tomwer 1.3.5__py3-none-any.whl → 1.3.7__py3-none-any.whl

tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py

@@ -0,0 +1,222 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "29/03/2022"
+
+
+import configparser
+from collections import namedtuple
+
+import numpy
+import pytest
+from silx.io.url import DataUrl
+from tomoscan.io import HDF5File
+from nabu.pipeline.config import get_default_nabu_config
+from nabu.pipeline.fullfield.nabu_config import (
+    nabu_config as nabu_fullfield_default_config,
+)
+from tomwer.core.process.reconstruction.nabu import settings as nabu_settings
+from tomwer.core.process.reconstruction.nabu.nabuslices import NabuSlicesTask
+from tomwer.core.process.reconstruction.normalization.normalization import (
+    SinoNormalizationTask,
+)
+from tomwer.core.process.reconstruction.normalization.params import (
+    SinoNormalizationParams,
+)
+from tomwer.core.utils.scanutils import MockNXtomo
+from tomwer.core.process.reconstruction.output import PROCESS_FOLDER_NAME
+
+try:
+    import nabu
+except ImportError:
+    has_nabu = False
+else:
+    has_nabu = True
+import os
+
+_norm_setting = namedtuple("_norm_setting", ["method", "source", "extra_infos"])
+
+_nabu_norm_field = namedtuple(
+    "_nabu_norm_field",
+    ["sino_normalization", "has_sino_normalization_file"],
+)
+
+
+normalization_config_test = (
+    # no normalization
+    (
+        _norm_setting(method="none", source=None, extra_infos=None),
+        _nabu_norm_field(
+            sino_normalization="",
+            has_sino_normalization_file=False,
+        ),
+    ),
+    # chebyshev normalization
+    (
+        _norm_setting(method="chebyshev", source=None, extra_infos=None),
+        _nabu_norm_field(
+            sino_normalization="chebyshev",
+            has_sino_normalization_file=False,
+        ),
+    ),
+    # divide by a scalar
+    (
+        _norm_setting(method="division", source="scalar", extra_infos={"value": 12.0}),
+        _nabu_norm_field(
+            sino_normalization="division",
+            has_sino_normalization_file=True,
+        ),
+    ),
+    # substract a roi
+    (
+        _norm_setting(
+            method="subtraction",
+            source="manual ROI",
+            extra_infos={
+                "start_x": 0.0,
+                "end_x": 1.0,
+                "start_y": 0.0,
+                "end_y": 1.0,
+                "calc_fct": "mean",
+                "calc_area": "volume",
+                "calc_method": "scalar",
+            },
+        ),
+        _nabu_norm_field(
+            sino_normalization="subtraction",
+            has_sino_normalization_file=True,
+        ),
+    ),
+    # substract from a dataset
+    (
+        _norm_setting(
+            method="subtraction",
+            source="from dataset",
+            extra_infos={
+                "dataset_url": DataUrl(
+                    file_path="random_dataset.hdf5",
+                    data_path="data",
+                    scheme="silx",
+                ),
+                "calc_fct": "median",
+                "calc_area": "volume",
+                "calc_method": "scalar",
+            },
+        ),
+        _nabu_norm_field(
+            sino_normalization="subtraction",
+            has_sino_normalization_file=True,
+        ),
+    ),
+)
+
+
+@pytest.mark.skipif(
+    (not has_nabu or nabu.version < "2022.2"),
+    reason="nabu not available or the current version doesn't handle sino normlaization yet",
+)
+@pytest.mark.parametrize(
+    "norm_setting, expected_nabu_conf", [item for item in normalization_config_test]
+)
+def test_normalization(norm_setting, expected_nabu_conf, tmp_path):
+    """
+    Insure normalization is correctly provided to nabu configuration file
+    For this run a normalization process followed by a nabu process.
+    """
+    scan_dir = tmp_path / "scan"
+    scan_dir.mkdir()
+
+    nabu_cfg_folders = os.path.join(scan_dir, nabu_settings.NABU_CFG_FILE_FOLDER)
+    os.makedirs(nabu_cfg_folders, exist_ok=True)
+
+    random_dataset_file = os.path.join(nabu_cfg_folders, "random_dataset.hdf5")
+
+    # create a random dataset if necessary
+    with HDF5File(random_dataset_file, mode="w") as h5f:
+        h5f["data"] = numpy.ones((20, 20))
+
+    mock = MockNXtomo(
+        scan_path=scan_dir,
+        n_proj=10,
+        n_ini_proj=10,
+        scan_range=180,
+        dim=20,
+    )
+    scan = mock.scan
+
+    cfg_folder = os.path.join(str(scan_dir), PROCESS_FOLDER_NAME, "nabu_cfg_files")
+    cfg_file = os.path.join(cfg_folder, "entry_scan.cfg")
+    assert not os.path.exists(cfg_file)
+    norm_params = SinoNormalizationParams(
+        method=norm_setting.method,
+        source=norm_setting.source,
+        extra_infos=norm_setting.extra_infos,
+    )
+
+    normalization = SinoNormalizationTask(
+        inputs={
+            "data": scan,
+            "configuration": norm_params.to_dict(),
+            "serialize_output_data": False,
+        },
+        varinfo=None,
+    )
+    normalization.run()
+
+    # insure the method is style valid
+    assert scan.intensity_normalization.method.value == norm_setting.method
+    assert (
+        "tomwer_processing_res_code" in scan.intensity_normalization.get_extra_infos()
+    )
+
+    process = NabuSlicesTask(
+        inputs={
+            "data": scan,
+            "dry_run": True,
+            "nabu_params": get_default_nabu_config(nabu_fullfield_default_config),
+            "serialize_output_data": False,
+        },
+        varinfo=None,
+    )
+    process.run()
+    assert os.path.exists(cfg_file)
+
+    configuration = configparser.ConfigParser(allow_no_value=True)
+    configuration.read(cfg_file)
+
+    preproc_section = configuration["preproc"]
+    sino_normalization = preproc_section.get("sino_normalization", "")
+    sino_normalization_file = preproc_section.get("sino_normalization_file", "")
+    assert sino_normalization == expected_nabu_conf.sino_normalization
+    if expected_nabu_conf.has_sino_normalization_file:
+        url = DataUrl(path=sino_normalization_file)
+        assert url.is_valid()
+    else:
+        assert sino_normalization_file == ""
+    assert (
+        "tomwer_processing_res_code" in scan.intensity_normalization.get_extra_infos()
+    )

