tooluniverse 1.0.7__py3-none-any.whl → 1.0.9__py3-none-any.whl
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- tooluniverse/__init__.py +37 -14
- tooluniverse/admetai_tool.py +16 -5
- tooluniverse/base_tool.py +36 -0
- tooluniverse/biogrid_tool.py +118 -0
- tooluniverse/build_optimizer.py +87 -0
- tooluniverse/cache/__init__.py +3 -0
- tooluniverse/cache/memory_cache.py +99 -0
- tooluniverse/cache/result_cache_manager.py +235 -0
- tooluniverse/cache/sqlite_backend.py +257 -0
- tooluniverse/clinvar_tool.py +90 -0
- tooluniverse/compose_scripts/output_summarizer.py +87 -33
- tooluniverse/compose_tool.py +2 -2
- tooluniverse/custom_tool.py +28 -0
- tooluniverse/data/adverse_event_tools.json +97 -98
- tooluniverse/data/agentic_tools.json +81 -162
- tooluniverse/data/arxiv_tools.json +1 -4
- tooluniverse/data/compose_tools.json +0 -54
- tooluniverse/data/core_tools.json +1 -4
- tooluniverse/data/dataset_tools.json +7 -7
- tooluniverse/data/doaj_tools.json +1 -3
- tooluniverse/data/drug_discovery_agents.json +282 -0
- tooluniverse/data/europe_pmc_tools.json +1 -2
- tooluniverse/data/genomics_tools.json +174 -0
- tooluniverse/data/geo_tools.json +86 -0
- tooluniverse/data/literature_search_tools.json +15 -35
- tooluniverse/data/markitdown_tools.json +51 -0
- tooluniverse/data/monarch_tools.json +1 -2
- tooluniverse/data/openalex_tools.json +1 -5
- tooluniverse/data/opentarget_tools.json +8 -16
- tooluniverse/data/output_summarization_tools.json +23 -20
- tooluniverse/data/packages/bioinformatics_core_tools.json +2 -2
- tooluniverse/data/packages/cheminformatics_tools.json +1 -1
- tooluniverse/data/packages/genomics_tools.json +1 -1
- tooluniverse/data/packages/single_cell_tools.json +1 -1
- tooluniverse/data/packages/structural_biology_tools.json +1 -1
- tooluniverse/data/pmc_tools.json +1 -4
- tooluniverse/data/ppi_tools.json +139 -0
- tooluniverse/data/pubmed_tools.json +1 -3
- tooluniverse/data/semantic_scholar_tools.json +1 -2
- tooluniverse/data/tool_composition_tools.json +2 -4
- tooluniverse/data/unified_guideline_tools.json +206 -4
- tooluniverse/data/xml_tools.json +15 -15
- tooluniverse/data/zenodo_tools.json +1 -2
- tooluniverse/dbsnp_tool.py +71 -0
- tooluniverse/default_config.py +6 -0
- tooluniverse/ensembl_tool.py +61 -0
- tooluniverse/execute_function.py +235 -76
- tooluniverse/generate_tools.py +303 -20
- tooluniverse/genomics_gene_search_tool.py +56 -0
- tooluniverse/geo_tool.py +116 -0
- tooluniverse/gnomad_tool.py +63 -0
- tooluniverse/logging_config.py +64 -2
- tooluniverse/markitdown_tool.py +159 -0
- tooluniverse/mcp_client_tool.py +10 -5
- tooluniverse/molecule_2d_tool.py +9 -3
- tooluniverse/molecule_3d_tool.py +9 -3
- tooluniverse/output_hook.py +217 -150
- tooluniverse/smcp.py +18 -10
- tooluniverse/smcp_server.py +89 -199
- tooluniverse/string_tool.py +112 -0
- tooluniverse/tools/{MultiAgentLiteratureSearch.py → ADMETAnalyzerAgent.py} +18 -18
- tooluniverse/tools/ArXiv_search_papers.py +3 -3
- tooluniverse/tools/CMA_Guidelines_Search.py +52 -0
- tooluniverse/tools/CORE_search_papers.py +3 -3
- tooluniverse/tools/ClinVar_search_variants.py +52 -0
- tooluniverse/tools/ClinicalTrialDesignAgent.py +63 -0
- tooluniverse/tools/CompoundDiscoveryAgent.py +59 -0
- tooluniverse/tools/DOAJ_search_articles.py +2 -2
- tooluniverse/tools/DiseaseAnalyzerAgent.py +52 -0
- tooluniverse/tools/DrugInteractionAnalyzerAgent.py +52 -0
- tooluniverse/tools/DrugOptimizationAgent.py +63 -0
- tooluniverse/tools/Ensembl_lookup_gene_by_symbol.py +52 -0
- tooluniverse/tools/EuropePMC_search_articles.py +1 -1
- tooluniverse/tools/GIN_Guidelines_Search.py +52 -0
- tooluniverse/tools/GWAS_search_associations_by_gene.py +52 -0
- tooluniverse/tools/LiteratureSynthesisAgent.py +59 -0
- tooluniverse/tools/PMC_search_papers.py +3 -3
- tooluniverse/tools/PubMed_search_articles.py +2 -2
