tomwer 1.3.25__py3-none-any.whl → 1.3.27__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +184 -184
- tomwer/core/process/reconstruction/nabu/utils.py +1 -1
- tomwer/gui/reconstruction/axis/radioaxis.py +0 -1
- tomwer/gui/stitching/stitching.py +4 -3
- tomwer/version.py +1 -1
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/METADATA +1 -1
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/RECORD +13 -13
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/WHEEL +1 -1
- /tomwer-1.3.25-py3.11-nspkg.pth → /tomwer-1.3.27-py3.11-nspkg.pth +0 -0
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/LICENSE +0 -0
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/entry_points.txt +0 -0
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/namespace_packages.txt +0 -0
- {tomwer-1.3.25.dist-info → tomwer-1.3.27.dist-info}/top_level.txt +0 -0
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import logging
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from orangewidget import gui
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from orangewidget.settings import Setting
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from orangewidget.widget import Input, Output
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from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
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from silx.gui import qt
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from typing import Optional
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from tomwer.core.futureobject import FutureTomwerObject
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from tomwer.core.scan.scanbase import TomwerScanBase
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from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
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from tomwer.core.process.reconstruction.nabu.helical import (
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from tomwer.core.scan.nxtomoscan import NXtomoScan
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_logger = logging.getLogger(__name__)
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class NabuHelicalPrepareWeightsDoubleOW(
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# import logging
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# from orangewidget import gui
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# from orangewidget.settings import Setting
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# from orangewidget.widget import Input, Output
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# from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
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# from silx.gui import qt
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# from typing import Optional
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# from tomwer.core.futureobject import FutureTomwerObject
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# from tomwer.core.scan.scanbase import TomwerScanBase
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# from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
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# from tomwer.core.process.reconstruction.nabu.helical import (
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# NabuHelicalPrepareWeightsDouble,
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# )
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# from tomwer.core.scan.nxtomoscan import NXtomoScan
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# _logger = logging.getLogger(__name__)
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# class NabuHelicalPrepareWeightsDoubleOW(
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# TomwerWithStackStack,
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# ewokstaskclass=NabuHelicalPrepareWeightsDouble,
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# ):
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# """
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# widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
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# :param parent: the parent widget
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# """
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# # note of this widget should be the one registered on the documentation
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# name = "helical prerate weights double"
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# id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
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# description = "compute map of weights requested for nabu helical reconstruction"
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# icon = "icons/nabu_prepare_weights_double.svg"
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# priority = 199
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# keywords = [
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# "tomography",
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# "nabu",
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# "reconstruction",
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# "nabu-helical",
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# "helical",
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# "weights",
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# "prepare",
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# ]
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# want_main_area = True
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# want_control_area = False
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# resizing_enabled = True
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# _ewoks_default_inputs = Setting(
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# {
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# "data": None,
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# "transition_width_vertical": 50,
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# "transition_width_horizontal": 50,
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# "processes_file": "",
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# "rotation_axis_position": 0,
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# }
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# )
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# _ewoks_inputs_to_hide_from_orange = (
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# "progress",
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# "processes_file",
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# "transition_width_vertical",
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# "transition_width_horizontal",
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# "rotation_axis_position",
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# )
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# sigScanReady = qt.Signal(TomwerScanBase)
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# "Signal emitted when a scan is ended"
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# TIMEOUT = 30
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# class Inputs:
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# data = Input(
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# name="data",
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# type=TomwerScanBase,
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# doc="one scan to be process",
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# default=True,
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# multiple=False,
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# )
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# class Outputs:
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# data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
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# future_tomo_obj = Output(
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# name="future_tomo_obj",
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# type=FutureTomwerObject,
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# doc="future object (process remotely)",
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# )
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# LOGGER = _logger
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# def __init__(self, parent=None):
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# super().__init__(parent)
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# self.__scan = None
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# # gui definition
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# _layout = gui.vBox(self.mainArea, self.name).layout()
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# self.widget = HelicalPrepareWeightsDouble(parent=self)
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# _layout.addWidget(self.widget)
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# ## connect signal / slot
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# self.widget.sigConfigChanged.connect(self._updateSettings)
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# if isinstance(self.task_output_changed_callbacks, set):
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# self.task_output_changed_callbacks.add(self._notify_state)
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# elif isinstance(self.task_output_changed_callbacks, list):
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# self.task_output_changed_callbacks.append(self._notify_state)
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# else:
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# raise NotImplementedError
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# ## handle settings
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# self._loadSettings()
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# self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
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# def _updateSettings(self):
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# config = self.widget.getConfiguration()
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# for key in ("transition_width", "processes_file"):
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# self._ewoks_default_inputs[key] = config[key] # pylint: disable=E1137
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# @property
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# def request_input(self):
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# return self.__request_input
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# @request_input.setter
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# def request_input(self, request):
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# self.__request_input = request
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# def get_task_inputs(self):
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# assert self.__scan is not None
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# return {
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# "data": self.__scan,
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# "transition_width": self.widget.getConfiguration()["transition_width"],
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# "processes_file": self.widget.getConfiguration()["processes_file"],
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# }
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# def handleNewSignals(self) -> None:
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# """Invoked by the workflow signal propagation manager after all
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# signals handlers have been called.
