tooluniverse 1.0.2__py3-none-any.whl → 1.0.4__py3-none-any.whl

tooluniverse/test/test_stdio_hooks.py

@@ -0,0 +1,285 @@
+#!/usr/bin/env python3
+"""
+测试 MCP stdio 模式下关闭和开启 hooks 的情况
+"""
+import subprocess
+import json
+import time
+import sys
+
+
+def run_stdio_test(hooks_enabled=False):
+    """运行 stdio 测试"""
+    print(f"\n{'='*60}")
+    print(f"测试模式: {'开启 hooks' if hooks_enabled else '关闭 hooks'}")
+    print(f"{'='*60}")
+
+    # 构建命令
+    cmd = [
+        sys.executable,
+        "-c",
+        f"""
+import sys
+sys.path.insert(0, 'src')
+from tooluniverse.smcp_server import run_stdio_server
+sys.argv = ['tooluniverse-stdio'] + (['--hooks'] if {hooks_enabled} else [])
+run_stdio_server()
+""",
+    ]
+
+    print(f"启动命令: {' '.join(cmd[:3])} ...")
+
+    # 启动服务器进程
+    process = subprocess.Popen(
+        cmd,
+        stdin=subprocess.PIPE,
+        stdout=subprocess.PIPE,
+        stderr=subprocess.PIPE,
+        text=True,
+        bufsize=0,
+    )
+
+    try:
+        # 等待服务器启动并读取启动日志
+        time.sleep(3)
+
+        # 读取并丢弃启动日志
+        print("读取启动日志...")
+        while True:
+            line = process.stdout.readline()
+            if not line:
+                break
+            print(f"启动日志: {line.strip()}")
+            if "Starting SMCP ToolUniverse Server" in line:
+                break
+
+        # 发送初始化请求
+        init_request = {
+            "jsonrpc": "2.0",
+            "id": 1,
+            "method": "initialize",
+            "params": {
+                "protocolVersion": "2024-11-05",
+                "capabilities": {},
+                "clientInfo": {"name": "test-client", "version": "1.0.0"},
+            },
+        }
+
+        print("发送初始化请求...")
+        process.stdin.write(json.dumps(init_request) + "\n")
+        process.stdin.flush()
+
+        # 读取初始化响应
+        init_response = process.stdout.readline()
+        print(f"初始化响应: {init_response.strip()}")
+
+        # 发送 tools/list 请求
+        list_request = {"jsonrpc": "2.0", "id": 2, "method": "tools/list"}
+
+        print("发送 tools/list 请求...")
+        process.stdin.write(json.dumps(list_request) + "\n")
+        process.stdin.flush()
+
+        # 读取 tools/list 响应
+        list_response = process.stdout.readline()
+        print(f"tools/list 响应长度: {len(list_response)} 字符")
+
+        # 发送测试工具调用请求
+        test_request = {
+            "jsonrpc": "2.0",
+            "id": 3,
+            "method": "tools/call",
+            "params": {
+                "name": "OpenTargets_get_target_gene_ontology_by_ensemblID",
+                "arguments": {"ensemblId": "ENSG00000012048"},
+            },
+        }
+
+        print("发送测试工具调用请求...")
+        process.stdin.write(json.dumps(test_request) + "\n")
+        process.stdin.flush()
+
+        # 读取工具调用响应（可能需要等待更长时间）
+        print("等待工具调用响应...")
+        start_time = time.time()
+
+        # 读取多行响应，直到找到 JSON 响应
+        tool_response = ""
+        timeout = 30  # 30秒超时
+        while time.time() - start_time < timeout:
+            line = process.stdout.readline()
+            if not line:
+                time.sleep(0.1)
+                continue
+
+            tool_response += line
+            print(f"收到响应行: {repr(line)}")
+
+            # 检查是否是 JSON 响应
+            try:
+                json.loads(line.strip())
+                break
+            except json.JSONDecodeError:
+                continue
+
+        end_time = time.time()
+        response_time = end_time - start_time
+        response_length = len(tool_response)
+
+        print(f"工具调用响应时间: {response_time:.2f} 秒")
+        print(f"工具调用响应长度: {response_length} 字符")
+        print(f"原始响应内容: {repr(tool_response)}")
+
+        # 尝试解析 JSON 响应
+        json_response = None
+        for line in tool_response.split("\n"):
+            if line.strip().startswith('{"jsonrpc"'):
+                try:
+                    json_response = json.loads(line.strip())
+                    break
+                except json.JSONDecodeError:
+                    continue
+
+        if json_response:
+            print("✅ 成功解析 JSON 响应")
+            print(f"响应 ID: {json_response.get('id')}")
+            if "result" in json_response:
+                print("✅ 工具调用成功")
+            elif "error" in json_response:
