tooluniverse 1.0.5__py3-none-any.whl → 1.0.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of tooluniverse might be problematic. Click here for more details.

Files changed (824) hide show
  1. tooluniverse/__init__.py +70 -0
  2. tooluniverse/agentic_tool.py +121 -15
  3. tooluniverse/arxiv_tool.py +109 -0
  4. tooluniverse/base_tool.py +174 -25
  5. tooluniverse/biorxiv_tool.py +116 -0
  6. tooluniverse/cellosaurus_tool.py +1332 -0
  7. tooluniverse/compose_scripts/enhanced_multi_agent_literature_search.py +310 -0
  8. tooluniverse/compose_scripts/multi_agent_literature_search.py +794 -0
  9. tooluniverse/compose_scripts/tool_graph_generation.py +68 -35
  10. tooluniverse/compose_scripts/tool_metadata_generator.py +205 -105
  11. tooluniverse/compose_tool.py +93 -8
  12. tooluniverse/core_tool.py +155 -0
  13. tooluniverse/crossref_tool.py +158 -0
  14. tooluniverse/data/agentic_tools.json +1271 -1179
  15. tooluniverse/data/alphafold_tools.json +356 -105
  16. tooluniverse/data/arxiv_tools.json +94 -0
  17. tooluniverse/data/biorxiv_tools.json +75 -0
  18. tooluniverse/data/cellosaurus_tools.json +260 -0
  19. tooluniverse/data/chembl_tools.json +27 -12
  20. tooluniverse/data/clinicaltrials_gov_tools.json +377 -302
  21. tooluniverse/data/compose_tools.json +123 -16
  22. tooluniverse/data/core_tools.json +113 -0
  23. tooluniverse/data/crossref_tools.json +138 -0
  24. tooluniverse/data/dailymed_tools.json +17 -3
  25. tooluniverse/data/dataset_tools.json +1031 -588
  26. tooluniverse/data/dblp_tools.json +144 -0
  27. tooluniverse/data/disease_target_score_tools.json +20 -10
  28. tooluniverse/data/doaj_tools.json +140 -0
  29. tooluniverse/data/embedding_tools.json +362 -299
  30. tooluniverse/data/enrichr_tools.json +34 -27
  31. tooluniverse/data/europe_pmc_tools.json +108 -16
  32. tooluniverse/data/fatcat_tools.json +77 -0
  33. tooluniverse/data/fda_drug_adverse_event_tools.json +1061 -445
  34. tooluniverse/data/fda_drug_labeling_tools.json +6858 -6901
  35. tooluniverse/data/finder_tools.json +32 -37
  36. tooluniverse/data/gene_ontology_tools.json +19 -7
  37. tooluniverse/data/gwas_tools.json +1720 -959
  38. tooluniverse/data/hal_tools.json +75 -0
  39. tooluniverse/data/hpa_tools.json +53 -14
  40. tooluniverse/data/humanbase_tools.json +51 -43
  41. tooluniverse/data/idmap_tools.json +76 -70
  42. tooluniverse/data/literature_search_tools.json +306 -0
  43. tooluniverse/data/mcp_client_tools_example.json +122 -107
  44. tooluniverse/data/medlineplus_tools.json +50 -10
  45. tooluniverse/data/medrxiv_tools.json +75 -0
  46. tooluniverse/data/molecule_2d_tools.json +134 -0
  47. tooluniverse/data/molecule_3d_tools.json +164 -0
  48. tooluniverse/data/monarch_tools.json +112 -110
  49. tooluniverse/data/odphp_tools.json +389 -119
  50. tooluniverse/data/openaire_tools.json +95 -0
  51. tooluniverse/data/openalex_tools.json +100 -31
  52. tooluniverse/data/opentarget_tools.json +1457 -1372
  53. tooluniverse/data/osf_preprints_tools.json +81 -0
  54. tooluniverse/data/packages/bioinformatics_core_tools.json +40 -10
  55. tooluniverse/data/packages/cheminformatics_tools.json +20 -5
  56. tooluniverse/data/packages/genomics_tools.json +36 -9
  57. tooluniverse/data/packages/machine_learning_tools.json +36 -9
  58. tooluniverse/data/packages/scientific_computing_tools.json +20 -5
  59. tooluniverse/data/packages/single_cell_tools.json +20 -5
  60. tooluniverse/data/packages/structural_biology_tools.json +16 -4
  61. tooluniverse/data/packages/visualization_tools.json +20 -5
  62. tooluniverse/data/pmc_tools.json +117 -0
  63. tooluniverse/data/protein_structure_3d_tools.json +138 -0
  64. tooluniverse/data/pubchem_tools.json +37 -12
  65. tooluniverse/data/pubmed_tools.json +133 -0
  66. tooluniverse/data/pubtator_tools.json +68 -60
  67. tooluniverse/data/rcsb_pdb_tools.json +1532 -1221
  68. tooluniverse/data/semantic_scholar_tools.json +55 -22
  69. tooluniverse/data/special_tools.json +8 -6
  70. tooluniverse/data/tool_composition_tools.json +112 -82
  71. tooluniverse/data/unified_guideline_tools.json +707 -0
  72. tooluniverse/data/unpaywall_tools.json +86 -0
  73. tooluniverse/data/url_fetch_tools.json +102 -82
  74. tooluniverse/data/uspto_tools.json +49 -30
  75. tooluniverse/data/wikidata_sparql_tools.json +45 -0
  76. tooluniverse/data/xml_tools.json +3274 -3113
  77. tooluniverse/data/zenodo_tools.json +90 -0
  78. tooluniverse/dblp_tool.py +132 -0
  79. tooluniverse/default_config.py +30 -0
  80. tooluniverse/doaj_tool.py +183 -0
  81. tooluniverse/doctor.py +48 -0
  82. tooluniverse/europe_pmc_tool.py +132 -17
  83. tooluniverse/exceptions.py +170 -0
  84. tooluniverse/execute_function.py +825 -342
  85. tooluniverse/fatcat_tool.py +65 -0
  86. tooluniverse/generate_tools.py +198 -0
  87. tooluniverse/hal_tool.py +77 -0
  88. tooluniverse/llm_clients.py +283 -20
  89. tooluniverse/mcp_tool_registry.py +4 -1
  90. tooluniverse/medrxiv_tool.py +116 -0
  91. tooluniverse/memory_manager.py +166 -0
  92. tooluniverse/molecule_2d_tool.py +274 -0
  93. tooluniverse/molecule_3d_tool.py +441 -0
  94. tooluniverse/odphp_tool.py +49 -14
  95. tooluniverse/openaire_tool.py +130 -0
  96. tooluniverse/openalex_tool.py +34 -0
  97. tooluniverse/osf_preprints_tool.py +67 -0
  98. tooluniverse/pmc_tool.py +179 -0
  99. tooluniverse/protein_structure_3d_tool.py +295 -0
  100. tooluniverse/pubmed_tool.py +173 -0
  101. tooluniverse/remote/boltz/boltz_mcp_server.py +3 -1
  102. tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py +3 -1
  103. tooluniverse/semantic_scholar_tool.py +40 -10
  104. tooluniverse/smcp.py +228 -263
  105. tooluniverse/smcp_server.py +97 -55
  106. tooluniverse/tool_registry.py +35 -3
  107. tooluniverse/tools/ADMETAI_predict_BBB_penetrance.py +46 -0
  108. tooluniverse/tools/ADMETAI_predict_CYP_interactions.py +46 -0
  109. tooluniverse/tools/ADMETAI_predict_bioavailability.py +46 -0
  110. tooluniverse/tools/ADMETAI_predict_clearance_distribution.py +49 -0
  111. tooluniverse/tools/ADMETAI_predict_nuclear_receptor_activity.py +49 -0
  112. tooluniverse/tools/ADMETAI_predict_physicochemical_properties.py +49 -0
  113. tooluniverse/tools/ADMETAI_predict_solubility_lipophilicity_hydration.py +49 -0
  114. tooluniverse/tools/ADMETAI_predict_stress_response.py +46 -0
  115. tooluniverse/tools/ADMETAI_predict_toxicity.py +46 -0
  116. tooluniverse/tools/AdvancedCodeQualityAnalyzer.py +63 -0
  117. tooluniverse/tools/AdverseEventICDMapper.py +46 -0
  118. tooluniverse/tools/AdverseEventPredictionQuestionGenerator.py +52 -0
  119. tooluniverse/tools/AdverseEventPredictionQuestionGeneratorWithContext.py +59 -0
  120. tooluniverse/tools/ArXiv_search_papers.py +63 -0
  121. tooluniverse/tools/ArgumentDescriptionOptimizer.py +55 -0
  122. tooluniverse/tools/BioRxiv_search_preprints.py +52 -0
  123. tooluniverse/tools/BiomarkerDiscoveryWorkflow.py +55 -0
  124. tooluniverse/tools/CORE_search_papers.py +67 -0
  125. tooluniverse/tools/CallAgent.py +46 -0
  126. tooluniverse/tools/ChEMBL_search_similar_molecules.py +59 -0
  127. tooluniverse/tools/CodeOptimizer.py +55 -0
  128. tooluniverse/tools/CodeQualityAnalyzer.py +71 -0
  129. tooluniverse/tools/ComprehensiveDrugDiscoveryPipeline.py +49 -0
  130. tooluniverse/tools/Crossref_search_works.py +55 -0
  131. tooluniverse/tools/DBLP_search_publications.py +52 -0
  132. tooluniverse/tools/DOAJ_search_articles.py +55 -0
  133. tooluniverse/tools/DailyMed_get_spl_by_setid.py +52 -0
