treesak 1.51.2__py3-none-any.whl

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Files changed (125) hide show
  1. TreeSAK/ALE.py +63 -0
  2. TreeSAK/ALE1.py +268 -0
  3. TreeSAK/ALE2.py +168 -0
  4. TreeSAK/ALE2RTC.py +30 -0
  5. TreeSAK/ALE3.py +205 -0
  6. TreeSAK/ALE4.py +636 -0
  7. TreeSAK/ALE5.py +210 -0
  8. TreeSAK/ALE6.py +401 -0
  9. TreeSAK/ALE7.py +126 -0
  10. TreeSAK/ALE_backup.py +1081 -0
  11. TreeSAK/AssessCVG.py +128 -0
  12. TreeSAK/AssessMarker.py +306 -0
  13. TreeSAK/AssessMarkerDeltaLL.py +257 -0
  14. TreeSAK/AssessMarkerPA.py +317 -0
  15. TreeSAK/AssessPB.py +130 -0
  16. TreeSAK/BMGE.jar +0 -0
  17. TreeSAK/BMGE.py +49 -0
  18. TreeSAK/CompareMCMC.py +138 -0
  19. TreeSAK/ConcateMSA.py +111 -0
  20. TreeSAK/ConvertMSA.py +135 -0
  21. TreeSAK/Dir.rb +82 -0
  22. TreeSAK/ExtractMarkerSeq.py +263 -0
  23. TreeSAK/FastRoot.py +1175 -0
  24. TreeSAK/FastRoot_backup.py +1122 -0
  25. TreeSAK/FigTree.py +34 -0
  26. TreeSAK/GTDB_tree.py +76 -0
  27. TreeSAK/GeneTree.py +142 -0
  28. TreeSAK/KEGG_Luo17.py +807 -0
  29. TreeSAK/LcaToLeaves.py +66 -0
  30. TreeSAK/MarkerRef2Tree.py +616 -0
  31. TreeSAK/MarkerRef2Tree_backup.py +628 -0
  32. TreeSAK/MarkerSeq2Tree.py +290 -0
  33. TreeSAK/MarkerSeq2Tree_backup.py +259 -0
  34. TreeSAK/ModifyTopo.py +116 -0
  35. TreeSAK/Newick_tree_plotter.py +79 -0
  36. TreeSAK/OMA.py +170 -0
  37. TreeSAK/OMA2.py +212 -0
  38. TreeSAK/OneLineAln.py +50 -0
  39. TreeSAK/PB.py +155 -0
  40. TreeSAK/PMSF.py +106 -0
  41. TreeSAK/PhyloBiAssoc.R +84 -0
  42. TreeSAK/PhyloBiAssoc.py +167 -0
  43. TreeSAK/PlotMCMC.py +41 -0
  44. TreeSAK/PlotMcmcNode.py +152 -0
  45. TreeSAK/PlotMcmcNode_old.py +252 -0
  46. TreeSAK/RootTree.py +101 -0
  47. TreeSAK/RootTreeGTDB214.py +288 -0
  48. TreeSAK/RootTreeGTDB220.py +300 -0
  49. TreeSAK/RootTreeGTDB226.py +300 -0
  50. TreeSAK/SequentialDating.py +16 -0
  51. TreeSAK/SingleAleHGT.py +157 -0
  52. TreeSAK/SingleLinePhy.py +50 -0
  53. TreeSAK/SliceMSA.py +142 -0
  54. TreeSAK/SplitScore.py +19 -0
  55. TreeSAK/SplitScore1.py +178 -0
  56. TreeSAK/SplitScore1OMA.py +148 -0
  57. TreeSAK/SplitScore2.py +597 -0
  58. TreeSAK/TaxaCountStats.R +256 -0
  59. TreeSAK/TaxonTree.py +47 -0
  60. TreeSAK/TreeSAK_config.py +32 -0
  61. TreeSAK/VERSION +158 -0
  62. TreeSAK/VisHPD95.R +45 -0
  63. TreeSAK/VisHPD95.py +200 -0
  64. TreeSAK/__init__.py +0 -0
  65. TreeSAK/ale_parser.py +74 -0
  66. TreeSAK/ale_splitter.py +63 -0
  67. TreeSAK/alignment_pruner.pl +1471 -0
  68. TreeSAK/assessOG.py +45 -0
  69. TreeSAK/catfasta2phy.py +140 -0
  70. TreeSAK/cogTree.py +185 -0
  71. TreeSAK/compare_trees.R +30 -0
  72. TreeSAK/compare_trees.py +255 -0
  73. TreeSAK/dating.py +264 -0
  74. TreeSAK/dating_ss.py +361 -0
  75. TreeSAK/deltall.py +82 -0
  76. TreeSAK/do_rrtc.rb +464 -0
  77. TreeSAK/fa2phy.py +42 -0
  78. TreeSAK/format_leaf_name.py +70 -0
  79. TreeSAK/gap_stats.py +38 -0
  80. TreeSAK/get_SCG_tree.py +742 -0
  81. TreeSAK/get_arCOG_seq.py +97 -0
