tomwer 1.4.7__py3-none-any.whl → 1.4.9__py3-none-any.whl

orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py

@@ -1,30 +1,54 @@
-from __future__ import annotations
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "14/10/2021"
+
 
 import time
 
 from orangewidget import gui
-
-# from orangewidget.widget import Input, Output, OWBaseWidget
-from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
-from ewokscore.missing_data import MISSING_DATA
-from ewoksorange.gui.orange_imports import Input
-
+from orangewidget.settings import Setting
+from orangewidget.widget import Input, Output, OWBaseWidget
 from processview.core.manager import DatasetState, ProcessManager
 from processview.core.superviseprocess import SuperviseProcess
 from silx.gui import qt
 from silx.gui.utils.concurrent import submitToQtMainThread
 
 from tomwer.core.futureobject import FutureTomwerObject
+from tomwer.core.scan.scanbase import TomwerScanBase
+from tomwer.core.volume.volumebase import TomwerVolumeBase
 from tomwer.gui.cluster.supervisor import (
     FutureTomwerScanObserverWidget as _FutureTomwerScanObserverWidget,
 )
-from tomwer.core.process.cluster.supervisor import FutureSupervisorTask
+from tomwer.core.process.drac.processeddataset import DracReconstructedVolumeDataset
+from tomwer.core.volume.volumefactory import VolumeFactory
 
 
-class FutureSupervisorOW(
-    TomwerWithStackStack,
-    ewokstaskclass=FutureSupervisorTask,
-):
+class FutureSupervisorOW(OWBaseWidget, openclass=True):
     """
     Orange widget to define a slurm cluster as input of other
     widgets (based on nabu for now)
@@ -51,9 +75,10 @@ class FutureSupervisorOW(
     want_control_area = False
     resizing_enabled = True
 
+    _ewoks_default_inputs = Setting(dict())
+
     class Inputs:
-        # redefine the input to allow multiple and default
-        future_tomo_obj = Input(
+        future_in = Input(
             name="future_tomo_obj",
             type=FutureTomwerObject,
             doc="data with some remote processing",
@@ -61,6 +86,15 @@ class FutureSupervisorOW(
             default=True,
         )
 
+    class Outputs:
+        data = Output(name="data", type=TomwerScanBase)
+        volume = Output(name="volume", type=TomwerVolumeBase)
+        data_portal_processed_datasets = Output(
+            name="data_portal_processed_datasets",
+            type=tuple,
+            doc="data portal processed data to be saved",
+        )
+
     def __init__(self, parent=None):
         super().__init__(parent)
         # gui
@@ -92,29 +126,36 @@ class FutureSupervisorOW(
             raise TypeError(
                 f"future_tomo_obj is expected to be an instance of {FutureTomwerObject} and not {type(future_tomo_obj)}"
             )
-        self._widget.removeFutureTomoObj(future_tomo_obj=future_tomo_obj)
-        self.execute_ewoks_task()
-
-    def handleNewSignals(self) -> None:
-        """Invoked by the workflow signal propagation manager after all
-        signals handlers have been called.
-
-        note: this widget can receive two signals: 'dataset' and 'colormap'. The 'colormap' is handled by
-              orange directly while the 'dataset' signal is handled by the ewoks task.
-              This function will be only triggered when the 'dataset' signal is send
-        """
-        # update GUI from received future_tomo_obj
-        # warning: this code will work because the task has only one input.
-        # so we can pass it directly to the widget.
-        # this won't be the case the task can have several input.
-        future_tomo_obj = self.get_task_input_value("future_tomo_obj", MISSING_DATA)
-        if future_tomo_obj is not MISSING_DATA:
-            self._widget.addFutureTomoObj(future_tomo_obj=future_tomo_obj)
+        self._futureHasBeenConverted(future_tomo_obj, future_tomo_obj.tomo_obj)
 
-    @Inputs.future_tomo_obj
+    @Inputs.future_in
     def add(self, future_tomo_obj, signal_id=None):
-        # required because today ewoksorange is not handling multiple inputs
-        self.set_dynamic_input("future_tomo_obj", future_tomo_obj)
+        if future_tomo_obj is not None:
+            self._widget.addFutureTomoObj(future_tomo_obj=future_tomo_obj)
+
+    def _futureHasBeenConverted(self, future_tomo_obj, tomo_obj):
+        # clean client to free resources
+        self._widget.removeFutureTomoObj(future_tomo_obj=future_tomo_obj)
+        if tomo_obj is not None:
+            if isinstance(tomo_obj, TomwerScanBase):
+                self.Outputs.data.send(tomo_obj)
+
+                def build_drac_dataset(vol_id):
+                    volume = VolumeFactory.create_tomo_object_from_identifier(vol_id)
+                    return DracReconstructedVolumeDataset(
+                        tomo_obj=volume,
+                        source_scan=tomo_obj,
+                    )
+
+                self.Outputs.data_portal_processed_datasets = tuple(
+                    [
+                        build_drac_dataset(vol_id=vol_id)
+                        for vol_id in tomo_obj.latest_vol_reconstructions
+                    ]
+                )
+
+            elif isinstance(tomo_obj, TomwerVolumeBase):
+                self.Outputs.volume.send(tomo_obj)
 