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# """
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# # for now we want to avoid propagation any processing.
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# # task will be executed only when the user validates the dialog
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# data = super().get_task_inputs().get("data", None)
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# if data is not None:
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# if not isinstance(data, NXtomoScan):
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# raise TypeError(
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# f"data is expected to be an instance of NXtomoScan. {type(data)} are not handled"
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# )
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# self.add(data.path)
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# def _loadSettings(self):
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# self.widget.setConfiguration(self._ewoks_default_inputs)
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# def _newTaskStarted(self):
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# try:
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# task_executor = self.sender()
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# scan = task_executor.current_task.inputs.data
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# self.notify_on_going(scan)
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# except Exception:
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# pass
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# def _notify_state(self):
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# try:
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# task_executor = self.sender()
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# task_suceeded = task_executor.succeeded
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# scan = task_executor.current_task.outputs.data
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# if task_suceeded:
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# self.notify_succeed(scan=scan)
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# else:
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# self.notify_failed(scan=scan)
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# except Exception as e:
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# _logger.error(f"failed to handle task finished callback. Raiseon is {e}")
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# @Inputs.data
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# def process_data(self, scan: Optional[TomwerScanBase]):
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# if scan is None:
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# return
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# else:
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# self.__scan = scan
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# self.notify_pending(scan=scan)
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# self.execute_ewoks_task()
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# def sizeHint(self) -> qt.QSize:
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# return qt.QSize(650, 60)
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class _NabuMode(_Enum):
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FULL_FIELD = "standard acquisition"
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HALF_ACQ = "half acquisition"
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HELICAL = "helical acquisition"
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# HELICAL = "helical acquisition"
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class _NabuStages(_Enum):
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import logging
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import shutil
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import tempfile
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import functools
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# separator
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toolbar.addSeparator()
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# configuration level / mode
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self.__configurationModesAction = qt.QAction(self)
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self.__configurationModesAction.setCheckable(False)
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menu = qt.QMenu(self)
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self._callbackToSetSlurmConfig = callback
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def close(self):
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# remove folder used for preview
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shutil.rmtree(self._previewFolder, ignore_errors=True)
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self._widget.close()
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# requested for the waiting plot update
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super().close()
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def getPreviewFolder(self):
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if self._previewFolder is None:
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# TODO: improve management of file: must be removed when the widget is closed...
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self._previewFolder = tempfile.mkdtemp(prefix="tomwer_stitcher_preview")
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return self._previewFolder
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tomo_obj = existing_tomo_obj.get(tomo_obj_id, None)
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if tomo_obj is None:
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continue
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# TODO: recuperer le tomo obj a partir de l'identifiant
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if update_requested[0]:
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tomo_obj.stitching_metadata.setPxPos(int(new_axis_0_pos), 0)
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if update_requested[2]:
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tomwer/version.py
CHANGED
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tomwer-1.3.
