tricc-oo 1.5.22__py3-none-any.whl → 1.5.23__py3-none-any.whl

tricc_oo/visitors/utils.py

@@ -1,17 +1,17 @@
 PROCESSES = [
-        "triage",
-        "emergency-care",
-        "registration",
-        "history-and-physical",
-        "local-urgent-care",
-        "acute-tertiary-care",
-        "diagnostic-testing",
-        "determine-diagnosis",
-        "provide-counseling",
-        "dispense-medications",
-        "monitor-and-follow-up-of-patient",
-        "alerts-reminders-education",
-        "discharge-referral-of-patient",
-        "charge-for-service",
-        "record-and-report",
-    ]
+    "triage",
+    "emergency-care",
+    "registration",
+    "history-and-physical",
+    "local-urgent-care",
+    "acute-tertiary-care",
+    "diagnostic-testing",
+    "determine-diagnosis",
+    "provide-counseling",
+    "dispense-medications",
+    "monitor-and-follow-up-of-patient",
+    "alerts-reminders-education",
+    "discharge-referral-of-patient",
+    "charge-for-service",
+    "record-and-report",
+]

tricc_oo/visitors/xform_pd.py

@@ -4,15 +4,16 @@ Created on Thu Sep  1 11:21:39 2022
 
 @author: kluera
 
-Make subforms that allow to be releoaded seperately as a 'task' in CHT, 
-allowing to simulate a pause functionality. 
+Make subforms that allow to be releoaded seperately as a 'task' in CHT,
+allowing to simulate a pause functionality.
 """
 
 import pandas as pd
-import json
+
 
 def remove_dots(s):
-     return s.replace('.','_')
+    return s.replace(".", "_")
+
 
 def chf_clean_name(s, remove_dots=False):
     # Check if there is a dot in the string
@@ -24,159 +25,161 @@ def chf_clean_name(s, remove_dots=False):
         # If no dot is present, return None or handle it as needed
         return s
 
+
 # df is the dataframe to be split
 # pausepoint is the index of the row after which the form should pause
 def make_breakpoints(df, pausepoint, calculate_name=None, replace_dots=False):
     """
     Creates a dataframe for a follow-up questionnaire while preserving previous inputs.
-    
+
     Args:
         df: Input dataframe containing the questionnaire
         pausepoint: Point where the questionnaire should pause
         calculate_name: Optional name for calculation fields
     """
-    
+
     # Get data points collected before break
-    if 'input end' not in df['name'].values:
+    if "input end" not in df["name"].values:
         raise ValueError("input end field not found in input dataframe")
-    end_inputs_loc = df.index[df['name'] == 'input end'][0]
-    next_begin_group_loc = min([i for i in df.index[df['type'] == 'begin group'] if i > end_inputs_loc])
-    next_pause_point_begin_group_loc = min([i for i in df.index[df['type'] == 'begin group'] if i > pausepoint])
-    
+    end_inputs_loc = df.index[df["name"] == "input end"][0]
+    next_begin_group_loc = min([i for i in df.index[df["type"] == "begin group"] if i > end_inputs_loc])
+    next_pause_point_begin_group_loc = min([i for i in df.index[df["type"] == "begin group"] if i > pausepoint])
+
     df_input = df.loc[next_begin_group_loc:next_pause_point_begin_group_loc]
-    
+
     # Define field types to handle
-    typesconvert = ['integer', 'decimal', 'select_', 'text']
-    typeskeep = ['hidden', 'calculate', 'string'] 
-    
+    typesconvert = ["integer", "decimal", "select_", "text"]
+    typeskeep = ["hidden", "calculate", "string"]
+
     # Create masks for filtering
-    type_mask = df_input['type'].str.contains('|'.join(typeskeep + typesconvert))
-    optin_mask = ~df_input['name'].str.contains('more_info_optin', na=False)
-    
+    type_mask = df_input["type"].str.contains("|".join(typeskeep + typesconvert))
+    optin_mask = ~df_input["name"].str.contains("more_info_optin", na=False)
+
     # Filter dataframe keeping important fields
     df_input = df_input.loc[type_mask & optin_mask]
-    
+
     # Preserve existing hidden fields and their calculations
-    existing_hidden = df_input[df_input['type'] == 'hidden'].copy()
-    
+    existing_hidden = df_input[df_input["type"] == "hidden"].copy()
+
     # Convert specified types to hidden while preserving their data
-    mask_indices = df_input.index[df_input['type'].str.contains('|'.join(typesconvert))]
+    mask_indices = df_input.index[df_input["type"].str.contains("|".join(typesconvert))]
     # Get hidden field names
 
-    df_input.loc[mask_indices, 'type'] = 'hidden'
-    df_input.loc[mask_indices, 'appearance'] = 'hidden'    
+    df_input.loc[mask_indices, "type"] = "hidden"
+    df_input.loc[mask_indices, "appearance"] = "hidden"
 
