tooluniverse 1.0.0__py3-none-any.whl → 1.0.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of tooluniverse might be problematic. Click here for more details.

Files changed (11) hide show
  1. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/METADATA +11 -1
  2. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/RECORD +7 -11
  3. tooluniverse/data/packages/software_tools.json +0 -4954
  4. tooluniverse/remote/expert_feedback_mcp/human_expert_mcp_server.py +0 -1611
  5. tooluniverse/remote/expert_feedback_mcp/simple_test.py +0 -34
  6. tooluniverse/remote/expert_feedback_mcp/start_web_interface.py +0 -91
  7. /tooluniverse/data/{clait_tools.json → adverse_event_tools.json} +0 -0
  8. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/WHEEL +0 -0
  9. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/entry_points.txt +0 -0
  10. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/licenses/LICENSE +0 -0
  11. {tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/top_level.txt +0 -0
{tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: tooluniverse
3
- Version: 1.0.0
3
+ Version: 1.0.1
4
4
  Summary: A comprehensive collection of scientific tools for Agentic AI, offering integration with the ToolUniverse SDK and MCP Server to support advanced scientific workflows.
5
5
  Author-email: Shanghua Gao <shanghuagao@gmail.com>
6
6
  Project-URL: Homepage, https://github.com/mims-harvard/TxAgent
@@ -145,8 +145,18 @@ pip install tooluniverse
145
145
  git clone https://github.com/mims-harvard/ToolUniverse.git
146
146
  cd ToolUniverse
147
147
  uv sync # or pip install -e .[dev]
148
+
149
+ # Auto-setup pre-commit hooks
150
+ ./setup_precommit.sh
148
151
  ```
149
152
 
153
+ **Pre-commit Hooks:**
154
+ Pre-commit hooks ensure code quality on every commit:
155
+ - **Code formatting** with Black
156
+ - **Linting** with flake8 and ruff
157
+ - **Import cleanup** with autoflake
158
+ - **File validation** (YAML, TOML, AST checks)
159
+
150
160
  → **Complete Installation Tutorial**: [Installation Tutorial](https://zitniklab.hms.harvard.edu/bioagent/installation.html)
151
161
 
152
162
  ## 🔧 Usage & Integration
{tooluniverse-1.0.0.dist-info → tooluniverse-1.0.1.dist-info}/RECORD RENAMED
@@ -63,11 +63,11 @@ tooluniverse/compose_scripts/tool_discover.py,sha256=RKzCmhDWzDCsAl2KCcEQRNH96mO
63
63
  tooluniverse/compose_scripts/tool_graph_composer.py,sha256=lmGeN94Mc9SZCeYo8ez55tKYLS1-dI3JDm-onKB5DZA,15566
64
64
  tooluniverse/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
65
65
  tooluniverse/data/admetai_tools.json,sha256=08LCNSCZJxL6ZuPF1mVfbdlh9f2X5tnEwIYU7RcLLSM,6497
66
+ tooluniverse/data/adverse_event_tools.json,sha256=EDU_X8r4YtMnVt7SJpyimdo3FlcSNFSdvckWLShDODA,12752
66
67
  tooluniverse/data/agentic_tools.json,sha256=er40nXt19HS4S3N6jbpRmTPhprBbAsWwRB2lhngFsAI,89865
67
68
  tooluniverse/data/alphafold_tools.json,sha256=1q0nB2DXyAPQxLoRXWnkFKYBgLW9AGAGMP7qqOuOx7A,2678
68
69
  tooluniverse/data/boltz_tools.json,sha256=_pMSRBkO3uj4vjYnQ7H6qbZFa4rzc9Looj6zHRyIkMg,303
69
70
  tooluniverse/data/chembl_tools.json,sha256=aQfFyFlUNz_y9ZTO3dNje4QGhqt7rLv6j5YdMJR2-x8,747
70
- tooluniverse/data/clait_tools.json,sha256=EDU_X8r4YtMnVt7SJpyimdo3FlcSNFSdvckWLShDODA,12752
71
71
  tooluniverse/data/clinicaltrials_gov_tools.json,sha256=_3NphPP_9cLviktCNnfsoSo_EHIkKA4lDTmuSycQJ58,16102
72
72
  tooluniverse/data/compose_tools.json,sha256=LyiugKvAzfCMs02ZkY7EHbk92UzaSdDcFocaGuVS8xU,7793
73
73
  tooluniverse/data/dailymed_tools.json,sha256=F7zSeK6MM9eGKUXZpyeVNFD1UkOkd-0OoxmTlgnEffg,2059
