tooluniverse 1.0.5__py3-none-any.whl → 1.0.6__py3-none-any.whl

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Files changed (45) hide show
  1. tooluniverse/__init__.py +39 -0
  2. tooluniverse/agentic_tool.py +82 -12
  3. tooluniverse/arxiv_tool.py +113 -0
  4. tooluniverse/biorxiv_tool.py +97 -0
  5. tooluniverse/core_tool.py +153 -0
  6. tooluniverse/crossref_tool.py +73 -0
  7. tooluniverse/data/arxiv_tools.json +87 -0
  8. tooluniverse/data/biorxiv_tools.json +70 -0
  9. tooluniverse/data/core_tools.json +105 -0
  10. tooluniverse/data/crossref_tools.json +70 -0
  11. tooluniverse/data/dblp_tools.json +73 -0
  12. tooluniverse/data/doaj_tools.json +94 -0
  13. tooluniverse/data/fatcat_tools.json +72 -0
  14. tooluniverse/data/hal_tools.json +70 -0
  15. tooluniverse/data/medrxiv_tools.json +70 -0
  16. tooluniverse/data/openaire_tools.json +85 -0
  17. tooluniverse/data/osf_preprints_tools.json +77 -0
  18. tooluniverse/data/pmc_tools.json +109 -0
  19. tooluniverse/data/pubmed_tools.json +65 -0
  20. tooluniverse/data/unpaywall_tools.json +86 -0
  21. tooluniverse/data/wikidata_sparql_tools.json +42 -0
  22. tooluniverse/data/zenodo_tools.json +82 -0
  23. tooluniverse/dblp_tool.py +62 -0
  24. tooluniverse/default_config.py +17 -0
  25. tooluniverse/doaj_tool.py +124 -0
  26. tooluniverse/execute_function.py +70 -9
  27. tooluniverse/fatcat_tool.py +66 -0
  28. tooluniverse/hal_tool.py +77 -0
  29. tooluniverse/llm_clients.py +286 -0
  30. tooluniverse/medrxiv_tool.py +97 -0
  31. tooluniverse/openaire_tool.py +145 -0
  32. tooluniverse/osf_preprints_tool.py +67 -0
  33. tooluniverse/pmc_tool.py +181 -0
  34. tooluniverse/pubmed_tool.py +110 -0
  35. tooluniverse/smcp.py +109 -79
  36. tooluniverse/test/test_claude_sdk.py +11 -4
  37. tooluniverse/unpaywall_tool.py +63 -0
  38. tooluniverse/wikidata_sparql_tool.py +61 -0
  39. tooluniverse/zenodo_tool.py +74 -0
  40. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/METADATA +2 -1
  41. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/RECORD +45 -13
  42. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/entry_points.txt +1 -0
  43. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/WHEEL +0 -0
  44. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/licenses/LICENSE +0 -0
  45. {tooluniverse-1.0.5.dist-info → tooluniverse-1.0.6.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,74 @@
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+ import requests
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+ from .base_tool import BaseTool
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+ from .tool_registry import register_tool
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+
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+
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+ @register_tool("ZenodoTool")
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+ class ZenodoTool(BaseTool):
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+ """
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+ Search Zenodo records with optional community filter.
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+
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+ Parameters (arguments):
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+ query (str): Free text query
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+ max_results (int): Max results (default 10, max 200)
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+ community (str): Optional community slug to filter
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+ """
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+
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+ def __init__(self, tool_config):
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+ super().__init__(tool_config)
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+ self.base_url = "https://zenodo.org/api/records"
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+
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+ def run(self, arguments=None):
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+ arguments = arguments or {}
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+ query = arguments.get("query")
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+ max_results = int(arguments.get("max_results", 10))
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+ community = arguments.get("community")
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+
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+ if not query:
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+ return {"error": "`query` parameter is required."}
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+
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+ params = {
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+ "q": query,
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+ "size": max(1, min(max_results, 200)),
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+ "all_versions": 1,
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+ }
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+ if community:
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+ params["communities"] = community
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+
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+ try:
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+ resp = requests.get(self.base_url, params=params, timeout=20)
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+ resp.raise_for_status()
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+ data = resp.json()
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+ except requests.RequestException as e:
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+ return {
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+ "error": "Network/API error calling Zenodo",
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+ "reason": str(e),
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+ }
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+ except ValueError:
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+ return {"error": "Failed to decode Zenodo response as JSON"}
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+
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+ hits = data.get("hits", {}).get("hits", [])
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+ results = []
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+ for h in hits:
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+ md = h.get("metadata", {})
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+ title = md.get("title")
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+ creators = [
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+ c.get("name") for c in md.get("creators", []) if c.get("name")
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+ ]
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+ publication_date = md.get("publication_date")
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+ doi = md.get("doi") or h.get("doi")
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+ url = h.get("links", {}).get("html")
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+ files = h.get("files", []) or h.get("links", {}).get("latest")
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+ results.append(
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+ {
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+ "title": title,
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+ "authors": creators,
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+ "date": publication_date,
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+ "doi": doi,
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+ "url": url,
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+ "files": files,
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+ "source": "Zenodo",
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+ }
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+ )
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+
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+ return results
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
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  Name: tooluniverse
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- Version: 1.0.5
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+ Version: 1.0.6
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  Summary: A comprehensive collection of scientific tools for Agentic AI, offering integration with the ToolUniverse SDK and MCP Server to support advanced scientific workflows.