     # Handle label columns while preserving existing labels where needed
-    label_cols = [col for col in df.columns if 'label' in col]
-    df_input.loc[mask_indices, label_cols] = 'NO_LABEL'
-    
+    label_cols = [col for col in df.columns if "label" in col]
+    df_input.loc[mask_indices, label_cols] = "NO_LABEL"
+
     # Clear non-essential columns while preserving crucial data
-    essential_cols = ['name', 'type', 'calculation'] + label_cols
+    essential_cols = ["name", "type", "calculation"] + label_cols
     other_cols = df_input.columns.drop(essential_cols)
-    df_input[other_cols] = ''
-    
+    df_input[other_cols] = ""
+
     # Preserve calculations for existing hidden fields
-    df_input.update(existing_hidden[['calculation']])
+    df_input.update(existing_hidden[["calculation"]])
     # SAVE THE INPUT NAMES
-    hidden_names = list(df_input.loc[df_input['type']=='hidden', 'name'])
+    hidden_names = list(df_input.loc[df_input["type"] == "hidden", "name"])
     if replace_dots:
-        df_input['name'] = df_input['name'].map(remove_dots)
+        df_input["name"] = df_input["name"].map(remove_dots)
     # Handle indexing and grouping
     df_input.index = df_input.index.map(str)
-    hidden_ids = df_input.loc[df_input['type']=='hidden'].index
-    inputs_group_index = '0'
-    new_hidden_ids = inputs_group_index + '.' + hidden_ids
-    
+    hidden_ids = df_input.loc[df_input["type"] == "hidden"].index
+    inputs_group_index = "0"
+    new_hidden_ids = inputs_group_index + "." + hidden_ids
+
     # Update indices
     index_map = dict(zip(hidden_ids, new_hidden_ids))
     df_input.rename(index=index_map, inplace=True)
     df_input.sort_index(inplace=True)
     df_input.reset_index(drop=True, inplace=True)
-    
+
     if remove_dots:
         # Precompute replacement dictionary
-        replacement_dict = {f'${old_name}': f'${remove_dots(old_name)}' for old_name in hidden_names if '.' in old_name}
+        replacement_dict = {f"${old_name}": f"${remove_dots(old_name)}" for old_name in hidden_names if "." in old_name}
 
         # Apply replacements to entire DataFrame
         df_input = df_input.astype(str).replace(replacement_dict, regex=False)
-    
 
- 
-    
-    
-# put all together
-    if 'data_load' not in df['name'].values:
+    # put all together
+    if "data_load" not in df["name"].values:
         raise ValueError("data_load field not found in input dataframe")
-    data_load_loc = df.index[df['name'] == 'data_load'][0]
-    
+    data_load_loc = df.index[df["name"] == "data_load"][0]
+
     # Split the dataframe into three parts
     df_before_data_load = df.loc[:data_load_loc]  # Everything up to data_load
-    df_until_begin_group = df.loc[data_load_loc+1:next_begin_group_loc-1]  # From data_load to next begin_group
-    
+    df_until_begin_group = df.loc[data_load_loc + 1: next_begin_group_loc - 1]  # From data_load to next begin_group
+
     # Reset indices for proper concatenation
     df_input = df_input.reset_index(drop=True)
     df_before_data_load = df_before_data_load.reset_index(drop=True)
     df_until_begin_group = df_until_begin_group.reset_index(drop=True)
-    
+
     # Concatenate in the correct order
-    df_combined = pd.concat([
-        df_before_data_load,  # First part until data_load
-        df_input,            # Injected converted fields
-        df_until_begin_group # Remaining part until next begin_group
-    ]).reset_index(drop=True)
-    
+    df_combined = pd.concat(
+        [
+            df_before_data_load,  # First part until data_load
+            df_input,  # Injected converted fields
+            df_until_begin_group,  # Remaining part until next begin_group
+        ]
+    ).reset_index(drop=True)
+
     # Handle post-break section
     df_after = df.loc[next_pause_point_begin_group_loc:].reset_index(drop=True)
 
-    
     # Final concatenation
     final_df = pd.concat([df_combined, df_after])
     if calculate_name:
-        final_df.loc[final_df['name']=='hidden','calculation']='0'
-    
-    final_df.fillna('', inplace=True)
+        final_df.loc[final_df["name"] == "hidden", "calculation"] = "0"
+
+    final_df.fillna("", inplace=True)
     final_df.reset_index(inplace=True, drop=True)
-    
-    return final_df, hidden_names
 