+                print(f"❌ 工具调用失败: {json_response['error']}")
+        else:
+            print("⚠️ 未找到有效的 JSON 响应")
+
+        # 继续等待实际的工具调用响应
+        print("等待工具调用完成...")
+        time.sleep(5)  # 等待工具执行完成
+
+        # 读取工具调用的实际响应
+        actual_response = ""
+        while True:
+            line = process.stdout.readline()
+            if not line:
+                break
+            actual_response += line
+            print(f"工具响应行: {repr(line)}")
+
+            # 检查是否是 JSON 响应
+            try:
+                json.loads(line.strip())
+                break
+            except json.JSONDecodeError:
+                continue
+
+        if actual_response:
+            print(f"工具调用实际响应长度: {len(actual_response)} 字符")
+
+            # 尝试解析工具调用响应
+            tool_json_response = None
+            for line in actual_response.split("\n"):
+                if line.strip().startswith('{"jsonrpc"'):
+                    try:
+                        tool_json_response = json.loads(line.strip())
+                        break
+                    except json.JSONDecodeError:
+                        continue
+
+            if tool_json_response and "result" in tool_json_response:
+                result_content = tool_json_response["result"]
+                if "content" in result_content:
+                    content_text = str(result_content["content"])
+                    content_length = len(content_text)
+                    print(f"工具响应内容长度: {content_length} 字符")
+
+                    # 检查是否是摘要
+                    if "summary" in content_text.lower() or "摘要" in content_text:
+                        print("✅ 检测到摘要内容")
+                    else:
+                        print("📄 原始内容（未摘要）")
+                else:
+                    print("⚠️ 工具响应中没有 content 字段")
+            else:
+                print("⚠️ 无法解析工具调用响应")
+
+        return {
+            "hooks_enabled": hooks_enabled,
+            "response_time": response_time,
+            "response_length": response_length,
+            "success": True,
+        }
+
+    except Exception as e:
+        print(f"❌ 测试失败: {e}")
+        return {
+            "hooks_enabled": hooks_enabled,
+            "response_time": None,
+            "response_length": None,
+            "success": False,
+            "error": str(e),
+        }
+    finally:
+        # 清理进程
+        try:
+            process.terminate()
+            process.wait(timeout=5)
+        except Exception:
+            process.kill()
+
+
+def main():
+    """主函数"""
+    print("MCP stdio 模式 hooks 测试")
+    print("测试工具: OpenTargets_get_target_gene_ontology_by_ensemblID")
+    print("测试参数: ensemblId=ENSG00000012048")
+
+    # 测试关闭 hooks
+    result_no_hooks = run_stdio_test(hooks_enabled=False)
+
+    # 测试开启 hooks
+    result_with_hooks = run_stdio_test(hooks_enabled=True)
+
+    # 对比结果
+    print(f"\n{'='*60}")
+    print("测试结果对比")
+    print(f"{'='*60}")
+
+    print("关闭 hooks:")
+    if result_no_hooks["success"]:
+        print(
+            f"  ✅ 成功 - 响应时间: {result_no_hooks['response_time']:.2f}s, 长度: {result_no_hooks['response_length']} 字符"
+        )
+    else:
+        print(f"  ❌ 失败 - {result_no_hooks.get('error', '未知错误')}")
+
+    print("开启 hooks:")
+    if result_with_hooks["success"]:
+        print(
+            f"  ✅ 成功 - 响应时间: {result_with_hooks['response_time']:.2f}s, 长度: {result_with_hooks['response_length']} 字符"
+        )
+    else:
+        print(f"  ❌ 失败 - {result_with_hooks.get('error', '未知错误')}")
+
+    # 性能对比
+    if result_no_hooks["success"] and result_with_hooks["success"]:
+        time_diff = (
+            result_with_hooks["response_time"] - result_no_hooks["response_time"]
+        )
+        length_diff = (
+            result_with_hooks["response_length"] - result_no_hooks["response_length"]
+        )
+
+        print("\n性能对比:")
+        print(
+            f"  时间差异: {time_diff:+.2f}s ({'hooks 更慢' if time_diff > 0 else 'hooks 更快'})"
+        )
+        print(
+            f"  长度差异: {length_diff:+d} 字符 ({'hooks 更长' if length_diff > 0 else 'hooks 更短'})"
+        )
+
+        if abs(time_diff) < 1.0:
+            print("  ✅ 时间差异在可接受范围内")
+        else:
+            print("  ⚠️ 时间差异较大，需要进一步优化")
+
+
+if __name__ == "__main__":
+    main()

