tomwer 1.4.4__py3-none-any.whl → 1.4.6__py3-none-any.whl

orangecontrib/tomwer/__init__.py

@@ -1,3 +1,7 @@
+"""
+Orange add-on for tomography
+"""
+
 import logging
 
 from . import state_summary  # noqa F401

orangecontrib/tomwer/widgets/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets dedicated for tomography
+"""
 
 from ewoksorange.pkg_meta import get_distribution
 

orangecontrib/tomwer/widgets/cluster/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016-2021 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for remote processing through slurm
+"""
 
 NAME = "compute cluster"
 

orangecontrib/tomwer/widgets/control/__init__.py

@@ -1,26 +1,7 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets to 'control' the flow. Like defining input / output, stacking scans...
+Those widget are not doing any 'core' processing.
+"""
 
 NAME = "control"
 

orangecontrib/tomwer/widgets/dataportal/__init__.py

@@ -1,3 +1,8 @@
+"""
+(Ewoks)Orange Widgets to 'control' the flow. Like defining input / output, stacking scans...
+Those widget are not doing any 'core' processing.
+"""
+
 NAME = "data portal"
 
 ID = "orangecontrib.tomwer.widgets.dataportal"

orangecontrib/tomwer/widgets/debugtools/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for debugging. To be used at your own risk and peril
+"""
 
 NAME = "debug tools"
 

orangecontrib/tomwer/widgets/edit/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for NXtomo edition
+"""
 
 NAME = "edit HDF5 - NXTomo"
 

orangecontrib/tomwer/widgets/other/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for tomography not matching any other category
+"""
 
 NAME = "other"
 

orangecontrib/tomwer/widgets/reconstruction/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for tomography core processing
+"""
 
 NAME = "reconstruction"
 

orangecontrib/tomwer/widgets/stitching/__init__.py

@@ -1,3 +1,7 @@
+"""
+(Ewoks)Orange Widgets for pre or post processing stitching
+"""
+
 NAME = "stitching"
 
 ID = "orangecontrib.tomwer.widgets.stitching"

orangecontrib/tomwer/widgets/visualization/__init__.py

@@ -1,26 +1,6 @@
-# coding: utf-8
-###########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################
+"""
+(Ewoks)Orange Widgets for tomography raw and processed data visualization
+"""
 
 NAME = "visualization"
 

tomwer/__init__.py

@@ -1,6 +1,7 @@
 # coding: utf-8
 """
-tomwer tests
+Applications and library for tomography processing.
+Provides ewoks tasks, several GUI for nabu as several utils.
 """
 
 from __future__ import absolute_import, division, print_function

tomwer/core/process/reconstruction/nabu/nabucommon.py

@@ -15,6 +15,8 @@ import sys
 import numpy
 from silx.io.url import DataUrl
 from silx.io.utils import open as open_hdf5
+from silx.gui.utils import concurrent
+
 from sluurp.executor import submit as submit_to_slurm_cluster
 from sluurp.job import SBatchScriptJob
 from tomoscan.io import HDF5File
@@ -41,6 +43,8 @@ from tomwer.core.scan.nxtomoscan import NXtomoScan
 from tomwer.core.scan.scanbase import TomwerScanBase
 from tomwer.core.utils.slurm import get_slurm_script_name, is_slurm_available
 from tomwer.core.volume.volumefactory import VolumeFactory
+from tomwer.core.resourcemanager import HDF5VolumeManager
+from tomwer.core.volume.hdf5volume import HDF5VolumeIdentifier
 
 from . import settings, utils
 
@@ -279,25 +283,43 @@ class _NabuBaseReconstructor:
                 success=True,
                 config=config_to_dump,
             )
-        elif self.target is Target.LOCAL:
-            _logger.info(f"run {info} for {self.scan} with {config_to_dump}")
-            return self._run_nabu_locally(
-                conf_file=config_file,
-                file_format=file_format,
-                config_to_dump=config_to_dump,
-                axis=config_to_dump["reconstruction"].get("slice_plane", "XY"),
-            )
-        elif self.target is Target.SLURM:
-            _logger.info(
-                f"run {info} on slurm for {self.scan.path} with {config_to_dump}"
-            )
-            return self._run_nabu_on_slurm(
-                conf_file=config_file,
-                config_to_dump=config_to_dump,
-                cluster_config=self.cluster_config.to_dict(),
-                process_name=process_name,
-                info=info,
-            )
+        elif self.target in (Target.LOCAL, Target.SLURM):
+            axis = config_to_dump["reconstruction"].get("slice_plane", "XY")
+            if file_format in ("hdf5", "h5", "hdf"):
+                vol_identifiers = utils.get_recons_volume_identifier(
+                    file_prefix=config_to_dump["output"]["file_prefix"],
+                    location=config_to_dump["output"]["location"],
+                    slice_index=None,
+                    scan=self.scan,
+                    file_format=file_format,
+                    axis=axis,
+                )
+                # release potential resource lockers (like the HDF5 volume viewer)
+                for vol_identifier in vol_identifiers:
+                    if isinstance(vol_identifier, HDF5VolumeIdentifier):
+                        concurrent.submitToQtMainThread(
+                            HDF5VolumeManager.release_resource,
+                            vol_identifier.file_path,
+                        )
+            if self.target is Target.LOCAL:
+                _logger.info(f"run {info} for {self.scan} with {config_to_dump}")
+                return self._run_nabu_locally(
+                    conf_file=config_file,
+                    file_format=file_format,
+                    config_to_dump=config_to_dump,
+                    axis=axis,
+                )
+            elif self.target is Target.SLURM:
+                _logger.info(
+                    f"run {info} on slurm for {self.scan.path} with {config_to_dump}"
+                )
+                return self._run_nabu_on_slurm(
+                    conf_file=config_file,
+                    config_to_dump=config_to_dump,
+                    cluster_config=self.cluster_config.to_dict(),
+                    process_name=process_name,
+                    info=info,
+                )
         else:
             raise ValueError(f"{self.target} is not recognized as a valid target")
 
@@ -362,7 +384,7 @@ class _NabuBaseReconstructor:
             self._process.kill()
             outs, errs = self._process.communicate()
 