  82. TreeSAK/global_functions.py +222 -0
  83. TreeSAK/gnm_leaves.py +43 -0
  84. TreeSAK/iTOL.py +791 -0
  85. TreeSAK/iTOL_gene_tree.py +80 -0
  86. TreeSAK/itol_msa_stats.py +56 -0
  87. TreeSAK/keep_highest_rrtc.py +37 -0
  88. TreeSAK/koTree.py +194 -0
  89. TreeSAK/label_tree.R +75 -0
  90. TreeSAK/label_tree.py +121 -0
  91. TreeSAK/mad.py +708 -0
  92. TreeSAK/mcmc2tree.py +58 -0
  93. TreeSAK/mcmcTC copy.py +92 -0
  94. TreeSAK/mcmcTC.py +104 -0
  95. TreeSAK/mcmctree_vs_reltime.R +44 -0
  96. TreeSAK/mcmctree_vs_reltime.py +252 -0
  97. TreeSAK/merge_pdf.py +32 -0
  98. TreeSAK/pRTC.py +56 -0
  99. TreeSAK/parse_mcmctree.py +198 -0
  100. TreeSAK/parse_reltime.py +141 -0
  101. TreeSAK/phy2fa.py +37 -0
  102. TreeSAK/plot_distruibution_th.py +165 -0
  103. TreeSAK/prep_mcmctree_ctl.py +92 -0
  104. TreeSAK/print_leaves.py +32 -0
  105. TreeSAK/pruneMSA.py +63 -0
  106. TreeSAK/recode.py +73 -0
  107. TreeSAK/remove_bias.R +112 -0
  108. TreeSAK/rename_leaves.py +77 -0
  109. TreeSAK/replace_clade.py +55 -0
  110. TreeSAK/root_with_out_group.py +84 -0
  111. TreeSAK/run_TaxaCountStats_R_s1.py +455 -0
  112. TreeSAK/subsample_drep_gnms.py +74 -0
  113. TreeSAK/subset.py +69 -0
  114. TreeSAK/subset_tree_stupid_old_way.py +193 -0
  115. TreeSAK/supertree.py +330 -0
  116. TreeSAK/tmp_1.py +19 -0
  117. TreeSAK/tmp_2.py +19 -0
  118. TreeSAK/tmp_3.py +120 -0
  119. TreeSAK/weighted_rand.rb +23 -0
  120. treesak-1.51.2.data/scripts/TreeSAK +950 -0
  121. treesak-1.51.2.dist-info/LICENSE +674 -0
  122. treesak-1.51.2.dist-info/METADATA +27 -0
  123. treesak-1.51.2.dist-info/RECORD +125 -0
  124. treesak-1.51.2.dist-info/WHEEL +5 -0
  125. treesak-1.51.2.dist-info/top_level.txt +1 -0
treesak-1.51.2.dist-info/METADATA ADDED
@@ -0,0 +1,27 @@
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+ Metadata-Version: 2.1
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+ Name: treesak
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+ Version: 1.51.2
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+ Summary: BioSAK
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+ Home-page: https://github.com/songweizhi/TreeSAK
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+ Author: Weizhi Song
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+ Author-email: songwz03@gmail.com
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+ License: GPL3+
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+ Keywords: Bioinformatics
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+ License-File: LICENSE
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+ Requires-Dist: biopython
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+ Requires-Dist: matplotlib
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+ Requires-Dist: numpy
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+ Requires-Dist: scipy
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+ Requires-Dist: itolapi
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+ Requires-Dist: networkx