- tooluniverse/tools/SemanticScholar_search_papers.py +1 -1
- tooluniverse/tools/UCSC_get_genes_by_region.py +67 -0
- tooluniverse/tools/Zenodo_search_records.py +1 -1
- tooluniverse/tools/__init__.py +33 -3
- tooluniverse/tools/convert_to_markdown.py +59 -0
- tooluniverse/tools/dbSNP_get_variant_by_rsid.py +46 -0
- tooluniverse/tools/gnomAD_query_variant.py +52 -0
- tooluniverse/tools/openalex_literature_search.py +4 -4
- tooluniverse/ucsc_tool.py +60 -0
- tooluniverse/unified_guideline_tools.py +1175 -57
- tooluniverse/utils.py +51 -4
- tooluniverse/zenodo_tool.py +2 -1
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/METADATA +10 -3
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/RECORD +96 -61
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/entry_points.txt +0 -3
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/WHEEL +0 -0
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/licenses/LICENSE +0 -0
- {tooluniverse-1.0.7.dist-info → tooluniverse-1.0.9.dist-info}/top_level.txt +0 -0
tooluniverse/utils.py
CHANGED
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@@ -4,6 +4,7 @@ import re
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import hashlib
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import os
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import time
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import sys
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from typing import Dict, Any, Union, List
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from huggingface_hub import hf_hub_download
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from pydantic._internal._model_construction import ModelMetaclass
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relative_local_path = hf_parameters.get("save_to_local_dir")
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# Compute absolute path to save locally
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project_root = os.path.dirname(os.path.dirname(os.path.dirname(__file__)))
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# If not provided, default to user cache directory under datasets
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is_missing_path = relative_local_path is None
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is_empty_string = (
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isinstance(relative_local_path, str) and relative_local_path.strip() == ""
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)
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if is_missing_path or is_empty_string:
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absolute_local_dir = os.path.join(get_user_cache_dir(), "datasets")
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else:
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# Expand '~' and environment variables
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expanded_path = os.path.expanduser(os.path.expandvars(relative_local_path))
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if os.path.isabs(expanded_path):
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absolute_local_dir = expanded_path
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else:
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absolute_local_dir = os.path.join(project_root, expanded_path)
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# Ensure the directory exists
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os.makedirs(absolute_local_dir, exist_ok=True)
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return md5_hash.hexdigest()
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def get_user_cache_dir() -> str:
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"""
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Return a cross-platform user cache directory for ToolUniverse.