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  Author-email: Shanghua Gao <shanghuagao@gmail.com>
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  Project-URL: Homepage, https://github.com/mims-harvard/ToolUniverse
@@ -47,6 +47,7 @@ Requires-Dist: pre-commit>=2.0; extra == "dev"
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  Provides-Extra: docs
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  Requires-Dist: sphinx>=4.0; extra == "docs"
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  Requires-Dist: furo>=2024.8.6; extra == "docs"
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+ Requires-Dist: pydata-sphinx-theme>=0.15.0; extra == "docs"
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  Requires-Dist: sphinx-rtd-theme>=1.0; extra == "docs"
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  Requires-Dist: myst-parser>=0.18; extra == "docs"
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  Requires-Dist: linkify-it-py>=2.0.0; extra == "docs"
@@ -1,48 +1,61 @@
1
- tooluniverse/__init__.py,sha256=cTSgL2DN923MpPxGYeoPri3bW5u4GtNbDhU0YNXsgZM,14420
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+ tooluniverse/__init__.py,sha256=MTyhjACJmheyLCoaMpmBXINi_CVj8DanOO8ogZbOQpk,15926
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  tooluniverse/admetai_tool.py,sha256=nEfq7dwvFqjDryKv3nivGoBSRap6LT7_m76iMu72Q6E,3009
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- tooluniverse/agentic_tool.py,sha256=9hfcoXDzhIK8T7lxzvLp5633S5hL12kcuvMJWLzxbi4,21028
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+ tooluniverse/agentic_tool.py,sha256=0d3Z29lh2fY466Nd8BlbCOYQL5SklkNsZp8sflL_kM4,23969
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4
  tooluniverse/alphafold_tool.py,sha256=NkKQttC0MfuetCTTcWTFEG2MdhyKwy3jb5TR4odiqAw,4658
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+ tooluniverse/arxiv_tool.py,sha256=_J9q_Z4o3DGXtPKMVIiYgZPbioZdA4wzMe7rsfB2u-Q,3670
5
6
  tooluniverse/base_tool.py,sha256=uA-wGrs1drEJJbIp24YfWWWWfNGeMqEQo1tI6r3csEg,5664
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+ tooluniverse/biorxiv_tool.py,sha256=GYyVFqSNEWDwscDrzLEg7IpiyUla7Zp_v-mAle8uXYI,3170
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  tooluniverse/boltz_tool.py,sha256=Kfcymeu6FRRpWLw7dWhEON4PUBTsHuBiTAPJlYH5ZGs,7930
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  tooluniverse/chem_tool.py,sha256=tJusjamWNp0x8Ke-cvVgKB7-clvD6LXTaXA0Q0fqQv4,8336
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  tooluniverse/compose_tool.py,sha256=mK4yqo1rsxY9lWlGEyJfNqgEfjQN9ITDkW2telI1ZJM,13851
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+ tooluniverse/core_tool.py,sha256=Gvby-W95Us9HIqIrH0FqrrT2ytmhpAtGWUlK6ESwGMM,5098
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+ tooluniverse/crossref_tool.py,sha256=RzJQLDbsEWianNVLhkJkzF2dnHWwIImy8sNaE6Lr1TM,2362
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  tooluniverse/ctg_tool.py,sha256=3nR_F-YGpxVmTa6u5xi-mrTmLSH7OBehP4EJo-CQS0Y,46053
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  tooluniverse/custom_tool.py,sha256=w2LMMRT82byxSNYPBKmuEJ2lbKktDJt_iW0Ew24M5VY,2701
