tooluniverse 1.0.5__py3-none-any.whl → 1.0.6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of tooluniverse might be problematic. Click here for more details.
- tooluniverse/__init__.py +39 -0
- tooluniverse/agentic_tool.py +82 -12
- tooluniverse/arxiv_tool.py +113 -0
- tooluniverse/biorxiv_tool.py +97 -0
- tooluniverse/core_tool.py +153 -0
- tooluniverse/crossref_tool.py +73 -0
- tooluniverse/data/arxiv_tools.json +87 -0
- tooluniverse/data/biorxiv_tools.json +70 -0
- tooluniverse/data/core_tools.json +105 -0
- tooluniverse/data/crossref_tools.json +70 -0
- tooluniverse/data/dblp_tools.json +73 -0
- tooluniverse/data/doaj_tools.json +94 -0
- tooluniverse/data/fatcat_tools.json +72 -0
- tooluniverse/data/hal_tools.json +70 -0
- tooluniverse/data/medrxiv_tools.json +70 -0
- tooluniverse/data/openaire_tools.json +85 -0
- tooluniverse/data/osf_preprints_tools.json +77 -0
- tooluniverse/data/pmc_tools.json +109 -0
- tooluniverse/data/pubmed_tools.json +65 -0
- tooluniverse/data/unpaywall_tools.json +86 -0
- tooluniverse/data/wikidata_sparql_tools.json +42 -0
- tooluniverse/data/zenodo_tools.json +82 -0
- tooluniverse/dblp_tool.py +62 -0
- tooluniverse/default_config.py +17 -0
- tooluniverse/doaj_tool.py +124 -0
- tooluniverse/execute_function.py +70 -9
- tooluniverse/fatcat_tool.py +66 -0
- tooluniverse/hal_tool.py +77 -0
- tooluniverse/llm_clients.py +286 -0
- tooluniverse/medrxiv_tool.py +97 -0
- tooluniverse/openaire_tool.py +145 -0
- tooluniverse/osf_preprints_tool.py +67 -0
- tooluniverse/pmc_tool.py +181 -0
- tooluniverse/pubmed_tool.py +110 -0
- tooluniverse/smcp.py +109 -79
- tooluniverse/test/test_claude_sdk.py +11 -4
- tooluniverse/unpaywall_tool.py +63 -0
- tooluniverse/wikidata_sparql_tool.py +61 -0
- tooluniverse/zenodo_tool.py +74 -0
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/METADATA +2 -1
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/RECORD +45 -13
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/entry_points.txt +1 -0
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/WHEEL +0 -0
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/licenses/LICENSE +0 -0
- {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/top_level.txt +0 -0
|
@@ -0,0 +1,74 @@
|
|
|
1
|
+
import requests
|
|
2
|
+
from .base_tool import BaseTool
|
|
3
|
+
from .tool_registry import register_tool
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
@register_tool("ZenodoTool")
|
|
7
|
+
class ZenodoTool(BaseTool):
|
|
8
|
+
"""
|
|
9
|
+
Search Zenodo records with optional community filter.
|
|
10
|
+
|
|
11
|
+
Parameters (arguments):
|
|
12
|
+
query (str): Free text query
|
|
13
|
+
max_results (int): Max results (default 10, max 200)
|
|
14
|
+
community (str): Optional community slug to filter
|
|
15
|
+
"""
|
|
16
|
+
|
|
17
|
+
def __init__(self, tool_config):
|
|
18
|
+
super().__init__(tool_config)
|
|
19
|
+
self.base_url = "https://zenodo.org/api/records"
|
|
20
|
+
|
|
21
|
+
def run(self, arguments=None):
|
|
22
|
+
arguments = arguments or {}
|
|
23
|
+
query = arguments.get("query")
|
|
24
|
+
max_results = int(arguments.get("max_results", 10))
|
|
25
|
+
community = arguments.get("community")
|
|
26
|
+
|
|
27
|
+
if not query:
|
|
28
|
+
return {"error": "`query` parameter is required."}
|
|
29
|
+
|
|
30
|
+
params = {
|
|
31
|
+
"q": query,
|
|
32
|
+
"size": max(1, min(max_results, 200)),
|
|
33
|
+
"all_versions": 1,
|
|
34
|
+
}
|
|
35
|
+
if community:
|
|
36
|
+
params["communities"] = community
|
|
37
|
+
|
|
38
|
+
try:
|
|
39
|
+
resp = requests.get(self.base_url, params=params, timeout=20)
|
|
40
|
+
resp.raise_for_status()
|
|
41
|
+
data = resp.json()
|
|
42
|
+
except requests.RequestException as e:
|
|
43
|
+
return {
|
|
44
|
+
"error": "Network/API error calling Zenodo",
|
|
45
|
+
"reason": str(e),
|
|
46
|
+
}
|
|
47
|
+
except ValueError:
|
|
48
|
+
return {"error": "Failed to decode Zenodo response as JSON"}
|
|
49
|
+
|
|
50
|
+
hits = data.get("hits", {}).get("hits", [])
|
|
51
|
+
results = []
|
|
52
|
+
for h in hits:
|
|
53
|
+
md = h.get("metadata", {})
|
|
54
|
+
title = md.get("title")
|
|
55
|
+
creators = [
|
|
56
|
+
c.get("name") for c in md.get("creators", []) if c.get("name")
|
|
57
|
+
]
|
|
58
|
+
publication_date = md.get("publication_date")
|
|
59
|
+
doi = md.get("doi") or h.get("doi")
|
|
60
|
+
url = h.get("links", {}).get("html")
|
|
61
|
+
files = h.get("files", []) or h.get("links", {}).get("latest")
|
|
62
|
+
results.append(
|
|
63
|
+
{
|
|
64
|
+
"title": title,
|
|
65
|
+
"authors": creators,
|
|
66
|
+
"date": publication_date,
|
|
67
|
+
"doi": doi,
|
|
68
|
+
"url": url,
|
|
69
|
+
"files": files,
|
|
70
|
+
"source": "Zenodo",
|
|
71
|
+
}
|
|
72
|
+
)
|
|
73
|
+
|
|
74
|
+
return results
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: tooluniverse
|
|
3
|
-
Version: 1.0.