tomwer/core/process/script/test/test_script.py

@@ -0,0 +1,68 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2021 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "18/06/2021"
+
+
+import os
+import shutil
+import tempfile
+import unittest
+
+from tomwer.core.process.script.python import PythonScript
+from tomwer.core.utils.scanutils import MockNXtomo
+
+
+class TestPythonScript(unittest.TestCase):
+    def setUp(self):
+        self.tempdir = tempfile.mkdtemp()
+        dim = 10
+        mock = MockNXtomo(
+            scan_path=os.path.join(self.tempdir, "scan1"),
+            n_proj=10,
+            n_ini_proj=10,
+            scan_range=180,
+            dim=dim,
+        )
+        self.scan = mock.scan
+
+    def tearDown(self):
+        shutil.rmtree(self.tempdir)
+
+    def test(self):
+        process = PythonScript(inputs={"data": self.scan})
+        process.definition()
+        process.program_version()
+        process.program_name()
+        # TODO: configuration should be passed in inputs during construction
+        process.set_configuration(
+            {
+                "scriptText": "print('toto')",
+            }
+        )
+
+        process.run()

tomwer/core/process/stitching/test/test_metadataholder.py

@@ -0,0 +1,17 @@
+from tomwer.core.process.stitching.metadataholder import StitchingMetadata
+
+
+def test_to_dict_from_dict():
+    """Test conversion of StitchingMetadata from dict and to dict"""
+    metadata = StitchingMetadata(tomo_obj=None)
+    metadata._pixel_or_voxel_size = [12.3, 2.5, None]
+    metadata._pos_as_m = [None, 3.6, None]
+    metadata._pos_as_px = [5, 9, 8]
+
+    ddict = metadata.to_dict()
+    assert isinstance(ddict, dict)
+
+    loaded_metadata = StitchingMetadata.from_dict(ddict, tomo_obj=None)
+    assert loaded_metadata == metadata
+    assert loaded_metadata.to_dict() == ddict
+    assert isinstance(str(loaded_metadata), str)