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macOS: ~/Library/Caches/ToolUniverse
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Linux: $XDG_CACHE_HOME or ~/.cache/tooluniverse
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Windows: %LOCALAPPDATA%\\ToolUniverse\\Cache
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"""
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# Allow explicit override via environment variable
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override_dir = os.getenv("TOOLUNIVERSE_TMPDIR")
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if override_dir and override_dir.strip():
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return os.path.expanduser(os.path.expandvars(override_dir))
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platform = sys.platform
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home_dir = os.path.expanduser("~")
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if platform == "darwin":
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return os.path.join(home_dir, "Library", "Caches", "ToolUniverse")
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local_app_data = os.getenv("LOCALAPPDATA") or os.path.join(
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home_dir, "AppData", "Local"
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)
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return os.path.join(local_app_data, "ToolUniverse", "Cache")
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# Default: Linux/Unix
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xdg_cache = os.getenv("XDG_CACHE_HOME")
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if xdg_cache and xdg_cache.strip():
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return os.path.join(xdg_cache, "tooluniverse")
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return os.path.join(home_dir, ".cache", "tooluniverse")
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"""
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# Skip validation for special parameters that are handled internally
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if param == "_tooluniverse_stream":
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continue
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invalid_params.append(param)
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else:
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tooluniverse/zenodo_tool.py
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"size": max(1, min(max_results, 200)),
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}
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# Only add communities filter if community is provided and not empty
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Metadata-Version: 2.4
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Name: tooluniverse
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Version: 1.0.
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Version: 1.0.9
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Summary: A comprehensive collection of scientific tools for Agentic AI, offering integration with the ToolUniverse SDK and MCP Server to support advanced scientific workflows.
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Author-email: Shanghua Gao <shanghuagao@gmail.com>
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Project-URL: Homepage, https://github.com/mims-harvard/ToolUniverse
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Requires-Dist: setuptools>=70.0.0
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Provides-Extra: dev
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Requires-Dist: pytest-xdist>=3.0; extra == "dev"
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Requires-Dist: pytest-html>=3.0; extra == "dev"