|
|
3
|
+
Version: 1.0.6
|
|
4
4
|
Summary: A comprehensive collection of scientific tools for Agentic AI, offering integration with the ToolUniverse SDK and MCP Server to support advanced scientific workflows.
|
|
5
5
|
Author-email: Shanghua Gao <shanghuagao@gmail.com>
|
|
6
6
|
Project-URL: Homepage, https://github.com/mims-harvard/ToolUniverse
|
|
@@ -47,6 +47,7 @@ Requires-Dist: pre-commit>=2.0; extra == "dev"
|
|
|
47
47
|
Provides-Extra: docs
|
|
48
48
|
Requires-Dist: sphinx>=4.0; extra == "docs"
|
|
49
49
|
Requires-Dist: furo>=2024.8.6; extra == "docs"
|
|
50
|
+
Requires-Dist: pydata-sphinx-theme>=0.15.0; extra == "docs"
|
|
50
51
|
Requires-Dist: sphinx-rtd-theme>=1.0; extra == "docs"
|
|
51
52
|
Requires-Dist: myst-parser>=0.18; extra == "docs"
|
|
52
53
|
Requires-Dist: linkify-it-py>=2.0.0; extra == "docs"
|
|
@@ -1,48 +1,61 @@
|
|
|
1
|
-
tooluniverse/__init__.py,sha256=
|
|
1
|
+
tooluniverse/__init__.py,sha256=MTyhjACJmheyLCoaMpmBXINi_CVj8DanOO8ogZbOQpk,15926
|
|
2
2
|
tooluniverse/admetai_tool.py,sha256=nEfq7dwvFqjDryKv3nivGoBSRap6LT7_m76iMu72Q6E,3009
|
|
3
|
-
tooluniverse/agentic_tool.py,sha256=
|
|
3
|
+
tooluniverse/agentic_tool.py,sha256=0d3Z29lh2fY466Nd8BlbCOYQL5SklkNsZp8sflL_kM4,23969
|
|
4
4
|
tooluniverse/alphafold_tool.py,sha256=NkKQttC0MfuetCTTcWTFEG2MdhyKwy3jb5TR4odiqAw,4658
|
|
5
|
+
tooluniverse/arxiv_tool.py,sha256=_J9q_Z4o3DGXtPKMVIiYgZPbioZdA4wzMe7rsfB2u-Q,3670
|
|
5
6
|
tooluniverse/base_tool.py,sha256=uA-wGrs1drEJJbIp24YfWWWWfNGeMqEQo1tI6r3csEg,5664
|
|
7
|
+
tooluniverse/biorxiv_tool.py,sha256=GYyVFqSNEWDwscDrzLEg7IpiyUla7Zp_v-mAle8uXYI,3170
|
|
6
8
|
tooluniverse/boltz_tool.py,sha256=Kfcymeu6FRRpWLw7dWhEON4PUBTsHuBiTAPJlYH5ZGs,7930
|
|
7
9
|
tooluniverse/chem_tool.py,sha256=tJusjamWNp0x8Ke-cvVgKB7-clvD6LXTaXA0Q0fqQv4,8336
|
|
8
10
|
tooluniverse/compose_tool.py,sha256=mK4yqo1rsxY9lWlGEyJfNqgEfjQN9ITDkW2telI1ZJM,13851
|
|
11
|
+
tooluniverse/core_tool.py,sha256=Gvby-W95Us9HIqIrH0FqrrT2ytmhpAtGWUlK6ESwGMM,5098
|
|
12
|
+
tooluniverse/crossref_tool.py,sha256=RzJQLDbsEWianNVLhkJkzF2dnHWwIImy8sNaE6Lr1TM,2362
|
|
9
13
|
tooluniverse/ctg_tool.py,sha256=3nR_F-YGpxVmTa6u5xi-mrTmLSH7OBehP4EJo-CQS0Y,46053
|
|
10
14
|
tooluniverse/custom_tool.py,sha256=w2LMMRT82byxSNYPBKmuEJ2lbKktDJt_iW0Ew24M5VY,2701
|
|
11
15
|
tooluniverse/dailymed_tool.py,sha256=sxIs0xYwX0CVlkhHaPwvGV-Oo1OW2tvsWZypAWujt9k,3800
|
|
12
16
|
tooluniverse/dataset_tool.py,sha256=cmcCz_SFs7V78EZDNLesnQ2Qe9fVz1jOLghrpwe8hM8,11371
|
|
13
|
-
tooluniverse/
|
|
17
|
+
tooluniverse/dblp_tool.py,sha256=4rDbb5OOzwHw4Y8FbHicCCpu5ZDAxa44EV9wzMBnu54,1835