{tooluniverse-1.0.2.dist-info → tooluniverse-1.0.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: tooluniverse
-Version: 1.0.2
+Version: 1.0.4
 Summary: A comprehensive collection of scientific tools for Agentic AI, offering integration with the ToolUniverse SDK and MCP Server to support advanced scientific workflows.
 Author-email: Shanghua Gao <shanghuagao@gmail.com>
 Project-URL: Homepage, https://github.com/mims-harvard/TxAgent
@@ -18,6 +18,7 @@ Requires-Dist: networkx>=3.4.0
 Requires-Dist: openai>=1.107.0
 Requires-Dist: pyyaml>=6.0.0
 Requires-Dist: google-genai>=1.36.0
+Requires-Dist: google-generativeai>=0.7.2
 Requires-Dist: mcp[cli]>=1.9.3
 Requires-Dist: fastmcp>=2.12.0
 Requires-Dist: xmltodict>=1.0.0
@@ -63,7 +64,7 @@ Provides-Extra: all
 Requires-Dist: tooluniverse[dev,docs,graph]; extra == "all"
 Dynamic: license-file
 
-# ToolUniverse: Democratizing AI scientists
+# <img src="docs/_static/logo.png" alt="ToolUniverse Logo" height="28" style="vertical-align: middle; margin-right: 8px;" /> ToolUniverse: Democratizing AI scientists
 
 [![ToolUniverse-PIP](https://img.shields.io/badge/PyPI-ToolUniverse-blue)](https://pypi.org/project/tooluniverse/)
 [![ToolUniverse](https://img.shields.io/badge/Code-ToolUniverse-purple)](https://github.com/mims-harvard/ToolUniverse)
@@ -96,7 +97,7 @@ ToolUniverse is an ecosystem for creating AI scientist systems from any open or
 
 
 ## 🤖 Building AI Scientists with ToolUniverse in 5 minutes
-- **[Overview](https://zitniklab.hms.harvard.edu/bioagent/guide/building_ai_scientists/index.html)**: Create AI research assistants from any LLM
+- **[Overview](https://zitniklab.hms.harvard.edu/bioagent/guide/building_ai_scientists/index.html)**: Create AI scientists from any LLM
 - **[Claude Desktop Integration](https://zitniklab.hms.harvard.edu/bioagent/guide/building_ai_scientists/claude_desktop.html)**: Native MCP integration with Claude Desktop App
 - **[Claude Code Integration](https://zitniklab.hms.harvard.edu/bioagent/guide/building_ai_scientists/claude_code.html)**: AI scientist development in Claude Code environment
 - **[Gemini CLI Integration](https://zitniklab.hms.harvard.edu/bioagent/guide/building_ai_scientists/gemini_cli.html)**: Command-line scientific research with Google Gemini
@@ -109,7 +110,7 @@ ToolUniverse is an ecosystem for creating AI scientist systems from any open or
 
 AI scientists are emerging computational systems that serve as collaborative partners in discovery. However, these systems remain difficult to build because they are bespoke, tied to rigid workflows, and lack shared environments that unify tools, data, and analysts into a common ecosystem.
 
-ToolUniverse addresses this challenge by providing a standardized ecosystem that transforms any AI model into a powerful research scientist. By abstracting capabilities behind a unified interface, ToolUniverse wraps around any AI model (LLM, AI agent, or large reasoning model) and enables users to create and refine entirely custom AI research assistants without additional training or finetuning.
+ToolUniverse addresses this challenge by providing a standardized ecosystem that transforms any AI model into a powerful research scientist. By abstracting capabilities behind a unified interface, ToolUniverse wraps around any AI model (LLM, AI agent, or large reasoning model) and enables users to create and refine entirely custom AI scientists without additional training or finetuning.
 