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+ Requires-Dist: seaborn
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+ Requires-Dist: lxml
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+ Requires-Dist: beautifulsoup4
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+ Requires-Dist: ete3
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+ Requires-Dist: arviz
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+ Requires-Dist: plotly
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+ Requires-Dist: kaleido
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+ Requires-Dist: PyPDF3
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+ Requires-Dist: dendropy
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+
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+ TreeSAK v1.51.2
treesak-1.51.2.dist-info/RECORD ADDED
@@ -0,0 +1,125 @@
1
+ TreeSAK/ALE.py,sha256=Gv5BxwLR6-t0uz6TcKIgQB6wFDB6jlOntBV_0h7tKPU,4499
2
+ TreeSAK/ALE1.py,sha256=gkrO88QP5h2WYyuaFWh66Cr7IEuASqdaVEGwLGn23SM,12426
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+ TreeSAK/ALE2.py,sha256=WNpYgGJQCWWP2CLLMJ6UeuX9E5SmXtqtpcBg5mbvEjI,7109
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+ TreeSAK/ALE2RTC.py,sha256=qeXHQFdg9Bv26ZahTMxsbBaLIhxg_-ueWCAPvrvvbQY,779
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+ TreeSAK/ALE3.py,sha256=ngSmKqPfuWqe0fPOYZleOAUoOmGuwNygT4ABnU6L7dM,8763
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+ TreeSAK/ALE4.py,sha256=xtIqxPRyBYYa7WDjaq07XPnCM3SVj9--vn6ZYsNileY,33507
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+ TreeSAK/ALE5.py,sha256=IEK8fxYFARbTIo4G57vn6uM_swDaUlZ-1365a4XQRPQ,8361
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+ TreeSAK/ALE6.py,sha256=HCk0KFUEeTVdnO0FHYstpGrHFBi8fh7fI6TJuTcNxrk,18775
9
+ TreeSAK/ALE7.py,sha256=w3ju99fleKKDEISpO_AlOMyXkBLIJzH2BTDnvDdDQO0,4997
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+ TreeSAK/ALE_backup.py,sha256=FU6SiPgvlsyaxH5Oc77tMqiCHWde25iJGDFKbBPVxz8,56120
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+ TreeSAK/AssessCVG.py,sha256=jMI59pFFDAJ-1pbcq_-ygpy-3EobS6E1_DcLEpypFro,4893
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+ TreeSAK/AssessMarker.py,sha256=QT2WTzTzWPO8YLjab2TA2Qce4WdzzUjoVTrDkEIdiCY,15774
13
+ TreeSAK/AssessMarkerDeltaLL.py,sha256=SYOK0cql1d5275G4QX1KhvdUR3orXYRvJZJchb1sFx8,12086
14
+ TreeSAK/AssessMarkerPA.py,sha256=1B6Qp-gB1j4Aqiy980O8q_tdjFogSivS_FyJNnXUxvk,15180
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+ TreeSAK/AssessPB.py,sha256=JG7mu0crtGt3B4_1ctzi7r60iWr2_hqnTzL7EJNRuAQ,5481
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+ TreeSAK/BMGE.jar,sha256=iF4oq7nKklc9EYJP0KQkcc9huf7hOVk2wDnEqRhlTKw,105670
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+ TreeSAK/BMGE.py,sha256=LBKGKz_L45JTGPMT5Y-s9SMNCrmCd4oLm2KGK2VfJqo,1550
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+ TreeSAK/CompareMCMC.py,sha256=Al8-zPmDxY_Hm0SWiHU8Ik-eypGcJiwZyHZFB5yb8F0,5287
