tooluniverse 1.0.4__py3-none-any.whl → 1.0.6__py3-none-any.whl
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- tooluniverse/__init__.py +56 -5
- tooluniverse/agentic_tool.py +90 -14
- tooluniverse/arxiv_tool.py +113 -0
- tooluniverse/biorxiv_tool.py +97 -0
- tooluniverse/core_tool.py +153 -0
- tooluniverse/crossref_tool.py +73 -0
- tooluniverse/data/agentic_tools.json +2 -2
- tooluniverse/data/arxiv_tools.json +87 -0
- tooluniverse/data/biorxiv_tools.json +70 -0
- tooluniverse/data/core_tools.json +105 -0
- tooluniverse/data/crossref_tools.json +70 -0
- tooluniverse/data/dblp_tools.json +73 -0
- tooluniverse/data/doaj_tools.json +94 -0
- tooluniverse/data/fatcat_tools.json +72 -0
- tooluniverse/data/hal_tools.json +70 -0
- tooluniverse/data/medrxiv_tools.json +70 -0
- tooluniverse/data/odphp_tools.json +354 -0
- tooluniverse/data/openaire_tools.json +85 -0
- tooluniverse/data/osf_preprints_tools.json +77 -0
- tooluniverse/data/pmc_tools.json +109 -0
- tooluniverse/data/pubmed_tools.json +65 -0
- tooluniverse/data/unpaywall_tools.json +86 -0
- tooluniverse/data/wikidata_sparql_tools.json +42 -0
- tooluniverse/data/zenodo_tools.json +82 -0
- tooluniverse/dblp_tool.py +62 -0
- tooluniverse/default_config.py +18 -0
- tooluniverse/doaj_tool.py +124 -0
- tooluniverse/execute_function.py +70 -9
- tooluniverse/fatcat_tool.py +66 -0
- tooluniverse/hal_tool.py +77 -0
- tooluniverse/llm_clients.py +487 -0
- tooluniverse/mcp_tool_registry.py +3 -3
- tooluniverse/medrxiv_tool.py +97 -0
- tooluniverse/odphp_tool.py +226 -0
- tooluniverse/openaire_tool.py +145 -0
- tooluniverse/osf_preprints_tool.py +67 -0
- tooluniverse/pmc_tool.py +181 -0
- tooluniverse/pubmed_tool.py +110 -0
- tooluniverse/remote/boltz/boltz_mcp_server.py +2 -2
- tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py +2 -2
- tooluniverse/smcp.py +313 -191
- tooluniverse/smcp_server.py +4 -7
- tooluniverse/test/test_claude_sdk.py +93 -0
- tooluniverse/test/test_odphp_tool.py +166 -0
- tooluniverse/test/test_openrouter_client.py +288 -0
- tooluniverse/test/test_stdio_hooks.py +1 -1
- tooluniverse/test/test_tool_finder.py +1 -1
- tooluniverse/unpaywall_tool.py +63 -0
- tooluniverse/wikidata_sparql_tool.py +61 -0
- tooluniverse/zenodo_tool.py +74 -0
- {tooluniverse-1.0.4.dist-info → tooluniverse-1.0.6.dist-info}/METADATA +101 -74
- {tooluniverse-1.0.4.dist-info → tooluniverse-1.0.6.dist-info}/RECORD +56 -19
- {tooluniverse-1.0.4.dist-info → tooluniverse-1.0.6.dist-info}/entry_points.txt +1 -0
- tooluniverse-1.0.6.dist-info/licenses/LICENSE +201 -0
- tooluniverse-1.0.4.dist-info/licenses/LICENSE +0 -21
- {tooluniverse-1.0.4.dist-info → tooluniverse-1.0.6.dist-info}/WHEEL +0 -0
- {tooluniverse-1.0.4.dist-info → tooluniverse-1.0.6.dist-info}/top_level.txt +0 -0
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[
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{
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"type": "HALTool",
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"name": "HAL_search_archive",
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"description": "Search the French HAL open archive via its public API. Returns documents with title, authors, year, DOI, URL, abstract, and source.",
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"parameter": {
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"type": "object",
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"properties": {
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"query": {
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"type": "string",
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"description": "Search query for HAL archive. Supports Lucene syntax for advanced queries."