 **Key Features:**
 
@@ -212,7 +213,7 @@ tooluniverse-smcp
 
 
 ---
-**Hypercholesterolemia Drug Discovery** [[Tutorial]]((https://zitniklab.hms.harvard.edu/bioagent/tutorials/tooluniverse_case_study.html)) [[Code]](https://colab.research.google.com/drive/1UwJ6RwyUoqI5risKQ365EeFdDQWOeOCv?usp=sharing)
+**Hypercholesterolemia Drug Discovery** [[Tutorial]](https://zitniklab.hms.harvard.edu/bioagent/tutorials/tooluniverse_case_study.html) [[Code]](https://colab.research.google.com/drive/1UwJ6RwyUoqI5risKQ365EeFdDQWOeOCv?usp=sharing)
 
 ---
 
@@ -316,4 +317,4 @@ ToolUniverse is developed by the [Zitnik Lab](https://zitniklab.hms.harvard.edu/
 
 ---
 
-*Democratizing AI agents for science - one tooluniverse at a time.*
+*Democratizing AI agents for science with ToolUniverse.*

{tooluniverse-1.0.2.dist-info → tooluniverse-1.0.4.dist-info}/RECORD

@@ -1,6 +1,6 @@
 tooluniverse/__init__.py,sha256=DXdZsB6gSGAubWpPjZDJZGo_PeH8l3BeJ-NeKsuY5Co,13944
 tooluniverse/admetai_tool.py,sha256=nEfq7dwvFqjDryKv3nivGoBSRap6LT7_m76iMu72Q6E,3009
-tooluniverse/agentic_tool.py,sha256=6qMPrcwVAjSobgmeuez3Dy6ZMgJCIkVrBdcMPuE44cU,23166
+tooluniverse/agentic_tool.py,sha256=y8M_6LzTGxrpndLms_M9-ycC10Ppp0S3EphExl5RrBo,20645
 tooluniverse/alphafold_tool.py,sha256=NkKQttC0MfuetCTTcWTFEG2MdhyKwy3jb5TR4odiqAw,4658
 tooluniverse/base_tool.py,sha256=uA-wGrs1drEJJbIp24YfWWWWfNGeMqEQo1tI6r3csEg,5664
 tooluniverse/boltz_tool.py,sha256=Kfcymeu6FRRpWLw7dWhEON4PUBTsHuBiTAPJlYH5ZGs,7930
@@ -16,13 +16,14 @@ tooluniverse/embedding_database.py,sha256=ua-yIyv3dPq2GHdyZmiwZyaUlkKYyV3nslB4H9
 tooluniverse/embedding_sync.py,sha256=Cq3g64MjNXXpiImrzPMNsCTvGZeEI9009OlHOD3EloI,14669
 tooluniverse/enrichr_tool.py,sha256=YXuHwoG_Hi-kUWK7cY_X21b5pbqoREdG7fJxKq050Jg,9472
 tooluniverse/europe_pmc_tool.py,sha256=aYTkDE_KMnpkYYMG5ojYZQ1QYsYB_Msf3pvNwY1Zz6w,1645
-tooluniverse/execute_function.py,sha256=kYmS-Efv1O-RtmeZaYL6TOq1yGtXRHX8KaYuQ8JYpyI,78094
+tooluniverse/execute_function.py,sha256=T5y0OQdsPyz0hvrl9pqIfWjPi2OBJ1fhpuDPzjlKPac,82979
 tooluniverse/extended_hooks.py,sha256=1Cg0rETh6_D21YFVqD-FhL7y4inZAGyQ6vMtHyugueg,15376
 tooluniverse/gene_ontology_tool.py,sha256=l89XYdBEBm3eN3dG0lR4oV01H16_9IUB6a2c7W_c7Lg,7180
 tooluniverse/graphql_tool.py,sha256=y7ztNyb9hn4OdSGKhLsHev_snkNgbAwJZL8ZGHm0LEk,8980
 tooluniverse/gwas_tool.py,sha256=hq4VhB93DhczZo0xRGjGS9AtdKWL0O_XQy3eoV_fi8E,12351
 tooluniverse/hpa_tool.py,sha256=siRA0usQ0Rggloy3VL1b56QlytabndXS8Xzc9H3uWs8,64998