  134. tooluniverse/tools/DailyMed_search_spls.py +79 -0
  135. tooluniverse/tools/DataAnalysisValidityReviewer.py +49 -0
  136. tooluniverse/tools/DescriptionAnalyzer.py +55 -0
  137. tooluniverse/tools/DescriptionQualityEvaluator.py +59 -0
  138. tooluniverse/tools/DomainExpertValidator.py +63 -0
  139. tooluniverse/tools/DrugSafetyAnalyzer.py +59 -0
  140. tooluniverse/tools/EthicalComplianceReviewer.py +49 -0
  141. tooluniverse/tools/EuropePMC_Guidelines_Search.py +52 -0
  142. tooluniverse/tools/EuropePMC_search_articles.py +52 -0
  143. tooluniverse/tools/ExperimentalDesignScorer.py +55 -0
  144. tooluniverse/tools/FAERS_count_additive_administration_routes.py +52 -0
  145. tooluniverse/tools/FAERS_count_additive_adverse_reactions.py +71 -0
  146. tooluniverse/tools/FAERS_count_additive_event_reports_by_country.py +63 -0
  147. tooluniverse/tools/FAERS_count_additive_reaction_outcomes.py +63 -0
  148. tooluniverse/tools/FAERS_count_additive_reports_by_reporter_country.py +63 -0
  149. tooluniverse/tools/FAERS_count_additive_seriousness_classification.py +63 -0
  150. tooluniverse/tools/FAERS_count_country_by_drug_event.py +63 -0
  151. tooluniverse/tools/FAERS_count_death_related_by_drug.py +49 -0
  152. tooluniverse/tools/FAERS_count_drug_routes_by_event.py +52 -0
  153. tooluniverse/tools/FAERS_count_drugs_by_drug_event.py +63 -0
  154. tooluniverse/tools/FAERS_count_outcomes_by_drug_event.py +63 -0
  155. tooluniverse/tools/FAERS_count_patient_age_distribution.py +49 -0
  156. tooluniverse/tools/FAERS_count_reactions_by_drug_event.py +71 -0
  157. tooluniverse/tools/FAERS_count_reportercountry_by_drug_event.py +63 -0
  158. tooluniverse/tools/FAERS_count_seriousness_by_drug_event.py +63 -0
  159. tooluniverse/tools/FDA_get_abuse_dependence_info_by_drug_name.py +55 -0
  160. tooluniverse/tools/FDA_get_abuse_info_by_drug_name.py +55 -0
  161. tooluniverse/tools/FDA_get_accessories_info_by_drug_name.py +55 -0
  162. tooluniverse/tools/FDA_get_active_ingredient_info_by_drug_name.py +55 -0
  163. tooluniverse/tools/FDA_get_adverse_reactions_by_drug_name.py +55 -0
  164. tooluniverse/tools/FDA_get_alarms_by_drug_name.py +55 -0
  165. tooluniverse/tools/FDA_get_animal_pharmacology_info_by_drug_name.py +55 -0
  166. tooluniverse/tools/FDA_get_assembly_installation_info_by_drug_name.py +55 -0
  167. tooluniverse/tools/FDA_get_boxed_warning_info_by_drug_name.py +55 -0
  168. tooluniverse/tools/FDA_get_brand_name_generic_name.py +52 -0
  169. tooluniverse/tools/FDA_get_calibration_instructions_by_drug_name.py +55 -0
  170. tooluniverse/tools/FDA_get_carcinogenic_mutagenic_fertility_by_drug_name.py +55 -0
  171. tooluniverse/tools/FDA_get_child_safety_info_by_drug_name.py +55 -0
  172. tooluniverse/tools/FDA_get_clinical_pharmacology_by_drug_name.py +55 -0
  173. tooluniverse/tools/FDA_get_clinical_studies_info_by_drug_name.py +55 -0
  174. tooluniverse/tools/FDA_get_contact_for_questions_info_by_drug_name.py +55 -0
  175. tooluniverse/tools/FDA_get_contraindications_by_drug_name.py +55 -0
  176. tooluniverse/tools/FDA_get_controlled_substance_DEA_schedule_info_by_drug_name.py +55 -0
  177. tooluniverse/tools/FDA_get_dear_health_care_provider_letter_info_by_drug_name.py +55 -0
  178. tooluniverse/tools/FDA_get_dependence_info_by_drug_name.py +55 -0
  179. tooluniverse/tools/FDA_get_disposal_info_by_drug_name.py +55 -0
  180. tooluniverse/tools/FDA_get_do_not_use_info_by_drug_name.py +55 -0
  181. tooluniverse/tools/FDA_get_document_id_by_drug_name.py +55 -0
  182. tooluniverse/tools/FDA_get_dosage_and_storage_information_by_drug_name.py +55 -0
  183. tooluniverse/tools/FDA_get_dosage_forms_and_strengths_by_drug_name.py +55 -0
  184. tooluniverse/tools/FDA_get_drug_generic_name.py +46 -0
  185. tooluniverse/tools/FDA_get_drug_interactions_by_drug_name.py +55 -0
  186. tooluniverse/tools/FDA_get_drug_name_by_SPL_ID.py +55 -0
  187. tooluniverse/tools/FDA_get_drug_name_by_adverse_reaction.py +59 -0
  188. tooluniverse/tools/FDA_get_drug_name_by_calibration_instructions.py +59 -0
  189. tooluniverse/tools/FDA_get_drug_name_by_dependence_info.py +59 -0
  190. tooluniverse/tools/FDA_get_drug_name_by_document_id.py +55 -0
  191. tooluniverse/tools/FDA_get_drug_name_by_dosage_info.py +55 -0
  192. tooluniverse/tools/FDA_get_drug_name_by_environmental_warning.py +59 -0
  193. tooluniverse/tools/FDA_get_drug_name_by_inactive_ingredient.py +59 -0
  194. tooluniverse/tools/FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation.py +55 -0
  195. tooluniverse/tools/FDA_get_drug_name_by_labor_and_delivery_info.py +59 -0
  196. tooluniverse/tools/FDA_get_drug_name_by_microbiology.py +59 -0
  197. tooluniverse/tools/FDA_get_drug_name_by_other_safety_info.py +55 -0
  198. tooluniverse/tools/FDA_get_drug_name_by_pharmacodynamics.py +59 -0
  199. tooluniverse/tools/FDA_get_drug_name_by_pharmacogenomics.py +59 -0
  200. tooluniverse/tools/FDA_get_drug_name_by_precautions.py +55 -0
  201. tooluniverse/tools/FDA_get_drug_name_by_pregnancy_or_breastfeeding_info.py +59 -0
  202. tooluniverse/tools/FDA_get_drug_name_by_principal_display_panel.py +59 -0
  203. tooluniverse/tools/FDA_get_drug_name_by_reference.py +55 -0
  204. tooluniverse/tools/FDA_get_drug_name_by_set_id.py +55 -0
  205. tooluniverse/tools/FDA_get_drug_name_by_stop_use_info.py +55 -0
  206. tooluniverse/tools/FDA_get_drug_name_by_storage_and_handling_info.py +55 -0
  207. tooluniverse/tools/FDA_get_drug_name_by_warnings.py +55 -0
  208. tooluniverse/tools/FDA_get_drug_name_from_patient_package_insert.py +59 -0
  209. tooluniverse/tools/FDA_get_drug_names_by_abuse_dependence_info.py +55 -0
  210. tooluniverse/tools/FDA_get_drug_names_by_abuse_info.py +63 -0
  211. tooluniverse/tools/FDA_get_drug_names_by_accessories.py +63 -0
  212. tooluniverse/tools/FDA_get_drug_names_by_active_ingredient.py +63 -0
  213. tooluniverse/tools/FDA_get_drug_names_by_alarm.py +63 -0
  214. tooluniverse/tools/FDA_get_drug_names_by_animal_pharmacology_info.py +63 -0
  215. tooluniverse/tools/FDA_get_drug_names_by_application_number_NDC_number.py +59 -0
  216. tooluniverse/tools/FDA_get_drug_names_by_assembly_installation_info.py +63 -0
  217. tooluniverse/tools/FDA_get_drug_names_by_boxed_warning.py +63 -0
  218. tooluniverse/tools/FDA_get_drug_names_by_child_safety_info.py +63 -0
  219. tooluniverse/tools/FDA_get_drug_names_by_clinical_pharmacology.py +63 -0
  220. tooluniverse/tools/FDA_get_drug_names_by_clinical_studies.py +63 -0
  221. tooluniverse/tools/FDA_get_drug_names_by_consulting_doctor_pharmacist_info.py +63 -0
  222. tooluniverse/tools/FDA_get_drug_names_by_contraindications.py +63 -0
  223. tooluniverse/tools/FDA_get_drug_names_by_controlled_substance_DEA_schedule.py +63 -0
  224. tooluniverse/tools/FDA_get_drug_names_by_dear_health_care_provider_letter_info.py +63 -0
  225. tooluniverse/tools/FDA_get_drug_names_by_disposal_info.py +63 -0
  226. tooluniverse/tools/FDA_get_drug_names_by_dosage_forms_and_strengths_info.py +63 -0
  227. tooluniverse/tools/FDA_get_drug_names_by_drug_interactions.py +63 -0
  228. tooluniverse/tools/FDA_get_drug_names_by_effective_time.py +63 -0
  229. tooluniverse/tools/FDA_get_drug_names_by_food_safety_warnings.py +63 -0
  230. tooluniverse/tools/FDA_get_drug_names_by_general_precautions.py +63 -0
  231. tooluniverse/tools/FDA_get_drug_names_by_geriatric_use.py +63 -0
  232. tooluniverse/tools/FDA_get_drug_names_by_health_claim.py +63 -0
  233. tooluniverse/tools/FDA_get_drug_names_by_indication.py +55 -0