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  tooluniverse/dailymed_tool.py,sha256=sxIs0xYwX0CVlkhHaPwvGV-Oo1OW2tvsWZypAWujt9k,3800
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  tooluniverse/dataset_tool.py,sha256=cmcCz_SFs7V78EZDNLesnQ2Qe9fVz1jOLghrpwe8hM8,11371
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- tooluniverse/default_config.py,sha256=hANCqLH8bqMQTNqnI9SbwTPi6dbtu8luh4Qz0X_HphY,7355
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+ tooluniverse/dblp_tool.py,sha256=4rDbb5OOzwHw4Y8FbHicCCpu5ZDAxa44EV9wzMBnu54,1835
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+ tooluniverse/default_config.py,sha256=s69R1DwOvAX7bAAmi06gt5VCX76FVuwuqQEgIXKOVFI,8529
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+ tooluniverse/doaj_tool.py,sha256=e7iN7X9ihETyCZivz0IBG6Dpo5Mr15t6CAnrZm1t8gs,4380
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  tooluniverse/efo_tool.py,sha256=J4tjPFlNa9KhmQTEToBZN-m8jMuF1IKf2yQb1dyTeXI,1394
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  tooluniverse/embedding_database.py,sha256=ua-yIyv3dPq2GHdyZmiwZyaUlkKYyV3nslB4H9asvDo,24682
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  tooluniverse/embedding_sync.py,sha256=Cq3g64MjNXXpiImrzPMNsCTvGZeEI9009OlHOD3EloI,14669
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  tooluniverse/enrichr_tool.py,sha256=YXuHwoG_Hi-kUWK7cY_X21b5pbqoREdG7fJxKq050Jg,9472
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  tooluniverse/europe_pmc_tool.py,sha256=aYTkDE_KMnpkYYMG5ojYZQ1QYsYB_Msf3pvNwY1Zz6w,1645
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- tooluniverse/execute_function.py,sha256=T5y0OQdsPyz0hvrl9pqIfWjPi2OBJ1fhpuDPzjlKPac,82979
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+ tooluniverse/execute_function.py,sha256=dEvGQpFMXEjQmLyMHcHYBqgDR4JWfHMz265evbIceu4,85004
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  tooluniverse/extended_hooks.py,sha256=1Cg0rETh6_D21YFVqD-FhL7y4inZAGyQ6vMtHyugueg,15376
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+ tooluniverse/fatcat_tool.py,sha256=t_fknhKlKxNBcNHWQkL7ZZUrI28dDdKlMsJJ0eXw-x4,2052
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  tooluniverse/gene_ontology_tool.py,sha256=l89XYdBEBm3eN3dG0lR4oV01H16_9IUB6a2c7W_c7Lg,7180
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  tooluniverse/graphql_tool.py,sha256=y7ztNyb9hn4OdSGKhLsHev_snkNgbAwJZL8ZGHm0LEk,8980
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  tooluniverse/gwas_tool.py,sha256=hq4VhB93DhczZo0xRGjGS9AtdKWL0O_XQy3eoV_fi8E,12351
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+ tooluniverse/hal_tool.py,sha256=Vin48j0fgPecEAttZjCW1kHm0ZTfDDB0ti85SwdmyO0,2487
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  tooluniverse/hpa_tool.py,sha256=siRA0usQ0Rggloy3VL1b56QlytabndXS8Xzc9H3uWs8,64998
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  tooluniverse/humanbase_tool.py,sha256=xojNboYvFrW_LAzOzKaexp6tvyGSbUazpMfOvX5ETXY,15006
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- tooluniverse/llm_clients.py,sha256=iA0a_TS3KM4REd-BZP-dehv-OKsEXIX07foJebdrS5I,22093
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+ tooluniverse/llm_clients.py,sha256=xwsqzWVvirGQSVZjfGErnte1HhcKKuOJR9VTOfpOPDE,31489