 tooluniverse/humanbase_tool.py,sha256=xojNboYvFrW_LAzOzKaexp6tvyGSbUazpMfOvX5ETXY,15006
+tooluniverse/llm_clients.py,sha256=UPcK0H68ryEDdkuKgu17QNroIXmYa6eUu8XNfwHSmkM,14630
 tooluniverse/logging_config.py,sha256=SWM8TCrv0RZJZbC8NNwy8h04V9BvqSVyzwJFcW43eFI,7212
 tooluniverse/mcp_client_tool.py,sha256=R2WWAbnjzCFEKfeddTvtZTSZqtnvKRayV2ha2xdV9EU,28741
 tooluniverse/mcp_integration.py,sha256=9VtFDFbcVIuKO_sd1gFrOd-R0r6uxlYRjdsOKiqV1zs,13912
@@ -31,7 +32,7 @@ tooluniverse/medlineplus_tool.py,sha256=__D7W2Khl05WllMnoV4Owv3pyl5EXS1lzEJmAE7P
 tooluniverse/openalex_tool.py,sha256=cR6K4ycFTarXxkNM_Rm2ULNu3K4QJX0ukK-7YVZiLcg,8066
 tooluniverse/openfda_adv_tool.py,sha256=t5kffba0iNDVtFHYPtfLW8ql4dKLaWwdcFnE9cNmNWE,10168
 tooluniverse/openfda_tool.py,sha256=AetafmFr1IygGAL8p1-URsNahVdN52tN0FvToTlkcMw,27425
-tooluniverse/output_hook.py,sha256=kxb8BXgo_CH6J9n-bYtM3WfCDranUu0uG3lVt_nOCOg,42734
+tooluniverse/output_hook.py,sha256=2f95WFXA9DC6-HV4uJb8ZJAF-VmlmM2DPVvG2up_4EE,46279
 tooluniverse/package_tool.py,sha256=Ri-TPc_jTY3olHjPsMkEe2z45vknM7yynjtMXkh3Le8,8294
 tooluniverse/pubchem_tool.py,sha256=14C_5uz0RNzv5HaSAXHlq13TZLtlkhmJhr7RrjI91Yk,6415
 tooluniverse/pubtator_tool.py,sha256=WdFufeT3hY2lCq6vb9SLF44UYJ48PiZ1mf4bSfpI7mg,7151
@@ -41,7 +42,7 @@ tooluniverse/remote_tool.py,sha256=ywb5xaJBqOT38_r5FBVoF3QFQDcLvfOH5AQrT-g7Fcs,3
 tooluniverse/restful_tool.py,sha256=H7alq_vO3G4iVgZIZrrWh9vq2ForJN52Fl7_QOq7yaM,4409
 tooluniverse/semantic_scholar_tool.py,sha256=3gMHF-ReyNsP74oV7LzphhkhjYOX44F4JpnvIafaWPY,1970
 tooluniverse/smcp.py,sha256=D53npbXtNLN4snGpFyzU-jqyMVYt4MrpoA3DVNlStHo,99797
-tooluniverse/smcp_server.py,sha256=YKzSsevK0NF_GpqeVANHBaq0kQm-llxYDeBG_qFdYMU,34361
+tooluniverse/smcp_server.py,sha256=MfpamnRfn0P1YImIkmdIri7U_z4v2HOI0-NsBB3OySI,34598
 tooluniverse/tool_finder_embedding.py,sha256=O0WMCT6z7a_pDDew04QtpyPk_qzfGCX_647rsrBs0ug,11239
 tooluniverse/tool_finder_keyword.py,sha256=_Nt4-C1RranoywTk8vi6MePWPoNqFwOhafMDiTYl_SU,23480
 tooluniverse/tool_finder_llm.py,sha256=W63BDow6ioWQJgkpuhS3f0f4lb48uT_Jzc_bTqhBKE8,27361
@@ -57,16 +58,16 @@ tooluniverse/compose_scripts/biomarker_discovery.py,sha256=Im7SO1boySOVAcOz5JtuN
 tooluniverse/compose_scripts/comprehensive_drug_discovery.py,sha256=k5aoTkC5bTneM9asOuYKz0dCwewVv2kWOXUdS_CAoOc,8588
 tooluniverse/compose_scripts/drug_safety_analyzer.py,sha256=4lmGYY8a4T4WbeHIUG1aAtxowk3SFnJNEtndCTmnJfk,3164
 tooluniverse/compose_scripts/literature_tool.py,sha256=8-NITTQHj6vdn-vo_d0W8l6Ed8bvDTkDOJ7yvhaE-lI,976