  234. tooluniverse/tools/FDA_get_drug_names_by_info_for_nursing_mothers.py +63 -0
  235. tooluniverse/tools/FDA_get_drug_names_by_information_for_owners_or_caregivers.py +63 -0
  236. tooluniverse/tools/FDA_get_drug_names_by_ingredient.py +63 -0
  237. tooluniverse/tools/FDA_get_drug_names_by_instructions_for_use.py +63 -0
  238. tooluniverse/tools/FDA_get_drug_names_by_lab_test_interference.py +63 -0
  239. tooluniverse/tools/FDA_get_drug_names_by_lab_tests.py +63 -0
  240. tooluniverse/tools/FDA_get_drug_names_by_mechanism_of_action.py +63 -0
  241. tooluniverse/tools/FDA_get_drug_names_by_medication_guide.py +63 -0
  242. tooluniverse/tools/FDA_get_drug_names_by_nonclinical_toxicology_info.py +63 -0
  243. tooluniverse/tools/FDA_get_drug_names_by_nonteratogenic_effects.py +63 -0
  244. tooluniverse/tools/FDA_get_drug_names_by_overdosage_info.py +63 -0
  245. tooluniverse/tools/FDA_get_drug_names_by_pediatric_use.py +63 -0
  246. tooluniverse/tools/FDA_get_drug_names_by_pharmacokinetics.py +63 -0
  247. tooluniverse/tools/FDA_get_drug_names_by_population_use.py +63 -0
  248. tooluniverse/tools/FDA_get_drug_names_by_pregnancy_effects_info.py +63 -0
  249. tooluniverse/tools/FDA_get_drug_names_by_residue_warning.py +63 -0
  250. tooluniverse/tools/FDA_get_drug_names_by_risk.py +63 -0
  251. tooluniverse/tools/FDA_get_drug_names_by_route.py +63 -0
  252. tooluniverse/tools/FDA_get_drug_names_by_safe_handling_warning.py +63 -0
  253. tooluniverse/tools/FDA_get_drug_names_by_safety_summary.py +63 -0
  254. tooluniverse/tools/FDA_get_drug_names_by_spl_indexing_data_elements.py +63 -0
  255. tooluniverse/tools/FDA_get_drug_names_by_teratogenic_effects.py +63 -0
  256. tooluniverse/tools/FDA_get_drug_names_by_user_safety_warning.py +63 -0
  257. tooluniverse/tools/FDA_get_drug_names_by_warnings_and_cautions.py +63 -0
  258. tooluniverse/tools/FDA_get_drugs_by_carcinogenic_mutagenic_fertility.py +63 -0
  259. tooluniverse/tools/FDA_get_effective_time_by_drug_name.py +55 -0
  260. tooluniverse/tools/FDA_get_environmental_warning_by_drug_name.py +55 -0
  261. tooluniverse/tools/FDA_get_general_precautions_by_drug_name.py +55 -0
  262. tooluniverse/tools/FDA_get_geriatric_use_info_by_drug_name.py +55 -0
  263. tooluniverse/tools/FDA_get_health_claims_by_drug_name.py +55 -0
  264. tooluniverse/tools/FDA_get_inactive_ingredient_info_by_drug_name.py +55 -0
  265. tooluniverse/tools/FDA_get_indications_by_drug_name.py +55 -0
  266. tooluniverse/tools/FDA_get_info_for_nursing_mothers_by_drug_name.py +55 -0
  267. tooluniverse/tools/FDA_get_info_for_patients_by_drug_name.py +55 -0
  268. tooluniverse/tools/FDA_get_info_on_conditions_for_doctor_consultation_by_drug_name.py +55 -0
  269. tooluniverse/tools/FDA_get_info_on_consulting_doctor_pharmacist_by_drug_name.py +55 -0
  270. tooluniverse/tools/FDA_get_information_for_owners_or_caregivers_by_drug_name.py +55 -0
  271. tooluniverse/tools/FDA_get_ingredients_by_drug_name.py +55 -0
  272. tooluniverse/tools/FDA_get_instructions_for_use_by_drug_name.py +55 -0
  273. tooluniverse/tools/FDA_get_lab_test_interference_info_by_drug_name.py +55 -0
  274. tooluniverse/tools/FDA_get_lab_tests_by_drug_name.py +55 -0
  275. tooluniverse/tools/FDA_get_labor_and_delivery_info_by_drug_name.py +55 -0
  276. tooluniverse/tools/FDA_get_manufacturer_name_NDC_number_by_drug_name.py +55 -0
  277. tooluniverse/tools/FDA_get_mechanism_of_action_by_drug_name.py +55 -0
  278. tooluniverse/tools/FDA_get_medication_guide_info_by_drug_name.py +55 -0
  279. tooluniverse/tools/FDA_get_microbiology_info_by_drug_name.py +55 -0
  280. tooluniverse/tools/FDA_get_nonclinical_toxicology_info_by_drug_name.py +55 -0
  281. tooluniverse/tools/FDA_get_nonteratogenic_effects_by_drug_name.py +55 -0
  282. tooluniverse/tools/FDA_get_other_safety_info_by_drug_name.py +55 -0
  283. tooluniverse/tools/FDA_get_overdosage_info_by_drug_name.py +55 -0
  284. tooluniverse/tools/FDA_get_patient_package_insert_from_drug_name.py +55 -0
  285. tooluniverse/tools/FDA_get_pediatric_use_info_by_drug_name.py +55 -0
  286. tooluniverse/tools/FDA_get_pharmacodynamics_by_drug_name.py +55 -0
  287. tooluniverse/tools/FDA_get_pharmacogenomics_info_by_drug_name.py +55 -0
  288. tooluniverse/tools/FDA_get_pharmacokinetics_by_drug_name.py +55 -0
  289. tooluniverse/tools/FDA_get_population_use_info_by_drug_name.py +55 -0
  290. tooluniverse/tools/FDA_get_precautions_by_drug_name.py +55 -0
  291. tooluniverse/tools/FDA_get_pregnancy_effects_info_by_drug_name.py +55 -0
  292. tooluniverse/tools/FDA_get_pregnancy_or_breastfeeding_info_by_drug_name.py +55 -0
  293. tooluniverse/tools/FDA_get_principal_display_panel_by_drug_name.py +55 -0
  294. tooluniverse/tools/FDA_get_purpose_info_by_drug_name.py +55 -0
  295. tooluniverse/tools/FDA_get_recent_changes_by_drug_name.py +55 -0
  296. tooluniverse/tools/FDA_get_reference_info_by_drug_name.py +55 -0
  297. tooluniverse/tools/FDA_get_residue_warning_by_drug_name.py +55 -0
  298. tooluniverse/tools/FDA_get_risk_info_by_drug_name.py +55 -0
  299. tooluniverse/tools/FDA_get_route_info_by_drug_name.py +55 -0
  300. tooluniverse/tools/FDA_get_safe_handling_warnings_by_drug_name.py +55 -0
  301. tooluniverse/tools/FDA_get_safety_summary_by_drug_name.py +55 -0
  302. tooluniverse/tools/FDA_get_spl_indexing_data_elements_by_drug_name.py +55 -0
  303. tooluniverse/tools/FDA_get_spl_unclassified_section_by_drug_name.py +55 -0
  304. tooluniverse/tools/FDA_get_stop_use_info_by_drug_name.py +55 -0
  305. tooluniverse/tools/FDA_get_storage_and_handling_info_by_drug_name.py +55 -0
  306. tooluniverse/tools/FDA_get_teratogenic_effects_by_drug_name.py +55 -0
  307. tooluniverse/tools/FDA_get_user_safety_warning_by_drug_names.py +55 -0
  308. tooluniverse/tools/FDA_get_warnings_and_cautions_by_drug_name.py +55 -0
  309. tooluniverse/tools/FDA_get_warnings_by_drug_name.py +55 -0
  310. tooluniverse/tools/FDA_get_when_using_info.py +55 -0
  311. tooluniverse/tools/FDA_retrieve_device_use_by_drug_name.py +55 -0
  312. tooluniverse/tools/FDA_retrieve_drug_name_by_device_use.py +59 -0
  313. tooluniverse/tools/FDA_retrieve_drug_names_by_patient_medication_info.py +55 -0
  314. tooluniverse/tools/FDA_retrieve_patient_medication_info_by_drug_name.py +55 -0
  315. tooluniverse/tools/Fatcat_search_scholar.py +52 -0
  316. tooluniverse/tools/Finish.py +44 -0
  317. tooluniverse/tools/GO_get_annotations_for_gene.py +46 -0
  318. tooluniverse/tools/GO_get_genes_for_term.py +55 -0
  319. tooluniverse/tools/GO_get_term_by_id.py +46 -0
  320. tooluniverse/tools/GO_get_term_details.py +46 -0
  321. tooluniverse/tools/GO_search_terms.py +46 -0
  322. tooluniverse/tools/HAL_search_archive.py +52 -0
  323. tooluniverse/tools/HPA_get_biological_processes_by_gene.py +52 -0
  324. tooluniverse/tools/HPA_get_cancer_prognostics_by_gene.py +49 -0
  325. tooluniverse/tools/HPA_get_comparative_expression_by_gene_and_cellline.py +52 -0
  326. tooluniverse/tools/HPA_get_comprehensive_gene_details_by_ensembl_id.py +63 -0
  327. tooluniverse/tools/HPA_get_contextual_biological_process_analysis.py +52 -0
  328. tooluniverse/tools/HPA_get_disease_expression_by_gene_tissue_disease.py +59 -0
  329. tooluniverse/tools/HPA_get_gene_basic_info_by_ensembl_id.py +49 -0
  330. tooluniverse/tools/HPA_get_gene_tsv_data_by_ensembl_id.py +49 -0
  331. tooluniverse/tools/HPA_get_protein_interactions_by_gene.py +49 -0
  332. tooluniverse/tools/HPA_get_rna_expression_by_source.py +59 -0
  333. tooluniverse/tools/HPA_get_rna_expression_in_specific_tissues.py +52 -0