19
+ TreeSAK/ConcateMSA.py,sha256=4CFLSaLpmmyKk9OCYKjXiMzJfE66-WEs0zLYGHx3R44,4126
20
+ TreeSAK/ConvertMSA.py,sha256=DTbEGoA0y1xeMdfkigXMp6zasQNkwolS9_IrGfntFVI,5871
21
+ TreeSAK/Dir.rb,sha256=sTtyfFK9HXTmkUP5DklthCuvEdtYr_-AbubYBwZ82Rk,1862
22
+ TreeSAK/ExtractMarkerSeq.py,sha256=0i8grE7akeU8CO-cmb1Ivxf0mxxapeDfizLRaiIX5Jg,11988
23
+ TreeSAK/FastRoot.py,sha256=tR1d9jEP-yUGN4VlooBeO4SjY5E2yvIaQliZS6jMIjs,45554
24
+ TreeSAK/FastRoot_backup.py,sha256=REYWct6FtmJUJVzSinUn8COMqyUivmYoGx9PkF--lEE,43646
25
+ TreeSAK/FigTree.py,sha256=7WC-hfOZY6P7zfzNZzxoQ0Be_4UR2b3GR_L4w1NxNC8,1153
26
+ TreeSAK/GTDB_tree.py,sha256=A3WGZ8X04QCbStbqZ_a-_h8JdEKPm9GiBSPyzPTsePE,3848
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+ TreeSAK/GeneTree.py,sha256=kXZf-54X4ejTaRBumP3WOWi9cXvEZILR7W-umSMpUrI,5356
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+ TreeSAK/KEGG_Luo17.py,sha256=lUdQ6TxtbEtHgGrTAlvblz5ytMJO642HR3iDzxJOhMg,44627
29
+ TreeSAK/LcaToLeaves.py,sha256=d_qP116AzUDtpfrGg-ZhYExF-o4GRVrBvs67bQ1kdWs,2236
30
+ TreeSAK/MarkerRef2Tree.py,sha256=u0KWqD9s0vIf4F1ZbqjQPUsbcEu6Xu6gUrnnp6paDhY,28454
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+ TreeSAK/MarkerRef2Tree_backup.py,sha256=BLhPLd2V1SdfwkdLaF-hMekiRgFJixRKojwIsozmQ1o,31526
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+ TreeSAK/MarkerSeq2Tree.py,sha256=Jn6IrZAHHkQ8CLasXTa7ucLmAUIAO_2Xb2FVo5G9oeg,12836
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+ TreeSAK/MarkerSeq2Tree_backup.py,sha256=XR4XP6v1nntyEAWNM3qefLPtiYfzi7zspr6XY2lF1Aw,10980
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+ TreeSAK/ModifyTopo.py,sha256=HzXrz8EqewmQLajLnNXlGNj32GMwWdAwRIntyOSr2a8,3939
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+ TreeSAK/Newick_tree_plotter.py,sha256=PSx2ywJ3wOE_7Di9_VQDsteOt6bu2-1_YMVDCOmkiNs,3713
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+ TreeSAK/OMA.py,sha256=X404rVJ5tZCrnp2G1d41C00sYXLAn07xMqC9KD-qeAA,5981
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+ TreeSAK/OMA2.py,sha256=gX47w4Lzk2MaWiI2mf_u3Mmkyb3c7arBzeBOT11d8fM,8388
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+ TreeSAK/OneLineAln.py,sha256=Odo-gVxa6zvhZB-0QzOKg3oG90NiYdmkI0Lp2Wcc73E,1679
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+ TreeSAK/PB.py,sha256=urPYxUuFa3dFArLaDSbcZVLvmAES-3Ho6k9lExT55iU,6826
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+ TreeSAK/PMSF.py,sha256=OifLvcMwm30Knnk40bgm92rBBMdzOy0f2kAjrX76k3Y,4627
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+ TreeSAK/PhyloBiAssoc.R,sha256=QQOqXaySFwmD0x0kQ0-1OHRaKvY2VCXssIgyMn0YXq8,3080
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+ TreeSAK/PhyloBiAssoc.py,sha256=9svrQRBiMYFxbdO44967rD2-B97JROMfE44Y6_QpSh4,6917
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+ TreeSAK/PlotMCMC.py,sha256=4n8w4_sEMOxgpYHsbX2FO4PK2KMp58wmQaAjI0tzYpI,1292
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+ TreeSAK/PlotMcmcNode.py,sha256=Emb3BaXdNJf3Rlj5rgozy5mGJ-kOG08fjztt4aQIiy0,5139
