valor-lite 0.36.6__py3-none-any.whl → 0.37.5__py3-none-any.whl

valor_lite/semantic_segmentation/shared.py

@@ -0,0 +1,149 @@
+from dataclasses import dataclass
+from pathlib import Path
+
+import numpy as np
+import pyarrow as pa
+import pyarrow.compute as pc
+
+from valor_lite.cache import FileCacheReader, MemoryCacheReader
+
+
+@dataclass
+class EvaluatorInfo:
+    number_of_rows: int = 0
+    number_of_datums: int = 0
+    number_of_labels: int = 0
+    number_of_pixels: int = 0
+    number_of_groundtruth_pixels: int = 0
+    number_of_prediction_pixels: int = 0
+    metadata_fields: list[tuple[str, str | pa.DataType]] | None = None
+
+
+def generate_cache_path(path: str | Path) -> Path:
+    """Generate cache path from parent directory."""
+    return Path(path) / "counts"
+
+
+def generate_metadata_path(path: str | Path) -> Path:
+    """Generate metadata path from parent directory."""
+    return Path(path) / "metadata.json"
+
+
+def generate_schema(
+    metadata_fields: list[tuple[str, str | pa.DataType]] | None
+) -> pa.Schema:
+    """Generate PyArrow schema from metadata fields."""
+
+    metadata_fields = metadata_fields if metadata_fields else []
+    reserved_fields = [
+        ("datum_uid", pa.string()),
+        ("datum_id", pa.int64()),
+        # groundtruth
+        ("gt_label", pa.string()),
+        ("gt_label_id", pa.int64()),
+        # prediction
+        ("pd_label", pa.string()),
+        ("pd_label_id", pa.int64()),
+        # pair
+        ("count", pa.uint64()),
+    ]
+
+    # validate
+    reserved_field_names = {f[0] for f in reserved_fields}
+    metadata_field_names = {f[0] for f in metadata_fields}
+    if conflicting := reserved_field_names & metadata_field_names:
+        raise ValueError(
+            f"metadata fields {conflicting} conflict with reserved fields"
+        )
+
+    return pa.schema(
+        [
+            *reserved_fields,
+            *metadata_fields,
+        ]
+    )
+
+
+def encode_metadata_fields(
+    metadata_fields: list[tuple[str, str | pa.DataType]] | None
+) -> dict[str, str]:
+    """Encode metadata fields into JSON format."""
+    metadata_fields = metadata_fields if metadata_fields else []
+    return {k: str(v) for k, v in metadata_fields}
+
+
+def decode_metadata_fields(
+    encoded_metadata_fields: dict[str, str]
+) -> list[tuple[str, str | pa.DataType]]:
+    """Decode metadata fields from JSON format."""
+    return [(k, v) for k, v in encoded_metadata_fields.items()]
+
+
+def extract_labels(
+    reader: MemoryCacheReader | FileCacheReader,
+    index_to_label_override: dict[int, str] | None = None,
+) -> dict[int, str]:
+    if index_to_label_override is not None:
+        return index_to_label_override
+
+    index_to_label = {}
+    for tbl in reader.iterate_tables(
+        columns=[
+            "gt_label_id",
+            "gt_label",
+            "pd_label_id",
+            "pd_label",
+        ]
+    ):
+
+        # get gt labels
+        gt_label_ids = tbl["gt_label_id"].to_numpy()
+        gt_label_ids, gt_indices = np.unique(gt_label_ids, return_index=True)
+        gt_labels = tbl["gt_label"].take(gt_indices).to_pylist()
+        gt_labels = dict(zip(gt_label_ids.astype(int).tolist(), gt_labels))
+        gt_labels.pop(-1, None)
+        index_to_label.update(gt_labels)
+
+        # get pd labels
+        pd_label_ids = tbl["pd_label_id"].to_numpy()
+        pd_label_ids, pd_indices = np.unique(pd_label_ids, return_index=True)
+        pd_labels = tbl["pd_label"].take(pd_indices).to_pylist()
+        pd_labels = dict(zip(pd_label_ids.astype(int).tolist(), pd_labels))
+        pd_labels.pop(-1, None)
+        index_to_label.update(pd_labels)
+
+    return index_to_label
+
+
+def extract_counts(
+    reader: MemoryCacheReader | FileCacheReader,
+    datums: pc.Expression | None = None,
+    groundtruths: pc.Expression | None = None,
+    predictions: pc.Expression | None = None,
+):
+    n_dts, n_total, n_gts, n_pds = 0, 0, 0, 0
+    for tbl in reader.iterate_tables(filter=datums):
+
+        # count datums
+        n_dts += int(np.unique(tbl["datum_id"].to_numpy()).shape[0])
+
+        # count pixels
+        n_total += int(tbl["count"].to_numpy().sum())
+
+        # count groundtruth pixels
+        gt_tbl = tbl
+        gt_expr = pc.field("gt_label_id") >= 0
+        if groundtruths is not None:
+            gt_expr &= groundtruths
+        gt_tbl = tbl.filter(gt_expr)
+        n_gts += int(gt_tbl["count"].to_numpy().sum())
+
+        # count prediction pixels
+        pd_tbl = tbl
+        pd_expr = pc.field("pd_label_id") >= 0
+        if predictions is not None:
+            pd_expr &= predictions
+        pd_tbl = tbl.filter(pd_expr)
+        n_pds += int(pd_tbl["count"].to_numpy().sum())
+
+    return n_dts, n_total, n_gts, n_pds