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tooluniverse/__init__.py,sha256=
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tooluniverse/admetai_tool.py,sha256=
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tooluniverse/__init__.py,sha256=PvYhaTdU4pSC8V3DMzbybfkLSad2OkpQWgf74P-lfH8,17507
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tooluniverse/admetai_tool.py,sha256=xeYCpROq7oGjYrzKtDCHSN94sB5jVLuLSu3E_eT5Ko8,3470
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tooluniverse/agentic_tool.py,sha256=i0TEs6WhF21B4gs5k7DM67qTND4qDMPD2lUzLyEWnnM,25627
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tooluniverse/alphafold_tool.py,sha256=NkKQttC0MfuetCTTcWTFEG2MdhyKwy3jb5TR4odiqAw,4658
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tooluniverse/arxiv_tool.py,sha256=60e5moGt3XnwZeKx_nrvRZrwAavE11ok0j78AI5F6Xs,3610
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tooluniverse/base_tool.py,sha256=
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tooluniverse/base_tool.py,sha256=zagthjIceQN0F32pDhKE0uCqm9uqVEDG6OZgSIbNCRo,12479
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tooluniverse/biogrid_tool.py,sha256=tszza6Kf1-PKsoVw5GIqLak20FvhFY_PFSVY9XxDuIQ,4274
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tooluniverse/biorxiv_tool.py,sha256=uffhxXMOWR6b2jzxka-Qss1LjliQTuX-skIIc7RAaPs,4133
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tooluniverse/boltz_tool.py,sha256=Kfcymeu6FRRpWLw7dWhEON4PUBTsHuBiTAPJlYH5ZGs,7930
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tooluniverse/build_optimizer.py,sha256=UReMfhTGhGJqcEWdH6d5xfI-y3zJlaNfsei7qXxeCN0,2832
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tooluniverse/cellosaurus_tool.py,sha256=W_npl3ga45-Hpsdq7YyGsD5_DnR2AmyaQVYNjiZoNOs,47902
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tooluniverse/chem_tool.py,sha256=tJusjamWNp0x8Ke-cvVgKB7-clvD6LXTaXA0Q0fqQv4,8336
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tooluniverse/
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tooluniverse/clinvar_tool.py,sha256=2NKPKC3b3eBzuwK0yc65bzPuRF4I-Jv_KjsVnBdiE6M,2945
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tooluniverse/compose_tool.py,sha256=Q0KwVPgbac17VDnkP3pV-st0rNbG__CX0AMux-Os5lg,17117
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tooluniverse/core_tool.py,sha256=hHD8nVSIy6lK2vF3ygKz73gsDEPYEL-otXZXeR7M2SY,5083
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tooluniverse/crossref_tool.py,sha256=oba0kkWI9m9dugf_th1nEXPWPF4onJkFUyhp5h5H4pM,5736
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tooluniverse/ctg_tool.py,sha256=3nR_F-YGpxVmTa6u5xi-mrTmLSH7OBehP4EJo-CQS0Y,46053
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tooluniverse/custom_tool.py,sha256=
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tooluniverse/custom_tool.py,sha256=cUX16ADw3vBtyqb7cIBpgHo_-CjVnkAPPQhw9H0k6T8,3793
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tooluniverse/dailymed_tool.py,sha256=sxIs0xYwX0CVlkhHaPwvGV-Oo1OW2tvsWZypAWujt9k,3800
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tooluniverse/dataset_tool.py,sha256=cmcCz_SFs7V78EZDNLesnQ2Qe9fVz1jOLghrpwe8hM8,11371
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tooluniverse/dblp_tool.py,sha256=aPyEivx5TYUxws7zOsHswQtkVphblMsVPw0lSpyoIQA,4488
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tooluniverse/
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tooluniverse/dbsnp_tool.py,sha256=xOa3t7YdZlnhZ146fDS13Yx6Qo0eiJ7BO6zPQY41WQ8,2188
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tooluniverse/default_config.py,sha256=cI8Z7seXqxDdIYFbIuIU9vXprNRD3ca4rTJTFAH0zsE,9384
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tooluniverse/doaj_tool.py,sha256=mzpnUwYfXdqvyn-txbV1cdWNS7Ty8g6fbvWgF2JN30I,7032
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tooluniverse/doctor.py,sha256=QQ6LiV3HPkWljVKh52QptQmV3xFj53_2yo-A_n8NQ5Y,1326