@@ -120,7 +120,6 @@ tooluniverse/data/packages/original_tools.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
120
120
  tooluniverse/data/packages/physics_astronomy_tools.json,sha256=n0ovkqOXhUcDBUPDGNKrCs3NbYJOcnOEADXCafgI4SE,1527
121
121
  tooluniverse/data/packages/scientific_computing_tools.json,sha256=YhGZIvllzmesF2Pm_OnIY6EVgVJ36nqvQN8Pvno-5BY,28300
122
122
  tooluniverse/data/packages/single_cell_tools.json,sha256=HxHygdgtQM6kObnPdCqUTSwNI8Cux1LoOeYXuxxjjtw,36069
123
- tooluniverse/data/packages/software_tools.json,sha256=y9wb3dts-aQW7RxBDL7EHLSl2vNBuw5LW8nL7VZ6IFU,460958
124
123
  tooluniverse/data/packages/structural_biology_tools.json,sha256=tQw78Ot6i9PWGUX3yVsZOgeOqZOhqTeh9mQVahZaUec,31755
125
124
  tooluniverse/data/packages/visualization_tools.json,sha256=yS-M_H3px6Ea-De-Km8v_gVMPa2Vdt6LmAPU-Zsai3c,25177
126
125
  tooluniverse/remote/boltz/boltz_mcp_server.py,sha256=oAqO8j52M4ntn1Ihdjclj6nJwHxRTbyxIF6efi_G_jU,2088
@@ -129,9 +128,6 @@ tooluniverse/remote/expert_feedback/human_expert_mcp_tools.py,sha256=WeXuIjus7bs
129
128
  tooluniverse/remote/expert_feedback/simple_test.py,sha256=rv_UN4oHH6BNmYVuPKRfPdIEjtdFvG0MXYoNOIHqXvg,535
130
129
  tooluniverse/remote/expert_feedback/start_web_interface.py,sha256=_As-c4HRx9nBb_xjiO040HMj7v8RwIB2f9yT1W4f0Yo,6136
131
130
  tooluniverse/remote/expert_feedback/web_only_interface.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
132
- tooluniverse/remote/expert_feedback_mcp/human_expert_mcp_server.py,sha256=hsI7npDj142_YlLjPfCWE3RYzgrB6hCx_L26StoiDTE,59973
133
- tooluniverse/remote/expert_feedback_mcp/simple_test.py,sha256=tBLjIUhULLBB_sKjf_2hsm9IQkMjcI4Tf4p34ZUen_w,913
134
- tooluniverse/remote/expert_feedback_mcp/start_web_interface.py,sha256=OYnEhU_sHQlUKKxF6HJoJbn220HFws7eS47QVDF9ESg,2738
135
131
  tooluniverse/remote/immune_compass/compass_tool.py,sha256=jpxfMNDH7UWF4FiFzLB-JyfQYNUB8ZA6somvqkEtDH0,14423
136
132
  tooluniverse/remote/pinnacle/pinnacle_tool.py,sha256=Oprd2RyMCZF-NsMjkZMpPOB2apCfws7C3IWIn_U3JxQ,14632
137
133
  tooluniverse/remote/transcriptformer/transcriptformer_tool.py,sha256=ZU_TT340LBwjTuowTaQV6QcANcsjYimA4CVSJHdU0c0,25229
@@ -178,9 +174,9 @@ tooluniverse/test/test_tools_find.py,sha256=vP9EV04iXXmejoY2rDhEM0Yc9uHEO2qEmd8s
178
174
  tooluniverse/test/test_uniprot_tools.py,sha256=V0x7aQjjlE-wS5alFWviHNwC3saHiEE5pMMqAcbokaw,2582
179
175
  tooluniverse/test/test_uspto_tool.py,sha256=y2VQBMbiHCTAmvXhBosHrc1innstUl9UMWNoPaBv-RY,2311
180
176
  tooluniverse/test/test_xml_tool.py,sha256=tx-w_psZ801C2kM6aDbBzR8QV3Vgu1p2zP6zExhjpVs,3602
181
- tooluniverse-1.0.0.dist-info/licenses/LICENSE,sha256=Unq9Y3buGL9J0vFop03FYZiVweytt1xdgLIh2n9ck2c,1115
182
- tooluniverse-1.0.0.dist-info/METADATA,sha256=Np2joe8Nr0P2OclPRLMuoxZsR4G2eKnnX6S5XHE-Hfs,19452
183
- tooluniverse-1.0.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
184
- tooluniverse-1.0.0.dist-info/entry_points.txt,sha256=Z_znqzUc_XR9ZIXViavqNAwBkwM4XYfC9h7LoBbAAog,600
185
- tooluniverse-1.0.0.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
186
- tooluniverse-1.0.0.dist-info/RECORD,,
177
+ tooluniverse-1.0.1.dist-info/licenses/LICENSE,sha256=Unq9Y3buGL9J0vFop03FYZiVweytt1xdgLIh2n9ck2c,1115
178
+ tooluniverse-1.0.1.dist-info/METADATA,sha256=aW1bG6K-ONdBC3h2Iu1qu7tEq15Dkv8zkCAb7gfXvPs,19732
179
+ tooluniverse-1.0.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
180
+ tooluniverse-1.0.1.dist-info/entry_points.txt,sha256=Z_znqzUc_XR9ZIXViavqNAwBkwM4XYfC9h7LoBbAAog,600
181
+ tooluniverse-1.0.1.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
182
+ tooluniverse-1.0.1.dist-info/RECORD,,