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tomwer-1.3.27-py3.11-nspkg.pth,sha256=UYCZtLWueceGiAlmXKRJUZ0TWQEubpPoQ1pVnAAsME0,502
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2
2
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orangecontrib/tomwer/__init__.py,sha256=B4DXy1gY_wXmNYa2aOfapmJb2mEuCAjoaNEGnpBs70g,148
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3
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orangecontrib/tomwer/state_summary.py,sha256=5_dPzweL3r0ye4ZfJo6IV2ThJI8fQhWoO2ySdJJajj8,1711
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4
4
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orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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@@ -152,7 +152,7 @@ orangecontrib/tomwer/widgets/other/icons/hub.svg,sha256=9EYoBKY-P-cO17nM48OPA9VD
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orangecontrib/tomwer/widgets/reconstruction/AxisOW.py,sha256=ffbMYzHWALir19bZhpXjYIgMfJjyyaeov9Uxp5tNyGs,22342
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orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py,sha256=Ev-TrwZ-HxmdMfZMsz512vhCOgXpGImVsdNdlPSnQIM,9604
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orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py,sha256=nToQw3tj9Wm8s3wPsVBeMYh_F6FBtCsAKLsc2Dic4kk,11066
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155
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orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py,sha256=
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155
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orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py,sha256=wEtgqonyhoPZQfARnJt86e5vUktzvY7e0zf15lqmyBY,6275
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orangecontrib/tomwer/widgets/reconstruction/NabuOW.py,sha256=LzHxCuLrEQIVeGaYmcEO7rwxaT98mbXPdpMc6dCaAHE,12673
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orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py,sha256=B4iZdYHmbsim4qQD5UaMCg2lcJa3ZAim3_AZQC7bYIk,19195
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orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py,sha256=MS9l5_li0uglg-7UtY06sAaMTg01mBvI07LuYU2fbXg,18724
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@@ -220,7 +220,7 @@ orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px
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tomwer/__init__.py,sha256=82Jp1abyG4UWdGuT4nNU7LxaUV6xxkOte5pIz3w69Do,1745
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tomwer/__main__.py,sha256=jsDfWA2yl5am0dHQVkYwlKLxxqKNont6VDF-LusuawE,8575
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tomwer/utils.py,sha256=o6TW9xqGYyYLHUGvLiiYEiiDHP6lwWlX63jMLPNh374,8432
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-
tomwer/version.py,sha256=
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223
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tomwer/version.py,sha256=LikiIr1yDr-8aLRvF79YWYIuT7PctqXWLiTbACX6erc,4387
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tomwer/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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tomwer/app/axis.py,sha256=Ax0wlTp9u0Ll_3ax23QP5Ck16_M9Kop7wx0hAbXrXyM,6004
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tomwer/app/canvas.py,sha256=RbQqgE7DuNjv4nGG6BNfnSevQO5_lCl7N71hGcLoxwE,1561
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@@ -331,7 +331,7 @@ tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=z7nyfXhMrp0Q3hAN3NY
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tomwer/core/process/reconstruction/nabu/plane.py,sha256=Cgzth77M0pFgLDULmvmPj4bqFm5MvIMJ7Ien8mRqLsE,134
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tomwer/core/process/reconstruction/nabu/settings.py,sha256=JpHKf0smiXeWC8i9Mj7h3g67teJ3Gqycd-Uwg2yzGOQ,2279
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tomwer/core/process/reconstruction/nabu/target.py,sha256=_Z4gViprjR3Vm4KASqsASStLA9GM1wTyoi3Pg0PUSeg,1481
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-
tomwer/core/process/reconstruction/nabu/utils.py,sha256=
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334
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tomwer/core/process/reconstruction/nabu/utils.py,sha256=Yih8BSAPLXC6MZ6yiVX6AHnkjUsYpSOoaUE6suBmBaQ,18435
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tomwer/core/process/reconstruction/normalization/__init__.py,sha256=TDtATpMVFkEOT93wLXLpW0A_TOeiQDiM7AWAqX4FIB0,119
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tomwer/core/process/reconstruction/normalization/normalization.py,sha256=G-eAZIct47RvzvHNMbKsG4Dt58vTSKhvH-NnIMzxzOs,13210
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tomwer/core/process/reconstruction/normalization/params.py,sha256=porWC6G5lQWF-4JB03B56uGmuMxjx3u0ZMums-Bh2p8,4790
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@@ -508,7 +508,7 @@ tomwer/gui/reconstruction/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJW
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tomwer/gui/reconstruction/axis/CompareImages.py,sha256=mrlXPCgq71lzmA_XACqrjdzRTK1iYJQBMrJMaeKZAq8,12870
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509
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tomwer/gui/reconstruction/axis/__init__.py,sha256=fUKWiRiG2o4Y-9RN-41VZMMM8L9Srl6QCn942VL5szY,94