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tooluniverse/efo_tool.py,sha256=J4tjPFlNa9KhmQTEToBZN-m8jMuF1IKf2yQb1dyTeXI,1394
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tooluniverse/embedding_database.py,sha256=ua-yIyv3dPq2GHdyZmiwZyaUlkKYyV3nslB4H9asvDo,24682
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tooluniverse/embedding_sync.py,sha256=Cq3g64MjNXXpiImrzPMNsCTvGZeEI9009OlHOD3EloI,14669
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tooluniverse/enrichr_tool.py,sha256=YXuHwoG_Hi-kUWK7cY_X21b5pbqoREdG7fJxKq050Jg,9472
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tooluniverse/ensembl_tool.py,sha256=i-kYliN5juitLTJqGiWcm7RXFV8k29XlfNBUC1Y1Z-M,2195
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tooluniverse/europe_pmc_tool.py,sha256=-3CAq5tDhS5NoeHifevadBgP_MHDZJdwNmM5SvjbAa8,6080
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tooluniverse/exceptions.py,sha256=3svVCG7H_G_8E1mco74KWi44u1M7V1JojVycSEWdi_o,5386
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tooluniverse/execute_function.py,sha256=
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tooluniverse/execute_function.py,sha256=hJxcHbewIfXXjPvV7HBZ0PrECMOKTQVhMOFRI5K6fbQ,107533
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tooluniverse/tools/GWAS_search_associations_by_gene.py,sha256=DSxm7VWGr8yxvF-4738dYVmluYvsnHzKTwnQnr_K_rs,1365
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tooluniverse/tools/HAL_search_archive.py,sha256=HyebPBvavXKm8V23tbDIx4-54wxr5XwZaVkgxIiN3gQ,1393
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tooluniverse/tools/HPA_get_biological_processes_by_gene.py,sha256=oPAq4T1HNEOJ-XQCi3CxwhJZxd9sVByYZKPK4DNx5SU,1489
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tooluniverse/tools/HPA_get_cancer_prognostics_by_gene.py,sha256=DnQNCYQrG8O1Z4zKlwaupHKBAE-QPeMaGfCpFG7fzqw,1321
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tooluniverse/tools/LiteratureContextReviewer.py,sha256=Be7cXlsDblIfrMaP0IxL_0OxS8RyLa_e4QvOtUlPsMs,1326
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tooluniverse/tools/LiteratureSearchTool.py,sha256=KAFmS_RcG7zxLV5M1VL2aYmJoEju_EishTmoTpuHfRo,1260
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tooluniverse/tools/LiteratureSynthesisAgent.py,sha256=HHes1D2VkKqlXVE5r_oopyz1B6tify2CDiOpnH0QOYM,1509
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tooluniverse/tools/MedRxiv_search_preprints.py,sha256=hWg-DXj-B5n1z7PgVg68H9dyOqZ2MAhTqJ9smF_jThU,1423
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tooluniverse/tools/MedicalLiteratureReviewer.py,sha256=zy9WEPalcmA_0eVUQLhHLBNcbO_xXdtgkJm3r76tWuQ,2253
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tooluniverse/tools/MedicalTermNormalizer.py,sha256=sQkC6mJaDOTRqaeYrPAutw42izpsDk1alEt4y4Pjy3U,1230
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tooluniverse/tools/MedlinePlus_get_genetics_index.py,sha256=RSpDgVA7lQxIZaKvH0wY3INkOe79nX3sgKXv8XBcflw,1125
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tooluniverse/tools/MedlinePlus_search_topics_by_keyword.py,sha256=Oh7Gl-mSHw4-3EbvJ1LT2Nu3jWrCT2bViroSZuWQSjw,1568
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tooluniverse/tools/MethodologyRigorReviewer.py,sha256=VxW-uelP96-z-j_qFD6G7So1U02_gG25vlR3Ih758eI,1182
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tooluniverse/tools/MultiAgentLiteratureSearch.py,sha256=t-51jgdIcBOcOKUZd_iG6xwOlB5KryUSMYQCP--EveM,1574
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tooluniverse/tools/NICE_Clinical_Guidelines_Search.py,sha256=k7x-aYOJsSI3SUekSXs-Zg7IUQpvqceziN4dtSI2GPk,1419
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tooluniverse/tools/NICE_Guideline_Full_Text.py,sha256=C6OyHfJEurqSgvSAG4ReBSVMq76xzDwHmnPC_XHgap8,1240
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tooluniverse/tools/NoveltySignificanceReviewer.py,sha256=zN7RMKXRM2cnfOwMyo3BbeHKV-PScSOVPJufmqaOK9o,1463