  334. tooluniverse/tools/HPA_get_subcellular_location.py +46 -0
  335. tooluniverse/tools/HPA_search_genes_by_query.py +49 -0
  336. tooluniverse/tools/HypothesisGenerator.py +63 -0
  337. tooluniverse/tools/LabelGenerator.py +67 -0
  338. tooluniverse/tools/LiteratureContextReviewer.py +55 -0
  339. tooluniverse/tools/LiteratureSearchTool.py +49 -0
  340. tooluniverse/tools/MedRxiv_search_preprints.py +52 -0
  341. tooluniverse/tools/MedicalLiteratureReviewer.py +71 -0
  342. tooluniverse/tools/MedicalTermNormalizer.py +46 -0
  343. tooluniverse/tools/MedlinePlus_connect_lookup_by_code.py +67 -0
  344. tooluniverse/tools/MedlinePlus_get_genetics_condition_by_name.py +52 -0
  345. tooluniverse/tools/MedlinePlus_get_genetics_gene_by_name.py +52 -0
  346. tooluniverse/tools/MedlinePlus_get_genetics_index.py +44 -0
  347. tooluniverse/tools/MedlinePlus_search_topics_by_keyword.py +55 -0
  348. tooluniverse/tools/MethodologyRigorReviewer.py +49 -0
  349. tooluniverse/tools/MultiAgentLiteratureSearch.py +59 -0
  350. tooluniverse/tools/NICE_Clinical_Guidelines_Search.py +52 -0
  351. tooluniverse/tools/NICE_Guideline_Full_Text.py +46 -0
  352. tooluniverse/tools/NoveltySignificanceReviewer.py +59 -0
  353. tooluniverse/tools/OSF_search_preprints.py +59 -0
  354. tooluniverse/tools/OSL_get_efo_id_by_disease_name.py +46 -0
  355. tooluniverse/tools/OpenAIRE_search_publications.py +55 -0
  356. tooluniverse/tools/OpenAlex_Guidelines_Search.py +63 -0
  357. tooluniverse/tools/OpenTargets_drug_pharmacogenomics_data.py +52 -0
  358. tooluniverse/tools/OpenTargets_get_approved_indications_by_drug_chemblId.py +49 -0
  359. tooluniverse/tools/OpenTargets_get_associated_diseases_by_drug_chemblId.py +49 -0
  360. tooluniverse/tools/OpenTargets_get_associated_drugs_by_disease_efoId.py +52 -0
  361. tooluniverse/tools/OpenTargets_get_associated_drugs_by_target_ensemblID.py +55 -0
  362. tooluniverse/tools/OpenTargets_get_associated_phenotypes_by_disease_efoId.py +49 -0
  363. tooluniverse/tools/OpenTargets_get_associated_targets_by_disease_efoId.py +49 -0
  364. tooluniverse/tools/OpenTargets_get_associated_targets_by_drug_chemblId.py +49 -0
  365. tooluniverse/tools/OpenTargets_get_biological_mouse_models_by_ensemblID.py +49 -0
  366. tooluniverse/tools/OpenTargets_get_chemical_probes_by_target_ensemblID.py +49 -0
  367. tooluniverse/tools/OpenTargets_get_disease_ancestors_parents_by_efoId.py +49 -0
  368. tooluniverse/tools/OpenTargets_get_disease_descendants_children_by_efoId.py +49 -0
  369. tooluniverse/tools/OpenTargets_get_disease_description_by_efoId.py +49 -0
  370. tooluniverse/tools/OpenTargets_get_disease_id_description_by_name.py +49 -0
  371. tooluniverse/tools/OpenTargets_get_disease_ids_by_efoId.py +46 -0
  372. tooluniverse/tools/OpenTargets_get_disease_ids_by_name.py +46 -0
  373. tooluniverse/tools/OpenTargets_get_disease_locations_by_efoId.py +49 -0
  374. tooluniverse/tools/OpenTargets_get_disease_synonyms_by_efoId.py +49 -0
  375. tooluniverse/tools/OpenTargets_get_disease_therapeutic_areas_by_efoId.py +49 -0
  376. tooluniverse/tools/OpenTargets_get_diseases_phenotypes_by_target_ensembl.py +49 -0
  377. tooluniverse/tools/OpenTargets_get_drug_adverse_events_by_chemblId.py +52 -0
  378. tooluniverse/tools/OpenTargets_get_drug_approval_status_by_chemblId.py +49 -0
  379. tooluniverse/tools/OpenTargets_get_drug_chembId_by_generic_name.py +49 -0
  380. tooluniverse/tools/OpenTargets_get_drug_description_by_chemblId.py +49 -0
  381. tooluniverse/tools/OpenTargets_get_drug_id_description_by_name.py +49 -0
  382. tooluniverse/tools/OpenTargets_get_drug_indications_by_chemblId.py +49 -0
  383. tooluniverse/tools/OpenTargets_get_drug_mechanisms_of_action_by_chemblId.py +49 -0
  384. tooluniverse/tools/OpenTargets_get_drug_synonyms_by_chemblId.py +49 -0
  385. tooluniverse/tools/OpenTargets_get_drug_trade_names_by_chemblId.py +49 -0
  386. tooluniverse/tools/OpenTargets_get_drug_warnings_by_chemblId.py +49 -0
  387. tooluniverse/tools/OpenTargets_get_drug_withdrawn_blackbox_status_by_chemblId.py +49 -0
  388. tooluniverse/tools/OpenTargets_get_gene_ontology_terms_by_goID.py +49 -0
  389. tooluniverse/tools/OpenTargets_get_known_drugs_by_drug_chemblId.py +49 -0
  390. tooluniverse/tools/OpenTargets_get_parent_child_molecules_by_drug_chembl_ID.py +49 -0
  391. tooluniverse/tools/OpenTargets_get_publications_by_disease_efoId.py +71 -0
  392. tooluniverse/tools/OpenTargets_get_publications_by_drug_chemblId.py +71 -0
  393. tooluniverse/tools/OpenTargets_get_publications_by_target_ensemblID.py +71 -0
  394. tooluniverse/tools/OpenTargets_get_similar_entities_by_disease_efoId.py +55 -0
  395. tooluniverse/tools/OpenTargets_get_similar_entities_by_drug_chemblId.py +55 -0
  396. tooluniverse/tools/OpenTargets_get_similar_entities_by_target_ensemblID.py +55 -0
  397. tooluniverse/tools/OpenTargets_get_target_classes_by_ensemblID.py +49 -0
  398. tooluniverse/tools/OpenTargets_get_target_constraint_info_by_ensemblID.py +49 -0
  399. tooluniverse/tools/OpenTargets_get_target_enabling_packages_by_ensemblID.py +49 -0
  400. tooluniverse/tools/OpenTargets_get_target_gene_ontology_by_ensemblID.py +49 -0
  401. tooluniverse/tools/OpenTargets_get_target_genomic_location_by_ensemblID.py +49 -0
  402. tooluniverse/tools/OpenTargets_get_target_homologues_by_ensemblID.py +49 -0
  403. tooluniverse/tools/OpenTargets_get_target_id_description_by_name.py +49 -0
  404. tooluniverse/tools/OpenTargets_get_target_interactions_by_ensemblID.py +52 -0
  405. tooluniverse/tools/OpenTargets_get_target_safety_profile_by_ensemblID.py +49 -0
  406. tooluniverse/tools/OpenTargets_get_target_subcellular_locations_by_ensemblID.py +49 -0
  407. tooluniverse/tools/OpenTargets_get_target_synonyms_by_ensemblID.py +49 -0
  408. tooluniverse/tools/OpenTargets_get_target_tractability_by_ensemblID.py +49 -0
  409. tooluniverse/tools/OpenTargets_map_any_disease_id_to_all_other_ids.py +49 -0
  410. tooluniverse/tools/OpenTargets_multi_entity_search_by_query_string.py +59 -0
  411. tooluniverse/tools/OpenTargets_search_category_counts_by_query_string.py +49 -0
  412. tooluniverse/tools/OpenTargets_target_disease_evidence.py +52 -0
  413. tooluniverse/tools/OutputSummarizationComposer.py +71 -0
  414. tooluniverse/tools/PMC_search_papers.py +67 -0
  415. tooluniverse/tools/ProtocolOptimizer.py +49 -0
  416. tooluniverse/tools/PubChem_get_CID_by_SMILES.py +46 -0
  417. tooluniverse/tools/PubChem_get_CID_by_compound_name.py +46 -0
  418. tooluniverse/tools/PubChem_get_associated_patents_by_CID.py +46 -0
  419. tooluniverse/tools/PubChem_get_compound_2D_image_by_CID.py +52 -0
  420. tooluniverse/tools/PubChem_get_compound_properties_by_CID.py +46 -0
  421. tooluniverse/tools/PubChem_get_compound_synonyms_by_CID.py +46 -0
  422. tooluniverse/tools/PubChem_get_compound_xrefs_by_CID.py +52 -0
  423. tooluniverse/tools/PubChem_search_compounds_by_similarity.py +52 -0
  424. tooluniverse/tools/PubChem_search_compounds_by_substructure.py +49 -0
  425. tooluniverse/tools/PubMed_Guidelines_Search.py +55 -0
  426. tooluniverse/tools/PubMed_search_articles.py +55 -0
  427. tooluniverse/tools/PubTator3_EntityAutocomplete.py +59 -0
  428. tooluniverse/tools/PubTator3_LiteratureSearch.py +55 -0
  429. tooluniverse/tools/QuestionRephraser.py +52 -0
  430. tooluniverse/tools/Reactome_get_pathway_reactions.py +46 -0
  431. tooluniverse/tools/ReproducibilityTransparencyReviewer.py +49 -0
  432. tooluniverse/tools/ResultsInterpretationReviewer.py +55 -0