 
 class FutureTomwerObjectObserverWidget(

orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py

@@ -13,6 +13,9 @@ from tomwer.core.cluster.cluster import SlurmClusterConfiguration
 from tomwer.core.futureobject import FutureTomwerObject
 from tomwer.core.scan.scanbase import TomwerScanBase
 from tomwer.core.volume.volumebase import TomwerVolumeBase
+from tomwer.core.process.drac.processeddataset import (
+    DracReconstructedVolumeDataset,
+)
 from tomwer.gui.reconstruction.nabu.castvolume import CastVolumeWidget
 from tomwer.gui.utils.qt_utils import block_signals
 
@@ -101,6 +104,11 @@ class CastNabuVolumeOW(WidgetLongProcessing, SuperviseOW):
             type=FutureTomwerObject,
             doc="future object (process remotely)",
         )
+        data_portal_processed_datasets = Output(
+            name="data_portal_processed_datasets",
+            type=tuple,
+            doc="data portal processed data to be saved",
+        )
 
     def __init__(self, parent=None):
         """ """
@@ -193,11 +201,28 @@ class CastNabuVolumeOW(WidgetLongProcessing, SuperviseOW):
         if future_tomo_obj is not None:
             self.Outputs.future_tomo_obj.send(future_tomo_obj)
         if obj is not None:
+            scan = None
             if isinstance(obj, TomwerScanBase):
+                # case the input object was a scan (expected)
                 self.Outputs.data.send(obj)
+                scan = obj
             elif isinstance(obj, TomwerVolumeBase):
+                # case the input object was a volume
                 self.Outputs.volume.send(obj)
             # for now we store a cast_volume to the object but this is not very well design.
             # I guess this will be removed once we move to ewoks or we need to redesign the stack approach
             if obj.cast_volume is not None:
+                assert isinstance(obj.cast_volume, TomwerVolumeBase)
                 self.Outputs.cast_volume.send(obj.cast_volume)
+
+                if scan is not None:
+                    # case the input object was a scan and we have succeeded to cast the volume
+                    # then we can publish to the data portal
+                    icatReconstructedDataset = DracReconstructedVolumeDataset(
+                        tomo_obj=obj.cast_volume,
+                        source_scan=scan,
+                    )
+
+                    self.Outputs.data_portal_processed_datasets.send(
+                        (icatReconstructedDataset,)
+                    )

tomwer/app/canvas_launcher/utils.py

@@ -1,5 +1,6 @@
 from __future__ import annotations
 
+from importlib.metadata import version as get_version
 import tomoscan.version
 
 import ewokscore
@@ -7,6 +8,7 @@ import ewoksorange
 import tomwer.version
 import sluurp
 
+
 try:
     import nxtomomill.version
 except ImportError:
@@ -40,8 +42,15 @@ def get_tomotools_stack_versions() -> dict[str, str]:
     if has_nxtomomill:
         stack["nxtomomill"] = nxtomomill.version.version
     stack["tomoscan"] = tomoscan.version.version
-    stack["ewokscore"] = ewokscore.__version__
-    stack["ewoksorange"] = ewoksorange.__version__
+    try:
+        stack["ewokscore"] = ewokscore.__version__
+    except AttributeError:
+        stack["ewokscore"] = get_version("ewokscore")
+
+    try:
+        stack["ewoksorange"] = ewoksorange.__version__
+    except AttributeError:
+        stack["ewoksorange"] = get_version("ewoksorange")
     stack["sluurp"] = sluurp.__version__
 
     return stack

tomwer/core/process/control/datalistener/rpcserver.py

@@ -257,7 +257,7 @@ def send_signal_to_local_rpc_servers(signal, port: int, extended_find: bool = Tr
                         proc.send_signal(signal)
                         found = True
                         return
-            except (psutil.PermissionError, psutil.AccessDenied):
+            except (PermissionError, psutil.AccessDenied):
                 pass
     if not extended_find:
         return
@@ -272,5 +272,5 @@ def send_signal_to_local_rpc_servers(signal, port: int, extended_find: bool = Tr
                             f"process pid: {proc.pid} - {proc.name()} seems to be one occupying port {port}"
                         )
                         return
-            except (psutil.PermissionError, psutil.AccessDenied):
+            except (PermissionError, psutil.AccessDenied):
                 pass

tomwer/core/process/drac/processeddataset.py

@@ -10,6 +10,9 @@ from tomwer.core.process.reconstruction.nabu.plane import NabuPlane
 from tomwer.core.process.reconstruction.output import (
     PROCESS_FOLDER_RECONSTRUCTED_VOLUMES,
 )
+from tomwer.core.process.reconstruction.output import (
+    PROCESS_FOLDER_CAST_VOLUME,
+)
 