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+ TreeSAK/PlotMcmcNode_old.py,sha256=KLqqcRrVIIljuDB4mXAgHNgZR_rGnjU6g5U8_P9uYEQ,9026
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+ TreeSAK/RootTree.py,sha256=R4ij_DRGEE-zcOnlzPvkkaff4Btyjj_lyoam-Qt6LB0,4178
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+ TreeSAK/RootTreeGTDB214.py,sha256=IYn7ceFEwH5HXFQam_-qHvwqLMg5iiTI5oChjsfjgSQ,11761
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+ TreeSAK/RootTreeGTDB220.py,sha256=Msa8oRAgXftY7_aq7nFmriPPl63bSGsAZqiq13Fxawc,12758
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+ TreeSAK/RootTreeGTDB226.py,sha256=uu07z8-5ey1Tcnxy1zci8laEcPXQ9CeF2gJHtI7TR7E,12758
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+ TreeSAK/SequentialDating.py,sha256=8irBgNH9Tj_3TK5ApwUyzaeQVusmFQrRvRFud7HD1EY,289
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+ TreeSAK/SingleAleHGT.py,sha256=4YSuSnYgSxdYWKEPnsZ1lRvfYmWVT9JmIILpGPdpkG0,9164
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+ TreeSAK/SingleLinePhy.py,sha256=CsW8eDhO2-4sUBYfpPDvI8qrMxI4vFn83lDr7Hl7MmY,1418
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+ TreeSAK/SliceMSA.py,sha256=qaFbV54csd946WO7w96VYSssqGH0EfbmGX01RMf12VE,5660
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+ TreeSAK/SplitScore.py,sha256=xCNyXRZ-_e8LlglQR5x2JnP59T7FUyCBY36J8MgChYU,925
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+ TreeSAK/SplitScore1.py,sha256=A9h53ex8OPKxUmDzrKFt71rPOcQuCll4GBS1Sr0s1Mo,7698
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+ TreeSAK/SplitScore1OMA.py,sha256=iyoIGCieen0IZYiNNoPZailyRzRwU4exX1cSAl6-Ako,7225
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+ TreeSAK/SplitScore2.py,sha256=nqeWAg5R77aTi956dR27yueV6W6mPcYYDv8Cy9tI2iw,27865
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+ TreeSAK/TaxaCountStats.R,sha256=ICZ4k7zwQbXNr8SY0t7Ku5TvtzZbUupXhyMvkYRvpek,13027
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+ TreeSAK/TaxonTree.py,sha256=uihyjlHeFdAr8uHpfnHaURBwDO79zr0iasCwaX-rFz8,1540
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+ TreeSAK/TreeSAK_config.py,sha256=lclcRmKDFZlLCCNWoXiqHxAmQdz-nGfpw9EkgDmM0s8,2030
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+ TreeSAK/VERSION,sha256=GgPUXfGYRTZqWZNZX_l7KJKoTsjRsDr4RqqLMwdI3G4,2079
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+ TreeSAK/VisHPD95.R,sha256=ant381eB_NwHae155BAOyuBEMvQekXBOwm186QoAHsY,2593
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+ TreeSAK/VisHPD95.py,sha256=lCITnoaD_ZMrmXVWjrKTskB2MZAoJj3CW55llmSpeS4,7566
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+ TreeSAK/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ TreeSAK/ale_parser.py,sha256=liXahFch_0gGMj8Ja7MzoRnOv3-hWEgxpB0QbHzjPcE,2672
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+ TreeSAK/ale_splitter.py,sha256=_XaTxdsiiKoXOLR_H9xRuNi-jY26xJ_nxARnu1wvfcY,2493
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+ TreeSAK/alignment_pruner.pl,sha256=lO5eO8vPsZ-bVGnbWS6yDB4_kvrgdO9YT6XnloQpgGQ,40925