|
|
18
|
+
tooluniverse/default_config.py,sha256=s69R1DwOvAX7bAAmi06gt5VCX76FVuwuqQEgIXKOVFI,8529
|
|
19
|
+
tooluniverse/doaj_tool.py,sha256=e7iN7X9ihETyCZivz0IBG6Dpo5Mr15t6CAnrZm1t8gs,4380
|
|
14
20
|
tooluniverse/efo_tool.py,sha256=J4tjPFlNa9KhmQTEToBZN-m8jMuF1IKf2yQb1dyTeXI,1394
|
|
15
21
|
tooluniverse/embedding_database.py,sha256=ua-yIyv3dPq2GHdyZmiwZyaUlkKYyV3nslB4H9asvDo,24682
|
|
16
22
|
tooluniverse/embedding_sync.py,sha256=Cq3g64MjNXXpiImrzPMNsCTvGZeEI9009OlHOD3EloI,14669
|
|
17
23
|
tooluniverse/enrichr_tool.py,sha256=YXuHwoG_Hi-kUWK7cY_X21b5pbqoREdG7fJxKq050Jg,9472
|
|
18
24
|
tooluniverse/europe_pmc_tool.py,sha256=aYTkDE_KMnpkYYMG5ojYZQ1QYsYB_Msf3pvNwY1Zz6w,1645
|
|
19
|
-
tooluniverse/execute_function.py,sha256=
|
|
25
|
+
tooluniverse/execute_function.py,sha256=dEvGQpFMXEjQmLyMHcHYBqgDR4JWfHMz265evbIceu4,85004
|
|
20
26
|
tooluniverse/extended_hooks.py,sha256=1Cg0rETh6_D21YFVqD-FhL7y4inZAGyQ6vMtHyugueg,15376
|
|
27
|
+
tooluniverse/fatcat_tool.py,sha256=t_fknhKlKxNBcNHWQkL7ZZUrI28dDdKlMsJJ0eXw-x4,2052
|
|
21
28
|
tooluniverse/gene_ontology_tool.py,sha256=l89XYdBEBm3eN3dG0lR4oV01H16_9IUB6a2c7W_c7Lg,7180
|
|
22
29
|
tooluniverse/graphql_tool.py,sha256=y7ztNyb9hn4OdSGKhLsHev_snkNgbAwJZL8ZGHm0LEk,8980
|
|
23
30
|
tooluniverse/gwas_tool.py,sha256=hq4VhB93DhczZo0xRGjGS9AtdKWL0O_XQy3eoV_fi8E,12351
|
|
31
|
+
tooluniverse/hal_tool.py,sha256=Vin48j0fgPecEAttZjCW1kHm0ZTfDDB0ti85SwdmyO0,2487
|
|
24
32
|
tooluniverse/hpa_tool.py,sha256=siRA0usQ0Rggloy3VL1b56QlytabndXS8Xzc9H3uWs8,64998
|
|
25
33
|
tooluniverse/humanbase_tool.py,sha256=xojNboYvFrW_LAzOzKaexp6tvyGSbUazpMfOvX5ETXY,15006
|
|
26
|
-
tooluniverse/llm_clients.py,sha256=
|
|
34
|
+
tooluniverse/llm_clients.py,sha256=xwsqzWVvirGQSVZjfGErnte1HhcKKuOJR9VTOfpOPDE,31489
|
|
27
35
|
tooluniverse/logging_config.py,sha256=SWM8TCrv0RZJZbC8NNwy8h04V9BvqSVyzwJFcW43eFI,7212
|
|
28
36
|
tooluniverse/mcp_client_tool.py,sha256=R2WWAbnjzCFEKfeddTvtZTSZqtnvKRayV2ha2xdV9EU,28741
|
|
29
37
|
tooluniverse/mcp_integration.py,sha256=9VtFDFbcVIuKO_sd1gFrOd-R0r6uxlYRjdsOKiqV1zs,13912
|
|
30
38
|
tooluniverse/mcp_tool_registry.py,sha256=H9jCzhywtkgm7I4d-zj0eV9Xmt1ZUXubX0XiPGL5pUs,31795
|
|
31
39
|
tooluniverse/medlineplus_tool.py,sha256=__D7W2Khl05WllMnoV4Owv3pyl5EXS1lzEJmAE7PbD0,13214
|
|
40
|
+
tooluniverse/medrxiv_tool.py,sha256=xfIXS91cmwlmqy-OIq-r9rTnX6g442Ujco0U-_8LiSU,3189
|
|
32
41
|
tooluniverse/odphp_tool.py,sha256=xOuXOoZC55cWfX-rYfPY6E5h6gCMd4yO1u_R1oBpoMk,8897
|
|
42
|
+
tooluniverse/openaire_tool.py,sha256=Y9qgtY-uh61S3ZKQ6lG_R9j0ihw59yUorDByWJ-GtnE,4838
|
|
33
43
|