 
 __all__ = ["DracReconstructedVolumeDataset"]
@@ -145,3 +148,14 @@ class DracReconstructedVolumeDataset(DracDatasetBase):
             axis_folder,
             f"{basename}_capture_{axis.value}_{str(slice_index).zfill(6)}",
         )
+
+
+class DracCastReconstructedVolume(DracReconstructedVolumeDataset):
+    """
+    Class to associate casted - reconstructed volume(s) to an drac (processed) dataset
+    """
+
+    @property
+    def dataset_name(self) -> str:
+        """name to give to the drac (processed) dataset."""
+        return PROCESS_FOLDER_CAST_VOLUME

tomwer/core/process/reconstruction/nabu/castvolume.py

@@ -28,11 +28,17 @@ from tomwer.core.utils.slurm import get_slurm_script_name
 from tomwer.core.utils.volumeutils import volume_identifier_to_volume
 from tomwer.core.volume.volumebase import TomwerVolumeBase
 from tomwer.core.volume.volumefactory import VolumeFactory
+from tomwer.core.process.drac.processeddataset import (
+    DracReconstructedVolumeDataset,
+)
 
 _logger = logging.getLogger(__name__)
 
+CAST_VOLUME_WORKING_SUB_DIRECTORY = "cast_volume"
 
-DEFAULT_OUTPUT_DIR = "{volume_data_parent_folder}/cast_volume"
+DEFAULT_OUTPUT_DIR = (
+    "{volume_data_parent_folder}" f"/{CAST_VOLUME_WORKING_SUB_DIRECTORY}"
+)
 
 
 class CastVolumeTask(
@@ -46,6 +52,7 @@ class CastVolumeTask(
     output_names=(
         "volume",
         "future_tomo_obj",
+        "data_portal_processed_datasets",
     ),
 ):
     def __init__(
@@ -176,6 +183,7 @@ class CastVolumeTask(
                 scan.cast_volume = output_volume.get_identifier()
             else:
                 input_volume.cast_volume = output_volume.get_identifier()
+            self.outputs.data_portal_processed_datasets = tuple()
         # run volume cast remotely
         else:
 
@@ -186,7 +194,7 @@ class CastVolumeTask(
                 )
                 if overwrite:
                     command += " --overwrite"
-                command += f" --output_type={str(output_data_type)}"
+                command += f" --output-data-type={str(output_data_type)}"
                 if data_min is not None:
                     command += f" --data_min={data_min}"
                 if data_max is not None:
@@ -230,6 +238,14 @@ class CastVolumeTask(
             )
             self.outputs.volume = output_volume
 
+            if scan is not None:
+                drac_reconstructed_dataset = DracReconstructedVolumeDataset(
+                    tomo_obj=output_volume,
+                    source_scan=scan,
+                )
+                self.outputs.data_portal_processed_datasets = (
+                    drac_reconstructed_dataset,
+                )
             # for now at the task level we consider this is succeed if it has been submitted
             ProcessManager().notify_dataset_state(
                 dataset=scan or input_volume,

tomwer/core/process/reconstruction/output.py

@@ -16,6 +16,8 @@ PROCESS_FOLDER_RECONSTRUCTED_VOLUMES = "reconstructed_volumes"
 
 PROCESS_FOLDER_RECONSTRUCTED_SLICES = "reconstructed_slices"
 