-        recons_urls = utils.get_recons_volume_identifier(
+        recons_vol_identifiers = utils.get_recons_volume_identifier(
             file_prefix=config_to_dump["output"]["file_prefix"],
             location=config_to_dump["output"]["location"],
             slice_index=None,
@@ -372,7 +394,7 @@ class _NabuBaseReconstructor:
         )
         return ResultsLocalRun(
             success=not nabu_std_err_has_error(errs),
-            results_identifiers=recons_urls,
+            results_identifiers=recons_vol_identifiers,
             std_out=outs,
             std_err=errs,
             config=config_to_dump,  # config_slices,
@@ -392,10 +414,12 @@ class _NabuBaseReconstructor:
         :return: results of the slurm run
         """
         if not isinstance(conf_file, str):
-            raise TypeError(f"conf_file is expected to be a strg not {type(conf_file)}")
+            raise TypeError(
+                f"conf_file is expected to be a string not {type(conf_file)}"
+            )
         if not isinstance(config_to_dump, dict):
             raise TypeError(
-                f"config_to_dump is expected to be a strg not {type(config_to_dump)}"
+                f"config_to_dump is expected to be a string not {type(config_to_dump)}"
             )
         if not is_slurm_available():
             raise RuntimeError("slurm not available")
@@ -428,7 +452,7 @@ class _NabuBaseReconstructor:
         job = SBatchScriptJob(
             slurm_config=cluster_config,
             script=(
-                f"python3 -m {settings.NABU_FULL_FIELD_APP_PATH} {conf_file} --gpu_mem_fraction {gpu_mem_fraction} --cpu_mem_fraction {cpu_mem_fraction}",
+                f"python3 -m {settings.NABU_FULL_FIELD_APP_PATH} '{conf_file}' --gpu_mem_fraction {gpu_mem_fraction} --cpu_mem_fraction {cpu_mem_fraction}",
             ),
             script_path=os.path.join(self.scan.path, "slurm_scripts", script_name),
             clean_script=False,

tomwer/core/process/reconstruction/nabu/utils.py

@@ -12,6 +12,7 @@ from nabu.pipeline.fullfield.nabu_config import (
 )
 from silx.utils.enum import Enum as _Enum
 
+from tomoscan.identifier import VolumeIdentifier
 import tomwer.version
 from tomwer.core.process.reconstruction.nabu.plane import NabuPlane
 from tomwer.core.scan.edfscan import EDFTomoScan
@@ -100,7 +101,7 @@ def get_recons_volume_identifier(
     scan: TomwerScanBase,
     slice_index: int | None,
     axis: NabuPlane,
-) -> tuple:
+) -> tuple[VolumeIdentifier]:
     """
     return tuple of DataUrl for existings slices
     """
@@ -160,19 +161,6 @@ def get_recons_volume_identifier(
             ),
         )
 
-    # case of the multitiff. Not handled by tomwer
-    # elif file_format == "tiff":
-    #     # for single frame tiff nabu uses another convention by saving it 'directly'.
-    #     volumes = (
-    #         MultiTIFFVolume(
-    #             file_path=os.path.join(
-    #                 location,
-    #                 file_prefix,
-    #                 ".".join([file_prefix, file_format]),
-    #             ),
-    #         ),
-    #     )
-
     else:
         raise ValueError(f"file format not managed: {file_format}")
 

tomwer/core/resourcemanager.py

@@ -0,0 +1,33 @@
+class BaseResourceObserver:
+    """base class of the resource observer"""
+
+    def release_resource(self, resource):
+        raise NotImplementedError("Base class")
+
+
+class _DummyResourceManager:
+    """
+    Simple resource manager. It holds a set of observer tha must release a resource when requested
+    Observers must implement the 'BaseResourceObserver'
+    """
+
+    def __init__(self):
+        self._observers = set()
+
+    def register(self, observer):
+        """Register a process to be notified when the resource should be released."""
+        if observer not in self._observers:
+            self._observers.add(observer)
+
+    def unregister(self, observer):
+        """Unregister a process so it won't be notified anymore."""
+        if observer in self._observers:
+            self._observers.remove(observer)
+
+    def release_resource(self, resource: str):
+        """Force all observer to release the given resource"""
+        for observer in self._observers:
+            observer.release_resource(resource)
+
+
+HDF5VolumeManager = _DummyResourceManager()

tomwer/core/utils/image.py

@@ -116,8 +116,8 @@ def scale_img2_to_img1(
         else:
             raise ValueError("method not managed", method)
 
-        vec0 = numpy.mat([[min0], [me0], [max0]])
-        matr = numpy.mat(
+        vec0 = numpy.asmatrix([[min0], [me0], [max0]])
+        matr = numpy.asmatrix(
             [[min1 * min1, min1, 1.0], [me1 * me1, me1, 1.0], [max1 * max1, max1, 1.0]]
         )
         vec1 = inv(matr) * vec0

tomwer/gui/reconstruction/axis/ControlWidget.py

@@ -211,7 +211,7 @@ class _PositionInfoWidget(qt.QWidget):
         else:
             value = float(self._relativePositionQLE.text())
             # make sure we only emit the signal if the value changed (and when the Qline has been edited).
-            if self._axis_params.relative_cor_value is None or (
+            if isinstance(self._axis_params.relative_cor_value, (type(None), str)) or (
                 self._axis_params is not None
                 and not numpy.isclose(
                     value, self._axis_params.relative_cor_value, atol=1e-3

tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py

@@ -10,6 +10,7 @@ from silx.gui.dialog.DataFileDialog import DataFileDialog
 from silx.utils.enum import Enum as _Enum
 
 from nxtomomill.io.utils import convert_str_to_tuple
+from tomwer.core.utils.char import DEGREE_CHAR
 from tomwer.core.process.reconstruction.nabu.plane import NabuPlane
 from tomwer.core.process.reconstruction.nabu.nabuslices import NabuSliceMode
 from tomwer.core.process.reconstruction.nabu.utils import (
@@ -449,11 +450,11 @@ class _NabuReconstructionConfig(qt.QWidget, _NabuStageConfigBase):
         self.registerWidget(self._anglesFileWidget, "advanced")
 