tooluniverse/openalex_tool.py,sha256=cR6K4ycFTarXxkNM_Rm2ULNu3K4QJX0ukK-7YVZiLcg,8066
|
|
34
44
|
tooluniverse/openfda_adv_tool.py,sha256=t5kffba0iNDVtFHYPtfLW8ql4dKLaWwdcFnE9cNmNWE,10168
|
|
35
45
|
tooluniverse/openfda_tool.py,sha256=AetafmFr1IygGAL8p1-URsNahVdN52tN0FvToTlkcMw,27425
|
|
46
|
+
tooluniverse/osf_preprints_tool.py,sha256=GM69WNLKkUOOtepbpasKDOEInBNHhr8zIYYk7EHgiDc,2192
|
|
36
47
|
tooluniverse/output_hook.py,sha256=2f95WFXA9DC6-HV4uJb8ZJAF-VmlmM2DPVvG2up_4EE,46279
|
|
37
48
|
tooluniverse/package_tool.py,sha256=Ri-TPc_jTY3olHjPsMkEe2z45vknM7yynjtMXkh3Le8,8294
|
|
49
|
+
tooluniverse/pmc_tool.py,sha256=MHFBG1hiYjH3qEnrcjlGaZOkv5yNxQiAZ9XDRrf-XDI,6338
|
|
38
50
|
tooluniverse/pubchem_tool.py,sha256=14C_5uz0RNzv5HaSAXHlq13TZLtlkhmJhr7RrjI91Yk,6415
|
|
51
|
+
tooluniverse/pubmed_tool.py,sha256=iiN7KTARMS02yzOLzgXKpHxa5GAeeyWfQnb8ql3wD70,3428
|
|
39
52
|
tooluniverse/pubtator_tool.py,sha256=WdFufeT3hY2lCq6vb9SLF44UYJ48PiZ1mf4bSfpI7mg,7151
|
|
40
53
|
tooluniverse/rcsb_pdb_tool.py,sha256=8N6bvlD2KIHfNum_FvbXwIa96mKvHorno5ZdjAHgmrc,1550
|
|
41
54
|
tooluniverse/reactome_tool.py,sha256=ngmJXCcQfsu5d8XcX258ZHW4DIBi45sSjYNwUBk8nxo,4481
|
|
42
55
|
tooluniverse/remote_tool.py,sha256=ywb5xaJBqOT38_r5FBVoF3QFQDcLvfOH5AQrT-g7Fcs,3368
|
|
43
56
|
tooluniverse/restful_tool.py,sha256=H7alq_vO3G4iVgZIZrrWh9vq2ForJN52Fl7_QOq7yaM,4409
|
|
44
57
|
tooluniverse/semantic_scholar_tool.py,sha256=3gMHF-ReyNsP74oV7LzphhkhjYOX44F4JpnvIafaWPY,1970
|
|
45
|
-
tooluniverse/smcp.py,sha256=
|
|
58
|
+
tooluniverse/smcp.py,sha256=U2M1RMx8r98sSihhk42swQ3y3fCRnS8HfBIinijp4t4,106032
|
|
46
59
|
tooluniverse/smcp_server.py,sha256=S-l8Z-wHrxTBrNZ3CdDfkV9Y0Y_BmD8UcF7NUQUX5uw,34316
|
|
47
60
|
tooluniverse/tool_finder_embedding.py,sha256=O0WMCT6z7a_pDDew04QtpyPk_qzfGCX_647rsrBs0ug,11239
|
|
48
61
|
tooluniverse/tool_finder_keyword.py,sha256=_Nt4-C1RranoywTk8vi6MePWPoNqFwOhafMDiTYl_SU,23480
|
|
@@ -50,10 +63,13 @@ tooluniverse/tool_finder_llm.py,sha256=W63BDow6ioWQJgkpuhS3f0f4lb48uT_Jzc_bTqhBK
|
|
|
50
63
|
tooluniverse/tool_graph_web_ui.py,sha256=68s1MPXTcT6bzdFfuat9gvSNjSgwHxNC-TztfH3raeQ,27987
|
|
51
64
|
tooluniverse/tool_registry.py,sha256=1EUAUYwX0De9Ld2O020cEg1hDlAF-mTJ946datMOg5s,14558
|
|
52
65
|
tooluniverse/uniprot_tool.py,sha256=oIy8O0tHQWgb1rAtxTGZfXEVJLLRM5fFVe2SVc5OpNI,6231
|
|
66
|
+
tooluniverse/unpaywall_tool.py,sha256=z5Z0kuY9tMlfDMbHS0nndg23WOl31CeYL2mOQJIUt3g,2071
|
|
53
67
|
tooluniverse/url_tool.py,sha256=8dY1Uoq0VHPwaBN7Z3Kw9ceNyCPO61FLexAmhHsKCUI,9018
|
|
54
68
|
tooluniverse/uspto_tool.py,sha256=lelrwFaMen_0O3U86UoY-xcZ5pLH9Cwk1kY5iYD1AcE,8992
