tomwer 1.3.6__py3-none-any.whl → 1.3.8__py3-none-any.whl

tomwer/core/process/reconstruction/nabu/utils.py

@@ -461,6 +461,8 @@ def nabu_std_err_has_error(errs: typing.Optional[bytes]):
             in line
             or "return SourceModule(" in line
             or "CUBLAS" in line
+            or "Not supported for EDF"
+            in line  # debatable but very disturbing from the gui side... anyway EDF days are coming to an end
         )
 
     if errs is None:

tomwer/gui/control/datawatcher/datawatcher.py

@@ -148,7 +148,6 @@ class DataWatcherWidget(_DataWatcher, qt.QMainWindow):
 
         # set initial path to observe
         self.setFolderObserved(self._getInitPath())
-        self._initStatusView()
 
         # hide all windows by default
         for widget in (
@@ -475,20 +474,10 @@ class DataWatcherWidget(_DataWatcher, qt.QMainWindow):
             self.observationThread.sigScanReady.disconnect(self._signalScanReady)
             self.obsThIsConnected = False
 
-    def _initStatusView(self):
-        """
-        The status view need a thread to update the animated icon when scanning
-        """
-        self.__threadAnimation = QWaiterThread(0.1)
-        self.__threadAnimation.finished.connect(self._updateAnimatedIcon)
-
     def _updateStatusView(self):
         """Update the processing state"""
         if self.currentStatus in self._animatedStates:
-            if not self.__threadAnimation.isRunning():
-                self.__threadAnimation.start()
-            elif self.__threadAnimation is not None:
-                self.__threadAnimation.wait(4000)
+            pass
         elif self.currentStatus == "acquisition ended":
             self._setStateIcon(silxicons.getQIcon("selected"))
         elif self.currentStatus == "failure":
@@ -506,18 +495,6 @@ class DataWatcherWidget(_DataWatcher, qt.QMainWindow):
         else:
             self._stateLabel.setPixmap(icon.pixmap(30, state=qt.QIcon.On))
 
-    def _updateAnimatedIcon(self):
-        """Simple function which manage the waiting icon"""
-        if self.currentStatus in self._animatedStates:
-            icon = self.animated_icon.currentIcon()
-            if icon is None:
-                icon = qt.QIcon()
-            self.animated_icon._updateState()
-            self._setStateIcon(icon)
-
-            # get ready for the next animation
-            self.__threadAnimation.start()
-
     def _signalScanReady(self, scan):
         if type(scan) is str:
             try:

tomwer/synctools/stacks/reconstruction/castvolume.py

@@ -94,11 +94,26 @@ class CastVolumeProcessStack(FIFO, qt.QObject):
             self.scan_ready(scan=data)
         else:
             self._data_currently_computed = data
-            self._computationThread.init(data=data, configuration=configuration)
-            # need to manage connect before starting it because
-            fct_callback = functools.partial(self._end_threaded_computation, callback)
-            self._computationThread.finished.connect(fct_callback)
-            self._computationThread.start()
+            try:
+                self._computationThread.init(data=data, configuration=configuration)
+            except ValueError as e:
+                # initialization can fail (for example for cast volume is there is no volume or be case this will raise an error)
+                # then we want to keep the thread active
+                self._data_currently_computed = None
+                ProcessManager().notify_dataset_state(
+                    dataset=data, process=self._process_id, state=DatasetState.SKIPPED
+                )
+                _logger.processSkipped(f"thread initialization failed. Error is {e}")
+                if callback is not None:
+                    callback()
+                self.scan_ready(scan=data)
+            else:
+                # need to manage connect before starting it because
+                fct_callback = functools.partial(
+                    self._end_threaded_computation, callback
+                )
+                self._computationThread.finished.connect(fct_callback)
+                self._computationThread.start()
 
     def _end_computation(self, data, future_tomo_obj, callback):
         """

tomwer/version.py

@@ -77,7 +77,7 @@ RELEASE_LEVEL_VALUE = {
 
 MAJOR = 1
 MINOR = 3
-MICRO = 6
+MICRO = 8
 RELEV = "final"  # <16
 SERIAL = 0  # <16
 

{tomwer-1.3.6.dist-info → tomwer-1.3.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: tomwer
-Version: 1.3.6
+Version: 1.3.8
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: data analysis unit