         # exclude projections: [A, B] (if user want's to skip projection from degree A to degree B (included))
-        self._excludeProjectionsQCB = qt.QCheckBox("exclude projections angles", self)
+        self._excludeProjectionsQCB = qt.QCheckBox("exclude proj angles", self)
         self.layout().addWidget(self._excludeProjectionsQCB, 24, 0, 1, 1)
         self._excludeProjectionsWidget = RangeWidget(self)
         self._excludeProjectionsWidget.setRange(0.0, 360.0)
-        self._excludeProjectionsWidget.setSuffix("º")
+        self._excludeProjectionsWidget.setSuffix(DEGREE_CHAR)
         self._excludeProjectionsWidget.setToolTip(
             "Projections with a rotation in [a, b] range will be ignored."
         )

tomwer/gui/reconstruction/nabu/slices.py

@@ -520,10 +520,10 @@ class NabuWidget(qt.QWidget):
         # signal / slot connections
         self._flow.sigConfigurationChanged.connect(self._processSelectionChanged)
         self._flow.sigResetConfiguration.connect(self._processSelectionChanged)
-        self._configuration.sigConfChanged.connect(self._triggerConfigchanged)
-        self._nabuModeCB.currentIndexChanged.connect(self._triggerConfigchanged)
+        self._configuration.sigConfChanged.connect(self._triggerConfigChanged)
+        self._nabuModeCB.currentIndexChanged.connect(self._triggerConfigChanged)
 
-    def _triggerConfigchanged(self, *args, **kwargs):
+    def _triggerConfigChanged(self, *args, **kwargs):
         self.sigConfigChanged.emit()
 
     def isModeLocked(self) -> True:

tomwer/gui/visualization/volumeviewer.py

@@ -6,6 +6,8 @@ import h5py
 
 import numpy
 import numpy.lib.npyio
+
+import os
 import silx
 from silx.gui import qt
 from silx.gui.colors import Colormap
@@ -18,6 +20,7 @@ from tomwer.core.volume.volumefactory import VolumeFactory
 from tomwer.core.scan.scanbase import TomwerScanBase
 from tomwer.gui.visualization.reconstructionparameters import ReconstructionParameters
 from tomwer.core.volume.hdf5volume import HDF5Volume
+from tomwer.core.resourcemanager import BaseResourceObserver, HDF5VolumeManager
 from tomoscan.identifier import VolumeIdentifier
 
 from silx.gui.widgets.WaitingOverlay import WaitingOverlay
@@ -215,9 +218,9 @@ class _TomoApplicationContext(DataViewHooks):
         return self.__defaultColormapDialog
 
 
-class VolumeViewer(qt.QMainWindow):
+class VolumeViewer(qt.QMainWindow, BaseResourceObserver):
     def __init__(self, parent):
-        qt.QMainWindow.__init__(self, parent)
+        super().__init__(parent)
 
         self._volume_loaded_in_background = (None, None)
         # store the volume loaded in the background and the thread used for it as (volume_identifier, thread)
@@ -259,6 +262,8 @@ class VolumeViewer(qt.QMainWindow):
         loading data on the fly and avoid loading everything into memory for
         hdf5."""
         self.__last_mode = None
+        # register the viewer as observer of the HDF5 volume (handle resource conflict)
+        HDF5VolumeManager.register(self)
 
     def _close_h5_file(self):
         if self._h5_file is not None:
@@ -266,9 +271,21 @@ class VolumeViewer(qt.QMainWindow):
         self._h5_file = None
 
     def close(self):
+        HDF5VolumeManager.unregister(self)
         self._close_h5_file()
         super().close()
 
+    def release_resource(self, resource: str):
+        if self._h5_file is not None and resource in (
+            self._h5_file.filename,
+            os.path.abspath(self._h5_file.filename),
+        ):
+            _logger.warning(
+                f"{resource} about to be overwrite. Closing resource and cleaning plot."
+            )
+            self._close_h5_file()
+            self.clear()
+
     def setScan(self, scan):
         self.clear()
         if scan is None:
@@ -276,7 +293,6 @@ class VolumeViewer(qt.QMainWindow):
 
         elif len(scan.latest_vol_reconstructions) == 0:
             _logger.warning(f"No reconstructed volume for {scan}")
-            self.clear()
             self._infoWidget.setScan(scan)
         else:
             self._set_volumes(volumes=scan.latest_vol_reconstructions)

tomwer/tasks/reconstruction/cleardarkflat.py

@@ -0,0 +1,38 @@
+"""
+Contains task to clear reduced dark and flat frames
+"""
+from __future__ import annotations
+
+from tomoscan.scanbase import TomoScanBase as TomoscanScanBase
+
+from processview.core.manager import DatasetState, ProcessManager
+from processview.core.superviseprocess import SuperviseProcess
+
+from tomwer.tasks.task import Task
+from tomwer.core.scan.scanbase import TomwerScanBase
+from tomwer.core.scan.scanfactory import ScanFactory
+from tomwer.core.utils.scanutils import data_identifier_to_scan
+from tomwer.core.reconstruction.darkflat import params as dkrf_reconsparams
+from tomwer.utils import docstring
+
+
+class ClearReducedDarkAndFlat(
+    Task,
+    SuperviseProcess,
+    input_names=("data",),
+    output_names=("data",),
+):
+    """
+    Task to clear reduced darks and flats. Both on disk and on the object cache.
+    th goal of this task is to make sure the scan is cleared of any reduced frames to reprocess it later.
+    """
+    def run(self):
+        scan = self.inputs.data
+        if not isinstance(scan, TomoscanScanBase):
+            raise TypeError(f"scan should be an instance of {TomoscanScanBase}. Got {type(scan)}")
+        scan.set_reduced_flats(None)
+        scan.reduced_flats_infos = None
+        scan.set_reduced_darks(None)
+        scan.reduced_darks_infos = None
+        
+        self.outputs.data = scan

tomwer/version.py

@@ -77,7 +77,7 @@ RELEASE_LEVEL_VALUE = {
 
 MAJOR = 1
 MINOR = 4
-MICRO = 4
+MICRO = 6
 RELEV = "final"  # <16
 SERIAL = 0  # <16
 

{tomwer-1.4.4.dist-info → tomwer-1.4.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: tomwer
-Version: 1.4.4
+Version: 1.4.6
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: Henri Payno, Pierre Paleo, Pierre-Olivier Autran, Jérôme Lesaint, Alessandro Mirone