|
|
55
69
|
tooluniverse/utils.py,sha256=T0rXjsqCfhz-yvRxKvSCzGCMLaKv7VcezFEhV9sN-18,16865
|
|
70
|
+
tooluniverse/wikidata_sparql_tool.py,sha256=CVrXP4SyvEJUBAXxjQP5c42cpJkC1Ar-IbiaIC5qjNQ,1987
|
|
56
71
|
tooluniverse/xml_tool.py,sha256=ynv6NEU-QTSliB9P02qnHxoxIGeRu7Bb-KHOmR0pN24,14671
|
|
72
|
+
tooluniverse/zenodo_tool.py,sha256=_bE8nTWzPK_OBw00Y9I0lAyEy7PuyDieUdzakwmVSZw,2366
|
|
57
73
|
tooluniverse/compose_scripts/__init__.py,sha256=8e9aVruvvUQxLSuPEgcrljS-f1fJbnIwB6XKb4ZeWn0,41
|
|
58
74
|
tooluniverse/compose_scripts/biomarker_discovery.py,sha256=Im7SO1boySOVAcOz5JtuNw5Uo43i4SLBVgDRyXUke2k,13173
|
|
59
75
|
tooluniverse/compose_scripts/comprehensive_drug_discovery.py,sha256=k5aoTkC5bTneM9asOuYKz0dCwewVv2kWOXUdS_CAoOc,8588
|
|
@@ -70,36 +86,49 @@ tooluniverse/data/admetai_tools.json,sha256=08LCNSCZJxL6ZuPF1mVfbdlh9f2X5tnEwIYU
|
|
|
70
86
|
tooluniverse/data/adverse_event_tools.json,sha256=EDU_X8r4YtMnVt7SJpyimdo3FlcSNFSdvckWLShDODA,12752
|
|
71
87
|
tooluniverse/data/agentic_tools.json,sha256=uRaWGpxL7DyS5ufiP6tHrAATL-uIqVzZhDK4VXLu81Y,103250
|
|
72
88
|
tooluniverse/data/alphafold_tools.json,sha256=--JO9z9fQM95t5dphrBoKKr28HKWg7iQOUm1hQYhEOk,10628
|
|
89
|
+
tooluniverse/data/arxiv_tools.json,sha256=dW0R9Cq5pfrlQb68gus6aTpf7e9EfLdp7GkYU_vrYVY,3261
|
|
90
|
+
tooluniverse/data/biorxiv_tools.json,sha256=nNsnOcqGHrhO-avRvFTtyrNyOfiPSrga3X51lbf3OSo,2510
|
|
73
91
|
tooluniverse/data/boltz_tools.json,sha256=_pMSRBkO3uj4vjYnQ7H6qbZFa4rzc9Looj6zHRyIkMg,303
|
|
74
92
|
tooluniverse/data/chembl_tools.json,sha256=aQfFyFlUNz_y9ZTO3dNje4QGhqt7rLv6j5YdMJR2-x8,747
|
|
75
93
|
tooluniverse/data/clinicaltrials_gov_tools.json,sha256=_3NphPP_9cLviktCNnfsoSo_EHIkKA4lDTmuSycQJ58,16102
|
|
76
94
|
tooluniverse/data/compose_tools.json,sha256=9l4FbSx8s0V6-k_6-5Fr2-Z_LDZ_WnxZke_UZxZk1g8,10913
|
|
95
|
+
tooluniverse/data/core_tools.json,sha256=D34alhGVXop0fX5BRhHCbRSvGIFsElga7EX_PBs6UR4,4326
|
|
96
|
+
tooluniverse/data/crossref_tools.json,sha256=0GpswzjtCU22LHMsqO0wMWSSjt0MBwW4IxuctaG5NV8,2696
|
|
77
97
|
tooluniverse/data/dailymed_tools.json,sha256=F7zSeK6MM9eGKUXZpyeVNFD1UkOkd-0OoxmTlgnEffg,2059
|
|
78
98
|
tooluniverse/data/dataset_tools.json,sha256=MiJKlKTEFRILbhy2DPnhG_9upFu5GJ2-YCu9HarjcD8,29506
|
|
99
|
+
tooluniverse/data/dblp_tools.json,sha256=e_lfvSEu1lqStQ6LTUyz8ei4FQPP6unXS4KP-4tRNMM,2752
|
|
79
100
|
tooluniverse/data/disease_target_score_tools.json,sha256=xhU5bigeNa2FSn0bqVPArXVid6lkwfFBDpD2xbSGisc,23199
|
|
101
|
+
tooluniverse/data/doaj_tools.json,sha256=GjuxQFnnNEACOPBTFkZc-NyDMqpgSXYHLlocQkk0a3Y,3573
|
|
80
102
|