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},
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"max_results": {
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"type": "integer",
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"description": "Maximum number of documents to return. Default is 10, maximum is 100.",
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"default": 10
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}
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},
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"required": ["query"]
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},
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"return_schema": {
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"type": "array",
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"description": "List of HAL documents matching the search query",
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"items": {
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"type": "object",
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"properties": {
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"title": {
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"type": "string",
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"description": "Title of the document"
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},
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"authors": {
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"type": "array",
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"items": {"type": "string"},
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"description": "List of author names"
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},
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"year": {
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"type": "integer",
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"description": "Publication year"
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},
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"doi": {
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"type": "string",
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"description": "Digital Object Identifier (if available)"
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},
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"url": {
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"type": "string",
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"description": "URL to the document on HAL"
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},
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"abstract": {
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"type": "string",
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"description": "Abstract of the document"
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},
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"source": {
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"type": "string",
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"description": "Source identifier (always 'HAL')"
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}
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}
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},
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"test_examples": [
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{
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"query": "mathematics",
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"max_results": 2
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},
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{
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"query": "physics",
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"max_results": 1
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}
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]
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}
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]
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[
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{
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"type": "MedRxivTool",
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"name": "MedRxiv_search_preprints",
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"description": "Search medRxiv preprints using the public medRxiv API. Returns preprints with title, authors, year, DOI, and URL.",
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"parameter": {
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"type": "object",
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"properties": {
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"query": {
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"type": "string",
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"description": "Search query for medRxiv preprints. Use keywords separated by spaces to refine your search."
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},
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"max_results": {
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"type": "integer",
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"description": "Maximum number of preprints to return. Default is 10, maximum is 200.",
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"default": 10
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}
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},
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"required": ["query"]
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},
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"return_schema": {
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"type": "array",
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"description": "List of medRxiv preprints matching the search query",
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"items": {
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"type": "object",
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"properties": {
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"title": {
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"type": "string",
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"description": "Title of the preprint"
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},
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"authors": {
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"type": "array",
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"items": {"type": "string"},
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"description": "List of author names"
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},
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"year": {
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"type": "integer",
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"description": "Publication year"
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},
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"doi": {
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"type": "string",
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"description": "Digital Object Identifier"
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},
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"url": {
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"type": "string",