  433. tooluniverse/tools/ScientificTextSummarizer.py +59 -0
  434. tooluniverse/tools/SemanticScholar_search_papers.py +55 -0
  435. tooluniverse/tools/TRIP_Database_Guidelines_Search.py +55 -0
  436. tooluniverse/tools/TestCaseGenerator.py +46 -0
  437. tooluniverse/tools/ToolCompatibilityAnalyzer.py +59 -0
  438. tooluniverse/tools/ToolDescriptionOptimizer.py +67 -0
  439. tooluniverse/tools/ToolDiscover.py +63 -0
  440. tooluniverse/tools/ToolGraphComposer.py +71 -0
  441. tooluniverse/tools/ToolGraphGenerationPipeline.py +63 -0
  442. tooluniverse/tools/ToolImplementationGenerator.py +67 -0
  443. tooluniverse/tools/ToolMetadataGenerationPipeline.py +63 -0
  444. tooluniverse/tools/ToolMetadataGenerator.py +55 -0
  445. tooluniverse/tools/ToolMetadataStandardizer.py +52 -0
  446. tooluniverse/tools/ToolOptimizer.py +59 -0
  447. tooluniverse/tools/ToolOutputSummarizer.py +67 -0
  448. tooluniverse/tools/ToolQualityEvaluator.py +59 -0
  449. tooluniverse/tools/ToolRelationshipDetector.py +52 -0
  450. tooluniverse/tools/ToolSpecificationGenerator.py +67 -0
  451. tooluniverse/tools/ToolSpecificationOptimizer.py +63 -0
  452. tooluniverse/tools/Tool_Finder.py +67 -0
  453. tooluniverse/tools/Tool_Finder_Keyword.py +67 -0
  454. tooluniverse/tools/Tool_Finder_LLM.py +67 -0
  455. tooluniverse/tools/Tool_RAG.py +49 -0
  456. tooluniverse/tools/UniProt_get_alternative_names_by_accession.py +49 -0
  457. tooluniverse/tools/UniProt_get_disease_variants_by_accession.py +49 -0
  458. tooluniverse/tools/UniProt_get_entry_by_accession.py +49 -0
  459. tooluniverse/tools/UniProt_get_function_by_accession.py +49 -0
  460. tooluniverse/tools/UniProt_get_isoform_ids_by_accession.py +49 -0
  461. tooluniverse/tools/UniProt_get_organism_by_accession.py +49 -0
  462. tooluniverse/tools/UniProt_get_ptm_processing_by_accession.py +49 -0
  463. tooluniverse/tools/UniProt_get_recommended_name_by_accession.py +49 -0
  464. tooluniverse/tools/UniProt_get_sequence_by_accession.py +49 -0
  465. tooluniverse/tools/UniProt_get_subcellular_location_by_accession.py +49 -0
  466. tooluniverse/tools/Unpaywall_check_oa_status.py +52 -0
  467. tooluniverse/tools/WHO_Guideline_Full_Text.py +46 -0
  468. tooluniverse/tools/WHO_Guidelines_Search.py +52 -0
  469. tooluniverse/tools/Wikidata_SPARQL_query.py +52 -0
  470. tooluniverse/tools/WritingPresentationReviewer.py +49 -0
  471. tooluniverse/tools/Zenodo_search_records.py +59 -0
  472. tooluniverse/tools/__init__.py +1738 -0
  473. tooluniverse/tools/_shared_client.py +138 -0
  474. tooluniverse/tools/alphafold_get_annotations.py +52 -0
  475. tooluniverse/tools/alphafold_get_prediction.py +55 -0
  476. tooluniverse/tools/alphafold_get_summary.py +46 -0
  477. tooluniverse/tools/call_agentic_human.py +46 -0
  478. tooluniverse/tools/cancer_biomarkers_disease_target_score.py +52 -0
  479. tooluniverse/tools/cancer_gene_census_disease_target_score.py +52 -0
  480. tooluniverse/tools/cellosaurus_get_cell_line_info.py +55 -0
  481. tooluniverse/tools/cellosaurus_query_converter.py +52 -0
  482. tooluniverse/tools/cellosaurus_search_cell_lines.py +55 -0
  483. tooluniverse/tools/chembl_disease_target_score.py +52 -0
  484. tooluniverse/tools/dict_search.py +67 -0
  485. tooluniverse/tools/dili_search.py +67 -0
  486. tooluniverse/tools/diqt_search.py +67 -0
  487. tooluniverse/tools/disease_target_score.py +59 -0
  488. tooluniverse/tools/drugbank_filter_drugs_by_name.py +55 -0
  489. tooluniverse/tools/drugbank_full_search.py +67 -0
  490. tooluniverse/tools/drugbank_get_drug_basic_info_by_drug_name_or_drugbank_id.py +63 -0
  491. tooluniverse/tools/drugbank_get_drug_chemistry_by_drug_name_or_drugbank_id.py +63 -0
  492. tooluniverse/tools/drugbank_get_drug_interactions_by_drug_name_or_drugbank_id.py +63 -0
  493. tooluniverse/tools/drugbank_get_drug_name_and_description_by_indication.py +63 -0
  494. tooluniverse/tools/drugbank_get_drug_name_and_description_by_pathway_name.py +63 -0
  495. tooluniverse/tools/drugbank_get_drug_name_and_description_by_target_name.py +63 -0
  496. tooluniverse/tools/drugbank_get_drug_name_description_pharmacology_by_mechanism_of_action.py +63 -0
  497. tooluniverse/tools/drugbank_get_drug_pathways_and_reactions_by_drug_name_or_drugbank_id.py +63 -0
  498. tooluniverse/tools/drugbank_get_drug_products_by_name_or_drugbank_id.py +63 -0
  499. tooluniverse/tools/drugbank_get_drug_references_by_drug_name_or_drugbank_id.py +63 -0
  500. tooluniverse/tools/drugbank_get_indications_by_drug_name_or_drugbank_id.py +63 -0
  501. tooluniverse/tools/drugbank_get_pharmacology_by_drug_name_or_drugbank_id.py +63 -0
  502. tooluniverse/tools/drugbank_get_safety_by_drug_name_or_drugbank_id.py +63 -0
  503. tooluniverse/tools/drugbank_get_targets_by_drug_name_or_drugbank_id.py +63 -0
  504. tooluniverse/tools/drugbank_links_search.py +67 -0
  505. tooluniverse/tools/drugbank_vocab_filter.py +63 -0
  506. tooluniverse/tools/drugbank_vocab_search.py +67 -0
  507. tooluniverse/tools/embedding_database_add.py +63 -0
  508. tooluniverse/tools/embedding_database_create.py +71 -0
  509. tooluniverse/tools/embedding_database_load.py +63 -0
  510. tooluniverse/tools/embedding_database_search.py +67 -0
  511. tooluniverse/tools/embedding_sync_download.py +63 -0
  512. tooluniverse/tools/embedding_sync_upload.py +71 -0
  513. tooluniverse/tools/enrichr_gene_enrichment_analysis.py +52 -0
  514. tooluniverse/tools/europepmc_disease_target_score.py +52 -0
  515. tooluniverse/tools/eva_disease_target_score.py +52 -0
  516. tooluniverse/tools/eva_somatic_disease_target_score.py +52 -0
  517. tooluniverse/tools/expression_atlas_disease_target_score.py +52 -0
  518. tooluniverse/tools/extract_clinical_trial_adverse_events.py +59 -0
  519. tooluniverse/tools/extract_clinical_trial_outcomes.py +52 -0
  520. tooluniverse/tools/genomics_england_disease_target_score.py +52 -0
  521. tooluniverse/tools/get_HPO_ID_by_phenotype.py +55 -0
  522. tooluniverse/tools/get_albumentations_info.py +44 -0
  523. tooluniverse/tools/get_altair_info.py +44 -0
  524. tooluniverse/tools/get_anndata_info.py +49 -0
  525. tooluniverse/tools/get_arboreto_info.py +46 -0
  526. tooluniverse/tools/get_arxiv_info.py +46 -0
  527. tooluniverse/tools/get_ase_info.py +46 -0
  528. tooluniverse/tools/get_assembly_info_by_pdb_id.py +46 -0
  529. tooluniverse/tools/get_assembly_summary.py +46 -0
  530. tooluniverse/tools/get_astropy_info.py +44 -0
  531. tooluniverse/tools/get_binding_affinity_by_pdb_id.py +46 -0
  532. tooluniverse/tools/get_biopandas_info.py +49 -0
  533. tooluniverse/tools/get_biopython_info.py +49 -0
  534. tooluniverse/tools/get_bioservices_info.py +44 -0
  535. tooluniverse/tools/get_biotite_info.py +49 -0
  536. tooluniverse/tools/get_bokeh_info.py +44 -0
  537. tooluniverse/tools/get_brian2_info.py +44 -0
  538. tooluniverse/tools/get_cartopy_info.py +44 -0
  539. tooluniverse/tools/get_catboost_info.py +44 -0
  540. tooluniverse/tools/get_cellpose_info.py +49 -0
  541. tooluniverse/tools/get_cellrank_info.py +44 -0
  542. tooluniverse/tools/get_cellxgene_census_info.py +46 -0
  543. tooluniverse/tools/get_cftime_info.py +44 -0
  544. tooluniverse/tools/get_chem_comp_audit_info.py +46 -0
  545. tooluniverse/tools/get_chem_comp_charge_and_ambiguity.py +46 -0
  546. tooluniverse/tools/get_chembl_webresource_client_info.py +44 -0
  547. tooluniverse/tools/get_citation_info_by_pdb_id.py +46 -0
  548. tooluniverse/tools/get_clair3_info.py +46 -0
