}"
+            f"{status:25} User   "
+        )
+
+    click.echo("-"*85)
+    if len(f1)+len(f2):
+        warning(
+             f"{Fore.RED}Failed imports: {len(f1)+len(f2)}{Style.RESET_ALL}")

vantage6/cli/server/new.py

@@ -0,0 +1,50 @@
+import click
+from colorama import (Fore, Style)
+
+from vantage6.common import info, error, check_config_writeable
+from vantage6.cli.globals import DEFAULT_SERVER_SYSTEM_FOLDERS
+from vantage6.cli.context import ServerContext
+from vantage6.cli.configuration_wizard import configuration_wizard
+from vantage6.cli.utils import check_config_name_allowed, prompt_config_name
+
+
+@click.command()
+@click.option('-n', '--name', default=None,
+              help="name of the configuration you want to use.")
+@click.option('--system', 'system_folders', flag_value=True)
+@click.option('--user', 'system_folders', flag_value=False,
+              default=DEFAULT_SERVER_SYSTEM_FOLDERS)
+def cli_server_new(name: str, system_folders: bool) -> None:
+    """
+    Create a new server configuration.
+    """
+    name = prompt_config_name(name)
+
+    # check if name is allowed for docker volume, else exit
+    check_config_name_allowed(name)
+
+    # check that this config does not exist
+    try:
+        if ServerContext.config_exists(name, system_folders):
+            error(f"Configuration {Fore.RED}{name}{Style.RESET_ALL} already "
+                  "exists!")
+            exit(1)
+    except Exception as e:
+        error(e)
+        exit(1)
+
+    # Check that we can write in this folder
+    if not check_config_writeable(system_folders):
+        error("Your user does not have write access to all folders. Exiting")
+        info(f"Create a new server using '{Fore.GREEN}v6 server new "
+             f"--user{Style.RESET_ALL}' instead!")
+        exit(1)
+
+    # create config in ctx location
+    cfg_file = configuration_wizard("server", name, system_folders)
+    info(f"New configuration created: {Fore.GREEN}{cfg_file}{Style.RESET_ALL}")
+
+    # info(f"root user created.")
+    flag = "" if system_folders else "--user"
+    info(f"You can start the server by running {Fore.GREEN}v6 server start "
+         f"{flag}{Style.RESET_ALL}")

vantage6/cli/server/shell.py

@@ -0,0 +1,42 @@
+import subprocess
+
+import click
+import docker
+from colorama import (Fore, Style)
+
+from vantage6.common import info, error, debug as debug_msg
+from vantage6.common.docker.addons import check_docker_running
+from vantage6.common.globals import APPNAME
+from vantage6.cli.context import ServerContext
+from vantage6.cli.server.common import click_insert_context
+
+
+@click.command()
+@click_insert_context
+def cli_server_shell(ctx: ServerContext) -> None:
+    """
+    Run an iPython shell within a running server. This can be used to modify
+    the database.
+
+    NOTE: using the shell is no longer recommended as there is no validation on
+    the changes that you make. It is better to use the Python client or a
+    graphical user interface instead.
+    """
+    # will print an error if not
+    check_docker_running()
+
+    docker_client = docker.from_env()
+
+    running_servers = docker_client.containers.list(
+        filters={"label": f"{APPNAME}-type=server"})
+
+    if ctx.docker_container_name not in [s.name for s in running_servers]:
+        error(f"Server {Fore.RED}{ctx.name}{Style.RESET_ALL} is not running?")
+        return
+
+    try:
+        subprocess.run(['docker', 'exec', '-it', ctx.docker_container_name,
+                        'vserver-local', 'shell', '-c', '/mnt/config.yaml'])
+    except Exception as e:
+        info("Failed to start subprocess...")
+        debug_msg(e)