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"description": "URL to the preprint on medRxiv"
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},
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"abstract": {
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"type": "string",
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"description": "Abstract of the preprint"
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},
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"source": {
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"type": "string",
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"description": "Source identifier (always 'medRxiv')"
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}
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}
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}
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},
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"test_examples": [
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{
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"query": "COVID",
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"max_results": 2
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},
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{
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"query": "vaccine",
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"max_results": 1
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}
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]
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}
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]
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[
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{
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"name": "odphp_myhealthfinder",
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"description": "This tool provides personalized preventive-care recommendations and it is helpful for different ages, sexes, pregnancy status, gives age/sex/pregnancy. It retrieves metadata, plain-language sections, and dataset links to the full article (AccessibleVersion links). If the user wants the full text of a recommendation, the `odphp_outlink_fetch` tool is helpful.",
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"type": "ODPHPMyHealthfinder",
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"parameter": {
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"type": "object",
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"properties": {
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"lang": { "type": "string", "description": "Language code (en or es)" },
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"age": { "type": "integer", "description": "Age in years (0–120)" },
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"sex": { "type": "string", "description": "Male or Female" },
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"pregnant": { "type": "string", "description": "\"Yes\" or \"No\"" },
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"strip_html": { "type": "boolean", "description": "If true, also return PlainSections[] with HTML removed for each topic" }
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}
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},
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"fields": { "endpoint": "/myhealthfinder.json", "return_format": "JSON" },
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"return_schema": {
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"type": "object",
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"properties": {
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"Error": { "type": "string" },
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"Total": { "type": "integer" },
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"Query": { "type": "object" },
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"Language": { "type": "string" },
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"MyHFHeading": { "type": "string" },
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"TakeAction": { "type": "string" },
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"AboutTheseResults": { "type": "string" },
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"Resources": {
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"type": "object",
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"properties": {
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"All": {
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"type": "object",
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"properties": {
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"Resource": {
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"Type": { "type": "string" },
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"Id": { "type": "string" },
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"Title": { "type": "string" },
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"TranslationId": { "type": "string" },
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"TranslationTitle": { "type": "string" },
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"Categories": { "type": "string" },
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"MyHFTitle": { "type": "string" },
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"MyHFCategory": { "type": "string" },
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"MyHFCategoryHeading": { "type": "string" },
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"LastUpdate": { "type": "string" },
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"ImageUrl": { "type": "string" },
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"ImageAlt": { "type": "string" },
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"AccessibleVersion": { "type": "string" },
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"RelatedItems": {
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"type": "object",
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"properties": {
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"RelatedItem": {
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"type": "array",
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"items": {
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"properties": {
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"Type": { "type": "string" },
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"Id": { "type": "string" },
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"Title": { "type": "string" },
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"Url": { "type": "string" }
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"Sections": {
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"properties": {
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"Section": {
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"properties": {
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"Title": { "type": "string" },
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"HealthfinderLogo": { "type": "string" },
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"HealthfinderUrl": { "type": "string" }
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"Callouts": {
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"properties": {