-tooluniverse/compose_scripts/output_summarizer.py,sha256=P6wS5dRePJfWaU5Rh9S-uPenRK-_uvem26Em3xeq6FA,9945
+tooluniverse/compose_scripts/output_summarizer.py,sha256=dCT9GAcplaaIWuOjF9uJTVer7z-xbclb2V9tqR1BPAY,10331
 tooluniverse/compose_scripts/tool_description_optimizer.py,sha256=L6Kd8e6Af8pD6dy8jrFzJq5jq-QNbg72gkQktn8IDBE,32175
 tooluniverse/compose_scripts/tool_discover.py,sha256=RKzCmhDWzDCsAl2KCcEQRNH96mOf_2bTQOH2EVGvpC8,24976
 tooluniverse/compose_scripts/tool_graph_composer.py,sha256=lmGeN94Mc9SZCeYo8ez55tKYLS1-dI3JDm-onKB5DZA,15566
 tooluniverse/compose_scripts/tool_graph_generation.py,sha256=zPVN58GufflVCo8Ak3V9_DpNjS9oLrhQ5A_JCN9TCzY,10052
-tooluniverse/compose_scripts/tool_metadata_generator.py,sha256=GCd_zKxN5n7vz_5Zlj7nP2KpGzfi0baRfOnKt9ZQsRI,19004
+tooluniverse/compose_scripts/tool_metadata_generator.py,sha256=JAcLhXnmsZMzRjNRFM1fsxBtkjgY92LTzMGpgEq4s2k,19235
 tooluniverse/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tooluniverse/data/admetai_tools.json,sha256=08LCNSCZJxL6ZuPF1mVfbdlh9f2X5tnEwIYU7RcLLSM,6497
 tooluniverse/data/adverse_event_tools.json,sha256=EDU_X8r4YtMnVt7SJpyimdo3FlcSNFSdvckWLShDODA,12752
-tooluniverse/data/agentic_tools.json,sha256=2LVwit3QqoHQRja2f_8KvRh9evyIV62fpYqo4WyiIeM,103309
+tooluniverse/data/agentic_tools.json,sha256=ABlMWxS06u-xqGHEDDEizUpprQ4MfDg1NXSKSWTo8x4,103299
 tooluniverse/data/alphafold_tools.json,sha256=--JO9z9fQM95t5dphrBoKKr28HKWg7iQOUm1hQYhEOk,10628
 tooluniverse/data/boltz_tools.json,sha256=_pMSRBkO3uj4vjYnQ7H6qbZFa4rzc9Looj6zHRyIkMg,303
 tooluniverse/data/chembl_tools.json,sha256=aQfFyFlUNz_y9ZTO3dNje4QGhqt7rLv6j5YdMJR2-x8,747
@@ -95,7 +96,7 @@ tooluniverse/data/medlineplus_tools.json,sha256=Jxy4Mqw6l6VYKfQ1sS54iR5SdDJFqVSr
 tooluniverse/data/monarch_tools.json,sha256=-uyhy-FlYBCmP0_biespZcuBHwcvOPmxX4gNYnTmgMU,3568
 tooluniverse/data/openalex_tools.json,sha256=6y-1rqRAwR8dzxT3E5sroTdzfl4OVJMxdLSPcIBb-vQ,1736
 tooluniverse/data/opentarget_tools.json,sha256=IZGLUbQWC--u_DSNoGGMtI9V9YFxucHB1ESqglJWCY8,67795
-tooluniverse/data/output_summarization_tools.json,sha256=9NXb3MT3LnbjaIM6U5i2cQTdbNwukrF_zM4o5Xf7lwc,3942
+tooluniverse/data/output_summarization_tools.json,sha256=9BxZAkzexsDp8jGMKUHW3LIRThZjleRjYRvk0y-bxEs,3944
 tooluniverse/data/pubchem_tools.json,sha256=_q3sov5n2fGhBT43gzfqSjsjT1uc_itiF9HT2UV3jFU,12695
 tooluniverse/data/pubtator_tools.json,sha256=WkcP3DFlC6EcL9zf2KMrDITC0_fYPNTu60by0RJBdVI,2511
 tooluniverse/data/rcsb_pdb_tools.json,sha256=gKY8Y9QDN4-3ILc2KFLGdPFXG1M9LhXMAPFQtwnP7Bg,47767