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  tooluniverse/logging_config.py,sha256=SWM8TCrv0RZJZbC8NNwy8h04V9BvqSVyzwJFcW43eFI,7212
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  tooluniverse/mcp_client_tool.py,sha256=R2WWAbnjzCFEKfeddTvtZTSZqtnvKRayV2ha2xdV9EU,28741
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  tooluniverse/mcp_integration.py,sha256=9VtFDFbcVIuKO_sd1gFrOd-R0r6uxlYRjdsOKiqV1zs,13912
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  tooluniverse/mcp_tool_registry.py,sha256=H9jCzhywtkgm7I4d-zj0eV9Xmt1ZUXubX0XiPGL5pUs,31795
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  tooluniverse/medlineplus_tool.py,sha256=__D7W2Khl05WllMnoV4Owv3pyl5EXS1lzEJmAE7PbD0,13214
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+ tooluniverse/medrxiv_tool.py,sha256=xfIXS91cmwlmqy-OIq-r9rTnX6g442Ujco0U-_8LiSU,3189
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  tooluniverse/odphp_tool.py,sha256=xOuXOoZC55cWfX-rYfPY6E5h6gCMd4yO1u_R1oBpoMk,8897
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+ tooluniverse/openaire_tool.py,sha256=Y9qgtY-uh61S3ZKQ6lG_R9j0ihw59yUorDByWJ-GtnE,4838
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  tooluniverse/openalex_tool.py,sha256=cR6K4ycFTarXxkNM_Rm2ULNu3K4QJX0ukK-7YVZiLcg,8066
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  tooluniverse/openfda_adv_tool.py,sha256=t5kffba0iNDVtFHYPtfLW8ql4dKLaWwdcFnE9cNmNWE,10168
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  tooluniverse/openfda_tool.py,sha256=AetafmFr1IygGAL8p1-URsNahVdN52tN0FvToTlkcMw,27425
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+ tooluniverse/osf_preprints_tool.py,sha256=GM69WNLKkUOOtepbpasKDOEInBNHhr8zIYYk7EHgiDc,2192
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  tooluniverse/output_hook.py,sha256=2f95WFXA9DC6-HV4uJb8ZJAF-VmlmM2DPVvG2up_4EE,46279
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  tooluniverse/package_tool.py,sha256=Ri-TPc_jTY3olHjPsMkEe2z45vknM7yynjtMXkh3Le8,8294
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+ tooluniverse/pmc_tool.py,sha256=MHFBG1hiYjH3qEnrcjlGaZOkv5yNxQiAZ9XDRrf-XDI,6338
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  tooluniverse/pubchem_tool.py,sha256=14C_5uz0RNzv5HaSAXHlq13TZLtlkhmJhr7RrjI91Yk,6415
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+ tooluniverse/pubmed_tool.py,sha256=iiN7KTARMS02yzOLzgXKpHxa5GAeeyWfQnb8ql3wD70,3428
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  tooluniverse/pubtator_tool.py,sha256=WdFufeT3hY2lCq6vb9SLF44UYJ48PiZ1mf4bSfpI7mg,7151
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  tooluniverse/rcsb_pdb_tool.py,sha256=8N6bvlD2KIHfNum_FvbXwIa96mKvHorno5ZdjAHgmrc,1550
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  tooluniverse/reactome_tool.py,sha256=ngmJXCcQfsu5d8XcX258ZHW4DIBi45sSjYNwUBk8nxo,4481
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  tooluniverse/remote_tool.py,sha256=ywb5xaJBqOT38_r5FBVoF3QFQDcLvfOH5AQrT-g7Fcs,3368
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  tooluniverse/restful_tool.py,sha256=H7alq_vO3G4iVgZIZrrWh9vq2ForJN52Fl7_QOq7yaM,4409
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  tooluniverse/semantic_scholar_tool.py,sha256=3gMHF-ReyNsP74oV7LzphhkhjYOX44F4JpnvIafaWPY,1970