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"All": {
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"TranslationId": { "type": "string" },
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"TranslationTitle": { "type": "string" },
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"Categories": { "type": "string" },
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"MyHFTitle": { "type": "string" },
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"MyHFCategory": { "type": "string" },
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"MyHFCategoryHeading": { "type": "string" },
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"LastUpdate": { "type": "string" },
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"ImageUrl": { "type": "string" },
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"ImageAlt": { "type": "string" },
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"AccessibleVersion": { "type": "string" },
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"RelatedItems": {
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"Id": { "type": "string" },
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"Title": { "type": "string" },
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"Url": { "type": "string" }
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"Sections": {
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"properties": {
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"Section": {
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"type": "object",
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"properties": {
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"Title": { "type": "string" },
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"Content": { "type": "string" }
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}
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}
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},
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"section": {
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"properties": {
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"Title": { "type": "string" },
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"Content": { "type": "string" }
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}
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}
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}
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}
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},
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"HealthfinderLogo": { "type": "string" },
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"HealthfinderUrl": { "type": "string" }
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}
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}
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}
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}
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}
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}
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{
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"name": "odphp_itemlist",
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"description": "This tools browses and returns available topics and categories and it is helpful to help narrow a broad request (e.g., “show me all topics”). For full topic content, `odphp_topicsearch` tool is helpful.",
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"type": "ODPHPItemList",
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"parameter": {
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"type": "object",
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"properties": {
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"lang": { "type": "string", "description": "Language code (en or es)" },
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"type": { "type": "string", "description": "topic or category" }
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}
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},
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"fields": { "endpoint": "/itemlist.json", "return_format": "JSON" },
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"return_schema": {
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"type": "object",
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"properties": {
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"Error": { "type": "string" },
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"Total": { "type": "integer" },
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"Query": { "type": "object" },
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"Language": { "type": "string" },
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"Items": {
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"properties": {
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"Item": {
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"type": "array",
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"items": {
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"properties": {
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"Type": { "type": "string" },
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"Id": { "type": "string" },
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"Title": { "type": "string" },
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"ParentId": { "type": "string" },
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"TranslationId": { "type": "string" }
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}
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}
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}
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}
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}
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}
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}
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},
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{
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"name": "odphp_topicsearch",
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"description": "Find specific health topics and get their full content. Use when the user mentions a keyword (e.g., “folic acid”, “blood pressure”) or when you already have topic/category IDs from `odphp_itemlist`. Returns detailed topic pages (Title, Sections, RelatedItems) and an AccessibleVersion link. Next: to quote or summarize the actual page text, pass the AccessibleVersion (or RelatedItems URLs) to `odphp_outlink_fetch`.",
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"type": "ODPHPTopicSearch",
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"parameter": {
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"type": "object",
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"properties": {
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"lang": { "type": "string", "description": "Language code (en or es)" },
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"topicId": { "type": "string", "description": "Comma-separated topic IDs" },
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|
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"categoryId": { "type": "string", "description": "Comma-separated category IDs" },
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|
