uht-tooling 0.1.5__py3-none-any.whl → 0.1.7__py3-none-any.whl

uht_tooling/cli.py

@@ -18,6 +18,10 @@ from uht_tooling.workflows.umi_hunter import (
     expand_fastq_inputs as expand_fastq_inputs_umi,
     run_umi_hunter,
 )
+from uht_tooling.workflows.mut_rate import (
+    expand_fastq_inputs as expand_fastq_inputs_ep,
+    run_ep_library_profile,
+)
 from uht_tooling.workflows.gui import launch_gui
 
 app = typer.Typer(help="Command-line interface for the uht-tooling package.")

{uht_tooling-0.1.5.dist-info → uht_tooling-0.1.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: uht-tooling
-Version: 0.1.5
+Version: 0.1.7
 Summary: Tooling for ultra-high throughput screening workflows.
 Author: Matt115A
 License: MIT
@@ -18,6 +18,8 @@ Requires-Dist: seaborn==0.13.2
 Requires-Dist: tabulate==0.9.0
 Requires-Dist: tqdm==4.67.1
 Requires-Dist: typer==0.20.0
+Requires-Dist: mappy==2.30
+Requires-Dist: gradio==5.49.1
 Provides-Extra: gui
 Requires-Dist: gradio==5.49.1; extra == "gui"
 Provides-Extra: dev
@@ -35,16 +37,18 @@ Automation helpers for ultra-high-throughput molecular biology workflows. The pa
 
 ### Quick install (recommended, easiest file maintainance)
 ```bash
-pip install "uht-tooling[gui]==0.1.4"
+pip install "uht-tooling[gui]"
 
 ```
 
-This installs the core workflows plus the optional GUI dependencies (Gradio, pandas). Omit the `[gui]` extras if you only need the CLI:
+This installs the core workflows plus the optional GUI dependency (Gradio). Omit the `[gui]` extras if you only need the CLI:
 
 ```bash
 pip install uht-tooling
 ```
 
+You will need a functioning version of mafft - you should install this separately and it should be accessible from your environment.
+
 ### Development install
 ```bash
 git clone https://github.com/Matt115A/uht-tooling-packaged.git

{uht_tooling-0.1.5.dist-info → uht_tooling-0.1.7.dist-info}/RECORD

@@ -1,5 +1,5 @@
 uht_tooling/__init__.py,sha256=hf0tJaa4_9y9aYb8OB1FtJh1FOuX08dQ6_MCveWFNAc,242
-uht_tooling/cli.py,sha256=yKTPqWwYAs7tzO_TeyaLhSfzkNoCUPnc0wU2fgOR2wk,12882
+uht_tooling/cli.py,sha256=XnpJbMiuB3g5GL-d2bLf4TsDsd9eWDG-tjaAaMnAPTk,13008
 uht_tooling/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 uht_tooling/workflows/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 uht_tooling/workflows/design_gibson.py,sha256=SQEThq6dxPMPCsUrwqMUaG5I-diE9jUXPRii9Y7O_7U,13617
@@ -10,8 +10,8 @@ uht_tooling/workflows/mutation_caller.py,sha256=BczuNATOSUcmlw-x6qTzEQfW8MBbvGcl
 uht_tooling/workflows/nextera_designer.py,sha256=8MZ_DyQ0JwPojXH5mZ6bAGAkqki_0qQGac45T_Ll8FQ,6170
 uht_tooling/workflows/profile_inserts.py,sha256=C-SZ10YefiV_4QZbo1oEkI4qYipwaYqPP5jF-MC5O58,16947
 uht_tooling/workflows/umi_hunter.py,sha256=baycWycqVzUfMp5u2WZdHRl0sNuykTjy-iqtj5ahucU,15075
-uht_tooling-0.1.5.dist-info/METADATA,sha256=rqbE3jGdLJvbUEXlLmS-VcDMKJHCw0-7l8NKosD9WEQ,12751
-uht_tooling-0.1.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-uht_tooling-0.1.5.dist-info/entry_points.txt,sha256=t3_bMkEnlnV4vd6nrjNQxHDsHzHHoZenhmxuIYLcRBY,53
-uht_tooling-0.1.5.dist-info/top_level.txt,sha256=iTCCiSn0OjrTx1VOdxXhUlPi1TR9LxaJEZJoMyRcv9c,12
-uht_tooling-0.1.5.dist-info/RECORD,,
+uht_tooling-0.1.7.dist-info/METADATA,sha256=YuHkyuvRdznGgVH111anZaqsOBt9k-szz1vJGF-eWy0,12925
+uht_tooling-0.1.7.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+uht_tooling-0.1.7.dist-info/entry_points.txt,sha256=t3_bMkEnlnV4vd6nrjNQxHDsHzHHoZenhmxuIYLcRBY,53
+uht_tooling-0.1.7.dist-info/top_level.txt,sha256=iTCCiSn0OjrTx1VOdxXhUlPi1TR9LxaJEZJoMyRcv9c,12
+uht_tooling-0.1.7.dist-info/RECORD,,