  549. tooluniverse/tools/get_clinical_trial_conditions_and_interventions.py +55 -0
  550. tooluniverse/tools/get_clinical_trial_descriptions.py +52 -0
  551. tooluniverse/tools/get_clinical_trial_eligibility_criteria.py +55 -0
  552. tooluniverse/tools/get_clinical_trial_locations.py +52 -0
  553. tooluniverse/tools/get_clinical_trial_outcome_measures.py +52 -0
  554. tooluniverse/tools/get_clinical_trial_references.py +52 -0
  555. tooluniverse/tools/get_clinical_trial_status_and_dates.py +52 -0
  556. tooluniverse/tools/get_cobra_info.py +46 -0
  557. tooluniverse/tools/get_cobrapy_info.py +46 -0
  558. tooluniverse/tools/get_cooler_info.py +49 -0
  559. tooluniverse/tools/get_core_refinement_statistics.py +46 -0
  560. tooluniverse/tools/get_cryosparc_tools_info.py +46 -0
  561. tooluniverse/tools/get_crystal_growth_conditions_by_pdb_id.py +49 -0
  562. tooluniverse/tools/get_crystallization_ph_by_pdb_id.py +46 -0
  563. tooluniverse/tools/get_crystallographic_properties_by_pdb_id.py +49 -0
  564. tooluniverse/tools/get_cupy_info.py +44 -0
  565. tooluniverse/tools/get_cyvcf2_info.py +49 -0
  566. tooluniverse/tools/get_dask_info.py +44 -0
  567. tooluniverse/tools/get_datamol_info.py +44 -0
  568. tooluniverse/tools/get_datashader_info.py +44 -0
  569. tooluniverse/tools/get_deepchem_info.py +49 -0
  570. tooluniverse/tools/get_deeppurpose_info.py +46 -0
  571. tooluniverse/tools/get_deeptools_info.py +46 -0
  572. tooluniverse/tools/get_deepxde_info.py +49 -0
  573. tooluniverse/tools/get_dendropy_info.py +44 -0
  574. tooluniverse/tools/get_descriptastorus_info.py +46 -0
  575. tooluniverse/tools/get_diffdock_info.py +46 -0
  576. tooluniverse/tools/get_dscribe_info.py +49 -0
  577. tooluniverse/tools/get_ec_number_by_entity_id.py +46 -0
  578. tooluniverse/tools/get_elephant_info.py +44 -0
  579. tooluniverse/tools/get_em_3d_fitting_and_reconstruction_details.py +49 -0
  580. tooluniverse/tools/get_emdb_ids_by_pdb_id.py +46 -0
  581. tooluniverse/tools/get_episcanpy_info.py +44 -0
  582. tooluniverse/tools/get_ete3_info.py +44 -0
  583. tooluniverse/tools/get_faiss_info.py +46 -0
  584. tooluniverse/tools/get_fanc_info.py +46 -0
  585. tooluniverse/tools/get_flask_info.py +46 -0
  586. tooluniverse/tools/get_flowio_info.py +46 -0
  587. tooluniverse/tools/get_flowkit_info.py +46 -0
  588. tooluniverse/tools/get_flowutils_info.py +46 -0
  589. tooluniverse/tools/get_freesasa_info.py +44 -0
  590. tooluniverse/tools/get_galpy_info.py +44 -0
  591. tooluniverse/tools/get_gene_name_by_entity_id.py +46 -0
  592. tooluniverse/tools/get_geopandas_info.py +44 -0
  593. tooluniverse/tools/get_gget_info.py +46 -0
  594. tooluniverse/tools/get_googlesearch_python_info.py +46 -0
  595. tooluniverse/tools/get_gseapy_info.py +49 -0
  596. tooluniverse/tools/get_h5py_info.py +46 -0
  597. tooluniverse/tools/get_harmony_pytorch_info.py +46 -0
  598. tooluniverse/tools/get_hmmlearn_info.py +46 -0
  599. tooluniverse/tools/get_holoviews_info.py +44 -0
  600. tooluniverse/tools/get_host_organism_by_pdb_id.py +46 -0
  601. tooluniverse/tools/get_htmd_info.py +44 -0
  602. tooluniverse/tools/get_hyperopt_info.py +49 -0
  603. tooluniverse/tools/get_igraph_info.py +49 -0
  604. tooluniverse/tools/get_imageio_info.py +44 -0
  605. tooluniverse/tools/get_imbalanced_learn_info.py +44 -0
  606. tooluniverse/tools/get_jcvi_info.py +46 -0
  607. tooluniverse/tools/get_joblib_info.py +44 -0
  608. tooluniverse/tools/get_joint_associated_diseases_by_HPO_ID_list.py +55 -0
  609. tooluniverse/tools/get_khmer_info.py +46 -0
  610. tooluniverse/tools/get_kipoiseq_info.py +44 -0
  611. tooluniverse/tools/get_lifelines_info.py +49 -0
  612. tooluniverse/tools/get_ligand_bond_count_by_pdb_id.py +46 -0
  613. tooluniverse/tools/get_ligand_smiles_by_chem_comp_id.py +49 -0
  614. tooluniverse/tools/get_lightgbm_info.py +44 -0
  615. tooluniverse/tools/get_loompy_info.py +46 -0
  616. tooluniverse/tools/get_mageck_info.py +46 -0
  617. tooluniverse/tools/get_matplotlib_info.py +49 -0
  618. tooluniverse/tools/get_mdanalysis_info.py +46 -0
  619. tooluniverse/tools/get_mdtraj_info.py +44 -0
  620. tooluniverse/tools/get_mne_info.py +44 -0
  621. tooluniverse/tools/get_molfeat_info.py +44 -0
  622. tooluniverse/tools/get_molvs_info.py +44 -0
  623. tooluniverse/tools/get_mordred_info.py +44 -0
  624. tooluniverse/tools/get_msprime_info.py +49 -0
  625. tooluniverse/tools/get_mudata_info.py +49 -0
  626. tooluniverse/tools/get_mutation_annotations_by_pdb_id.py +46 -0
  627. tooluniverse/tools/get_neo_info.py +44 -0
  628. tooluniverse/tools/get_netcdf4_info.py +44 -0
  629. tooluniverse/tools/get_networkx_info.py +46 -0
  630. tooluniverse/tools/get_nglview_info.py +44 -0
  631. tooluniverse/tools/get_nilearn_info.py +44 -0
  632. tooluniverse/tools/get_numba_info.py +46 -0
  633. tooluniverse/tools/get_numpy_info.py +46 -0
  634. tooluniverse/tools/get_oligosaccharide_descriptors_by_entity_id.py +49 -0
  635. tooluniverse/tools/get_openbabel_info.py +49 -0
  636. tooluniverse/tools/get_openchem_info.py +46 -0
  637. tooluniverse/tools/get_opencv_info.py +49 -0
  638. tooluniverse/tools/get_openmm_info.py +49 -0
  639. tooluniverse/tools/get_optlang_info.py +46 -0
  640. tooluniverse/tools/get_optuna_info.py +44 -0
  641. tooluniverse/tools/get_palantir_info.py +44 -0
  642. tooluniverse/tools/get_pandas_info.py +49 -0
  643. tooluniverse/tools/get_patsy_info.py +44 -0
  644. tooluniverse/tools/get_pdbfixer_info.py +46 -0
  645. tooluniverse/tools/get_phenotype_by_HPO_ID.py +46 -0
  646. tooluniverse/tools/get_pillow_info.py +44 -0
  647. tooluniverse/tools/get_plantcv_info.py +46 -0
  648. tooluniverse/tools/get_plip_info.py +46 -0
  649. tooluniverse/tools/get_plotly_info.py +44 -0
  650. tooluniverse/tools/get_poliastro_info.py +46 -0
  651. tooluniverse/tools/get_polymer_entity_annotations.py +49 -0
  652. tooluniverse/tools/get_polymer_entity_count_by_pdb_id.py +46 -0
  653. tooluniverse/tools/get_polymer_entity_ids_by_pdb_id.py +46 -0
  654. tooluniverse/tools/get_polymer_entity_type_by_entity_id.py +49 -0
  655. tooluniverse/tools/get_polymer_molecular_weight_by_entity_id.py +49 -0
  656. tooluniverse/tools/get_poretools_info.py +44 -0
  657. tooluniverse/tools/get_prody_info.py +46 -0
  658. tooluniverse/tools/get_protein_classification_by_pdb_id.py +49 -0
  659. tooluniverse/tools/get_protein_metadata_by_pdb_id.py +46 -0
  660. tooluniverse/tools/get_pubchempy_info.py +44 -0
  661. tooluniverse/tools/get_pybedtools_info.py +49 -0
  662. tooluniverse/tools/get_pybigwig_info.py +46 -0
  663. tooluniverse/tools/get_pydeseq2_info.py +46 -0
  664. tooluniverse/tools/get_pyensembl_info.py +44 -0
  665. tooluniverse/tools/get_pyephem_info.py +44 -0
  666. tooluniverse/tools/get_pyfaidx_info.py +49 -0
  667. tooluniverse/tools/get_pyfasta_info.py +44 -0
  668. tooluniverse/tools/get_pykalman_info.py +46 -0
  669. tooluniverse/tools/get_pyliftover_info.py +49 -0
  670. tooluniverse/tools/get_pymassspec_info.py +46 -0
  671. tooluniverse/tools/get_pymed_info.py +46 -0
  672. tooluniverse/tools/get_pymzml_info.py +46 -0
  673. tooluniverse/tools/get_pypdf2_info.py +46 -0
  674. tooluniverse/tools/get_pyranges_info.py +49 -0
  675. tooluniverse/tools/get_pyrosetta_info.py +44 -0
  676. tooluniverse/tools/get_pysam_info.py +46 -0
  677. tooluniverse/tools/get_pyscenic_info.py +46 -0
  678. tooluniverse/tools/get_pyscf_info.py +46 -0
  679. tooluniverse/tools/get_pyscreener_info.py +46 -0
  680. tooluniverse/tools/get_pytdc_info.py +46 -0