{tomwer-1.4.4.dist-info → tomwer-1.4.6.dist-info}/RECORD

@@ -1,4 +1,4 @@
-orangecontrib/tomwer/__init__.py,sha256=B4DXy1gY_wXmNYa2aOfapmJb2mEuCAjoaNEGnpBs70g,148
+orangecontrib/tomwer/__init__.py,sha256=E5i2PjCEuhPROPQU9zg7CMXhxpcgtBuYlIwk1KFLCrM,186
 orangecontrib/tomwer/state_summary.py,sha256=5_dPzweL3r0ye4ZfJo6IV2ThJI8fQhWoO2ySdJJajj8,1711
 orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/orange/managedprocess.py,sha256=0OMlOYnNq5hC-t6CWtDaERQ9k0bNMGaLzVT9fDyM1LE,3512
@@ -25,11 +25,11 @@ orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows,sha256=eSxYxrZ-0WKsmD
 orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows,sha256=lmn7C0LQIzJpxVJjHajyPKfJZZSHSNBG2x8uxnv6Zg8,29566
 orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows,sha256=kFGXGxc3eW7iG5TcAxaOwEwh1cvsKZEO3T_cA3mrd1k,22602
 orangecontrib/tomwer/tutorials/id16b/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-orangecontrib/tomwer/widgets/__init__.py,sha256=opiulo6YDS3ppJAH_gqajJoKBPX4CqLXMPZiaJdXhBI,2449
+orangecontrib/tomwer/widgets/__init__.py,sha256=dX_TpkBh3mVsrj3EeGglEESsnZAEVq7V0Nb9bnBrb-8,1214
 orangecontrib/tomwer/widgets/utils.py,sha256=yq1wZfpfY3iVAhwMRBls57q02lhljO89WRKN7MxMMNg,983
 orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py,sha256=uvtstSQ3rRB_T0f734zPEZEelUQRe9btkjP7PJfj8zk,8176
 orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py,sha256=L_fX3EFyyx71Fg-FI8ab34ZPSUzrwKGJLcS2FnYCY_c,2565
-orangecontrib/tomwer/widgets/cluster/__init__.py,sha256=HyTijuJFHFyl5n94nCWREgTxbE3olYsYLAFshjTMNN4,1614
+orangecontrib/tomwer/widgets/cluster/__init__.py,sha256=vOOJnIIaLWAj8tnxD9MRzWDyYgk-cyuBsN7QQ5FrIoQ,385
 orangecontrib/tomwer/widgets/cluster/icons/slurm.png,sha256=C-YBLwXCnh0oo4nvEt80WxX_jKYGUAFpWMUSlzt6ke0,1995
 orangecontrib/tomwer/widgets/cluster/icons/slurm.svg,sha256=9LqiU88NH3ACxtZ8A7gTm-C_0ACR8iq0k_N2W1IFf9Q,9790
 orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.png,sha256=sxH1V20s0JZPTCq82Fizz8Q9RHXwviapdStgZT8GBIM,3212
@@ -54,7 +54,7 @@ orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py,sha256=suxOdSAzqKKY3jTCe
 orangecontrib/tomwer/widgets/control/TimerOW.py,sha256=nN5IXfNRmiZkcxVUYtmaifFqEBZlsPxuChPaEW6GvCo,3442
 orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py,sha256=Db15EPVFPXxkIoEye2NbpyD_hAWmg1OkZVaeON7shVM,1905
 orangecontrib/tomwer/widgets/control/VolumeSelector.py,sha256=2wDvqpmlHmmG2svlJd0oSTbXYbFv3xBKU63gp3LjoCg,4013
-orangecontrib/tomwer/widgets/control/__init__.py,sha256=SaP5K3r1k3BqnHyNEKKApBnfDXucbryi4HexMvokYhQ,1545
+orangecontrib/tomwer/widgets/control/__init__.py,sha256=F_-1j8jKiR-F4EU63uH4GwdOSypOVprH5VmLDvXxc6o,406
 orangecontrib/tomwer/widgets/control/icons/advancement.png,sha256=Uv_Eb1nzkb6IVj0u4btrz5_DD126aYPZcls7U40jIEw,729
 orangecontrib/tomwer/widgets/control/icons/advancement.svg,sha256=tNLbRofd2oT1bHov49X3q-YVNwtHEgrW3HfPc5i80js,5781
 orangecontrib/tomwer/widgets/control/icons/concatenate_nxtomos.png,sha256=TzB-Npgual5npoBsUXt4QWfCCJA8nD8hLf3C-BjMRXs,768
@@ -97,12 +97,12 @@ orangecontrib/tomwer/widgets/control/icons/volumesymlink.png,sha256=Gf9qmYvxpnGM
 orangecontrib/tomwer/widgets/control/icons/volumesymlink.svg,sha256=jVIt49I_7VeN9OQF1GeSujP_KwegQD4YFmIqOA-Jv9c,5786
 orangecontrib/tomwer/widgets/control/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py,sha256=Sj2rRS_RKnDXLTbtxBprB51uV3_G4rbD-Sy5h75iQ_U,5724
-orangecontrib/tomwer/widgets/dataportal/__init__.py,sha256=OrDOA9NXVUgLubiOXCJhWrhEohMk6u3ZWchQ6d0d1_k,292
+orangecontrib/tomwer/widgets/dataportal/__init__.py,sha256=TXA_tTnf6PadfdG3gBi5hD6RvfcrIH2FWRHM2splEMQ,444
 orangecontrib/tomwer/widgets/dataportal/icons/publish_processed_data.png,sha256=ZfThE_Or-fxNtnZnztNmLZ9XAS5sLTkOTpviE4xJN_s,2866
 orangecontrib/tomwer/widgets/dataportal/icons/publish_processed_data.svg,sha256=RWwPD-d9NRdV5vRjE_STgC1v4hH0nEo7aeBtfKFhUH4,22489
 orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py,sha256=gqtZw3UXtsdQQXz4uesIhwM3QdvGyTnxV35luybZ2As,5045
 orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py,sha256=KEu0I4Y7EyZ6iKIBji-0nrg1qUXDGiJCcdTASymUc54,1106
-orangecontrib/tomwer/widgets/debugtools/__init__.py,sha256=yYF1v2MWP4g1uXZOw3qPPvDnX8KKzauVTRit6fJ9MWM,1553
+orangecontrib/tomwer/widgets/debugtools/__init__.py,sha256=xtFgCF5BKyhxSOP7Xsg2aYtKD80qUnOX7iTSt34sYfo,346
 orangecontrib/tomwer/widgets/debugtools/icons/hammer.png,sha256=5z_sXTWfAMCYhKbvLdiOmil8BpSxUICI_Y1BW9NL0Co,2034
 orangecontrib/tomwer/widgets/debugtools/icons/hammer.svg,sha256=7uovCO-33EP_A6sjGzQMkvF59hdF_Aj1hzr5yIAfDjk,3191
 orangecontrib/tomwer/widgets/debugtools/icons/inspector.png,sha256=sNTPrEEDGQHwU-O6hXBZfdmXeUWUarZPsL3s6l9opSE,1020
@@ -112,7 +112,7 @@ orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py,sha256=fJuVlzd5mBRWOwKxRltl
 orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py,sha256=qTI6B3cA-THpW3I7GJsP808vMCGX2XoQ-LzUqBeyvtY,3506
 orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py,sha256=X9IXgm65Nq1TeDnYYIuyo8KlYfda2LQ38MtX_9rLQj8,3672
 orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py,sha256=PPSP8kqnkmHeeY4RW9IjH9n848W5MkCEQp4Emw8D17U,3744
-orangecontrib/tomwer/widgets/edit/__init__.py,sha256=Vi59fYTOMhrLXwQ3OkMIonmHx4rG_UUnutZPiax_rGY,1555
+orangecontrib/tomwer/widgets/edit/__init__.py,sha256=PpGNkRtMR-DnYWKixSHpvNqO8K2I9jpgeJ4NR_Gg5i0,314
 orangecontrib/tomwer/widgets/edit/icons/image_key_editor.png,sha256=Fl6PEgzY9Gjs6Sh_vMWHCXVtNJ_wiQ5e9g58rZI64ng,878
 orangecontrib/tomwer/widgets/edit/icons/image_key_editor.svg,sha256=9viXpjZxrXDx6qgWbRByvvqbBLcleUS1viFpSVDdFgg,7396
 orangecontrib/tomwer/widgets/edit/icons/image_key_upgrader.png,sha256=jHnMOdF8A2H5KTZ0oG64OlKWA9MDhLW8L-mYS3HH4UA,998
@@ -143,7 +143,7 @@ orangecontrib/tomwer/widgets/icons/tomwer_visu.png,sha256=RuUI1bQwURe8iGkKhN3QzP
 orangecontrib/tomwer/widgets/icons/tomwer_visu.svg,sha256=KGi42uPMqTtLtj5pYc6slvCPN53MOOI8b0iRQx2sSBM,18818
 orangecontrib/tomwer/widgets/other/PythonScriptOW.py,sha256=49xYuqFsNZicGLX4hLHzQXsEwLr8v2CvrI43I4BL3o0,28273
 orangecontrib/tomwer/widgets/other/TomoObjsHub.py,sha256=WMbqQO2LB7tFtzaeQirPt8ylKVvE4zxMvClsyImOGN8,886
-orangecontrib/tomwer/widgets/other/__init__.py,sha256=7Ca9kD-HBAYOI72go7FckSGSeBSMmZn17Wt2ZNVbK5o,1512
+orangecontrib/tomwer/widgets/other/__init__.py,sha256=Y4LoexhNGqw5oKNHJ6yxQliPNPeQSAY6C9MQBULNg50,299
 orangecontrib/tomwer/widgets/other/icons/PythonScript.svg,sha256=-8O2mNwRmyVdFvpcJsXLlOPcn50Sbv_qFHet1IF9T6A,5501
 orangecontrib/tomwer/widgets/other/icons/hub.png,sha256=wnKSaxw2WnBkSQjI86aLZfdmKvV31Vputq1zukQIrXk,1122
 orangecontrib/tomwer/widgets/other/icons/hub.svg,sha256=9EYoBKY-P-cO17nM48OPA9VDZSCbyGtrMRc80BGHflk,3735
@@ -157,7 +157,7 @@ orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py,sha256=j-jDhgv6jvNOB
 orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py,sha256=6v57MWWDejzf5tcU3RqwQOIIsYyZn4lzP_JUq5WcElQ,17488
 orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py,sha256=3-JUMNswoAVcycHLZBfZJGWyVDNKx6ZSz3ZgxxV1q2I,14005
 orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py,sha256=HVia_JxLIpk6oP-6fza4wYhXsG3i2dLvA5XxrWfQpac,8843
-orangecontrib/tomwer/widgets/reconstruction/__init__.py,sha256=lgfP-eyIPCwy2R5FVl7uBcO17ESpLbkB1YSvieFRqq4,1601
+orangecontrib/tomwer/widgets/reconstruction/__init__.py,sha256=uMWYU54-b_YyVIpUrXus-BZd-3-7BHToTB-yFu5zbC0,372
 orangecontrib/tomwer/widgets/reconstruction/icons/axis.png,sha256=aR8oqTY-fJVnlitEuiJmFIYSeRfZmbrEBO2InrwHHOk,1286
 orangecontrib/tomwer/widgets/reconstruction/icons/axis.svg,sha256=JpLrZlH3IiAC7Ea53PwFIWZCPTY-BnlduJ_FEnY6sG8,5426
 orangecontrib/tomwer/widgets/reconstruction/icons/bricks.png,sha256=nAVSPm14Ym1-nyGjSjw70x74WXto0AtzzoCBB0m80_Y,8121
@@ -187,7 +187,7 @@ orangecontrib/tomwer/widgets/reconstruction/icons/tomwer.png,sha256=M9IWm_TDKlSA
 orangecontrib/tomwer/widgets/reconstruction/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/stitching/StitcherOW.py,sha256=j4UQPKYlGVcp2b5C9qntenKUltc9z-nMopjdE1SZMpw,2351
 orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py,sha256=IMYeOLCxPEF6XVGljWochfKvPsyaYW0jRF8foP51BpU,3271
-orangecontrib/tomwer/widgets/stitching/__init__.py,sha256=TaJoeu_wSmquWmI50AzI0Vo5b3SbhxupWHtltIA_8t0,262
+orangecontrib/tomwer/widgets/stitching/__init__.py,sha256=3M-zKPHcJMwqiaY3gck-D6I0M4CuHOuV0eRyiXYgVl8,330
 orangecontrib/tomwer/widgets/stitching/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 orangecontrib/tomwer/widgets/visualization/DataViewerOW.py,sha256=pONhuu2Uu0FX2cbgWl3R_HT6OLh-vXRrKFKYrMPOsD8,4059
@@ -198,7 +198,7 @@ orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py,sha256=5uoA6SST3S-oU
 orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py,sha256=hwBO0OXArhHSRPGAXK4E8FxWB90Ox_2xMYuEeNahdMs,1876
 orangecontrib/tomwer/widgets/visualization/SliceStackOW.py,sha256=4z0GBlIMQB5mBwOoToWKTSt014EWmuV7-QvBI6KW0oc,2756
 orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py,sha256=63lyoHyxRtdk7_jeLRVgj9ZDzRtac4-o9ZuqrmEHJ00,1865
-orangecontrib/tomwer/widgets/visualization/__init__.py,sha256=fs52099kHZdY65qClB8xci6YOpTjsWzan6SET4147_M,1604
+orangecontrib/tomwer/widgets/visualization/__init__.py,sha256=tMH57IHTUAp0kCNtubCZsmhy7fL_SvAx003jRY72O5k,396
 orangecontrib/tomwer/widgets/visualization/icons/diff.png,sha256=2U0kPm-BhgDJsUAmBLCBSkJOkG2s3uSE5egegbwxrOU,378
 orangecontrib/tomwer/widgets/visualization/icons/diff.svg,sha256=ylAT_OgqRhiC81w06XCaE2lVUOYOW8XtuU3Hb_IV5UI,7693
 orangecontrib/tomwer/widgets/visualization/icons/esrf.png,sha256=keM4tfcuTQ3k3IGxx3tOW5sHiyegJgmbvYklo6e2M5U,105862
@@ -217,10 +217,10 @@ orangecontrib/tomwer/widgets/visualization/icons/tomwer.png,sha256=M9IWm_TDKlSA6
 orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.png,sha256=8XwGE5maqQdjmU7_EWcqiuOG7xsf7ycNUJ_40UvpYeA,4372
 orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px6VBxkC6RxD0QrQVzcBusDlNVKwekh551EF0A,8454
 orangecontrib/tomwer/widgets/visualization/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/__init__.py,sha256=GeLSeY4__z-HQZu1y4ptZ5Y1OeXFvG8kuEwWXhkeaMA,360
+tomwer/__init__.py,sha256=cMIyH-uRxpa9WVnAuWjiBD7k9TK57WO21RzP_S-Mb8I,460
 tomwer/__main__.py,sha256=7tCADiS4u7k1PCxFhlRAcYSIOpxQTGUTx8sCEQ-hi1E,8707
 tomwer/utils.py,sha256=7h7dEgKAEUmQ43jkULvC1B9Adl55nkCty-SEKUKCl4U,7008
-tomwer/version.py,sha256=cQn0hp7H0RGoblTK9Od0_A4QCnVaVE5G-t2RThewbMg,4386
+tomwer/version.py,sha256=69GoZku3KcVoMi8E2-7j4OrMNv9ytmND71aPCf4NsY8,4386
 tomwer/app/__init__.py,sha256=RYMB2YhbQaoMXC8W-oOyfZ_Y1vmHD7L13YkKeAMuShM,85
 tomwer/app/axis.py,sha256=OhDgMj_gS-45PnjKBTyOCOkmZ1Iy-Tb6Dj66mzQg0sU,5827
 tomwer/app/canvas.py,sha256=sM368nniUwbQXLA-oNCg1iNwMMol_ZGTKbiw8WsC4yw,1539
@@ -256,6 +256,7 @@ tomwer/app/stitching/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hS
 tomwer/app/stitching/common.py,sha256=TCXNnAz2MSJrrogB5iWptktxq-g5ED2FUt_jMnDXpnQ,14723
 tomwer/core/__init__.py,sha256=ry3BZxaZzsbjymW1wqPcKROzJO9ePkiiqWp1JRVOrS8,72
 tomwer/core/futureobject.py,sha256=YQE6zROyDFu2PYBI7hxZKpn-K_FqZQ9xGSIyqMErK5U,5114
+tomwer/core/resourcemanager.py,sha256=VLNnVodMa-HOMZhN2qpUR_L6phJ8IHPUEPYMxuW6VHg,1067
 tomwer/core/settings.py,sha256=57qD44LU_3eB50rD7RHdg5nBweiHerzWbXHcBUna6gY,4089
 tomwer/core/signal.py,sha256=I5TUcyeBZzrEh1SFGs-ylJSL1aBs41ZFb3IJo3O_55c,6115
 tomwer/core/tomwer_object.py,sha256=rIaD1QlN3Q0cR5h9Sap1Whn4lawu5z9zZ1KspdhYbg0,2023
@@ -334,14 +335,14 @@ tomwer/core/process/reconstruction/darkref/settings.py,sha256=35jliuOIjMKTOJjgn4
 tomwer/core/process/reconstruction/nabu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/core/process/reconstruction/nabu/castvolume.py,sha256=4VEVnJxWfG8_Ku2uhUSQAgGfvP_08mXswmC3bHU7E4M,9317
 tomwer/core/process/reconstruction/nabu/helical.py,sha256=gauUkoPiShvnvMQrCQXv28g0yLe-GceML5kYMSXmNIg,1997
-tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=s1KxEzHQJ09JEWP3_EvKFe51k1boi_a8YRlbs3TppdE,23338
+tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=fMMplu59iuh5bh_06JIVtSWRPXpThL4NJD_JRl8NVNk,24555
 tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=e5tRG1QtmVAdXb8KHMTMtBXA3KQXqKKcqipY2HzMURg,25275
 tomwer/core/process/reconstruction/nabu/nabuslices.py,sha256=WAmNlfyRWL0zhEE8jMjMg7WyzPM4BcBA6bWpaH8O53A,32101
 tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=Fn0tkPDTDJQaMEJA4LzpPp0ZtG4MIu9YN82-jesxRKo,20052
 tomwer/core/process/reconstruction/nabu/plane.py,sha256=366gWprWw8Rlob8jsMn753CqgudruvvVauU0ihH2lU4,400
 tomwer/core/process/reconstruction/nabu/settings.py,sha256=3AJpxVQbJziw4v6F26Ppz8Q9vc9ZNepTWygqpCAbIEM,955
 tomwer/core/process/reconstruction/nabu/target.py,sha256=59BbpzpBRVKEpZowcZVgdAj1GLKZGVJ52s3XA7ouLPs,122
-tomwer/core/process/reconstruction/nabu/utils.py,sha256=MvGMeAKrpSzScvRowe2ZbyQyNLj80vxm3jk-ldMMPEU,16519
+tomwer/core/process/reconstruction/nabu/utils.py,sha256=ymORZjJR7YkQ0VBujDyptF0xXzkj1dCwo29NjXvhA2E,16140
 tomwer/core/process/reconstruction/nabu/test/test_castvolume.py,sha256=v7USCU3z0zeW4TPs-slNJJei6t6B_UeqeJG5MV9qRII,3881
 tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py,sha256=8HpR_1iLkE32GYYaOyS84SR7_5nh1e48E3W4N34666g,15347
 tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py,sha256=5rHDwUROEBlsEFsZoy8mmcdRpziEetF9g_oFyxlvS6k,6010
@@ -426,7 +427,7 @@ tomwer/core/utils/deprecation.py,sha256=D3hS_ZzBQgjYG5UmZW5KaPPlHaH1OZVXePGCdIVt
 tomwer/core/utils/dictutils.py,sha256=9BEwERAYGL4tW06jTNGhgsJ2f4dojtYMmNixHoRF3XA,466
 tomwer/core/utils/ftseriesutils.py,sha256=HIiUzEPO9k3dRAYr0WB4LYqEifQ624r1HqMi3TaVHMA,1064
 tomwer/core/utils/gpu.py,sha256=4s0A3DViEKBvUtfKl0GzddZJyLCLeRJgKZpnIjihvyE,458
-tomwer/core/utils/image.py,sha256=YQntctscWmOcF6c5bnhS_mgMu2MHSkQmzgyAur8FsZk,3517
+tomwer/core/utils/image.py,sha256=vjUGRSFEn8WdlZ_2jpHHgVQjx4ac1Qa_0Cgspo-bR1c,3527
 tomwer/core/utils/lbsram.py,sha256=MOhgaDUBsIt2fU2KVPBy9lsJ7BGwXZCc0VDKK3tH2HI,988
 tomwer/core/utils/logconfig.py,sha256=p3ggqsukcsksEFhLztYjX8tRcUD3VMn9JVCvFpSUplM,85
 tomwer/core/utils/normalization.py,sha256=078TPG4wY9JhUOAqKZmN50w2j-7-cEs30UmiXNlYKOs,1548
@@ -545,7 +546,7 @@ tomwer/gui/reconstruction/axis/AxisSettingsWidget.py,sha256=7GpHteE2j9RUo-jUQoJd
 tomwer/gui/reconstruction/axis/AxisWidget.py,sha256=nkORZHLo8D3Sk8j-8QVr9l3Qse66s-Nv-tB6kCkSMTY,19794
 tomwer/gui/reconstruction/axis/CalculationWidget.py,sha256=E9zwJ2dNnc7KGH1QHRZE2eElIzj_r4GbPCIG_hn2yhw,8628
 tomwer/gui/reconstruction/axis/CompareImages.py,sha256=jqzlMBU_tfIdR1yHuZa8Avt8Te0EPBkjI6R4TY6kIlw,11425
-tomwer/gui/reconstruction/axis/ControlWidget.py,sha256=DsBPFIEZCva-JPUFxORjkAnoYfgb5udfJ71W-fCwgRY,10686
+tomwer/gui/reconstruction/axis/ControlWidget.py,sha256=w2kNLuIhQhGT3KpEYWWq4XJks3Kr7R2aOPCTKz4je4U,10709
 tomwer/gui/reconstruction/axis/EstimatedCORWidget.py,sha256=dL9SCjPEZ7MQLGZP0gZARb-rxD8YYSl-gcFyuN14jwg,17081
 tomwer/gui/reconstruction/axis/EstimatedCorComboBox.py,sha256=Hq8o6X5-iVMqltGcpy2E5OpCP5nNV353Mepsf_R7zVY,4434
 tomwer/gui/reconstruction/axis/InputWidget.py,sha256=UhEWL3aJG56PfkI7DKw-sBd6hDsRJ2NnQ0XN0nBmM6g,13052
@@ -560,7 +561,7 @@ tomwer/gui/reconstruction/nabu/check.py,sha256=5DYLlVCyXm3ax5VgogX79n1Oyl3O_JUvZ
 tomwer/gui/reconstruction/nabu/helical.py,sha256=TAVPcuZdgtZSz37ESqi_yuLhYuNnGde_0drvjTntahs,3708
 tomwer/gui/reconstruction/nabu/nabuflow.py,sha256=1qen0DnEDMAM1lqNaJJL_QT_h0VeRz_KxN7GDG9G0Iw,15508
 tomwer/gui/reconstruction/nabu/platform.py,sha256=eSPs2yUfBSHsqZ8bYY_BJ7zuRXc5sxXA4lRxlQaFBz0,3859
-tomwer/gui/reconstruction/nabu/slices.py,sha256=8xNubLOfjKvcl5rYSM2qlYW-1ULJGrtSl114JhSbGB4,24380
+tomwer/gui/reconstruction/nabu/slices.py,sha256=cGfdtvpTqJ0sujMIxjf0xyTgSl6YlRRAGcPGlTkVRaw,24380
 tomwer/gui/reconstruction/nabu/slurm.py,sha256=yfJD8KgX45Be5CUi6bn2CdocrQemJPxDYBBqoLoXqn0,1268
 tomwer/gui/reconstruction/nabu/volume.py,sha256=nqJvoj4dIMbLGNxXzxHngM5V0PBoyPOMvwbNGPAXSas,17837
 tomwer/gui/reconstruction/nabu/nabuconfig/__init__.py,sha256=WgEFXIrUDhX0vpBNlKiymHEY9p1DMdk4QZkvnXIC8yk,77
@@ -570,7 +571,7 @@ tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py,sha256=rJXFMr_dlTekd0mCb