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510
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tomwer/gui/reconstruction/axis/axis.py,sha256=ygo7QHTKVGK2_zUZQsfl9uKbbGt_Es5kj-MaBzOe3hc,27607
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511
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-
tomwer/gui/reconstruction/axis/radioaxis.py,sha256=
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511
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+
tomwer/gui/reconstruction/axis/radioaxis.py,sha256=Pn28yfTXEPE6C0-LkDiFJKShKIVMzea0NAMqBCWJiC8,92717
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tomwer/gui/reconstruction/darkref/__init__.py,sha256=g9LASP8OJjxCPEHXO14hN0OLjLkeUve6etaPm1LIz4c,1373
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tomwer/gui/reconstruction/darkref/darkrefcopywidget.py,sha256=cfU2EJv_9LfCrKTHwnYwt2Kj4G6lMPbw0lbD-yjyT-Y,12053
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514
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tomwer/gui/reconstruction/darkref/darkrefwidget.py,sha256=O33udHaezaanZD9L5D525KrB4FD77g_Spr7gAUxGEag,16468
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@@ -553,7 +553,7 @@ tomwer/gui/stitching/axisorderedlist.py,sha256=w74JrsazMtcrviSPRov61Yd2JguHgNRj9
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tomwer/gui/stitching/metadataholder.py,sha256=jeR6_DM529aEmxQLeLM3CB-49GHq6KLY2Nc24kSC-HA,913
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tomwer/gui/stitching/normalization.py,sha256=EuHyoMcjcOnqO7_gepvcjiQx3DBkSZhsNApOiG-o3yM,4454
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tomwer/gui/stitching/stitchandbackground.py,sha256=0qavlnjKLCf5VcQn6KPHdQxTUG6s2dpW-pSbuJulEa8,5982
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556
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-
tomwer/gui/stitching/stitching.py,sha256=
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556
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+
tomwer/gui/stitching/stitching.py,sha256=UdY4kI8SmCSUuoSWGYndLwILIM7mS0TbZCmUi2xxHkA,56966
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557
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tomwer/gui/stitching/stitching_preview.py,sha256=DYkGXw7Tolef6GkmzfDLCbv-f9v92pHUi4K7T-aTokQ,9669
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tomwer/gui/stitching/stitching_raw.py,sha256=eRCWpBa6scTe1FeSyvMK-3pepx-G-cg1EWEXQzotvhk,22353
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tomwer/gui/stitching/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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@@ -776,10 +776,10 @@ tomwer/tests/test_utils.py,sha256=D0rNDSK6csEOYBY_7gD-4A3jp8rYAm8L1_Xg34A9I2s,30
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776
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tomwer/tests/utils.py,sha256=RAXx5A99WD4Vyuv_wjHBdr-Xu7UiThHRKw2eiB5GX10,107
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777
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tomwer/third_part/WaitingOverlay.py,sha256=GnqiytcJDp_24Cmz_2nZAP5HfpL3Yh7AzR2ATIusGsg,3906
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778
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tomwer/third_part/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
779
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-
tomwer-1.3.
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780
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tomwer-1.3.
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781
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tomwer-1.3.
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tomwer-1.3.
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tomwer-1.3.
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tomwer-1.3.
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785
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tomwer-1.3.
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779
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+
tomwer-1.3.27.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
|
780
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+
tomwer-1.3.27.dist-info/METADATA,sha256=znDWpLXBa0a584TQ-5A2cbLF0hIIGnVp2uROQG5N29Y,10723
|
781
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+
tomwer-1.3.27.dist-info/WHEEL,sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY,91
|
782
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+
tomwer-1.3.27.dist-info/entry_points.txt,sha256=fIcDnCxjgwzfIylLYhUsFyiNZjZMxsfRQBxi4f-cJg8,440
|
783
|
+
tomwer-1.3.27.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
|
784
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+
tomwer-1.3.27.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
|
785
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+
tomwer-1.3.27.dist-info/RECORD,,
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File without changes
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File without changes
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File without changes
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File without changes
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File without changes
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