tooluniverse/data/efo_tools.json,sha256=qsEElKp1Z4EX09OD4r1ETcw6jT2t_w32SlDz-v8RyDc,564
|
|
81
103
|
tooluniverse/data/embedding_tools.json,sha256=7kTjEAfnVmvixfyk4rgJRXpq-ZDsvEKTZhi0VHanqfI,12979
|
|
82
104
|
tooluniverse/data/enrichr_tools.json,sha256=kouTYguewNXMSmGwvEDVU9aG8ka6Mg7bRMIVr0gNmN8,1312
|
|
83
105
|
tooluniverse/data/europe_pmc_tools.json,sha256=gEBy1j-VjUPs_tdfWhR-5JMrfc81iQuiR29SshHz-vU,959
|
|
84
106
|
tooluniverse/data/expert_feedback_tools.json,sha256=Uq3pit2dvffLWl01ycJiFh7NSMVE9Ol7qUMWjGwUvYw,453
|
|
107
|
+
tooluniverse/data/fatcat_tools.json,sha256=DwBV36VoRy9km2Td_3Yi-OhzTYG9VleO3s6IRsJ1NgE,2671
|
|
85
108
|
tooluniverse/data/fda_drug_adverse_event_tools.json,sha256=uGeUs0cyHo1AXconRmS8djFsYJHNsAjJpbZW417Fj4I,24064
|
|
86
109
|
tooluniverse/data/fda_drug_labeling_tools.json,sha256=Shp6yf8C5YMIfUrweCmXJL5DH8ZndnM3gP519pY5iaI,224728
|
|
87
110
|
tooluniverse/data/fda_drugs_with_brand_generic_names_for_tool.py,sha256=TlXXiMI1FUwXxX2pZW0G4vrZ5_10Jg03qDnL8BzUZXY,6009537
|
|
88
111
|
tooluniverse/data/finder_tools.json,sha256=e-3-yXL4R7sV6g4LOhIc9bSoiJLY53qx8w-guWe5eks,5974
|
|
89
112
|
tooluniverse/data/gene_ontology_tools.json,sha256=BG7E5sxXJy2XYbNjsELptk8J2iZf0CqlgzjyHtPX-XU,4252
|
|
90
113
|
tooluniverse/data/gwas_tools.json,sha256=G2Z7kKPK5UsqNot3sJnP8RmeEY2wjfOMonY19Bwf0zM,51777
|
|
114
|
+
tooluniverse/data/hal_tools.json,sha256=vYgpvOJ5QMlUgNuLQW6wzj6wziC-HkXIUNabgg6o5fI,2508
|
|
91
115
|
tooluniverse/data/hpa_tools.json,sha256=mNpWuDQOlnJEbhDq4tDl_Nhq5PEXNSitx4Jjm09PkW0,17582
|
|
92
116
|
tooluniverse/data/humanbase_tools.json,sha256=WQ8rsNd0CdAg8UM2RAFs9u2lHO1rAXVQUi6Fs7JQGfk,2493
|
|
93
117
|
tooluniverse/data/idmap_tools.json,sha256=ROokr0F2Tws9GE6qG42BYAKxJ9md0xrQ-NgLoXNGYoA,3186
|
|
94
118
|
tooluniverse/data/mcp_client_tools_example.json,sha256=gnubP44yiaRp1LRHhREsa9t934svLzxBhB-vnH4hM_g,3986
|
|
95
119
|
tooluniverse/data/mcpautoloadertool_defaults.json,sha256=I1Z6Xnno6BRX7u9Ec4LlXlz-384GWpaBafPVHsqTr_c,998
|
|
96
120
|
tooluniverse/data/medlineplus_tools.json,sha256=Jxy4Mqw6l6VYKfQ1sS54iR5SdDJFqVSryPHAgUWV5MQ,7236
|
|
121
|
+
tooluniverse/data/medrxiv_tools.json,sha256=zjkJhfPDEPJ5bf-T4Wt91XWcqGVJd6GOz3G-yzoU9-0,2508
|
|
97
122
|
tooluniverse/data/monarch_tools.json,sha256=-uyhy-FlYBCmP0_biespZcuBHwcvOPmxX4gNYnTmgMU,3568
|
|
98
123
|
tooluniverse/data/odphp_tools.json,sha256=OYmtX7Ux4-9lwz7vbUkKG1g9nQXqAPHgPufdSuHavdM,14602
|
|
124
|
+
tooluniverse/data/openaire_tools.json,sha256=o_QfhY6MiEgTMEOdc1LX53SWjkqOmS_6yuoXUmqFvt8,3338
|
|
99
125
|
tooluniverse/data/openalex_tools.json,sha256=6y-1rqRAwR8dzxT3E5sroTdzfl4OVJMxdLSPcIBb-vQ,1736