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"keyword": { "type": "string", "description": "Keyword search for topics" },
|
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|
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"strip_html": { "type": "boolean", "description": "If true, also return PlainSections[] with HTML removed for each topic" }
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}
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},
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"fields": { "endpoint": "/topicsearch.json", "return_format": "JSON" },
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"return_schema": {
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"type": "object",
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"properties": {
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"Error": { "type": "string" },
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"Total": { "type": "integer" },
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"Query": { "type": "object" },
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"Language": { "type": "string" },
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"Resources": {
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"type": "object",
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"properties": {
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"Resource": {
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"Type": { "type": "string" },
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"Id": { "type": "string" },
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"Title": { "type": "string" },
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"TranslationId": { "type": "string" },
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"TranslationTitle": { "type": "string" },
|
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|
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"Categories": { "type": "string" },
|
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|
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"MyHFTitle": { "type": "string" },
|
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|
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"MyHFCategory": { "type": "string" },
|
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|
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"MyHFCategoryHeading": { "type": "string" },
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|
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"LastUpdate": { "type": "string" },
|
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"ImageUrl": { "type": "string" },
|
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|
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"ImageAlt": { "type": "string" },
|
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|
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"AccessibleVersion": { "type": "string" },
|
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|
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"RelatedItems": {
|
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"type": "object",
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"properties": {
|
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"RelatedItem": {
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"type": "array",
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"items": {
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"type": "object",
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|
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"properties": {
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"Type": { "type": "string" },
|
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"Id": { "type": "string" },
|
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|
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"Title": { "type": "string" },
|
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|
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"Url": { "type": "string" }
|
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|
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}
|
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|
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}
|
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|
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}
|
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|
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}
|
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|
+
},
|
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|
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"Sections": {
|
|
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|
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"type": "object",
|
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|
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"properties": {
|
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|
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"Section": {
|
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|
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"type": "array",
|
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|
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"items": {
|
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|
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"type": "object",
|
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|
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"properties": {
|
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|
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"Title": { "type": "string" },
|
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|
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"Content": { "type": "string" }
|
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}
|
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|
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}
|
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|
+
},
|
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|
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"section": {
|
|
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|
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"type": "array",
|
|
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|
+
"items": {
|
|
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|
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"type": "object",
|
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|
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"properties": {
|
|
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|
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"Title": { "type": "string" },
|
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|
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"Content": { "type": "string" }
|
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|
+
}
|
|
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|
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}
|
|
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|
+
}
|
|
303
|
+
}
|
|
304
|
+
},
|
|
305
|
+
"HealthfinderLogo": { "type": "string" },
|
|
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|
+
"HealthfinderUrl": { "type": "string" }
|
|