+PROCESS_FOLDER_CAST_VOLUME = "cast_volume"
+
 
 class NabuOutputFileFormat(_Enum):
     TIFF = "tiff"

tomwer/core/scan/tests/test_process_registration.py

@@ -0,0 +1,64 @@
+# coding: utf-8
+from __future__ import annotations
+
+import shutil
+import tempfile
+import unittest
+
+from tomoscan.io import HDF5File, get_swmr_mode
+
+from tomwer.core.process.task import Task
+from tomwer.core.utils.scanutils import MockNXtomo
+
+
+class TestProcessRegistration(unittest.TestCase):
+    """
+    Make sure utils link to the process registration are
+    correctly working
+    """
+
+    class DummyProcess(Task):
+        @staticmethod
+        def program_name():
+            """Name of the program used for this processing"""
+            return "dummy program"
+
+        @staticmethod
+        def program_version():
+            """version of the program used for this processing"""
+            return "0.0.0"
+
+        @staticmethod
+        def definition():
+            """definition of the process"""
+            return "no definition"
+
+    def setUp(self):
+        self.tmp_dir = tempfile.mkdtemp()
+        self.scan = MockNXtomo(scan_path=self.tmp_dir, n_proj=2).scan
+
+    def tearDown(self):
+        shutil.rmtree(self.tmp_dir)
+
+    def testGetProcessNodes(self):
+        """insure it return the last dark process based on the processing index"""
+
+        for i in range(20):
+            Task._register_process(
+                self.scan.process_file,
+                process=self.DummyProcess,
+                entry=self.scan.entry,
+                configuration=None,
+                results={"output": i},
+                process_index=i,
+            )
+
+        with HDF5File(self.scan.process_file, "r", swmr=get_swmr_mode()) as h5f:
+            nodes = Task._get_process_nodes(
+                root_node=h5f[self.scan.entry], process=self.DummyProcess
+            )
+            self.assertEqual(len(nodes), 20)
+            self.assertTrue("/entry/tomwer_process_16" in nodes)
+            self.assertEqual(nodes["/entry/tomwer_process_16"], 16)
+            self.assertTrue("/entry/tomwer_process_1" in nodes)
+            self.assertEqual(nodes["/entry/tomwer_process_1"], 1)

tomwer/core/settings.py

@@ -90,7 +90,7 @@ class SlurmSettingsMode(_Enum):
 class SlurmSettings:
     # Default slurm cluster configuration
 
-    N_CORES_PER_TASK = 4
+    N_CORES_PER_TASK = 16
     """Number of CPU per worker"""
 
     N_TASKS = 1
@@ -130,13 +130,13 @@ class DefaultSlurmSettingsCastVolume(SlurmSettings):
     default proposed configuration for casting a volume remotely
     """
 
-    N_GPUS_PER_WORKER = 0
+    N_JOBS = 1
 
-    N_CORES_PER_TASK = 8
+    N_GPUS_PER_WORKER = 0
 
     MEMORY_PER_WORKER = 128  # memory in GB
 
-    PARTITION = "nice-long"
+    PARTITION = "nice"
 
 
 class DefaultSlurmSettingsSliceReconstruction(SlurmSettings):
@@ -144,19 +144,15 @@ class DefaultSlurmSettingsSliceReconstruction(SlurmSettings):
     default proposed configuration for reconstructing a single slice remotely
     """
 
-    MEMORY_PER_WORKER = 256  # memory in GB
-
-    PARTITION = None
+    N_JOBS = 1
 
+    N_GPUS_PER_WORKER = 1
 
-class DefaultSlurmSettingsVolumeReconstruction(SlurmSettings):
-    """
-    default proposed configuration for reconstructing a full volume remotely
-    """
+    MEMORY_PER_WORKER = 220  # memory in GB
 
-    MEMORY_PER_WORKER = 256  # memory in GB
 
-    PARTITION = None
+class DefaultSlurmSettingsVolumeReconstruction(DefaultSlurmSettingsSliceReconstruction):
+    pass
 
 
 class DefaultSlurmSettingsStitching(SlurmSettings):
@@ -164,8 +160,10 @@ class DefaultSlurmSettingsStitching(SlurmSettings):
     default proposed configuration for stitching
     """
 
-    N_JOBS = 15
+    N_CORES_PER_TASK = 8
 
-    PARTITION = "nice-long"
+    N_JOBS = 16
 
     N_GPUS_PER_WORKER = 0
+
+    PARTITION = "nice"

tomwer/tasks/reconstruction/cleardarkflat.py

@@ -0,0 +1,42 @@
+"""
+Contains task to clear reduced dark and flat frames
+"""
+
+from __future__ import annotations
+
+from tomoscan.scanbase import TomoScanBase as TomoscanScanBase
+
+from processview.core.manager import DatasetState, ProcessManager
+from processview.core.superviseprocess import SuperviseProcess
+
+from tomwer.tasks.task import Task
+from tomwer.core.scan.scanbase import TomwerScanBase
+from tomwer.core.scan.scanfactory import ScanFactory
+from tomwer.core.utils.scanutils import data_identifier_to_scan
+from tomwer.core.reconstruction.darkflat import params as dkrf_reconsparams
+from tomwer.utils import docstring
+
+
+class ClearReducedDarkAndFlat(
+    Task,
+    SuperviseProcess,
+    input_names=("data",),
+    output_names=("data",),
+):
+    """
+    Task to clear reduced darks and flats. Both on disk and on the object cache.
+    th goal of this task is to make sure the scan is cleared of any reduced frames to reprocess it later.
+    """
+
+    def run(self):
+        scan = self.inputs.data
+        if not isinstance(scan, TomoscanScanBase):
+            raise TypeError(
+                f"scan should be an instance of {TomoscanScanBase}. Got {type(scan)}"
+            )
+        scan.set_reduced_flats(None)
+        scan.reduced_flats_infos = None
+        scan.set_reduced_darks(None)
+        scan.reduced_darks_infos = None
+
+        self.outputs.data = scan