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- tooluniverse/smcp.py,sha256=i2nvJqZLx4XkGkioG25VVgQOFgQJW_QK4OpbS_jC-QY,104959
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+ tooluniverse/smcp.py,sha256=U2M1RMx8r98sSihhk42swQ3y3fCRnS8HfBIinijp4t4,106032
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  tooluniverse/smcp_server.py,sha256=S-l8Z-wHrxTBrNZ3CdDfkV9Y0Y_BmD8UcF7NUQUX5uw,34316
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  tooluniverse/tool_finder_embedding.py,sha256=O0WMCT6z7a_pDDew04QtpyPk_qzfGCX_647rsrBs0ug,11239
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  tooluniverse/tool_finder_keyword.py,sha256=_Nt4-C1RranoywTk8vi6MePWPoNqFwOhafMDiTYl_SU,23480
@@ -50,10 +63,13 @@ tooluniverse/tool_finder_llm.py,sha256=W63BDow6ioWQJgkpuhS3f0f4lb48uT_Jzc_bTqhBK
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  tooluniverse/tool_graph_web_ui.py,sha256=68s1MPXTcT6bzdFfuat9gvSNjSgwHxNC-TztfH3raeQ,27987
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  tooluniverse/tool_registry.py,sha256=1EUAUYwX0De9Ld2O020cEg1hDlAF-mTJ946datMOg5s,14558
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  tooluniverse/uniprot_tool.py,sha256=oIy8O0tHQWgb1rAtxTGZfXEVJLLRM5fFVe2SVc5OpNI,6231
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+ tooluniverse/unpaywall_tool.py,sha256=z5Z0kuY9tMlfDMbHS0nndg23WOl31CeYL2mOQJIUt3g,2071
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  tooluniverse/url_tool.py,sha256=8dY1Uoq0VHPwaBN7Z3Kw9ceNyCPO61FLexAmhHsKCUI,9018
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  tooluniverse/uspto_tool.py,sha256=lelrwFaMen_0O3U86UoY-xcZ5pLH9Cwk1kY5iYD1AcE,8992
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  tooluniverse/utils.py,sha256=T0rXjsqCfhz-yvRxKvSCzGCMLaKv7VcezFEhV9sN-18,16865
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+ tooluniverse/wikidata_sparql_tool.py,sha256=CVrXP4SyvEJUBAXxjQP5c42cpJkC1Ar-IbiaIC5qjNQ,1987
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  tooluniverse/xml_tool.py,sha256=ynv6NEU-QTSliB9P02qnHxoxIGeRu7Bb-KHOmR0pN24,14671
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+ tooluniverse/zenodo_tool.py,sha256=_bE8nTWzPK_OBw00Y9I0lAyEy7PuyDieUdzakwmVSZw,2366
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  tooluniverse/compose_scripts/__init__.py,sha256=8e9aVruvvUQxLSuPEgcrljS-f1fJbnIwB6XKb4ZeWn0,41
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  tooluniverse/compose_scripts/biomarker_discovery.py,sha256=Im7SO1boySOVAcOz5JtuNw5Uo43i4SLBVgDRyXUke2k,13173
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  tooluniverse/compose_scripts/comprehensive_drug_discovery.py,sha256=k5aoTkC5bTneM9asOuYKz0dCwewVv2kWOXUdS_CAoOc,8588
@@ -70,36 +86,49 @@ tooluniverse/data/admetai_tools.json,sha256=08LCNSCZJxL6ZuPF1mVfbdlh9f2X5tnEwIYU
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  tooluniverse/data/adverse_event_tools.json,sha256=EDU_X8r4YtMnVt7SJpyimdo3FlcSNFSdvckWLShDODA,12752
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  tooluniverse/data/agentic_tools.json,sha256=uRaWGpxL7DyS5ufiP6tHrAATL-uIqVzZhDK4VXLu81Y,103250
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  tooluniverse/data/alphafold_tools.json,sha256=--JO9z9fQM95t5dphrBoKKr28HKWg7iQOUm1hQYhEOk,10628