@@ -135,12 +136,16 @@ tooluniverse/remote/pinnacle/pinnacle_tool.py,sha256=Oprd2RyMCZF-NsMjkZMpPOB2apC
 tooluniverse/remote/transcriptformer/transcriptformer_tool.py,sha256=ZU_TT340LBwjTuowTaQV6QcANcsjYimA4CVSJHdU0c0,25229
 tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py,sha256=gsfs-a3RZ7kwauO3uWNJjEOEi2ctHva3iRUtEYqjS6U,2352
 tooluniverse/remote/uspto_downloader/uspto_downloader_tool.py,sha256=hkDmSVh2-KEc56YhmgtwrgIwkYMFXR2fN1jrIL9vVlk,4460
+tooluniverse/scripts/filter_tool_files.py,sha256=IZZIeSmBfHKntno790er1hQHSDcrxfdIHZwZ-Lvq7I4,6415
 tooluniverse/scripts/generate_tool_graph.py,sha256=X_TpGcJ29CFH49Djzsz4gs8VvjDe0CcF6KFWU_hJHDI,12727
 tooluniverse/scripts/visualize_tool_graph.py,sha256=4USGnUVdffJfOxourBKELldGhhk5HV7ZeHHREhyKqOc,25812
+tooluniverse/test/list_azure_openai_models.py,sha256=lemS5fSmt1jdJ04dwL--YUJ50Fc9E2G1LpUG8nKfaTg,7680
 tooluniverse/test/mcp_server_test.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tooluniverse/test/test_admetai_tool.py,sha256=Z_J-LjPgvqsdWpHvXwq24rt2e3Pg3IIp6t4XWUmBPoA,31991
 tooluniverse/test/test_agentic_tool.py,sha256=vMU6uxU0rB6DaYL105XY4euU9VOWWXR3c-qGzMzhHkU,5803
+tooluniverse/test/test_agentic_tool_azure_models.py,sha256=2T3R_rm2jZ-tVe8b_3RI2CvYxY9mq0Yq28hEi1LtFas,2460
 tooluniverse/test/test_alphafold_tool.py,sha256=Hj-ITZqWO-U8OVNveVtmLVACiOAzwUYh1COwjcIaxrQ,3459
+tooluniverse/test/test_api_key_validation_min.py,sha256=esWQywax1fSLvinZ_LXbLVVqUxstqmlkIV0ZfAj7sPg,1976
 tooluniverse/test/test_chem_tool.py,sha256=N_ARBvouWyJMgWL1yMXSg1w407fBB-CZxJysFVRE6uY,1589
 tooluniverse/test/test_compose_lieraturereview.py,sha256=qNkgXHXJm7Ekiw9e0mcgtqs1z5c-MeE3qy0RoexF9Tg,1956
 tooluniverse/test/test_compose_tool.py,sha256=reRhUWhSuWwuorWF0jbDQHhIEd14UTq_GDSe0Wwl0v4,16607
@@ -154,10 +159,13 @@ tooluniverse/test/test_europe_pmc_tool.py,sha256=zcd-1aTB25Vkm-FOfGXyqTRBPKoeVOn
 tooluniverse/test/test_fda_adv.py,sha256=kP9YvZ1i8TzL-oDMwaQvvuryAEsp2yaD60ViAj0B3Sw,8141
 tooluniverse/test/test_fda_drug_labeling.py,sha256=O655Pcvyx9_d_grHSIYqYVxprvqpy_Ih4Ax43tLM1Xc,7875
 tooluniverse/test/test_gene_ontology_tools.py,sha256=b9adyK5s7EF3Ij_onp8RAfNH7UgC3vsVgZwbEBxQ8Ek,2364
+tooluniverse/test/test_global_fallback.py,sha256=AEvDUJwMPgvvLusTnxuEESsRjvMGgYLoR4h3bdYIYR4,10845
 tooluniverse/test/test_gwas_tool.py,sha256=_VXaf8K_1uO-oKlacJP6VTt4u5cjtX3w92G_eQBucvE,4961
+tooluniverse/test/test_hooks_direct.py,sha256=T_mzUYASXfhPX2S_3j9CCD9AHXXkVloup36_3EDKgSo,6389
 tooluniverse/test/test_hpa.py,sha256=53lx0rXx0-aT1LRm9IEeBbV5cXaYlp3Ol5bmeRz10Hc,30006