valor_lite/semantic_segmentation/utilities.py

@@ -1,15 +1,11 @@
 from collections import defaultdict
 
-import numpy as np
-from numpy.typing import NDArray
-
 from valor_lite.semantic_segmentation.metric import Metric, MetricType
 
 
 def unpack_precision_recall_iou_into_metric_lists(
     results: tuple,
-    label_metadata: NDArray[np.int64],
-    index_to_label: list[str],
+    index_to_label: dict[int, str],
 ) -> dict[MetricType, list[Metric]]:
 
     n_labels = len(index_to_label)
@@ -39,24 +35,20 @@ def unpack_precision_recall_iou_into_metric_lists(
                         "iou": float(ious[gt_label_idx, pd_label_idx])
                     }
                     for pd_label_idx in range(n_labels)
-                    if label_metadata[pd_label_idx, 0] > 0
                 }
                 for gt_label_idx in range(n_labels)
-                if label_metadata[gt_label_idx, 0] > 0
             },
             unmatched_predictions={
                 index_to_label[pd_label_idx]: {
                     "ratio": float(unmatched_prediction_ratios[pd_label_idx])
                 }
                 for pd_label_idx in range(n_labels)
-                if label_metadata[pd_label_idx, 0] > 0
             },
             unmatched_ground_truths={
                 index_to_label[gt_label_idx]: {
                     "ratio": float(unmatched_ground_truth_ratios[gt_label_idx])
                 }
                 for gt_label_idx in range(n_labels)
-                if label_metadata[gt_label_idx, 0] > 0
             },
         )
     ]
@@ -67,38 +59,29 @@ def unpack_precision_recall_iou_into_metric_lists(
         )
     ]
 
-    for label_idx, label in enumerate(index_to_label):
-
-        kwargs = {
-            "label": label,
-        }
-
-        # if no groundtruths exists for a label, skip it.
-        if label_metadata[label_idx, 0] == 0:
-            continue
-
+    for label_idx, label in index_to_label.items():
         metrics[MetricType.Precision].append(
             Metric.precision(
                 value=float(precision[label_idx]),
-                **kwargs,
+                label=label,
             )
         )
         metrics[MetricType.Recall].append(
             Metric.recall(
                 value=float(recall[label_idx]),
-                **kwargs,
+                label=label,
             )
         )
         metrics[MetricType.F1].append(
             Metric.f1_score(
                 value=float(f1_score[label_idx]),
-                **kwargs,
+                label=label,
             )
         )
         metrics[MetricType.IOU].append(
             Metric.iou(
                 value=float(ious[label_idx, label_idx]),
-                **kwargs,
+                label=label,
             )
         )
 

{valor_lite-0.36.6.dist-info → valor_lite-0.37.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: valor-lite
-Version: 0.36.6
+Version: 0.37.5
 Summary: Evaluate machine learning models.
 Project-URL: homepage, https://www.striveworks.com
 Requires-Python: >=3.10
@@ -8,6 +8,7 @@ Description-Content-Type: text/markdown
 Requires-Dist: numpy
 Requires-Dist: tqdm
 Requires-Dist: shapely
+Requires-Dist: pyarrow
 Provides-Extra: nlp
 Requires-Dist: evaluate; extra == "nlp"
 Requires-Dist: nltk; extra == "nlp"
@@ -31,6 +32,7 @@ Provides-Extra: benchmark
 Requires-Dist: requests; extra == "benchmark"
 Provides-Extra: dev
 Requires-Dist: valor-lite[benchmark,docs,mistral,nlp,openai,test]; extra == "dev"
+Requires-Dist: pyarrow-stubs; extra == "dev"
 
 # valor-lite: Fast, local machine learning evaluation.
 

valor_lite-0.37.5.dist-info/RECORD

@@ -0,0 +1,49 @@
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+valor_lite/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+valor_lite/exceptions.py,sha256=Odg4m7VfTYtGunzA-JpNWGoDwvXFvCamkQu8WLncE-A,496
+valor_lite/schemas.py,sha256=pB0MrPx5qFLbwBWDiOUUm-vmXdWvbJLFCBmKgbcbI5g,198
+valor_lite/cache/__init__.py,sha256=OzVJq6WMXOmhJPQLOVu9y0xEui41PDpwGnkrU6A3-dA,266
+valor_lite/cache/compute.py,sha256=1OP7h_00asTydA3ZSPZeMgqiwlvxu6RfzsOyvqDAwEg,6906
+valor_lite/cache/ephemeral.py,sha256=BPUtVVE3RuU0_gB87CPZUBTbnUbcdz4MMsUhs_YLzDE,8164
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+valor_lite-0.37.5.dist-info/top_level.txt,sha256=9ujykxSwpl2Hu0_R95UQTR_l07k9UUTSdrpiqmq6zc4,11
+valor_lite-0.37.5.dist-info/RECORD,,

{valor_lite-0.36.6.dist-info → valor_lite-0.37.5.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: setuptools (80.10.2)
 Root-Is-Purelib: true
 Tag: py3-none-any