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+ tooluniverse/data/arxiv_tools.json,sha256=dW0R9Cq5pfrlQb68gus6aTpf7e9EfLdp7GkYU_vrYVY,3261
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+ tooluniverse/data/biorxiv_tools.json,sha256=nNsnOcqGHrhO-avRvFTtyrNyOfiPSrga3X51lbf3OSo,2510
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  tooluniverse/data/boltz_tools.json,sha256=_pMSRBkO3uj4vjYnQ7H6qbZFa4rzc9Looj6zHRyIkMg,303
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  tooluniverse/data/chembl_tools.json,sha256=aQfFyFlUNz_y9ZTO3dNje4QGhqt7rLv6j5YdMJR2-x8,747
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  tooluniverse/data/clinicaltrials_gov_tools.json,sha256=_3NphPP_9cLviktCNnfsoSo_EHIkKA4lDTmuSycQJ58,16102
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  tooluniverse/data/compose_tools.json,sha256=9l4FbSx8s0V6-k_6-5Fr2-Z_LDZ_WnxZke_UZxZk1g8,10913
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+ tooluniverse/data/core_tools.json,sha256=D34alhGVXop0fX5BRhHCbRSvGIFsElga7EX_PBs6UR4,4326
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+ tooluniverse/data/crossref_tools.json,sha256=0GpswzjtCU22LHMsqO0wMWSSjt0MBwW4IxuctaG5NV8,2696
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  tooluniverse/data/dailymed_tools.json,sha256=F7zSeK6MM9eGKUXZpyeVNFD1UkOkd-0OoxmTlgnEffg,2059
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  tooluniverse/data/dataset_tools.json,sha256=MiJKlKTEFRILbhy2DPnhG_9upFu5GJ2-YCu9HarjcD8,29506
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+ tooluniverse/data/dblp_tools.json,sha256=e_lfvSEu1lqStQ6LTUyz8ei4FQPP6unXS4KP-4tRNMM,2752
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  tooluniverse/data/disease_target_score_tools.json,sha256=xhU5bigeNa2FSn0bqVPArXVid6lkwfFBDpD2xbSGisc,23199
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+ tooluniverse/data/doaj_tools.json,sha256=GjuxQFnnNEACOPBTFkZc-NyDMqpgSXYHLlocQkk0a3Y,3573
80
102
  tooluniverse/data/efo_tools.json,sha256=qsEElKp1Z4EX09OD4r1ETcw6jT2t_w32SlDz-v8RyDc,564
81
103
  tooluniverse/data/embedding_tools.json,sha256=7kTjEAfnVmvixfyk4rgJRXpq-ZDsvEKTZhi0VHanqfI,12979
82
104
  tooluniverse/data/enrichr_tools.json,sha256=kouTYguewNXMSmGwvEDVU9aG8ka6Mg7bRMIVr0gNmN8,1312
83
105
  tooluniverse/data/europe_pmc_tools.json,sha256=gEBy1j-VjUPs_tdfWhR-5JMrfc81iQuiR29SshHz-vU,959
84
106
  tooluniverse/data/expert_feedback_tools.json,sha256=Uq3pit2dvffLWl01ycJiFh7NSMVE9Ol7qUMWjGwUvYw,453
107
+ tooluniverse/data/fatcat_tools.json,sha256=DwBV36VoRy9km2Td_3Yi-OhzTYG9VleO3s6IRsJ1NgE,2671
85
108
  tooluniverse/data/fda_drug_adverse_event_tools.json,sha256=uGeUs0cyHo1AXconRmS8djFsYJHNsAjJpbZW417Fj4I,24064
86
109
  tooluniverse/data/fda_drug_labeling_tools.json,sha256=Shp6yf8C5YMIfUrweCmXJL5DH8ZndnM3gP519pY5iaI,224728
87
110
  tooluniverse/data/fda_drugs_with_brand_generic_names_for_tool.py,sha256=TlXXiMI1FUwXxX2pZW0G4vrZ5_10Jg03qDnL8BzUZXY,6009537
88
111
  tooluniverse/data/finder_tools.json,sha256=e-3-yXL4R7sV6g4LOhIc9bSoiJLY53qx8w-guWe5eks,5974
89
112
  tooluniverse/data/gene_ontology_tools.json,sha256=BG7E5sxXJy2XYbNjsELptk8J2iZf0CqlgzjyHtPX-XU,4252
90
113
  tooluniverse/data/gwas_tools.json,sha256=G2Z7kKPK5UsqNot3sJnP8RmeEY2wjfOMonY19Bwf0zM,51777