tomwer/version.py

@@ -77,7 +77,7 @@ RELEASE_LEVEL_VALUE = {
 
 MAJOR = 1
 MINOR = 4
-MICRO = 7
+MICRO = 9
 RELEV = "final"  # <16
 SERIAL = 0  # <16
 

{tomwer-1.4.7.dist-info → tomwer-1.4.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: tomwer
-Version: 1.4.7
+Version: 1.4.9
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: Henri Payno, Pierre Paleo, Pierre-Olivier Autran, Jérôme Lesaint, Alessandro Mirone

{tomwer-1.4.7.dist-info → tomwer-1.4.9.dist-info}/RECORD

@@ -26,7 +26,7 @@ orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows,sha256=kFGXGxc3eW7i
 orangecontrib/tomwer/tutorials/id16b/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/__init__.py,sha256=dX_TpkBh3mVsrj3EeGglEESsnZAEVq7V0Nb9bnBrb-8,1214
 orangecontrib/tomwer/widgets/utils.py,sha256=yq1wZfpfY3iVAhwMRBls57q02lhljO89WRKN7MxMMNg,983
-orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py,sha256=uvtstSQ3rRB_T0f734zPEZEelUQRe9btkjP7PJfj8zk,8176
+orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py,sha256=iFbgx5SeztXfxomL488rnR2MQJIS1OGSOTmsEKuEMa4,9865
 orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py,sha256=L_fX3EFyyx71Fg-FI8ab34ZPSUzrwKGJLcS2FnYCY_c,2565
 orangecontrib/tomwer/widgets/cluster/__init__.py,sha256=vOOJnIIaLWAj8tnxD9MRzWDyYgk-cyuBsN7QQ5FrIoQ,385
 orangecontrib/tomwer/widgets/cluster/icons/slurm.png,sha256=C-YBLwXCnh0oo4nvEt80WxX_jKYGUAFpWMUSlzt6ke0,1995
@@ -148,7 +148,7 @@ orangecontrib/tomwer/widgets/other/icons/hub.png,sha256=wnKSaxw2WnBkSQjI86aLZfdm
 orangecontrib/tomwer/widgets/other/icons/hub.svg,sha256=9EYoBKY-P-cO17nM48OPA9VDZSCbyGtrMRc80BGHflk,3735
 orangecontrib/tomwer/widgets/other/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/reconstruction/AxisOW.py,sha256=Qz6r34NdNgBvn-UwbIhPQDDCgtlXa_rSLnCEIuI_mrQ,20067
-orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py,sha256=E9hTJH_WfMsbOpKsGworVkqc16kWIRL1ajZbpnT_IAI,7614
+orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py,sha256=sqpWF769TJ07ApEMqdz0BUWiXoKnZ8k2Fg1yfBaqdIc,8668
 orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py,sha256=flRgeOXimjzKEtL6h-0hwaa04G-BqMydv0Ju5r0Reao,9696
 orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py,sha256=NjMC0BEmPhDZ795Q-yyL81-hluAyGE8MRiq8xMdqAqY,6233
 orangecontrib/tomwer/widgets/reconstruction/NabuOW.py,sha256=UvCNwpAtQ1AdCl5kUw13QsKxesIDV8SIjIW9cWCXIMc,9946
@@ -219,7 +219,7 @@ orangecontrib/tomwer/widgets/visualization/tests/__init__.py,sha256=47DEQpj8HBSa
 tomwer/__init__.py,sha256=cMIyH-uRxpa9WVnAuWjiBD7k9TK57WO21RzP_S-Mb8I,460
 tomwer/__main__.py,sha256=7tCADiS4u7k1PCxFhlRAcYSIOpxQTGUTx8sCEQ-hi1E,8707
 tomwer/utils.py,sha256=7h7dEgKAEUmQ43jkULvC1B9Adl55nkCty-SEKUKCl4U,7008
-tomwer/version.py,sha256=kSCzrMOEuSMZFSQbR90fj1YYaNmCYltkc0D3FMs6UT0,4386