 tomwer/gui/reconstruction/nabu/nabuconfig/output.py,sha256=0SShYqvFj-motxTw20e3I1Z0WiierSqgOsN15qwe-TY,11907
 tomwer/gui/reconstruction/nabu/nabuconfig/phase.py,sha256=h4F0qtKXOeligVuqKa-pBAvP2ol2EgfSRHjxvsQkvAQ,16293
 tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py,sha256=lmL2UTL7gt20nbDv921SFIAnVoJkumafSCjqTE4zGlY,32608
-tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py,sha256=bGCF7bJBfnh0xh4zcWpqhLrzqHuG32F-Tn4xHVQny3M,41151
+tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py,sha256=O1h59xVaDr0TDmP7hia_1nQQ01uNyos2oqVYLCpIkfk,41198
 tomwer/gui/reconstruction/nabu/test/test_cast_volume.py,sha256=kup5JVKNN4QZOXYGco1ZRb_4TWrXAQOtfuQcqTpraA0,2764
 tomwer/gui/reconstruction/nabu/test/test_check.py,sha256=KXg1Gg4FVjQ9GkBOgb0ZJh6_c3JMeJTtyX5UVY6vdms,2318
 tomwer/gui/reconstruction/nabu/test/test_ctf.py,sha256=uiJznrY6ScH51xaaSUFfplg9XJcFacczIV8_7k9tuRg,1554
@@ -668,7 +669,7 @@ tomwer/gui/visualization/scanoverview.py,sha256=boXasH759jc8p9v43nFqq6oxFGDMn8gg
 tomwer/gui/visualization/sinogramviewer.py,sha256=M91xw63ptfG1erPt6jvFH5uqmV6KUm1B4xreco6Ixto,8380
 tomwer/gui/visualization/tomoobjoverview.py,sha256=8tsVhTZw0upDSYzE1W8VXCWMBmSFcEP7SlcGA6Nl6ig,1995
 tomwer/gui/visualization/volumeoverview.py,sha256=k0OLdw5dvbDlWFnk6I8TlrJu03dmKToCZVEtmAh_U9M,2496
-tomwer/gui/visualization/volumeviewer.py,sha256=nT9GXMFZ86Hy6ppCJB_HnE8jFgIyvEmUnPPY1JZau1A,17007
+tomwer/gui/visualization/volumeviewer.py,sha256=CVfRj_azmrfoSztjX3l6nnQ9Yoyk9yhNbREoXRRq7eY,17648
 tomwer/gui/visualization/diffviewer/__init__.py,sha256=rZ7qOTfAChU3FouCdkZllXT9ZZqTdo1XhLZMfmOqUAE,39
 tomwer/gui/visualization/diffviewer/diffviewer.py,sha256=_MOApAnImO7cYg0-Oz8EKfJt0hWeDqusYLZ_gBrRRdk,20556
 tomwer/gui/visualization/diffviewer/shiftwidget.py,sha256=7gD_mo9P7HXklD416BScUnrQNDDqXkItgkzehqBam00,19608
@@ -847,6 +848,7 @@ tomwer/synctools/tests/test_darkRefs.py,sha256=1OgWaV-hgDmi4rkh0hxjCW_codBAnxNhp
 tomwer/synctools/tests/test_foldertransfer.py,sha256=ZFIJWSjgYAWw3ktzamid5DJZNnMkAV6Pj72dKG69cJc,12024
 tomwer/synctools/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/synctools/utils/scanstages.py,sha256=vIUKVDSfM2UwPjjmZTiIN1tNg4antnGcSPv1aYapJCY,7830
+tomwer/tasks/reconstruction/cleardarkflat.py,sha256=NW7xtaxF8-VRz0fFOUyotnyG5514YamwPtX6r2SZ-0s,1329
 tomwer/tests/__init__.py,sha256=dPPaIvpzHssjwxsMzYJM_gxQ2e0cnRyQHXxi9ux6ZOY,19
 tomwer/tests/conftest.py,sha256=0XlKfOrVtPg8VmyQn4BoK_mzcliFUtacDGLlZ5wD_PM,1912
 tomwer/tests/datasets.py,sha256=QXQ3jSwgWzfq4CaELOSrk9kHg5GmrP7kGHsdOlNSEIE,336
@@ -903,9 +905,9 @@ tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewer
 tomwer/tests/test_ewoks/test_conversion.py,sha256=a8cEWbErXiFCAkaapi0jeEoRKYxcFQCoa-Jr_u77_OM,3656
 tomwer/tests/test_ewoks/test_single_node_execution.py,sha256=YBUHfiAnkciv_kjj7biC5fOs7c7ofNImM_azGMn4LZM,2813
 tomwer/tests/test_ewoks/test_workflows.py,sha256=Eq80eexf5NVL7SzvwctLOaUeuQ8V3vDiFiHgbJA4Yb8,4871
-tomwer-1.4.4.dist-info/LICENSE,sha256=62p1wL0n9WMTu8x2YDv0odYgTqeSvTd9mQ0v6Mq7lzE,1876
-tomwer-1.4.4.dist-info/METADATA,sha256=rX-5hSdlbZ--HdznnGl7KCiDSBycJgqfzwxurDQeYFU,13377
-tomwer-1.4.4.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-tomwer-1.4.4.dist-info/entry_points.txt,sha256=py3ZUWvGnWGc5c7Yhw_uBTm8Fmew0BDw3aQZnWMBNZI,500
-tomwer-1.4.4.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
-tomwer-1.4.4.dist-info/RECORD,,
+tomwer-1.4.6.dist-info/LICENSE,sha256=62p1wL0n9WMTu8x2YDv0odYgTqeSvTd9mQ0v6Mq7lzE,1876
+tomwer-1.4.6.dist-info/METADATA,sha256=TQPiVdXJJAx3zhFXOq4jRbjX0WSafNX2ZmOyrDeTQWk,13377
+tomwer-1.4.6.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+tomwer-1.4.6.dist-info/entry_points.txt,sha256=py3ZUWvGnWGc5c7Yhw_uBTm8Fmew0BDw3aQZnWMBNZI,500
+tomwer-1.4.6.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
+tomwer-1.4.6.dist-info/RECORD,,

{tomwer-1.4.4.dist-info → tomwer-1.4.6.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.6.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any