vantage6/cli/server/start.py

@@ -0,0 +1,302 @@
+import os
+from threading import Thread
+import time
+
+import click
+import docker
+from colorama import (Fore, Style)
+from sqlalchemy.engine.url import make_url
+from docker.client import DockerClient
+
+from vantage6.common import info, warning, error
+from vantage6.common.docker.addons import (
+    pull_if_newer, check_docker_running
+)
+from vantage6.common.docker.network_manager import NetworkManager
+from vantage6.common.globals import (
+    APPNAME,
+    DEFAULT_DOCKER_REGISTRY,
+    DEFAULT_SERVER_IMAGE,
+    DEFAULT_UI_IMAGE
+)
+
+from vantage6.cli.globals import DEFAULT_UI_PORT
+from vantage6.cli.context import ServerContext
+from vantage6.cli.utils import check_config_name_allowed
+from vantage6.cli.rabbitmq.queue_manager import RabbitMQManager
+from vantage6.cli.server.common import (
+    click_insert_context, print_log_worker, stop_ui
+)
+
+
+@click.command()
+@click.option('--ip', default=None, help='IP address to listen on')
+@click.option('-p', '--port', default=None, type=int, help='Port to listen on')
+@click.option('-i', '--image', default=None, help="Server Docker image to use")
+@click.option('--with-ui', 'start_ui', flag_value=True, default=False,
+              help="Start the graphical User Interface as well")
+@click.option('--ui-port', default=None, type=int,
+              help="Port to listen on for the User Interface")
+@click.option('--with-rabbitmq', 'start_rabbitmq', flag_value=True,
+              default=False, help="Start RabbitMQ message broker as local "
+              "container - use in development only")
+@click.option('--rabbitmq-image', default=None,
+              help="RabbitMQ docker image to use")
+@click.option('--keep/--auto-remove', default=False,
+              help="Keep image after server has stopped. Useful for debugging")
+@click.option('--mount-src', default='',
+              help="Override vantage6 source code in container with the source"
+              " code in this path")
+@click.option('--attach/--detach', default=False,
+              help="Print server logs to the console after start")
+@click_insert_context
+def cli_server_start(ctx: ServerContext, ip: str, port: int, image: str,
+                     start_ui: bool, ui_port: int, start_rabbitmq: bool,
+                     rabbitmq_image: str, keep: bool, mount_src: str,
+                     attach: bool) -> None:
+    """
+    Start the server.
+    """
+    # will print an error if not
+    check_docker_running()
+
+    info("Starting server...")
+    info("Finding Docker daemon.")
+    docker_client = docker.from_env()
+
+    # check if name is allowed for docker volume, else exit
+    check_config_name_allowed(ctx.name)
+
+    # check that this server is not already running
+    running_servers = docker_client.containers.list(
+        filters={"label": f"{APPNAME}-type=server"})
+    for server in running_servers:
+        if server.name == f"{APPNAME}-{ctx.name}-{ctx.scope}-server":
+            error(f"Server {Fore.RED}{ctx.name}{Style.RESET_ALL} "
+                  "is already running")
+            exit(1)
+
+    # Determine image-name. First we check if the option --image has been used.
+    # Then we check if the image has been specified in the config file, and
+    # finally we use the default settings from the package.
+    if image is None:
+        custom_images: dict = ctx.config.get('images')
+        if custom_images:
+            image = custom_images.get('server')
+        if not image:
+            image = f"{DEFAULT_DOCKER_REGISTRY}/{DEFAULT_SERVER_IMAGE}"
+
+    info(f"Pulling latest server image '{image}'.")
+    try:
+        pull_if_newer(docker.from_env(), image)
+        # docker_client.images.pull(image)
+    except Exception as e:
+        warning(' ... Getting latest server image failed:')
+        warning(f"     {e}")
+    else:
+        info(" ... success!")
+
+    info("Creating mounts")
+    config_file = "/mnt/config.yaml"
+    mounts = [
+        docker.types.Mount(
+            config_file, str(ctx.config_file), type="bind"
+        )
+    ]
+
+    if mount_src:
+        mount_src = os.path.abspath(mount_src)
+        mounts.append(docker.types.Mount("/vantage6", mount_src, type="bind"))
+    # FIXME: code duplication with cli_server_import()
+    # try to mount database
+    uri = ctx.config['uri']
+    url = make_url(uri)
+    environment_vars = None
+
+    # If host is None, we're dealing with a file-based DB, like SQLite
+    if (url.host is None):
+        db_path = url.database
+
+        if not os.path.isabs(db_path):
+            # We're dealing with a relative path here -> make it absolute
+            db_path = ctx.data_dir / url.database
+
+        basename = os.path.basename(db_path)
+        dirname = os.path.dirname(db_path)
+        os.makedirs(dirname, exist_ok=True)
+
+        # we're mounting the entire folder that contains the database
+        mounts.append(docker.types.Mount(
+            "/mnt/database/", dirname, type="bind"
+        ))
+
+        environment_vars = {
+            "VANTAGE6_DB_URI": f"sqlite:////mnt/database/{basename}",
+            "VANTAGE6_CONFIG_NAME": ctx.config_file_name
+        }
+
+    else:
+        warning(f"Database could not be transferred, make sure {url.host} "
+                "is reachable from the Docker container")
+        info("Consider using the docker-compose method to start a server")
+
+    # Create a docker network for the server and other services like RabbitMQ
+    # to reside in