+tomwer/version.py,sha256=2tlKJNuy_7mdqerRMwrXUS210Pm2p0BxM-HwT3_tfsU,4386
 tomwer/app/__init__.py,sha256=h1FKED7Tw5f99yikygt7ruXsdrxQhcJxO7kagLGxhJg,84
 tomwer/app/axis.py,sha256=lB-IZx1o6KTWLIelITvYCIu2flFTB9NhuIfD2MhUZZA,5826
 tomwer/app/canvas.py,sha256=y8rYOiwmv6ug7JcjgkOzEiGQnNXjKWNNmKofT0n8TFg,1538
@@ -249,14 +249,14 @@ tomwer/app/canvas_launcher/config.py,sha256=sLlsp7iy1s2IyxqvSohGbaOpPUP6syuj5P-8
 tomwer/app/canvas_launcher/environ.py,sha256=ljQyPL_u9ai1CWmmq8uGHbn437CZWyX4uJtrDIyabGk,2453
 tomwer/app/canvas_launcher/mainwindow.py,sha256=KZzbY3AuHITdaS8K4jG2QomD5DEgQqHRYcIe9hymC9g,22283
 tomwer/app/canvas_launcher/splash.py,sha256=cpUuZVKwlQbeAWfAqjpjP4q1v1MmkfxU6WWllLSVZo8,508
-tomwer/app/canvas_launcher/utils.py,sha256=4zWaao2EW5OcKomAw38YUIUgOLfkUPGdPCqLsfD1NMI,1031
+tomwer/app/canvas_launcher/utils.py,sha256=WfsCHAhiiv4-TUNodgyKJenVvmFWnxsy5OBwTBK2jKE,1279
 tomwer/app/canvas_launcher/widgetsscheme.py,sha256=9Or1KMmSxIs_dJmJGV0Xhjg9HH4m8aPGbtiEuK2i6q0,2744
 tomwer/app/stitching/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/stitching/common.py,sha256=TCXNnAz2MSJrrogB5iWptktxq-g5ED2FUt_jMnDXpnQ,14723
 tomwer/core/__init__.py,sha256=-EtD8J-a7WVnCgYS7WHkisYn61iM2PpHWcXwE5BetJ8,71
 tomwer/core/futureobject.py,sha256=8Sd9gOrdhYc0PvzPeZPBNOmaHuwB5epG6RJyABRsCmQ,5113
 tomwer/core/resourcemanager.py,sha256=VLNnVodMa-HOMZhN2qpUR_L6phJ8IHPUEPYMxuW6VHg,1067
-tomwer/core/settings.py,sha256=57qD44LU_3eB50rD7RHdg5nBweiHerzWbXHcBUna6gY,4089
+tomwer/core/settings.py,sha256=xMlOdWeNJxNsi0_qfMXZI8lrzjeRRDftGtT3lFpjFL8,3992
 tomwer/core/signal.py,sha256=I5TUcyeBZzrEh1SFGs-ylJSL1aBs41ZFb3IJo3O_55c,6115
 tomwer/core/tomwer_object.py,sha256=rIaD1QlN3Q0cR5h9Sap1Whn4lawu5z9zZ1KspdhYbg0,2023
 tomwer/core/cluster/__init__.py,sha256=w58VJZaGwC-8hwHLADeJrW9-rs-PrVz6few3AqpScqQ,116
@@ -286,7 +286,7 @@ tomwer/core/process/control/tomoobjseries.py,sha256=_fiVup4ugH5BAC6HwkIziA0QweEu
 tomwer/core/process/control/volumeselector.py,sha256=0uv1Q8k5Ms1h_iU-ldhb-Y35xsy1kHwQrbUQguV5M_A,370
 tomwer/core/process/control/datalistener/__init__.py,sha256=gSEeJEDX8E-8HzY7tmPc32QKfqSZHG4Ad06IxDrzOWo,52
 tomwer/core/process/control/datalistener/datalistener.py,sha256=kNDTIeMhJ6n019b2XWoGoB8zDCv-zpVxE7YDzZR9KBM,9606
-tomwer/core/process/control/datalistener/rpcserver.py,sha256=LS_4Uwuj7T9ADLSE8sr6i5KacaTVxQI_VxqPpz5dsUU,9569
+tomwer/core/process/control/datalistener/rpcserver.py,sha256=JkEmWB1kRzjaXPqzEu-tWN87SlK3uuk3gN7la42wSF0,9555
 tomwer/core/process/control/datawatcher/__init__.py,sha256=F9d_bGOr5iAPEfnKaf5XOEwQSR1wZp_wkzcDYNSuin4,50
 tomwer/core/process/control/datawatcher/datawatcher.py,sha256=UmOEW9vA3jJ93R1QcVRisknB_S2j0Nfsc7477VjwThE,15265
 tomwer/core/process/control/datawatcher/datawatcherobserver.py,sha256=q7ZB9WMWSyeEUtuU9SKuvJ80eBlFzLUC31NlLIYfWfk,24197