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+ TreeSAK/assessOG.py,sha256=Kbc1izl3tl1mvuhSWkdbfFEjEjWUJXMlXvpqpBVsgRk,1341
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+ TreeSAK/catfasta2phy.py,sha256=7kcRUaFXa8DYDynK3Dc6tDjEbgK6eOIdoOtI2LB_A9A,5472
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+ TreeSAK/cogTree.py,sha256=U2HVaTZnDgZkJ82OwMobrvfcXmtyF6Y-lhJnnULB04I,8039
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+ TreeSAK/compare_trees.R,sha256=Zs7LJO9NY1g9ovuj2sI8IvDMQTyXQxkX_X2o5RqMu4w,1076
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+ TreeSAK/compare_trees.py,sha256=x5wUX_5F4hKLB7RbxCj5C44oAAUQ8BqKaL8Oj_qaeJU,10641
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+ TreeSAK/dating.py,sha256=yxnICZjpExeGne25COF5G9r6sTqDQb5re5pmQ1IiIu4,13132
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+ TreeSAK/dating_ss.py,sha256=QsfUJPCXn1z_BS5MzLWfj_RDmpsf5y9v9eclbUZa3ck,21377
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+ TreeSAK/deltall.py,sha256=_smZSb699Wb2pZkPQOIm_CGz7kDUuWcFh3qBDorEByc,3294
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+ TreeSAK/do_rrtc.rb,sha256=X1kycUd8_nkaT39cvZzUomAqTg3lDgekfYyyRAFtknA,12753
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+ TreeSAK/fa2phy.py,sha256=pHB8k4tj4-dGWNdkmuF6exPYF111OM2_psgTqjP_67A,1196
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+ TreeSAK/format_leaf_name.py,sha256=Zxxyy0GC8mcNHMHzG_PAU76Ae7F3r3NV4YoD-YoFvlw,2861
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+ TreeSAK/gap_stats.py,sha256=g7TJ3z62iMc-8-n3nU68wol02qbIrYzqU5BMml3zRt0,941
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+ TreeSAK/get_SCG_tree.py,sha256=BeGk9Lyi4-3k3QJsk6uAduKbPPGSrfGNUPz8zPZkhlA,29246
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+ TreeSAK/get_arCOG_seq.py,sha256=4x-UjJ-K4tBWkEqfnWCorL4A1F6RnrUqB2QC2ESJYDA,3542
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+ TreeSAK/global_functions.py,sha256=dYXCZfnZOJaM-1AR9mykyPsou8QYFZbAhGcd6CYVCzI,7245
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+ TreeSAK/gnm_leaves.py,sha256=hHxJ28SRFLz6Fp33Vam2fTLNJuX7Cn-AAlLY0anlPvo,1190
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+ TreeSAK/iTOL.py,sha256=tapnc7SxOEHeWmKV3koGOrLGAxUxWvYviIZwCY7KuOo,39777
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+ TreeSAK/iTOL_gene_tree.py,sha256=91inoSlMlcbZ49wiZs6BI3tgyYPoG6lGY_pa9_UfiNY,2932
86
+ TreeSAK/itol_msa_stats.py,sha256=nwl0U8ztXoAR_HKGhF9AD-XPwwTTgkv4NQxFbm2Lt3s,1668
87
+ TreeSAK/keep_highest_rrtc.py,sha256=787d4hbYc0-TwOFCsnUaCiJOlG4y-HHT2VogqmF4USY,1350
88
+ TreeSAK/koTree.py,sha256=BK-uxN-vi29bFVKhKGeZRZnPi-k8J6Nz5bgoHetvX5s,8388
89
+ TreeSAK/label_tree.R,sha256=_j8OjyQBF-CJEpq0toTZoKdjemDXrKA_XBBcH1hgY8Y,2772
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+ TreeSAK/label_tree.py,sha256=YDn0Yg_BV0pVnJH30kI37fDsVfrfwE9n6440UDvAlyw,4788
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+ TreeSAK/mad.py,sha256=-ca9egSKVwx5piK-r9EnI7LWJ4nXqxgJqnsJqmK6xJM,28389