  681. tooluniverse/tools/get_python_libsbml_info.py +46 -0
  682. tooluniverse/tools/get_pytorch_info.py +49 -0
  683. tooluniverse/tools/get_pyvcf_info.py +44 -0
  684. tooluniverse/tools/get_pyvis_info.py +44 -0
  685. tooluniverse/tools/get_qutip_info.py +44 -0
  686. tooluniverse/tools/get_rasterio_info.py +44 -0
  687. tooluniverse/tools/get_rdkit_info.py +46 -0
  688. tooluniverse/tools/get_refinement_resolution_by_pdb_id.py +49 -0
  689. tooluniverse/tools/get_release_deposit_dates_by_pdb_id.py +49 -0
  690. tooluniverse/tools/get_reportlab_info.py +49 -0
  691. tooluniverse/tools/get_requests_info.py +49 -0
  692. tooluniverse/tools/get_ruptures_info.py +46 -0
  693. tooluniverse/tools/get_scanorama_info.py +44 -0
  694. tooluniverse/tools/get_scanpy_info.py +49 -0
  695. tooluniverse/tools/get_schnetpack_info.py +49 -0
  696. tooluniverse/tools/get_scholarly_info.py +46 -0
  697. tooluniverse/tools/get_scikit_bio_info.py +49 -0
  698. tooluniverse/tools/get_scikit_image_info.py +46 -0
  699. tooluniverse/tools/get_scikit_learn_info.py +49 -0
  700. tooluniverse/tools/get_scipy_info.py +46 -0
  701. tooluniverse/tools/get_scrublet_info.py +49 -0
  702. tooluniverse/tools/get_scvelo_info.py +49 -0
  703. tooluniverse/tools/get_scvi_tools_info.py +44 -0
  704. tooluniverse/tools/get_seaborn_info.py +49 -0
  705. tooluniverse/tools/get_sequence_by_pdb_id.py +46 -0
  706. tooluniverse/tools/get_sequence_lengths_by_pdb_id.py +46 -0
  707. tooluniverse/tools/get_sequence_positional_features_by_instance_id.py +49 -0
  708. tooluniverse/tools/get_skopt_info.py +44 -0
  709. tooluniverse/tools/get_souporcell_info.py +46 -0
  710. tooluniverse/tools/get_source_organism_by_pdb_id.py +46 -0
  711. tooluniverse/tools/get_space_group_by_pdb_id.py +46 -0
  712. tooluniverse/tools/get_statsmodels_info.py +49 -0
  713. tooluniverse/tools/get_structure_determination_software_by_pdb_id.py +49 -0
  714. tooluniverse/tools/get_structure_title_by_pdb_id.py +46 -0
  715. tooluniverse/tools/get_structure_validation_metrics_by_pdb_id.py +49 -0
  716. tooluniverse/tools/get_sunpy_info.py +44 -0
  717. tooluniverse/tools/get_sympy_info.py +46 -0
  718. tooluniverse/tools/get_target_cofactor_info.py +46 -0
  719. tooluniverse/tools/get_taxonomy_by_pdb_id.py +46 -0
  720. tooluniverse/tools/get_tiledb_info.py +46 -0
  721. tooluniverse/tools/get_tiledbsoma_info.py +46 -0
  722. tooluniverse/tools/get_torch_geometric_info.py +49 -0
  723. tooluniverse/tools/get_tqdm_info.py +46 -0
  724. tooluniverse/tools/get_trackpy_info.py +46 -0
  725. tooluniverse/tools/get_tskit_info.py +46 -0
  726. tooluniverse/tools/get_umap_learn_info.py +49 -0
  727. tooluniverse/tools/get_uniprot_accession_by_entity_id.py +49 -0
  728. tooluniverse/tools/get_velocyto_info.py +44 -0
  729. tooluniverse/tools/get_viennarna_info.py +49 -0
  730. tooluniverse/tools/get_webpage_text_from_url.py +52 -0
  731. tooluniverse/tools/get_webpage_title.py +49 -0
  732. tooluniverse/tools/get_xarray_info.py +44 -0
  733. tooluniverse/tools/get_xesmf_info.py +44 -0
  734. tooluniverse/tools/get_xgboost_info.py +44 -0
  735. tooluniverse/tools/get_zarr_info.py +44 -0
  736. tooluniverse/tools/gwas_get_association_by_id.py +49 -0
  737. tooluniverse/tools/gwas_get_associations_for_snp.py +67 -0
  738. tooluniverse/tools/gwas_get_associations_for_study.py +55 -0
  739. tooluniverse/tools/gwas_get_associations_for_trait.py +55 -0
  740. tooluniverse/tools/gwas_get_snp_by_id.py +46 -0
  741. tooluniverse/tools/gwas_get_snps_for_gene.py +55 -0
  742. tooluniverse/tools/gwas_get_studies_for_trait.py +75 -0
  743. tooluniverse/tools/gwas_get_study_by_id.py +46 -0
  744. tooluniverse/tools/gwas_get_variants_for_trait.py +55 -0
  745. tooluniverse/tools/gwas_search_associations.py +75 -0
  746. tooluniverse/tools/gwas_search_snps.py +63 -0
  747. tooluniverse/tools/gwas_search_studies.py +75 -0
  748. tooluniverse/tools/humanbase_ppi_analysis.py +67 -0
  749. tooluniverse/tools/mesh_get_subjects_by_pharmacological_action.py +63 -0
  750. tooluniverse/tools/mesh_get_subjects_by_subject_id.py +63 -0
  751. tooluniverse/tools/mesh_get_subjects_by_subject_name.py +63 -0
  752. tooluniverse/tools/mesh_get_subjects_by_subject_scope_or_definition.py +63 -0
  753. tooluniverse/tools/odphp_itemlist.py +49 -0
  754. tooluniverse/tools/odphp_myhealthfinder.py +67 -0
  755. tooluniverse/tools/odphp_outlink_fetch.py +59 -0
  756. tooluniverse/tools/odphp_topicsearch.py +67 -0
  757. tooluniverse/tools/openalex_literature_search.py +67 -0
  758. tooluniverse/tools/reactome_disease_target_score.py +52 -0
  759. tooluniverse/tools/search_clinical_trials.py +67 -0
  760. tooluniverse/tools/visualize_molecule_2d.py +83 -0
  761. tooluniverse/tools/visualize_molecule_3d.py +91 -0
  762. tooluniverse/tools/visualize_protein_structure_3d.py +79 -0
  763. tooluniverse/unified_guideline_tools.py +1210 -0
  764. tooluniverse/unpaywall_tool.py +62 -0
  765. tooluniverse/utils.py +71 -2
  766. tooluniverse/visualization_tool.py +897 -0
  767. tooluniverse/wikidata_sparql_tool.py +60 -0
  768. tooluniverse/zenodo_tool.py +72 -0
  769. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.7.dist-info}/METADATA +12 -2
  770. tooluniverse-1.0.7.dist-info/RECORD +855 -0
  771. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.7.dist-info}/entry_points.txt +4 -0
  772. tooluniverse/test/list_azure_openai_models.py +0 -210
  773. tooluniverse/test/mcp_server_test.py +0 -0
  774. tooluniverse/test/test_admetai_tool.py +0 -370
  775. tooluniverse/test/test_agentic_tool.py +0 -129
  776. tooluniverse/test/test_agentic_tool_azure_models.py +0 -91
  777. tooluniverse/test/test_alphafold_tool.py +0 -108
  778. tooluniverse/test/test_api_key_validation_min.py +0 -64
  779. tooluniverse/test/test_chem_tool.py +0 -37
  780. tooluniverse/test/test_claude_sdk.py +0 -86
  781. tooluniverse/test/test_compose_lieraturereview.py +0 -63
  782. tooluniverse/test/test_compose_tool.py +0 -448
  783. tooluniverse/test/test_dailymed.py +0 -69
  784. tooluniverse/test/test_dataset_tool.py +0 -200
  785. tooluniverse/test/test_disease_target_score.py +0 -56
  786. tooluniverse/test/test_drugbank_filter_examples.py +0 -179
  787. tooluniverse/test/test_efo.py +0 -31
  788. tooluniverse/test/test_enrichr_tool.py +0 -21
  789. tooluniverse/test/test_europe_pmc_tool.py +0 -20
  790. tooluniverse/test/test_fda_adv.py +0 -95
  791. tooluniverse/test/test_fda_drug_labeling.py +0 -91
  792. tooluniverse/test/test_gene_ontology_tools.py +0 -66
  793. tooluniverse/test/test_global_fallback.py +0 -288
  794. tooluniverse/test/test_gwas_tool.py +0 -139
  795. tooluniverse/test/test_hooks_direct.py +0 -219
  796. tooluniverse/test/test_hpa.py +0 -625
  797. tooluniverse/test/test_humanbase_tool.py +0 -20
  798. tooluniverse/test/test_idmap_tools.py +0 -61
  799. tooluniverse/test/test_list_built_in_tools.py +0 -33
  800. tooluniverse/test/test_mcp_server.py +0 -211
  801. tooluniverse/test/test_mcp_tool.py +0 -247
  802. tooluniverse/test/test_medlineplus.py +0 -220
  803. tooluniverse/test/test_odphp_tool.py +0 -166
  804. tooluniverse/test/test_openalex_tool.py +0 -32
  805. tooluniverse/test/test_openrouter_client.py +0 -288
  806. tooluniverse/test/test_opentargets.py +0 -28
  807. tooluniverse/test/test_pubchem_tool.py +0 -116
  808. tooluniverse/test/test_pubtator_tool.py +0 -37
  809. tooluniverse/test/test_rcsb_pdb_tool.py +0 -86
  810. tooluniverse/test/test_reactome.py +0 -54