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tooluniverse/tools/OpenTargets_search_category_counts_by_query_string.py,sha256=JjTSAWZo0TsYUp3OJ8-bPSqXu0K5R1srPhX0OWKsjQk,1346
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tooluniverse/tools/OpenTargets_target_disease_evidence.py,sha256=vygJB5wz7b7jCoUEe5yM5BKec_dztk-83JJFwA2FpC0,1360
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tooluniverse/tools/OutputSummarizationComposer.py,sha256=6cxWAMH1dl6Ha-UVYcyWfuMlIL8Mydms6jZzIWusmkE,2045
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tooluniverse/tools/PMC_search_papers.py,sha256=
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tooluniverse/tools/PMC_search_papers.py,sha256=DaJf_7w8EOID9jnsgJFlYkNbwkfbrgGkn9ycDJTT64I,1991
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tooluniverse/tools/ProtocolOptimizer.py,sha256=WVqTYgh-VRq350G8viUGniuVvBPZDaIWknLJPxZ6JEg,1189
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tooluniverse/tools/PubChem_get_CID_by_SMILES.py,sha256=tv32N7mz7J3C-LLDn-QeDHhutgbrXt_QB40VGisbxC4,1128
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tooluniverse/tools/PubChem_get_CID_by_compound_name.py,sha256=zJFAVAucHNJnoRX_1ojCtzULjsclp1daeLq7x-95xdk,1152
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tooluniverse/tools/PubChem_search_compounds_by_substructure.py,sha256=tjFpoqofRQSCJN81NUbLiiFcxj7tECOQU96ALlwgWuU,1271
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tooluniverse/tools/PubMed_Guidelines_Search.py,sha256=gO5Lxv2W2ATDenpyXpWNXtl24WbY0LaI2sDicfDv-C0,1537
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tooluniverse/tools/PubMed_search_articles.py,sha256=
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tooluniverse/tools/PubMed_search_articles.py,sha256=LElAzC46YjylnAq_3Bms67W0bgraG4jODjfPGcrXfNM,1579
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tooluniverse/tools/PubTator3_EntityAutocomplete.py,sha256=NN4snaloj6uLUuwlEG48bXf9olyyHPsLKzo2kbWyC5c,1645
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tooluniverse/tools/PubTator3_LiteratureSearch.py,sha256=He9IQXl3etz0bVbmN7WCYFtZtGBy_BT5VSzkbnkHDKM,1525
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tooluniverse/tools/QuestionRephraser.py,sha256=BMGWA5qwTwg_rFk3MS5dd0x49n_I4y5EBArWunQJIRQ,1369
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tooluniverse/tools/ReproducibilityTransparencyReviewer.py,sha256=P8PoYdej_vt7t3_h1OqBxs7kcYWjz_qI-efwXv-YBKY,1213
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tooluniverse/tools/ResultsInterpretationReviewer.py,sha256=oVZPhI9NyA43bG817TW-8npHWQaZekMhltdXj8Jydsw,1325
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tooluniverse/tools/ScientificTextSummarizer.py,sha256=ufld67qjywZs7ZP48l78mLNnKPbDRHdqVa0tZH_2exI,1614
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tooluniverse/tools/SemanticScholar_search_papers.py,sha256=
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tooluniverse/tools/SemanticScholar_search_papers.py,sha256=MN7Rk7I2-AOOVmPB2xC2tCeLL2clwaYxSvkPQzFTV2c,1552
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tooluniverse/tools/TRIP_Database_Guidelines_Search.py,sha256=hMPZbDkIRvjTk1b34EwSEdH6nnqSuXt-nRP1KlyxazU,1581
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tooluniverse/tools/TestCaseGenerator.py,sha256=RofMgoFDe-Xfm6SOg4-olck9Z8I6HQqp0vQKNrj5qsw,1244
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tooluniverse/tools/ToolCompatibilityAnalyzer.py,sha256=eZ1NirvA1aIoU7KdzeZbMqBBaMHINonQLGwXM9g0NTc,1686
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tooluniverse/tools/Tool_Finder_Keyword.py,sha256=1ivIsXJNylYFPDJbqC5bo7oWsWOLa9N39CDceGEaDtk,1955
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tooluniverse/tools/Tool_Finder_LLM.py,sha256=kIqUNPUbRNjsM1jWqDSZ5bBd2z6f25BFVVXVrNInE9s,1973