|
|
100
126
|
tooluniverse/data/opentarget_tools.json,sha256=IZGLUbQWC--u_DSNoGGMtI9V9YFxucHB1ESqglJWCY8,67795
|
|
127
|
+
tooluniverse/data/osf_preprints_tools.json,sha256=yh_GZu1NVNLoECLLUXQ7IzyXzNixt6Be-bmfqt30Hlg,2896
|
|
101
128
|
tooluniverse/data/output_summarization_tools.json,sha256=9BxZAkzexsDp8jGMKUHW3LIRThZjleRjYRvk0y-bxEs,3944
|
|
129
|
+
tooluniverse/data/pmc_tools.json,sha256=mNQFFBdHhfwIWgAYYNWpnOaTUxakAUNxfvrlI-v3Gys,4554
|
|
102
130
|
tooluniverse/data/pubchem_tools.json,sha256=_q3sov5n2fGhBT43gzfqSjsjT1uc_itiF9HT2UV3jFU,12695
|
|
131
|
+
tooluniverse/data/pubmed_tools.json,sha256=Tuwr48VX0a2CpnKJmnv_lrfZQwM0LTYDrDU9k6wLrp0,2420
|
|
103
132
|
tooluniverse/data/pubtator_tools.json,sha256=WkcP3DFlC6EcL9zf2KMrDITC0_fYPNTu60by0RJBdVI,2511
|
|
104
133
|
tooluniverse/data/rcsb_pdb_tools.json,sha256=gKY8Y9QDN4-3ILc2KFLGdPFXG1M9LhXMAPFQtwnP7Bg,47767
|
|
105
134
|
tooluniverse/data/reactome_tools.json,sha256=h8Ubkllr4LMFc8UPUFQ8SZf_-wdWdh_NaHAKhx31Db0,557
|
|
@@ -109,10 +138,13 @@ tooluniverse/data/tool_composition_tools.json,sha256=kx9S7TSQqkQb4n13WuW204NL9Zq
|
|
|
109
138
|
tooluniverse/data/toolfinderkeyword_defaults.json,sha256=bydTVd0IUSDiilNQ6kZU-cn4lPqOfInfUAxhh8yMXqY,1050
|
|
110
139
|
tooluniverse/data/txagent_client_tools.json,sha256=GdQk5H6uP_Uj9Ejz3nMdzNhZJV42t75aiRW8oWtkzRw,409
|
|
111
140
|
tooluniverse/data/uniprot_tools.json,sha256=eiRlXBTB3jEboF2eDFFgvI14gDuHD0snOr-sm5ouQfo,8046
|
|
141
|
+
tooluniverse/data/unpaywall_tools.json,sha256=7ciTSVOeaCwmIA88Lrm_t17mNDqCxPZMtI1pHYsaRco,3123
|
|
112
142
|
tooluniverse/data/url_fetch_tools.json,sha256=KgypHQxze95a04-BeFc36bgvthGBACwF5hYDCNf_-tc,3157
|
|
113
143
|
tooluniverse/data/uspto_downloader_tools.json,sha256=hMHwvP_hvuFg-upZAAXufywYKx031iQ0xuMyHfzu0uA,349
|
|
114
144
|
tooluniverse/data/uspto_tools.json,sha256=S6unaJGVrH6wRjXTOwTXvumzv4bCek1Kf07tSStZjLM,32073
|
|
145
|
+
tooluniverse/data/wikidata_sparql_tools.json,sha256=EUipq3cpfhBNLPioDD11xJ26eF3eFRUtRJ0RCHxC03E,2045
|
|
115
146
|
tooluniverse/data/xml_tools.json,sha256=tt7SFQB8DIKAtPPTabJgQ4ccW-UcDyvKiy2mRtUO_k0,147637
|
|
147
|
+
tooluniverse/data/zenodo_tools.json,sha256=EsW25-3I2e8A4gG05Pkc5SoptHeu9w5yjptaIoytD8s,3117
|
|
116
148
|
tooluniverse/data/packages/bioinformatics_core_tools.json,sha256=ScG9555zR0caPiLlmCnBlsOM9s5sgYMKJrvWnf7niaY,164753
|
|
117
149
|
tooluniverse/data/packages/categorized_tools.txt,sha256=NweDa6MbgS_4480RuNk-sw9LaxyA05VkzSgIRfvYkLI,4823
|
|
118
150
|
tooluniverse/data/packages/cheminformatics_tools.json,sha256=aiyLjU9E4d2UaJ8A8AGxfcQ52TIMaO_79N1QVMHnes4,30845