{tomwer-1.3.6.dist-info → tomwer-1.3.8.dist-info}/RECORD

@@ -1,4 +1,4 @@
-tomwer-1.3.6-py3.11-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
+tomwer-1.3.8-py3.11-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
 orangecontrib/tomwer/__init__.py,sha256=B4DXy1gY_wXmNYa2aOfapmJb2mEuCAjoaNEGnpBs70g,148
 orangecontrib/tomwer/state_summary.py,sha256=5_dPzweL3r0ye4ZfJo6IV2ThJI8fQhWoO2ySdJJajj8,1711
 orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -220,7 +220,7 @@ orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px
 tomwer/__init__.py,sha256=82Jp1abyG4UWdGuT4nNU7LxaUV6xxkOte5pIz3w69Do,1745
 tomwer/__main__.py,sha256=jsDfWA2yl5am0dHQVkYwlKLxxqKNont6VDF-LusuawE,8575
 tomwer/utils.py,sha256=EgVwJ5CQVjoBvcKNwyVoXv_P4ciI11oxb8fNyy82Lck,8465
-tomwer/version.py,sha256=uL9QPJPqCFjLS5OtVGnrUyJmYbddVDNZ1-V5j_9cyhQ,4386
+tomwer/version.py,sha256=vS6XATV3d0rAAs4Uky7DLHRQoHjiaPVQC7dmaEz9nJA,4386
 tomwer/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/axis.py,sha256=Ax0wlTp9u0Ll_3ax23QP5Ck16_M9Kop7wx0hAbXrXyM,6004
 tomwer/app/canvas.py,sha256=RbQqgE7DuNjv4nGG6BNfnSevQO5_lCl7N71hGcLoxwE,1561
@@ -331,7 +331,7 @@ tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=z7nyfXhMrp0Q3hAN3NY
 tomwer/core/process/reconstruction/nabu/plane.py,sha256=Cgzth77M0pFgLDULmvmPj4bqFm5MvIMJ7Ien8mRqLsE,134
 tomwer/core/process/reconstruction/nabu/settings.py,sha256=JpHKf0smiXeWC8i9Mj7h3g67teJ3Gqycd-Uwg2yzGOQ,2279
 tomwer/core/process/reconstruction/nabu/target.py,sha256=_Z4gViprjR3Vm4KASqsASStLA9GM1wTyoi3Pg0PUSeg,1481
-tomwer/core/process/reconstruction/nabu/utils.py,sha256=gRs1fEw4qmNyf7R4j9XMo6IK7Y5q3NlkDeh6w2UAelI,17950
+tomwer/core/process/reconstruction/nabu/utils.py,sha256=SOU3DzYpzm4YwxVU1FwkHj0aJGfN7utWKtuFhe3HezA,18100
 tomwer/core/process/reconstruction/normalization/__init__.py,sha256=TDtATpMVFkEOT93wLXLpW0A_TOeiQDiM7AWAqX4FIB0,119
 tomwer/core/process/reconstruction/normalization/normalization.py,sha256=G-eAZIct47RvzvHNMbKsG4Dt58vTSKhvH-NnIMzxzOs,13210
 tomwer/core/process/reconstruction/normalization/params.py,sha256=porWC6G5lQWF-4JB03B56uGmuMxjx3u0ZMums-Bh2p8,4790
@@ -468,7 +468,7 @@ tomwer/gui/control/volumeselectorwidget.py,sha256=mpbofAawBpzdc46IEkucTuiFJRDP18
 tomwer/gui/control/datawatcher/__init__.py,sha256=4MnBP53SmxMTRpeM8NApgSsbh6HRKshwLdhpJt078jQ,1444
 tomwer/gui/control/datawatcher/configuration.py,sha256=E9RTx2hgF7JJKg8zOq6vFwWZYcKAWyvZkLR5g5TiBsw,10193
 tomwer/gui/control/datawatcher/controlwidget.py,sha256=qaT_QJCiMnmp21LnzGomnkBGX6Rvuxf3V_tktyEcSLI,3857
-tomwer/gui/control/datawatcher/datawatcher.py,sha256=tjiSksE3C_bjdf7olOvz6pdSzj6E5MlRg1kq137Jq-c,22592