  811. tooluniverse/test/test_semantic_scholar_tool.py +0 -24
  812. tooluniverse/test/test_software_tools.py +0 -147
  813. tooluniverse/test/test_stdio_hooks.py +0 -285
  814. tooluniverse/test/test_tool_description_optimizer.py +0 -49
  815. tooluniverse/test/test_tool_finder.py +0 -26
  816. tooluniverse/test/test_tool_finder_llm.py +0 -252
  817. tooluniverse/test/test_tools_find.py +0 -195
  818. tooluniverse/test/test_uniprot_tools.py +0 -74
  819. tooluniverse/test/test_uspto_tool.py +0 -72
  820. tooluniverse/test/test_xml_tool.py +0 -113
  821. tooluniverse-1.0.5.dist-info/RECORD +0 -198
  822. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.7.dist-info}/WHEEL +0 -0
  823. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.7.dist-info}/licenses/LICENSE +0 -0
  824. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.7.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_abuse_info_by_drug_name
3
+
4
+ Retrieve information about types of abuse based on the drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_abuse_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve information about types of abuse based on the drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_abuse_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_abuse_info_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_accessories_info_by_drug_name
3
+
4
+ Retrieve information about accessories based on the drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_accessories_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve information about accessories based on the drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_accessories_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_accessories_info_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_active_ingredient_info_by_drug_name
3
+
4
+ Fetch a list of active ingredients in a specific drug product.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_active_ingredient_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Fetch a list of active ingredients in a specific drug product.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_active_ingredient_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_active_ingredient_info_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_adverse_reactions_by_drug_name
3
+
4
+ Retrieve adverse reactions information based on the drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_adverse_reactions_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve adverse reactions information based on the drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_adverse_reactions_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_adverse_reactions_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_alarms_by_drug_name
3
+
4
+ Retrieve alarms based on the specified drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_alarms_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve alarms based on the specified drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_alarms_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_alarms_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_animal_pharmacology_info_by_drug_name
3
+
4
+ Retrieve animal pharmacology and toxicology information based on drug names.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_animal_pharmacology_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve animal pharmacology and toxicology information based on drug names.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_animal_pharmacology_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_animal_pharmacology_info_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_assembly_installation_info_by_drug_name
3
+
4
+ Retrieve assembly or installation instructions based on drug names.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_assembly_installation_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve assembly or installation instructions based on drug names.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_assembly_installation_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_assembly_installation_info_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_boxed_warning_info_by_drug_name
3
+
4
+ Retrieve boxed warning and adverse effects information for a specific drug.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_boxed_warning_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve boxed warning and adverse effects information for a specific drug.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_boxed_warning_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_boxed_warning_info_by_drug_name"]
@@ -0,0 +1,52 @@
1
+ """
2
+ FDA_get_brand_name_generic_name
3
+
4
+ Retrieve the brand name and generic name from generic name or brand name of a drug.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_brand_name_generic_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ *,
15
+ stream_callback: Optional[Callable[[str], None]] = None,
16
+ use_cache: bool = False,
17
+ validate: bool = True,
18
+ ) -> Any:
19
+ """
20
+ Retrieve the brand name and generic name from generic name or brand name of a drug.
21
+
22
+ Parameters
23
+ ----------
24
+ drug_name : str
25
+ The generic name or the brand name of the drug.
26
+ limit : int
27
+ The number of records to return.
28
+ stream_callback : Callable, optional
29
+ Callback for streaming output
30
+ use_cache : bool, default False
31
+ Enable caching
32
+ validate : bool, default True
33
+ Validate parameters
34
+
35
+ Returns
36
+ -------
37
+ Any
38
+ """
39
+ # Handle mutable defaults to avoid B006 linting error
40
+
41
+ return get_shared_client().run_one_function(
42
+ {
43
+ "name": "FDA_get_brand_name_generic_name",
44
+ "arguments": {"drug_name": drug_name, "limit": limit},
45
+ },
46
+ stream_callback=stream_callback,
47
+ use_cache=use_cache,
48
+ validate=validate,
49
+ )
50
+
51
+
52
+ __all__ = ["FDA_get_brand_name_generic_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_calibration_instructions_by_drug_name
3
+
4
+ Retrieve calibration instructions based on the specified drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_calibration_instructions_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve calibration instructions based on the specified drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_calibration_instructions_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_calibration_instructions_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_carcinogenic_mutagenic_fertility_by_drug_name
3
+
4
+ Retrieve carcinogenic, mutagenic, or fertility impairment information based on the drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_carcinogenic_mutagenic_fertility_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve carcinogenic, mutagenic, or fertility impairment information based on the drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_carcinogenic_mutagenic_fertility_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_carcinogenic_mutagenic_fertility_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_child_safety_info_by_drug_name
3
+
4
+ Retrieve child safety information for a specific drug based on its name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_child_safety_info_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve child safety information for a specific drug based on its name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_child_safety_info_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_child_safety_info_by_drug_name"]