|
|
@@ -149,7 +181,7 @@ tooluniverse/test/test_agentic_tool_azure_models.py,sha256=2T3R_rm2jZ-tVe8b_3RI2
|
|
|
149
181
|
tooluniverse/test/test_alphafold_tool.py,sha256=Hj-ITZqWO-U8OVNveVtmLVACiOAzwUYh1COwjcIaxrQ,3459
|
|
150
182
|
tooluniverse/test/test_api_key_validation_min.py,sha256=esWQywax1fSLvinZ_LXbLVVqUxstqmlkIV0ZfAj7sPg,1976
|
|
151
183
|
tooluniverse/test/test_chem_tool.py,sha256=N_ARBvouWyJMgWL1yMXSg1w407fBB-CZxJysFVRE6uY,1589
|
|
152
|
-
tooluniverse/test/test_claude_sdk.py,sha256=
|
|
184
|
+
tooluniverse/test/test_claude_sdk.py,sha256=q1Sy2G8K4tR112G68l8WOpZ3PxOUaBQnLQxGu05m2sY,2865
|
|
153
185
|
tooluniverse/test/test_compose_lieraturereview.py,sha256=qNkgXHXJm7Ekiw9e0mcgtqs1z5c-MeE3qy0RoexF9Tg,1956
|
|
154
186
|
tooluniverse/test/test_compose_tool.py,sha256=reRhUWhSuWwuorWF0jbDQHhIEd14UTq_GDSe0Wwl0v4,16607
|
|
155
187
|
tooluniverse/test/test_dailymed.py,sha256=Dttqr6XNhFQaT34mg2TimQYaePN6aOn8BsOMj26Vm6w,2594
|
|
@@ -190,9 +222,9 @@ tooluniverse/test/test_tools_find.py,sha256=vP9EV04iXXmejoY2rDhEM0Yc9uHEO2qEmd8s
|
|
|
190
222
|
tooluniverse/test/test_uniprot_tools.py,sha256=V0x7aQjjlE-wS5alFWviHNwC3saHiEE5pMMqAcbokaw,2582
|
|
191
223
|
tooluniverse/test/test_uspto_tool.py,sha256=y2VQBMbiHCTAmvXhBosHrc1innstUl9UMWNoPaBv-RY,2311
|
|
192
224
|
tooluniverse/test/test_xml_tool.py,sha256=tx-w_psZ801C2kM6aDbBzR8QV3Vgu1p2zP6zExhjpVs,3602
|
|
193
|
-
tooluniverse-1.0.
|
|
194
|
-
tooluniverse-1.0.
|
|
195
|
-
tooluniverse-1.0.
|
|
196
|
-
tooluniverse-1.0.
|
|
197
|
-
tooluniverse-1.0.
|
|
198
|
-
tooluniverse-1.0.
|
|
225
|
+
tooluniverse-1.0.6.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
|
|
226
|
+
tooluniverse-1.0.6.dist-info/METADATA,sha256=FrR47FMPn9g_BeqF9ZTddJdpRGRE1AhPk9i6dYFo7Ew,20382
|
|
227
|
+
tooluniverse-1.0.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
|
|
228
|
+
tooluniverse-1.0.6.dist-info/entry_points.txt,sha256=-2zG8SrMsIU4k3V2sGxq94uesFUVm9L8OEcGY9NgY1k,689
|
|
229
|
+
tooluniverse-1.0.6.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
|
|
230
|
+
tooluniverse-1.0.6.dist-info/RECORD,,
|
|
@@ -7,3 +7,4 @@ tooluniverse-mcp-claude = tooluniverse.smcp_server:run_stdio_server
|
|
|
7
7
|
tooluniverse-smcp = tooluniverse.smcp_server:run_smcp_server
|
|
8
8
|
tooluniverse-smcp-server = tooluniverse.smcp_server:run_http_server
|
|
9
9
|
tooluniverse-smcp-stdio = tooluniverse.smcp_server:run_stdio_server
|
|
10
|
+
tooluniverse-wide-research = tooluniverse.web_tools.literature_search_ui.simple_app:main
|
|
File without changes
|
|
File without changes
|
|
File without changes
|