+    return final_df, hidden_names
 
 
 def get_tasksstrings(hidden_names, df_survey):
-    '''This function makes a list of strings of hidden fields that will be loaded into a form that continues the consultation. 
-    This is very handy as this string must be pasted into the tasks.js file in CHT. 
+    """This function makes a list of strings of hidden fields that will be loaded
+    into a form that continues the consultation.
+    This is very handy as this string must be pasted into the tasks.js file in CHT.
     @hidden_names: are the names of the 'hidden' fields in the input group of the follow up form
     @df_survey: is the survey tab of the complete (original) form without breaks, going from A to Z
-    @tasks_strings: is the string that has to be pasted into tasks.js'''
-    
+    @tasks_strings: is the string that has to be pasted into tasks.js"""
+
     task_string_template = "content['{variableName}'] = getField(report, '{full_path}')"
     task_strings = {}
     for s in hidden_names:
-        df_above_s = df_survey.iloc[:df_survey.loc[df_survey['name']==s].index[0]]
-        df_above_s_groups = df_above_s.loc[df_above_s['type'].isin(['begin group', 'end group'])]
+        df_above_s = df_survey.iloc[: df_survey.loc[df_survey["name"] == s].index[0]]
+        df_above_s_groups = df_above_s.loc[df_above_s["type"].isin(["begin group", "end group"])]
         above_s_grouprows = df_above_s_groups.index
         fullpath = []
         for i in above_s_grouprows:
-            if df_above_s.iloc[i]['type']=='begin group':
-                fullpath.append(df_above_s.iloc[i]['name'])
-            else: 
+            if df_above_s.iloc[i]["type"] == "begin group":
+                fullpath.append(df_above_s.iloc[i]["name"])
+            else:
                 fullpath = fullpath[:-1]
-        if len(fullpath)>0:
-            line = task_string_template.format(
-                variableName=s, full_path='.'.join(fullpath) + chf_clean_name(s)
-            )
+        if len(fullpath) > 0:
+            line = task_string_template.format(variableName=s, full_path=".".join(fullpath) + chf_clean_name(s))
         else:
-            line = task_string_template.format(
-                variableName=s, full_path=chf_clean_name(s)
-            )
-        task_strings[s]=line
-    return  list(task_strings.values())
-
-
-def get_task_js(form_id, calculate_name, title, form_types, hidden_names, df_survey, repalce_dots=False, task_title="'id: '+getField(report, 'g_registration.p_id')+'; age: '+getField(report, 'p_age')+getField(report, 'g_registration.p_gender')+' months; '+getField(report, 'p_weight') + 'kg; ' + getField(report, 'g_fever.p_temp')+'°'"):
+            line = task_string_template.format(variableName=s, full_path=chf_clean_name(s))
+        task_strings[s] = line
+    return list(task_strings.values())
+
+
+def get_task_js(
+    form_id,
+    calculate_name,
+    title,
+    form_types,
+    hidden_names,
+    df_survey,
+    repalce_dots=False,
+    task_title="id: '+getField(report, 'g_registration.p_id')+';age: '+getField(report, 'p_age')+getField(report, 'g_registration.p_gender')+' months; '+getField(report, 'p_weight') + 'kg; ' + getField(report, 'g_fever.p_temp')+'°'",  # noqa: E501
+):
     task_name = f"{form_id}"
     task_name_upper = task_name.upper()
 
-    
     return f"""
 /* eslint-disable no-use-before-define */
 /* eslint-disable */
@@ -185,7 +188,7 @@ const {{injectDataFromForm, isFormArrayHasSourceId}} = require('./stph-extras');
 const {{getField}} = require("./nools-extras");
 
 const CASE_DATA = ['{"','".join(hidden_names)}'];
-    
+
 
 const {task_name_upper}_FORMS = ['{"','".join(form_types)}'];
 
@@ -195,7 +198,7 @@ const {task_name_upper}_TASK_FORM = '{form_id}';
 
 const {task_name}Content =  function (content, contact, report){{
 
-  injectDataFromForm(content, '', CASE_DATA, {task_name_upper}_FORMS, [report], {'true' if repalce_dots else  'false'});
+  injectDataFromForm(content, '', CASE_DATA, {task_name_upper}_FORMS, [report], {'true' if repalce_dots else 'false'});
   content['patient_id'] = report.contact._id;
   content['source_id'] = report._id;
   console.log(content);
@@ -230,7 +233,7 @@ module.exports = {{
   {task_name}ResolveIf,
   {task_name}AppliesIf,
 }}
-// 
+//
 //// to be copied in task
 //
 //const {{
@@ -238,7 +241,7 @@ module.exports = {{
 //  {task_name_upper}_FORMS,
 //  {task_name}Content,
 //  {task_name}ContactLabel,
-//  {task_name}ResolveIf, 
+//  {task_name}ResolveIf,
 //  {task_name}AppliesIf, }} = require('./{task_name}');
 //
 //module.exports = [
@@ -270,4 +273,3 @@ module.exports = {{
 //    }}
 //];
 """
-

{tricc_oo-1.5.22.dist-info → tricc_oo-1.5.23.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: tricc-oo
-Version: 1.5.22
+Version: 1.5.23
 Summary: Python library that converts CDSS L2 in L3
 Project-URL: Homepage, https://github.com/SwissTPH/tricc
 Project-URL: Issues, https://github.com/SwissTPH/tricc/issues
@@ -9,6 +9,7 @@ Classifier: Programming Language :: Python :: 3
 Classifier: Operating System :: OS Independent
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
+License-File: LICENSE
 Requires-Dist: lxml
 Requires-Dist: markdownify
 Requires-Dist: pydantic
@@ -23,6 +24,7 @@ Requires-Dist: antlr4-python3-runtime==4.13.2
 Requires-Dist: antlr4-tools==0.2.1
 Requires-Dist: beautifulsoup4
 Requires-Dist: ocldev
+Dynamic: license-file
 
 # design  rules tricc_oo
 

tricc_oo-1.5.23.dist-info/RECORD

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