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tooluniverse/tools/Tool_RAG.py,sha256=BVF7re1cdn-84kCtyWKYpquUaG-JyihxjFCplxx3_WM,1188
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tooluniverse/tools/UCSC_get_genes_by_region.py,sha256=_nAOBnyGUYeLTZPF0Vw76Igsqu8JHFYMfKAMbO7UuTg,1626
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tooluniverse/tools/UniProt_get_alternative_names_by_accession.py,sha256=1YlnKrFkRl4S7aU6NF67AXk1tUclGWY8j7ZWa3WdFlA,1243
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tooluniverse/tools/UniProt_get_disease_variants_by_accession.py,sha256=slx49NQ8Vjb9yMR_3XSSFlbR35SkIBhMw8N7dGG_pN0,1293
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tooluniverse/tools/UniProt_get_entry_by_accession.py,sha256=a9VOFKgjHZoJnTASgjJjRO_ZkbCW2BJkeNJ3rJQTfnw,1189
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@@ -555,8 +587,8 @@ tooluniverse/tools/WHO_Guideline_Full_Text.py,sha256=GkM3_FjGc4t-VWYIdhW1t6zd_dR
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tooluniverse/tools/WHO_Guidelines_Search.py,sha256=skaP8MvndBmB8bg9HM3mQjWpFTJFLIO_cfRI4WVcSL0,1380
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tooluniverse/tools/Wikidata_SPARQL_query.py,sha256=7KoUwdza5R9uVOT6TzyU3oshRzUYDO91qqpwJA8PB_8,1426
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tooluniverse/tools/WritingPresentationReviewer.py,sha256=7OiJnRcSWjZSp1lJsM9wxBupdMAeHXNymYev-AWU-iI,1171
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tooluniverse/tools/Zenodo_search_records.py,sha256=PfoUaXvGUCifJqFvlkFei6t8CeiT5BHuiEO7d5WApUE,1638
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tooluniverse/tools/__init__.py,sha256=TjCVrrE0xDFTZGmXR_FL7_6KpXNLdjB9y9aI8cOd0Ng,78576
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tooluniverse/tools/_shared_client.py,sha256=USiz6n6TD5T42TRasjOvYqUvl8GnDIxzubfiv_U5obE,4839
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tooluniverse/tools/alphafold_get_annotations.py,sha256=QqykC55liO1JyPebtS_fnnAGaJ9niTgex6IL14JplIo,1401
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tooluniverse/tools/alphafold_get_prediction.py,sha256=7W9r_U6ZoZAnMKUBWWZwnaY4WVpMORJxkIdnCiXmBTo,1489
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tooluniverse/tools/cellosaurus_query_converter.py,sha256=QaZnONoID32c9-zeLjeAZQUfh_geG2LKg2fx5WLU3d4,1475
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tooluniverse/tools/cellosaurus_search_cell_lines.py,sha256=KBJ4fisp-DxCR5FBzcaFkn68WFhkjvd3Siy932yoV-0,1478
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tooluniverse/tools/chembl_disease_target_score.py,sha256=Zm9dbl4JVuIKjWhe42EzBNDzAc0cRlszCy7hL_btl18,1415
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tooluniverse/tools/convert_to_markdown.py,sha256=GcCsCoTKLzC_gS6CUiIP-9VdnWsF4A9VWztgQV6jD3g,1534
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tooluniverse/tools/dbSNP_get_variant_by_rsid.py,sha256=O58MhyK2XUSw6C12HTQNRqIa848pC4c7ITfE1ssR6Yc,1174
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tooluniverse/tools/dict_search.py,sha256=Ux7FL7yON8OkS9QHfpwV63NXMOea5gpjpioQ8vUO38I,1849
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tooluniverse/tools/dili_search.py,sha256=s9EsrUB8JV6oj9z82FA6TX0GL5D8CYrmj4PoL4VPxRw,1809
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tooluniverse/tools/diqt_search.py,sha256=T-vZPnXdF6VnzGEnYu9bSBkhOKXlB_POnO_cMkoC3YQ,1841
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tooluniverse/tools/gnomAD_query_variant.py,sha256=KI031hxoq-KaYyg_LNVYqO4Ucxd9DJyoI2ea2cFKkno,1351
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tooluniverse/tools/gwas_get_associations_for_snp.py,sha256=Zo1AmKB9Upj7BzPc6TVG8pRmq4sp7_UW9VVNeP0TD8s,1695
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tooluniverse/tools/gwas_get_associations_for_study.py,sha256=AcobAhYhZ9BPKG9uVby7GREyu1V2zgq3-A0F4oNKfEo,1409