114
+ tooluniverse/data/hal_tools.json,sha256=vYgpvOJ5QMlUgNuLQW6wzj6wziC-HkXIUNabgg6o5fI,2508
91
115
  tooluniverse/data/hpa_tools.json,sha256=mNpWuDQOlnJEbhDq4tDl_Nhq5PEXNSitx4Jjm09PkW0,17582
92
116
  tooluniverse/data/humanbase_tools.json,sha256=WQ8rsNd0CdAg8UM2RAFs9u2lHO1rAXVQUi6Fs7JQGfk,2493
93
117
  tooluniverse/data/idmap_tools.json,sha256=ROokr0F2Tws9GE6qG42BYAKxJ9md0xrQ-NgLoXNGYoA,3186
94
118
  tooluniverse/data/mcp_client_tools_example.json,sha256=gnubP44yiaRp1LRHhREsa9t934svLzxBhB-vnH4hM_g,3986
95
119
  tooluniverse/data/mcpautoloadertool_defaults.json,sha256=I1Z6Xnno6BRX7u9Ec4LlXlz-384GWpaBafPVHsqTr_c,998
96
120
  tooluniverse/data/medlineplus_tools.json,sha256=Jxy4Mqw6l6VYKfQ1sS54iR5SdDJFqVSryPHAgUWV5MQ,7236
121
+ tooluniverse/data/medrxiv_tools.json,sha256=zjkJhfPDEPJ5bf-T4Wt91XWcqGVJd6GOz3G-yzoU9-0,2508
97
122
  tooluniverse/data/monarch_tools.json,sha256=-uyhy-FlYBCmP0_biespZcuBHwcvOPmxX4gNYnTmgMU,3568
98
123
  tooluniverse/data/odphp_tools.json,sha256=OYmtX7Ux4-9lwz7vbUkKG1g9nQXqAPHgPufdSuHavdM,14602
124
+ tooluniverse/data/openaire_tools.json,sha256=o_QfhY6MiEgTMEOdc1LX53SWjkqOmS_6yuoXUmqFvt8,3338
99
125
  tooluniverse/data/openalex_tools.json,sha256=6y-1rqRAwR8dzxT3E5sroTdzfl4OVJMxdLSPcIBb-vQ,1736
100
126
  tooluniverse/data/opentarget_tools.json,sha256=IZGLUbQWC--u_DSNoGGMtI9V9YFxucHB1ESqglJWCY8,67795
127
+ tooluniverse/data/osf_preprints_tools.json,sha256=yh_GZu1NVNLoECLLUXQ7IzyXzNixt6Be-bmfqt30Hlg,2896
101
128
  tooluniverse/data/output_summarization_tools.json,sha256=9BxZAkzexsDp8jGMKUHW3LIRThZjleRjYRvk0y-bxEs,3944
129
+ tooluniverse/data/pmc_tools.json,sha256=mNQFFBdHhfwIWgAYYNWpnOaTUxakAUNxfvrlI-v3Gys,4554
102
130
  tooluniverse/data/pubchem_tools.json,sha256=_q3sov5n2fGhBT43gzfqSjsjT1uc_itiF9HT2UV3jFU,12695
131
+ tooluniverse/data/pubmed_tools.json,sha256=Tuwr48VX0a2CpnKJmnv_lrfZQwM0LTYDrDU9k6wLrp0,2420
103
132
  tooluniverse/data/pubtator_tools.json,sha256=WkcP3DFlC6EcL9zf2KMrDITC0_fYPNTu60by0RJBdVI,2511
104
133
  tooluniverse/data/rcsb_pdb_tools.json,sha256=gKY8Y9QDN4-3ILc2KFLGdPFXG1M9LhXMAPFQtwnP7Bg,47767
105
134
  tooluniverse/data/reactome_tools.json,sha256=h8Ubkllr4LMFc8UPUFQ8SZf_-wdWdh_NaHAKhx31Db0,557
@@ -109,10 +138,13 @@ tooluniverse/data/tool_composition_tools.json,sha256=kx9S7TSQqkQb4n13WuW204NL9Zq
109
138
  tooluniverse/data/toolfinderkeyword_defaults.json,sha256=bydTVd0IUSDiilNQ6kZU-cn4lPqOfInfUAxhh8yMXqY,1050
110
139
  tooluniverse/data/txagent_client_tools.json,sha256=GdQk5H6uP_Uj9Ejz3nMdzNhZJV42t75aiRW8oWtkzRw,409
111
140
  tooluniverse/data/uniprot_tools.json,sha256=eiRlXBTB3jEboF2eDFFgvI14gDuHD0snOr-sm5ouQfo,8046
141
+ tooluniverse/data/unpaywall_tools.json,sha256=7ciTSVOeaCwmIA88Lrm_t17mNDqCxPZMtI1pHYsaRco,3123
112
142
  tooluniverse/data/url_fetch_tools.json,sha256=KgypHQxze95a04-BeFc36bgvthGBACwF5hYDCNf_-tc,3157
113
143
  tooluniverse/data/uspto_downloader_tools.json,sha256=hMHwvP_hvuFg-upZAAXufywYKx031iQ0xuMyHfzu0uA,349
114
144
  tooluniverse/data/uspto_tools.json,sha256=S6unaJGVrH6wRjXTOwTXvumzv4bCek1Kf07tSStZjLM,32073
145
+ tooluniverse/data/wikidata_sparql_tools.json,sha256=EUipq3cpfhBNLPioDD11xJ26eF3eFRUtRJ0RCHxC03E,2045
115
146
  tooluniverse/data/xml_tools.json,sha256=tt7SFQB8DIKAtPPTabJgQ4ccW-UcDyvKiy2mRtUO_k0,147637