+    server_network_mgr = NetworkManager(
+        network_name=f"{APPNAME}-{ctx.name}-{ctx.scope}-network"
+    )
+    server_network_mgr.create_network(is_internal=False)
+
+    if start_rabbitmq or ctx.config.get('rabbitmq') and \
+            ctx.config['rabbitmq'].get('start_with_server', False):
+        # Note that ctx.data_dir has been created at this point, which is
+        # required for putting some RabbitMQ configuration files inside
+        info('Starting RabbitMQ container')
+        _start_rabbitmq(ctx, rabbitmq_image, server_network_mgr)
+    elif ctx.config.get('rabbitmq'):
+        info("RabbitMQ is provided in the config file as external service. "
+             "Assuming this service is up and running.")
+    else:
+        warning('Message queue disabled! This means that the vantage6 server '
+                'cannot be scaled horizontally!')
+
+    # start the UI if requested
+    if start_ui or ctx.config.get('ui') and ctx.config['ui'].get('enabled'):
+        _start_ui(docker_client, ctx, ui_port)
+
+    # The `ip` and `port` refer here to the ip and port within the container.
+    # So we do not really care that is it listening on all interfaces.
+    internal_port = 5000
+    cmd = (
+        f'uwsgi --http :{internal_port} --gevent 1000 --http-websockets '
+        '--master --callable app --disable-logging '
+        '--wsgi-file /vantage6/vantage6-server/vantage6/server/wsgi.py '
+        f'--pyargv {config_file}'
+    )
+    info(cmd)
+
+    info("Run Docker container")
+    port_ = str(port or ctx.config["port"] or 5000)
+    container = docker_client.containers.run(
+        image,
+        command=cmd,
+        mounts=mounts,
+        detach=True,
+        labels={
+            f"{APPNAME}-type": "server",
+            "name": ctx.config_file_name
+        },
+        environment=environment_vars,
+        ports={f"{internal_port}/tcp": (ip, port_)},
+        name=ctx.docker_container_name,
+        auto_remove=not keep,
+        tty=True,
+        network=server_network_mgr.network_name
+    )
+
+    info(f"Success! container id = {container.id}")
+
+    if attach:
+        logs = container.attach(stream=True, logs=True, stdout=True)
+        Thread(target=print_log_worker, args=(logs,), daemon=True).start()
+        while True:
+            try:
+                time.sleep(1)
+            except KeyboardInterrupt:
+                info("Closing log file. Keyboard Interrupt.")
+                info("Note that your server is still running! Shut it down "
+                     f"with {Fore.RED}v6 server stop{Style.RESET_ALL}")
+                exit(0)
+
+
+def _start_rabbitmq(ctx: ServerContext, rabbitmq_image: str,
+                    network_mgr: NetworkManager) -> None:
+    """
+    Start the RabbitMQ container if it is not already running.
+
+    Parameters
+    ----------
+    ctx : ServerContext
+        Server context object
+    rabbitmq_image : str
+        RabbitMQ image to use
+    network_mgr : NetworkManager
+        Network manager object
+    """
+    rabbit_uri = ctx.config['rabbitmq'].get('uri')
+    if not rabbit_uri:
+        error("No RabbitMQ URI found in the configuration file! Please add"
+              "a 'uri' key to the 'rabbitmq' section of the configuration.")
+        exit(1)
+    # kick off RabbitMQ container
+    rabbit_mgr = RabbitMQManager(
+        ctx=ctx, network_mgr=network_mgr, image=rabbitmq_image)
+    rabbit_mgr.start()
+
+
+def _start_ui(client: DockerClient, ctx: ServerContext, ui_port: int) -> None:
+    """
+    Start the UI container.
+
+    Parameters
+    ----------
+    client : DockerClient
+        Docker client
+    ctx : ServerContext
+        Server context object
+    ui_port : int
+        Port to expose the UI on
+    """
+    # if no port is specified, check if config contains a port
+    ui_config = ctx.config.get('ui')
+    if ui_config and not ui_port:
+        ui_port = ui_config.get('port')
+
+    # check if the port is valid
+    # TODO make function to check if port is valid, and use in more places
+    if not isinstance(ui_port, int) or not 0 < ui_port < 65536:
+        warning(f"UI port '{ui_port}' is not valid! Using default port "
+                f"{DEFAULT_UI_PORT}")
+        ui_port = DEFAULT_UI_PORT
+
+    # find image to use
+    custom_images: dict = ctx.config.get('images')
+    image = None
+    if custom_images:
+        image = custom_images.get('ui')
+    if not image:
+        image = f"{DEFAULT_DOCKER_REGISTRY}/{DEFAULT_UI_IMAGE}"
+
+    info(f"Pulling latest UI image '{image}'.")
+    try:
+        pull_if_newer(docker.from_env(), image)
+        # docker_client.images.pull(image)
+    except Exception as e:
+        warning(' ... Getting latest node image failed:')
+        warning(f"     {e}")
+    else:
+        info(" ... success!")
+
+    # set environment variables
+    env_vars = {
+        "SERVER_URL": f"http://localhost:{ctx.config.get('port')}",
+        "API_PATH": ctx.config.get("api_path"),
+    }
+
+    # stop the UI container if it is already running
+    stop_ui(client, ctx)
+
+    info(f'Starting User Interface at port {ui_port}')
+    ui_container_name = f"{APPNAME}-{ctx.name}-{ctx.scope}-ui"
+    client.containers.run(
+        image,
+        detach=True,
+        labels={
+            f"{APPNAME}-type": "ui",
+            "name": ctx.config_file_name
+        },
+        ports={"80/tcp": (ctx.config.get('ip'), ui_port)},
+        name=ui_container_name,
+        environment=env_vars,
+        tty=True,
+    )