 tooluniverse/test/test_humanbase_tool.py,sha256=4KQnaehJwGtePEwb5my3yldZnMWQHfvCGEpzm-AWLH0,564
 tooluniverse/test/test_idmap_tools.py,sha256=bP_AKhZG1lX9vQKrrrzuZ1iXIMWIWjAriB66pbFCE5M,1743
+tooluniverse/test/test_list_built_in_tools.py,sha256=fLnCHCwoF1kWd28joMPwrYXi0b1e8EqfuIVq6GzZCvA,1035
 tooluniverse/test/test_mcp_server.py,sha256=n3C3UuU9D-E6m6PbooWUgWwshLzncXDEmn0U9ugapaY,6631
 tooluniverse/test/test_mcp_tool.py,sha256=q6a9MCjFggK6KRy8F9h14tV2BezNVj63v6tDFaST-ys,8290
 tooluniverse/test/test_medlineplus.py,sha256=hQ2QyeHmF8BkCXMn9vW0SNImAcqd5jkZz_FhaZbZS7A,7332
@@ -169,6 +177,7 @@ tooluniverse/test/test_rcsb_pdb_tool.py,sha256=bLI5zSWSZiyTmG_yyLf3mkroI6MZVnnp9
 tooluniverse/test/test_reactome.py,sha256=X3lV4z5sjYnpO3ntH6wc9DluKHgB6GL0z5j7YavFrtA,1784
 tooluniverse/test/test_semantic_scholar_tool.py,sha256=7ZQOIqivfIMc7yPCzGwWGrxNphvYHK_fZAlrdUAEzKE,705
 tooluniverse/test/test_software_tools.py,sha256=fJeS_9k-cysYzsic75QrQAC_bNxWRVk_vazoldNz0KA,5781
+tooluniverse/test/test_stdio_hooks.py,sha256=UDuZCOM7Rcz2hYQdCFwJDXgoth5qLMlHLMxp55pYNVQ,9187
 tooluniverse/test/test_tool_description_optimizer.py,sha256=CuuxSYfb8kHjz9fHmJ8bGhpAIAmqIvUb6mYrt1H5F64,1320
 tooluniverse/test/test_tool_finder.py,sha256=6piRAEMR-9dKr2zaurRZd4dqZLpDMbach4jrq1fgP-c,741
 tooluniverse/test/test_tool_finder_llm.py,sha256=nZTYavGePiNt5Z2smmNLhkO3dz-_P_RcUTv8J1vDzVs,8997
@@ -176,9 +185,9 @@ tooluniverse/test/test_tools_find.py,sha256=vP9EV04iXXmejoY2rDhEM0Yc9uHEO2qEmd8s
 tooluniverse/test/test_uniprot_tools.py,sha256=V0x7aQjjlE-wS5alFWviHNwC3saHiEE5pMMqAcbokaw,2582
 tooluniverse/test/test_uspto_tool.py,sha256=y2VQBMbiHCTAmvXhBosHrc1innstUl9UMWNoPaBv-RY,2311
 tooluniverse/test/test_xml_tool.py,sha256=tx-w_psZ801C2kM6aDbBzR8QV3Vgu1p2zP6zExhjpVs,3602
-tooluniverse-1.0.2.dist-info/licenses/LICENSE,sha256=Unq9Y3buGL9J0vFop03FYZiVweytt1xdgLIh2n9ck2c,1115
-tooluniverse-1.0.2.dist-info/METADATA,sha256=SEmSfNFe6gFqwsmk5IyQbtAF2EVknHL2nm7Y7McWUUM,18270
-tooluniverse-1.0.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-tooluniverse-1.0.2.dist-info/entry_points.txt,sha256=Z_znqzUc_XR9ZIXViavqNAwBkwM4XYfC9h7LoBbAAog,600
-tooluniverse-1.0.2.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
-tooluniverse-1.0.2.dist-info/RECORD,,
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+tooluniverse-1.0.4.dist-info/entry_points.txt,sha256=Z_znqzUc_XR9ZIXViavqNAwBkwM4XYfC9h7LoBbAAog,600
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+tooluniverse-1.0.4.dist-info/RECORD,,