147
+ tooluniverse/data/zenodo_tools.json,sha256=EsW25-3I2e8A4gG05Pkc5SoptHeu9w5yjptaIoytD8s,3117
116
148
  tooluniverse/data/packages/bioinformatics_core_tools.json,sha256=ScG9555zR0caPiLlmCnBlsOM9s5sgYMKJrvWnf7niaY,164753
117
149
  tooluniverse/data/packages/categorized_tools.txt,sha256=NweDa6MbgS_4480RuNk-sw9LaxyA05VkzSgIRfvYkLI,4823
118
150
  tooluniverse/data/packages/cheminformatics_tools.json,sha256=aiyLjU9E4d2UaJ8A8AGxfcQ52TIMaO_79N1QVMHnes4,30845
@@ -149,7 +181,7 @@ tooluniverse/test/test_agentic_tool_azure_models.py,sha256=2T3R_rm2jZ-tVe8b_3RI2
149
181
  tooluniverse/test/test_alphafold_tool.py,sha256=Hj-ITZqWO-U8OVNveVtmLVACiOAzwUYh1COwjcIaxrQ,3459
150
182
  tooluniverse/test/test_api_key_validation_min.py,sha256=esWQywax1fSLvinZ_LXbLVVqUxstqmlkIV0ZfAj7sPg,1976
151
183
  tooluniverse/test/test_chem_tool.py,sha256=N_ARBvouWyJMgWL1yMXSg1w407fBB-CZxJysFVRE6uY,1589
152
- tooluniverse/test/test_claude_sdk.py,sha256=iHfmbxEns-_0RTzlLHfZEuIl45AAaVXr1KGnudnJ_Y4,2617
184
+ tooluniverse/test/test_claude_sdk.py,sha256=q1Sy2G8K4tR112G68l8WOpZ3PxOUaBQnLQxGu05m2sY,2865
153
185
  tooluniverse/test/test_compose_lieraturereview.py,sha256=qNkgXHXJm7Ekiw9e0mcgtqs1z5c-MeE3qy0RoexF9Tg,1956
154
186
  tooluniverse/test/test_compose_tool.py,sha256=reRhUWhSuWwuorWF0jbDQHhIEd14UTq_GDSe0Wwl0v4,16607
155
187
  tooluniverse/test/test_dailymed.py,sha256=Dttqr6XNhFQaT34mg2TimQYaePN6aOn8BsOMj26Vm6w,2594
@@ -190,9 +222,9 @@ tooluniverse/test/test_tools_find.py,sha256=vP9EV04iXXmejoY2rDhEM0Yc9uHEO2qEmd8s
190
222
  tooluniverse/test/test_uniprot_tools.py,sha256=V0x7aQjjlE-wS5alFWviHNwC3saHiEE5pMMqAcbokaw,2582
191
223
  tooluniverse/test/test_uspto_tool.py,sha256=y2VQBMbiHCTAmvXhBosHrc1innstUl9UMWNoPaBv-RY,2311
192
224
  tooluniverse/test/test_xml_tool.py,sha256=tx-w_psZ801C2kM6aDbBzR8QV3Vgu1p2zP6zExhjpVs,3602
193
- tooluniverse-1.0.5.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
194
- tooluniverse-1.0.5.dist-info/METADATA,sha256=aa0FEMJExvBLUEf11_siI_L1YdmGk_ctqGMgk6NNxiA,20322
195
- tooluniverse-1.0.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
196
- tooluniverse-1.0.5.dist-info/entry_points.txt,sha256=Z_znqzUc_XR9ZIXViavqNAwBkwM4XYfC9h7LoBbAAog,600
197
- tooluniverse-1.0.5.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
198
- tooluniverse-1.0.5.dist-info/RECORD,,
225
+ tooluniverse-1.0.6.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
226
+ tooluniverse-1.0.6.dist-info/METADATA,sha256=FrR47FMPn9g_BeqF9ZTddJdpRGRE1AhPk9i6dYFo7Ew,20382
227
+ tooluniverse-1.0.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
228
+ tooluniverse-1.0.6.dist-info/entry_points.txt,sha256=-2zG8SrMsIU4k3V2sGxq94uesFUVm9L8OEcGY9NgY1k,689
229
+ tooluniverse-1.0.6.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
230
+ tooluniverse-1.0.6.dist-info/RECORD,,
@@ -7,3 +7,4 @@ tooluniverse-mcp-claude = tooluniverse.smcp_server:run_stdio_server
7
7
  tooluniverse-smcp = tooluniverse.smcp_server:run_smcp_server
8
8
  tooluniverse-smcp-server = tooluniverse.smcp_server:run_http_server
9
9
  tooluniverse-smcp-stdio = tooluniverse.smcp_server:run_stdio_server
10
+ tooluniverse-wide-research = tooluniverse.web_tools.literature_search_ui.simple_app:main