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tooluniverse/tools/odphp_myhealthfinder.py,sha256=63TT6qurOPvhWdhJ382m69-1Ry6reII6_6mr4lOXCOs,1666
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tooluniverse/tools/odphp_outlink_fetch.py,sha256=0XEAlUab5QodcNNKlzN7uTj019crSyM-bkicdBnAQgA,1570
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tooluniverse/tools/odphp_topicsearch.py,sha256=nqgAzxqrU1WE6BFZzsv73vtpJ-Zd57s5HpDe3CmMxbg,1723
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tooluniverse/tools/openalex_literature_search.py,sha256=
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tooluniverse/tools/openalex_literature_search.py,sha256=U2vc_hfb21FdZnJPkVoaykbH2zLIyQVXA86ApX_vWLg,2089
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tooluniverse/tools/reactome_disease_target_score.py,sha256=pSSPBCJjgyugexkzf8y5s9w44vJ87lKJlHxMftUe1_c,1423
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tooluniverse/tools/search_clinical_trials.py,sha256=skW3aPZ1gXfjKJz8WkxGpt93XlHpnFc5oLIJbffUWc8,2044
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tooluniverse/tools/visualize_molecule_2d.py,sha256=yaaGErioVPG5qMi8nR6DbZbojJVCUc2mDiO7icBG60U,2462
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tooluniverse/tools/visualize_molecule_3d.py,sha256=0fFkjGz0hrNyRBiXRV_FY8yWXR47jZQXatXLxXwbrXw,2693
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tooluniverse/tools/visualize_protein_structure_3d.py,sha256=ifTkgPvtNtvJ9q8d7zmSqSnd32oFmRcKkoO8p1SdVUU,2358
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tooluniverse-1.0.9.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
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tooluniverse-1.0.9.dist-info/METADATA,sha256=O-jvVL_cYpObdnviT8DoBx4ciJ384Ry31TRPgRhoGA8,21159
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tooluniverse-1.0.9.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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tooluniverse-1.0.9.dist-info/entry_points.txt,sha256=SAdqP4tU4mMOtp1YWaOHTwnIHhnoiD1wmfKGlSfNSy0,647
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tooluniverse-1.0.9.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
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tooluniverse-1.0.9.dist-info/RECORD,,
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[console_scripts]
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generate-mcp-tools = tooluniverse.generate_mcp_tools:run_generate
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tooluniverse-agent-search = tooluniverse.web_tools.literature_search_ui.agent_search_app:main
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tooluniverse-doctor = tooluniverse.doctor:main
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tooluniverse-expert-feedback = tooluniverse.remote.expert_feedback.human_expert_mcp_tools:main
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tooluniverse-expert-feedback-web = tooluniverse.remote.expert_feedback.start_web_interface:main
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tooluniverse-mcp = tooluniverse.smcp_server:run_http_server
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tooluniverse-mcp-claude = tooluniverse.smcp_server:run_stdio_server
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tooluniverse-regular-search = tooluniverse.web_tools.literature_search_ui.regular_search_app:main
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tooluniverse-smcp = tooluniverse.smcp_server:run_smcp_server
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tooluniverse-smcp-server = tooluniverse.smcp_server:run_http_server
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tooluniverse-smcp-stdio = tooluniverse.smcp_server:run_stdio_server
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tooluniverse-wide-research = tooluniverse.web_tools.literature_search_ui.simple_app:main
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