+tomwer/gui/control/datawatcher/datawatcher.py,sha256=vfU04qzSioOAEo-Htb_R3peZuPGJAP1RytxlKH0evvs,21671
 tomwer/gui/control/datawatcher/datawatcherobserver.py,sha256=wm4uuFeBxyUrb_1Wfw4WASWhlKl0DKud5eihIh4Brt0,10543
 tomwer/gui/control/serie/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/gui/control/serie/nxtomoconcatenate.py,sha256=YyJssAnQauRhQ1jBg63uj1pXcdo2IsktebaQvpgx8YA,3131
@@ -757,7 +757,7 @@ tomwer/synctools/stacks/edit/darkflatpatch.py,sha256=dCP8Zk6f-toFUFzcnJHbF2bkTS0
 tomwer/synctools/stacks/edit/imagekeyeditor.py,sha256=NNDQWMJEuE50zBk_2zJAWbf6hC8J3QKV42YpPQAmV0U,5259
 tomwer/synctools/stacks/reconstruction/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/synctools/stacks/reconstruction/axis.py,sha256=9Gqh0isvLYupypOq3P7XM_lU4Hcni4l3V2aUZsAVLrc,8876
-tomwer/synctools/stacks/reconstruction/castvolume.py,sha256=_fmlozGxTuhzhtdpY-xtE0D7Oz2fxT4J4TTCSLDVyQI,7552
+tomwer/synctools/stacks/reconstruction/castvolume.py,sha256=PaoMuTxcj4Ms6N2MFnrCzmaCCC3wEZItYAwQ8NApe_o,8282
 tomwer/synctools/stacks/reconstruction/dkrefcopy.py,sha256=LlEtCh-nbftFo77s1QXnoISDQKQOBR-4AKfurgUj7zI,7040
 tomwer/synctools/stacks/reconstruction/nabu.py,sha256=dDqw74kobhkawquJIwLDQH--PN6LbbthlqZ9MQUBJi4,7816
 tomwer/synctools/stacks/reconstruction/normalization.py,sha256=wcw-tHjKUQMcija0bCExDl0InYsKHZNTeTk4w_hnaDI,5362
@@ -776,10 +776,10 @@ tomwer/tests/test_utils.py,sha256=D0rNDSK6csEOYBY_7gD-4A3jp8rYAm8L1_Xg34A9I2s,30
 tomwer/tests/utils.py,sha256=RAXx5A99WD4Vyuv_wjHBdr-Xu7UiThHRKw2eiB5GX10,107
 tomwer/third_part/WaitingOverlay.py,sha256=GnqiytcJDp_24Cmz_2nZAP5HfpL3Yh7AzR2ATIusGsg,3906
 tomwer/third_part/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer-1.3.6.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
-tomwer-1.3.6.dist-info/METADATA,sha256=0rHJ-_xiv99uLR6bp1igf01UZ0NtSPKkZbuPuaqU9So,11459
-tomwer-1.3.6.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-tomwer-1.3.6.dist-info/entry_points.txt,sha256=fIcDnCxjgwzfIylLYhUsFyiNZjZMxsfRQBxi4f-cJg8,440
-tomwer-1.3.6.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
-tomwer-1.3.6.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
-tomwer-1.3.6.dist-info/RECORD,,
+tomwer-1.3.8.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
+tomwer-1.3.8.dist-info/METADATA,sha256=jIXT7YZdgdVywrCwSaUS1rdSSwb-KCFx60Luxk2c8zw,11459
+tomwer-1.3.8.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+tomwer-1.3.8.dist-info/entry_points.txt,sha256=fIcDnCxjgwzfIylLYhUsFyiNZjZMxsfRQBxi4f-cJg8,440
+tomwer-1.3.8.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
+tomwer-1.3.8.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
+tomwer-1.3.8.dist-info/RECORD,,