92
+ TreeSAK/mcmc2tree.py,sha256=AdOgsKRyyV5O_nqK3UNKHaHdvgy_q2_vllghSLDZAkE,1668
93
+ TreeSAK/mcmcTC copy.py,sha256=yYnPFaLLM8fqC546HBHc8Giekwed_9SoqPBLuoT_Vpk,3488
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+ TreeSAK/mcmcTC.py,sha256=i8fQb9z0nzszxbJu2E1lmD3hsF2duZfu7xP-LBaEQ04,4107
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+ TreeSAK/mcmctree_vs_reltime.R,sha256=ouf27T5RU6rTotb0-70MXSY_sQCm1ZRCrgLrojLcBSE,2399
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+ TreeSAK/mcmctree_vs_reltime.py,sha256=u7cKLYfZo8iN9kxIzLgmejQ76LkeGymjNWl7I7PSnlA,9514
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+ TreeSAK/prep_mcmctree_ctl.py,sha256=a_EhMYIaeSRxjLhr2WjYPOrFUO-K2-U6jbGW-NAZb1g,4871
104
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105
+ TreeSAK/pruneMSA.py,sha256=fc_Zq4tGilxb_xCaFJX_coEspIN5nDJwlRqYOLcI4Ok,2075
106
+ TreeSAK/recode.py,sha256=0x_sS4B6_ycIkCXf7b-1O6ROn2yGB7jTUdLxLE-Mksc,3188
107
+ TreeSAK/remove_bias.R,sha256=P27oZf_Q6fTcstE5dZWxg9rc2mfoCOYZhpqMfhJi3eg,4446
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+ TreeSAK/rename_leaves.py,sha256=12i6CJvLa2QRPec3zfZKXPpjVvCPHgtXHZ7TSL1dbzY,2535
109
+ TreeSAK/replace_clade.py,sha256=uUXT427-jovllX1VOX3NW4H8Ina3-SUD605t0ZAiP_g,1756
110
+ TreeSAK/root_with_out_group.py,sha256=hjYATuptjAz0xnZF1TSYWQbrZ6A1kT-jOS3Gcro3oLg,2424
111
+ TreeSAK/run_TaxaCountStats_R_s1.py,sha256=t7TOyOrCJ__I6rlbZxP0Wms--9f87Qn8uBEmrSc9Tng,22257
112
+ TreeSAK/subsample_drep_gnms.py,sha256=yvJrg5u4FQWAKzqbqS2Z7O_wC67Nf1RBaBo-YeooMLE,2949
113
+ TreeSAK/subset.py,sha256=R43-B2ltgK6ZNoG4X8M_Mm-kGWefHE8F0jEbvw1nndw,2437
114
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115
+ TreeSAK/supertree.py,sha256=Kv_SzQ29r3GGg9C5NRJ5Jg1mXOMWOBH4WL1M2_V4FRY,14130
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+ TreeSAK/tmp_1.py,sha256=adeuiVaraf8UNUlhOwGnogqmsY0GN0k4vp5moAzh23g,762
117
+ TreeSAK/tmp_2.py,sha256=aMJmbq36deP_9lXLDSCJNMkXT6TA-dmRqMM5jlyd544,867
118
+ TreeSAK/tmp_3.py,sha256=0DSb5ctmLp7q_Fr3azRugnwp9mcz-yAJlQ252P6EYKo,4295
119
+ TreeSAK/weighted_rand.rb,sha256=VCiHVi21cs-KHNpvG2imJVJi7bZA_5aziGlkB1hQyh8,1038
120
+ treesak-1.51.2.data/scripts/TreeSAK,sha256=WeoHkH7_Sx1bsBX2E58rGk8xekRs3LeCvdUWJVMAid0,72747
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+ treesak-1.51.2.dist-info/LICENSE,sha256=WJ7YI-moTFb-uVrFjnzzhGJrnL9P2iqQe8NuED3hutI,35141
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+ treesak-1.51.2.dist-info/METADATA,sha256=hGijdTfkKnAFAwvbAQuzwQ2dmaAFNlGvbpjUGEw4cKU,596
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124
+ treesak-1.51.2.dist-info/top_level.txt,sha256=-Xs1fwP8EpQBEdaqpMsycr--jslfTy2uB5RsHLVaAMk,8
125
+ treesak-1.51.2.dist-info/RECORD,,
treesak-1.51.2.dist-info/WHEEL ADDED
@@ -0,0 +1,5 @@
1
+ Wheel-Version: 1.0
2
+ Generator: bdist_wheel (0.42.0)
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
5
+
treesak-1.51.2.dist-info/top_level.txt ADDED
@@ -0,0 +1 @@
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+ TreeSAK