tomwer/core/process/task.py

@@ -46,7 +46,8 @@ from ewokscore.task import Task as _EwoksTask
 from ewokscore.taskwithprogress import TaskWithProgress as _EwoksTaskWithProgress
 from silx.io.dictdump import dicttoh5, h5todict
 from silx.io.utils import h5py_read_dataset
-from tomoscan.io import HDF5File, get_swmr_mode
+from silx.io.utils import open as open_hdf5
+from tomoscan.io import HDF5File
 from tomwer.core.utils.locker import FileLockerManager
 
 
@@ -376,7 +377,7 @@ class BaseProcessInfo:
         :rtype: list
         """
         # retrieve process to load
-        with HDF5File(process_file, mode="r", swmr=get_swmr_mode()) as h5f:
+        with open_hdf5(process_file) as h5f:
             if entry is None:
                 if len(h5f.keys()) > 0:
                     root = h5f[list(h5f.keys())[0]]

tomwer/core/process/test/test_data_transfer.py

@@ -42,7 +42,8 @@ from nxtomomill.converter import from_h5_to_nx
 from nxtomomill.io.config.hdf5config import TomoHDF5Config
 from nxtomo.nxobject.nxdetector import ImageKey
 
-from tomoscan.io import HDF5File, get_swmr_mode
+from silx.io.utils import open as open_hdf5
+from tomoscan.io import HDF5File
 from tomoscan.validator import is_valid_for_reconstruction
 
 from tomwer.core.process.control.datalistener import DataListener
@@ -335,9 +336,9 @@ class NXTomoDataTransferBase(unittest.TestCase):
         dst_scan = process.outputs.data
         assert dst_scan.master_file != self.nexus_file_path
         assert is_valid_for_reconstruction(dst_scan, check_values=True)
-        with HDF5File(src_scan.master_file, mode="r", swmr=get_swmr_mode()) as h5s_src:
+        with open_hdf5(src_scan.master_file) as h5s_src:
             src_dataset = h5s_src["entry0000/detector/data"][...]
-        with HDF5File(dst_scan.master_file, mode="r", swmr=get_swmr_mode()) as h5s_dst:
+        with open_hdf5(dst_scan.master_file) as h5s_dst:
             dst_dataset = h5s_dst["entry0000/detector/data"][...]
         assert numpy.array_equal(src_dataset, dst_dataset)
 

tomwer/core/process/visualization/test/test_data_viewer.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.dataviewer import _DataViewerPlaceHolder
+
+
+def test_data_viewer():
+    process = _DataViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_diff_viewer.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.diffviewer import _DiffViewerPlaceHolder
+
+
+def test_diff_viewer():
+    process = _DiffViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_image_stack_viewer.py

@@ -0,0 +1,41 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.imagestackviewer import (
+    _ImageStackViewerPlaceHolder,
+)
+
+
+def test_image_stack_viewer():
+    process = _ImageStackViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_radio_stack.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.radiostack import _RadioStackPlaceHolder
+
+
+def test_radio_stack():
+    process = _RadioStackPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_sample_moved.py

@@ -0,0 +1,41 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.imagestackviewer import (
+    _ImageStackViewerPlaceHolder,
+)
+
+
+def test_sample_moved():
+    process = _ImageStackViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_sinogram_viewer.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.sinogramviewer import _SinogramViewerPlaceHolder
+
+
+def test_sinogram_viewer():
+    process = _SinogramViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_slice_stack.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.slicestack import _SliceStackPlaceHolder
+
+
+def test_slice_stack():
+    process = _SliceStackPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()

tomwer/core/process/visualization/test/test_volume_viewer.py

@@ -0,0 +1,39 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2019 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "10/12/2021"
+
+
+from tomwer.core.process.visualization.volumeviewer import _VolumeViewerPlaceHolder
+
+
+def test_volume_viewer():
+    process = _VolumeViewerPlaceHolder(
+        inputs={
+            "data": None,
+        }
+    )
+    process.run()