@@ -303,7 +303,7 @@ tomwer/core/process/drac/binning.py,sha256=uWIyAzQMhUjh5d74DUnbDgjRv4zMZtdbi6U0W
 tomwer/core/process/drac/dracbase.py,sha256=_EYcZscvNpLpSc6cuy6nmNKYWo2C8u6Ke_oXrLjOBiM,5639
 tomwer/core/process/drac/gallery.py,sha256=bQosh4xbTWj8Vn_vqepyJ1QMfLcVGxh7uPJ0ysLtx5o,4790
 tomwer/core/process/drac/output.py,sha256=ySwvMigBVvtQqrkG67jq384uevVKeOX-Vd8E2urs_Lg,235
-tomwer/core/process/drac/processeddataset.py,sha256=yWFfb7-CeYwLm1g8hYt7zVRgV_XNHXzfONxYPW8me0A,5425
+tomwer/core/process/drac/processeddataset.py,sha256=pp4uW249k7qFb1q1yZCtU1fbjoD9Y9onL5w3mOcxrWU,5839
 tomwer/core/process/drac/publish.py,sha256=S6UZ39Mv0I9A5bKQig5zohFenRPonu-oxK6DEUeAvD4,3845
 tomwer/core/process/drac/rawdataset.py,sha256=mB4sNTM1rx46n5whjIlY4xq1gz4_rbaS7yAS3QE2iT0,5175
 tomwer/core/process/drac/tests/test_gallery.py,sha256=WZaK42Y5S8sNrzgTToqctYvle8Xc1YBs3u6moei9ZMc,2319
@@ -316,7 +316,7 @@ tomwer/core/process/edit/nxtomoeditor.py,sha256=HUYInTVIUbqVtFXQKMCOpQ-tvgFz5w3U
 tomwer/core/process/edit/tests/test_darkflatpatch.py,sha256=0QOjUgiYkjuWDZvI5pkuiViK4HUJA5E2sXF5LXtf_vY,9366
 tomwer/core/process/edit/tests/test_imagekey_editor.py,sha256=ft-xDMRk6CRs7DehNEnh1uJ9gLKJ-SxZAb0GmsLek0w,2345
 tomwer/core/process/reconstruction/__init__.py,sha256=G_vePtIyh1WlXtcmOyQI3nRsP-F0bsaDSdLWHC0bVzo,159
-tomwer/core/process/reconstruction/output.py,sha256=_8kF_qhkXMW8f_u7xAi0u0KZLsD4GEiM6uaT7ZAco6g,4074
+tomwer/core/process/reconstruction/output.py,sha256=LMVH71rybFR1j-DTCo48k5M3feKuLBq9jE4n01qJAec,4118
 tomwer/core/process/reconstruction/params_cache.py,sha256=GTchgCH1Db7fuYsSGxSF6wCTeV5grlYQh5ab198nmOk,1527
 tomwer/core/process/reconstruction/paramsbase.py,sha256=6PjFcO0yYs_apgv2MImGSDLsBgQ7UeK2TSBLz28HYgc,6344
 tomwer/core/process/reconstruction/axis/__init__.py,sha256=VSQkN6M6JvM_c55OiboNyJUW8Zs1wkkQgv1JYmzvIr8,80
@@ -332,7 +332,7 @@ tomwer/core/process/reconstruction/darkref/darkrefscopy.py,sha256=D0i__aTsEvfJg_
 tomwer/core/process/reconstruction/darkref/params.py,sha256=vrDN8bZu28E4zLuHJzNvIIyyZq-4yhX9k9itXYCJ2iM,8756
 tomwer/core/process/reconstruction/darkref/settings.py,sha256=35jliuOIjMKTOJjgn4uiotcDEr6RskpLHfRWWLm76dc,188
 tomwer/core/process/reconstruction/nabu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/core/process/reconstruction/nabu/castvolume.py,sha256=4VEVnJxWfG8_Ku2uhUSQAgGfvP_08mXswmC3bHU7E4M,9317
+tomwer/core/process/reconstruction/nabu/castvolume.py,sha256=-tz0Kmf-3oJbWxPkFEZnvXTeF7dkiQKPaZ9qgcgD7MU,9950
 tomwer/core/process/reconstruction/nabu/helical.py,sha256=gauUkoPiShvnvMQrCQXv28g0yLe-GceML5kYMSXmNIg,1997
 tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=6jOdKpUW5MbRkf53evu4-ZBkQaNWMfl799-f0zQ9-1Q,24554
 tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=e5tRG1QtmVAdXb8KHMTMtBXA3KQXqKKcqipY2HzMURg,25275