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|
+
}
|
|
308
|
+
}
|
|
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|
+
}
|
|
310
|
+
}
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
}
|
|
314
|
+
},
|
|
315
|
+
{
|
|
316
|
+
"name": "odphp_outlink_fetch",
|
|
317
|
+
"description": "This tool retrieves readable text from ODPHP article links and information sources. This is helpful after using the `odphp_myhealthfinder` or `odphp_topicsearch` tools or when the user wants to simply dive deeper into ODPHP data.",
|
|
318
|
+
"type": "ODPHPOutlinkFetch",
|
|
319
|
+
"parameter": {
|
|
320
|
+
"type": "object",
|
|
321
|
+
"properties": {
|
|
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|
+
"urls": {
|
|
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|
+
"type": "array",
|
|
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|
+
"items": { "type": "string" },
|
|
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|
+
"description": "1–3 absolute URLs from AccessibleVersion or RelatedItems.Url"
|
|
326
|
+
},
|
|
327
|
+
"max_chars": { "type": "integer", "description": "Optional hard cap on extracted text length (e.g., 5000)" },
|
|
328
|
+
"return_html": { "type": "boolean", "description": "If true, also return minimally cleaned HTML" }
|
|
329
|
+
},
|
|
330
|
+
"required": ["urls"]
|
|
331
|
+
},
|
|
332
|
+
"fields": { "endpoint": "/outlink", "return_format": "JSON" },
|
|
333
|
+
"return_schema": {
|
|
334
|
+
"type": "object",
|
|
335
|
+
"properties": {
|
|
336
|
+
"results": {
|
|
337
|
+
"type": "array",
|
|
338
|
+
"items": {
|
|
339
|
+
"type": "object",
|
|
340
|
+
"properties": {
|
|
341
|
+
"url": { "type": "string" },
|
|
342
|
+
"status": { "type": "integer" },
|
|
343
|
+
"content_type": { "type": "string" },
|
|
344
|
+
"title": { "type": "string" },
|
|
345
|
+
"text": { "type": "string" },
|
|
346
|
+
"html": { "type": "string" }
|
|
347
|
+
}
|
|
348
|
+
}
|
|
349
|
+
},
|
|
350
|
+
"metadata": { "type": "object" }
|
|
351
|
+
}
|
|
352
|
+
}
|
|
353
|
+
}
|
|
354
|
+
]
|
|
@@ -0,0 +1,85 @@
|
|
|
1
|
+
[
|
|
2
|
+
{
|
|
3
|
+
"type": "OpenAIRETool",
|
|
4
|
+
"name": "OpenAIRE_search_publications",
|
|
5
|
+
"description": "Search OpenAIRE Explore for research products including publications, datasets, and software. OpenAIRE is the European open science platform that provides access to research outputs from EU-funded projects.",
|
|
6
|
+
"parameter": {
|
|
7
|
+
"type": "object",
|
|
8
|
+
"properties": {
|
|
9
|
+
"query": {
|
|
10
|
+
"type": "string",
|
|
11
|
+
"description": "Search query for OpenAIRE research products. Use keywords to search across titles, abstracts, and metadata."
|
|
12
|
+
},
|
|
13
|
+
"max_results": {
|
|
14
|
+
"type": "integer",
|
|
15
|
+
"description": "Maximum number of results to return. Default is 10, maximum is 100.",
|
|
16
|
+
"default": 10,
|
|
17
|
+
"minimum": 1,
|
|
18
|
+
"maximum": 100
|
|
19
|
+
},
|
|
20
|
+
"type": {
|
|
21
|
+
"type": "string",
|
|
22
|
+
"description": "Type of research product to search: 'publications', 'datasets', or 'software'. Default is 'publications'.",
|
|
23
|
+
"default": "publications",
|
|
24
|
+
"enum": ["publications", "datasets", "software"]
|
|
25
|
+
}
|
|
26
|
+
},
|
|
27
|
+
"required": ["query"]
|
|
28
|
+
},
|
|
29
|
+
"return_schema": {
|
|
30
|
+
"type": "array",
|
|
31
|
+
"description": "List of OpenAIRE research products matching the search query",
|
|
32
|
+
"items": {
|
|
33
|
+
"type": "object",
|
|
34
|
+
"properties": {
|
|
35
|
+
"title": {
|
|
36
|
+
"type": "string",
|
|
37
|
+
"description": "Title of the research product"
|
|
38
|
+
},
|
|
39
|
+
"authors": {
|
|
40
|
+
"type": "array",
|
|
41
|
+
"items": {"type": "string"},
|
|
42
|
+
"description": "List of author/creator names"
|
|
43
|
+
},
|
|
44
|
+
"year": {
|
|
45
|
+
"type": "string",
|
|
46
|
+
"description": "Publication or creation year"
|
|
47
|
+
},
|
|
48
|
+
"doi": {
|
|
49
|
+
"type": "string",
|
|
50
|
+
"description": "Digital Object Identifier"
|
|
51
|
+
},
|
|
52
|
+
"url": {
|
|
53
|
+
"type": "string",
|
|
54
|
+
"description": "URL to access the research product"
|
|
55
|
+
},
|
|
56
|
+
"type": {
|
|
57
|
+
"type": "string",
|
|
58
|
+
"description": "Type of research product (publications/datasets/software)"
|
|
59
|
+
},
|
|
60
|
+
"source": {
|
|
61
|
+
"type": "string",
|
|
62
|
+
"description": "Source identifier (always 'OpenAIRE')"
|
|
63
|
+
}
|
|
64
|
+
}
|
|
65
|
+
}
|
|
66
|
+
},
|
|
67
|
+
"test_examples": [
|
|
68
|
+
{
|
|
69
|
+
"query": "machine learning",
|
|
70
|
+
"max_results": 2,
|
|
71
|
+
"type": "publications"
|
|
72
|
+
},
|
|
73
|
+
{
|
|
74
|
+
"query": "climate change",
|
|
75
|
+
"max_results": 1,
|
|
76
|
+
"type": "datasets"
|
|
77
|
+
},
|
|
78
|
+
{
|
|
79
|
+
"query": "bioinformatics",
|
|
80
|
+
"max_results": 1,
|
|
81
|
+
"type": "software"
|
|
82
|
+
}
|
|
83
|
+
]
|
|
84
|
+
}
|
|
85
|
+
]
|
|
@@ -0,0 +1,77 @@
|
|
|
1
|
+
[
|
|
2
|
+
{
|
|
3
|
+
"type": "OSFPreprintsTool",
|
|
4
|
+
"name": "OSF_search_preprints",
|
|
5
|
+
"description": "Search OSF (Open Science Framework) Preprints for research preprints and working papers. OSF Preprints aggregates preprints from multiple providers including OSF, PsyArXiv, and others.",
|
|
6
|
+
"parameter": {
|
|
7
|
+
"type": "object",
|
|
8
|
+
"properties": {
|
|
9
|
+
"query": {
|
|
10
|
+
"type": "string",
|
|
11
|
+
"description": "Search query for OSF preprints. Use keywords to search across titles and abstracts."
|
|
12
|
+
},
|
|
13
|
+
"max_results": {
|
|
14
|
+
"type": "integer",
|
|
15
|
+
"description": "Maximum number of results to return. Default is 10, maximum is 100.",
|
|
16
|
+
"default": 10,
|
|
17
|
+
"minimum": 1,
|
|
18
|
+
"maximum": 100
|
|
19
|
+
},
|
|
20
|
+
"provider": {
|
|
21
|
+
"type": "string",
|
|
22
|
+
"description": "Optional preprint provider filter (e.g., 'osf', 'psyarxiv', 'socarxiv'). If not specified, searches all providers."
|
|
23
|
+
}
|
|
24
|
+
},
|
|
25
|
+
"required": ["query"]
|
|
26
|
+
},
|
|
27
|
+
"return_schema": {
|
|
28
|
+
"type": "array",
|
|
29
|
+
"description": "List of OSF preprints matching the search query",
|
|
30
|
+
"items": {
|
|
31
|
+
"type": "object",
|
|
32
|
+
"properties": {
|
|
33
|
+
"title": {
|
|
34
|
+
"type": "string",
|
|
35
|
+
"description": "Title of the preprint"
|
|
36
|
+
},
|
|
37
|
+
"date_published": {
|
|
38
|
+
"type": "string",
|
|
39
|
+
"description": "Publication date of the preprint"
|
|
40
|
+
},
|
|
41
|
+
"published": {
|
|
42
|
+
"type": "boolean",
|
|
43
|
+
"description": "Whether the preprint is published"
|
|
44
|
+
},
|
|
45
|
+
"doi": {
|
|
46
|
+
"type": "string",
|
|
47
|
+
"description": "Digital Object Identifier"
|
|
48
|
+
},
|
|
49
|
+
"url": {
|
|
50
|
+
"type": "string",
|
|
51
|
+
"description": "URL to the preprint on OSF"
|
|
52
|
+
},
|
|
53
|
+
"source": {
|
|
54
|
+
"type": "string",
|
|
55
|
+
"description": "Source identifier (always 'OSF Preprints')"
|
|
56
|
+
}
|
|
57
|
+
}
|
|
58
|
+
}
|
|
59
|
+
},
|
|
60
|
+
"test_examples": [
|
|
61
|
+
{
|
|
62
|
+
"query": "psychology",
|
|
63
|
+
"max_results": 2
|
|
64
|
+
},
|
|
65
|
+
{
|
|
66
|
+
"query": "social science",
|
|
67
|
+
"max_results": 1,
|
|
68
|
+
"provider": "socarxiv"
|
|
69
|
+
},
|
|
70
|
+
{
|
|
71
|
+
"query": "neuroscience",
|
|
72
|
+
"max_results": 1,
|
|
73
|
+
"provider": "psyarxiv"
|
|
74
|
+
}
|
|
75
|
+
]
|
|
76
|
+
}
|
|
77
|
+
]
|