@@ -416,6 +416,7 @@ tomwer/core/scan/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
 tomwer/core/scan/tests/test_edf.py,sha256=JI7wH5emdjlYl08OhmjIO_8mui7rHa-aRCUwmkCRyys,830
 tomwer/core/scan/tests/test_future_scan.py,sha256=tsF9p57dCOmW0fPyl6BP2lLSo0rRYRF6hSF-kryLMDM,848
 tomwer/core/scan/tests/test_nxtomoscan.py,sha256=w2mNuCsfWMl1b9jP_-vkTDkCD_z9oM02yx42f6-DzY8,4751
+tomwer/core/scan/tests/test_process_registration.py,sha256=g4Toef92SjxCBUE82MTbjonFJpc3PQqfpF6FSCarN5U,1988
 tomwer/core/scan/tests/test_scan.py,sha256=mHFPi2Tc7Z2_5rWvAp3YmObVSTB5yi-sTkHm1iOJlDo,12228
 tomwer/core/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/core/tests/test_scanutils.py,sha256=xWwd1nycVDWmFaIaL2gQ_xxrUMhVCARaNHI2SxT9NOI,844
@@ -847,6 +848,7 @@ tomwer/synctools/tests/test_darkRefs.py,sha256=1OgWaV-hgDmi4rkh0hxjCW_codBAnxNhp
 tomwer/synctools/tests/test_foldertransfer.py,sha256=ZFIJWSjgYAWw3ktzamid5DJZNnMkAV6Pj72dKG69cJc,12024
 tomwer/synctools/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/synctools/utils/scanstages.py,sha256=vIUKVDSfM2UwPjjmZTiIN1tNg4antnGcSPv1aYapJCY,7830
+tomwer/tasks/reconstruction/cleardarkflat.py,sha256=_V_x7W8vp1_AqqtQ9xk2VRgwlivn4IPTLEpWySjSZRE,1353
 tomwer/tests/__init__.py,sha256=dPPaIvpzHssjwxsMzYJM_gxQ2e0cnRyQHXxi9ux6ZOY,19
 tomwer/tests/conftest.py,sha256=0XlKfOrVtPg8VmyQn4BoK_mzcliFUtacDGLlZ5wD_PM,1912
 tomwer/tests/datasets.py,sha256=QXQ3jSwgWzfq4CaELOSrk9kHg5GmrP7kGHsdOlNSEIE,336
@@ -903,9 +905,9 @@ tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewer
 tomwer/tests/test_ewoks/test_conversion.py,sha256=a8cEWbErXiFCAkaapi0jeEoRKYxcFQCoa-Jr_u77_OM,3656
 tomwer/tests/test_ewoks/test_single_node_execution.py,sha256=YBUHfiAnkciv_kjj7biC5fOs7c7ofNImM_azGMn4LZM,2813
 tomwer/tests/test_ewoks/test_workflows.py,sha256=Eq80eexf5NVL7SzvwctLOaUeuQ8V3vDiFiHgbJA4Yb8,4871
-tomwer-1.4.7.dist-info/LICENSE,sha256=62p1wL0n9WMTu8x2YDv0odYgTqeSvTd9mQ0v6Mq7lzE,1876
-tomwer-1.4.7.dist-info/METADATA,sha256=cTWcuTnfLh2DnmMNzen6jZRoBgRDp3VRqOv9U08BI80,13415
-tomwer-1.4.7.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-tomwer-1.4.7.dist-info/entry_points.txt,sha256=py3ZUWvGnWGc5c7Yhw_uBTm8Fmew0BDw3aQZnWMBNZI,500
-tomwer-1.4.7.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
-tomwer-1.4.7.dist-info/RECORD,,
+tomwer-1.4.9.dist-info/LICENSE,sha256=62p1wL0n9WMTu8x2YDv0odYgTqeSvTd9mQ0v6Mq7lzE,1876
+tomwer-1.4.9.dist-info/METADATA,sha256=NPzI78ud1GOKO6eFvOqUWdAr3uUtZ7h0VdJdWAVFy3c,13415
+tomwer-1.4.9.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+tomwer-1.4.9.dist-info/entry_points.txt,sha256=py3ZUWvGnWGc5c7Yhw_uBTm8Fmew0BDw3aQZnWMBNZI,500
+tomwer-1.4.9.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
+tomwer-1.4.9.dist-info/RECORD,,