tomwer 1.3.23__py3-none-any.whl → 1.3.25__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- tomwer/app/zstitching.py +0 -1
- tomwer/core/cluster/cluster.py +0 -9
- tomwer/core/process/control/datalistener/datalistener.py +4 -1
- tomwer/core/process/reconstruction/nabu/utils.py +0 -1
- tomwer/core/utils/scanutils.py +1 -0
- tomwer/gui/cluster/slurm.py +0 -21
- tomwer/gui/cluster/test/test_cluster.py +0 -1
- tomwer/tests/datasets.py +1 -0
- tomwer/version.py +1 -1
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/METADATA +2 -2
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/RECORD +17 -17
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/WHEEL +1 -1
- /tomwer-1.3.23-py3.12-nspkg.pth → /tomwer-1.3.25-py3.11-nspkg.pth +0 -0
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/LICENSE +0 -0
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/entry_points.txt +0 -0
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/namespace_packages.txt +0 -0
- {tomwer-1.3.23.dist-info → tomwer-1.3.25.dist-info}/top_level.txt +0 -0
tomwer/app/zstitching.py
CHANGED
@@ -56,7 +56,6 @@ class MainWidget(qt.QTabWidget):
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"partition": settingsClass.PARTITION,
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"n_gpus": settingsClass.N_GPUS_PER_WORKER,
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"job_name": settingsClass.PROJECT_NAME,
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"walltime": settingsClass.DEFAULT_WALLTIME,
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"python_venv": settingsClass.PYTHON_VENV,
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}
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)
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tomwer/core/cluster/cluster.py
CHANGED
@@ -48,7 +48,6 @@ class SlurmClusterConfiguration:
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queue=_SlurmSettings.PARTITION,
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n_gpus=_SlurmSettings.N_GPUS_PER_WORKER,
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project_name=_SlurmSettings.PROJECT_NAME,
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walltime=_SlurmSettings.DEFAULT_WALLTIME,
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python_venv=_SlurmSettings.PYTHON_VENV,
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n_jobs=_SlurmSettings.N_JOBS,
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modules_to_load: tuple = _SlurmSettings.MODULES_TO_LOAD,
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@@ -60,7 +59,6 @@ class SlurmClusterConfiguration:
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self._queue = queue
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self._n_gpus = n_gpus
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self._project_name = project_name
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self._walltime = walltime
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self._python_venv = python_venv
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self._modules_to_load = modules_to_load
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self._n_jobs = n_jobs
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@@ -98,10 +96,6 @@ class SlurmClusterConfiguration:
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def project_name(self):
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return self._project_name
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@property
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def walltime(self):
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return self._walltime
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@property
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def python_venv(self):
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return self._python_venv
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@@ -132,7 +126,6 @@ class SlurmClusterConfiguration:
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"partition": self.queue,
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"n_gpus": self.n_gpus,
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"job_name": self.project_name,
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"walltime": self.walltime,
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"python_venv": self.python_venv,
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"modules": self.modules_to_load,
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"sbatch_extra_params": self.sbatch_extra_params,
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@@ -157,8 +150,6 @@ class SlurmClusterConfiguration:
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self._n_gpus = dict_["n_gpus"]
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if "job_name" in dict_:
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self._project_name = dict_["job_name"]
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if "walltime" in dict_:
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self._walltime = dict_["walltime"]
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if "python_venv" in dict_:
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self._python_venv = dict_["python_venv"]
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modules = dict_.get("modules", None)
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@@ -60,7 +60,10 @@ try:
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except ImportError:
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from nxtomomill.converter.hdf5.acquisition.baseacquisition import BaseAcquisition
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-
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try:
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_SCAN_NUMBER_PATH = BaseAcquisition._SCAN_NUMBER_PATH
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except ImportError:
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_SCAN_NUMBER_PATH = None
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_logger = logging.getLogger(__name__)
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tomwer/core/utils/scanutils.py
CHANGED
@@ -40,6 +40,7 @@ from silx.io.utils import h5py_read_dataset
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from tomoscan.esrf.scan.mock import MockEDF as _MockEDF
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from tomoscan.esrf.scan.mock import MockNXtomo as _MockNXtomo
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from tomoscan.io import HDF5File
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+
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try:
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from tomoscan.test.utils import MockContext
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except ImportError:
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tomwer/gui/cluster/slurm.py
CHANGED
@@ -166,7 +166,6 @@ class SlurmSettingsWindow(qt.QMainWindow):
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"partition": settingsClass.PARTITION,
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"n_gpus": settingsClass.N_GPUS_PER_WORKER,
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"job_name": settingsClass.PROJECT_NAME,
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"walltime": settingsClass.DEFAULT_WALLTIME,
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"python_venv": settingsClass.PYTHON_VENV,
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"modules": settingsClass.MODULES_TO_LOAD,
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}
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@@ -261,11 +260,6 @@ class SlurmSettingsWidget(qt.QWidget):
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self._nJobsLabel.setVisible(jobLimitation is None)
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self._nJobs.setVisible(jobLimitation is None)
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# wall time
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self._wallTimeQLE = qt.QLineEdit("", self)
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self._wallTimeLabel = qt.QLabel("wall time", self)
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self.layout().addRow(self._wallTimeLabel, self._wallTimeQLE)
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# python exe / modules
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self._preProcessingGroup = qt.QGroupBox("pre-processing", self)
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self._preProcessingGroup.setLayout(qt.QFormLayout())
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@@ -356,8 +350,6 @@ class SlurmSettingsWidget(qt.QWidget):
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self._sbatchAdvancedParameters.layout().addRow("-C (gpu card)", self._gpuCardCB)
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# simplify gui
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self._wallTimeLabel.hide()
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self._wallTimeQLE.hide()
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self._dashboardPort.hide()
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self._dashboardPortLabel.hide()
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self._jobName.hide()
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@@ -376,7 +368,6 @@ class SlurmSettingsWidget(qt.QWidget):
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self._queue.setCurrentText(SlurmSettings.PARTITION)
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self._nGpu.setValue(n_gpu)
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self._jobName.setText(SlurmSettings.PROJECT_NAME)
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self._wallTimeQLE.setText(SlurmSettings.DEFAULT_WALLTIME)
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self._modulesCB.setChecked(True) # by default we go for modules
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self._preProcessingModeChanged()
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self._partitionChanged()
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@@ -389,7 +380,6 @@ class SlurmSettingsWidget(qt.QWidget):
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self._queue.currentTextChanged.connect(self._configurationChanged)
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self._nGpu.valueChanged.connect(self._configurationChanged)
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self._jobName.editingFinished.connect(self._configurationChanged)
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self._wallTimeQLE.editingFinished.connect(self._configurationChanged)
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self._pythonVenv.editingFinished.connect(self._configurationChanged)
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self._modulesQLE.editingFinished.connect(self._configurationChanged)
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self._preProcessingButtonGroup.buttonClicked.connect(self._configurationChanged)
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@@ -452,12 +442,6 @@ class SlurmSettingsWidget(qt.QWidget):
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def setProjectName(self, name):
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self._jobName.setText(name)
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def getWallTime(self):
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return self._wallTimeQLE.text()
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def setWallTime(self, walltime):
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self._wallTimeQLE.setText(walltime)
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def getPythonExe(self):
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if self._sourceScriptCB.isChecked():
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return self._pythonVenv.text()
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@@ -548,10 +532,6 @@ class SlurmSettingsWidget(qt.QWidget):
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if project_name is not None:
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self.setProjectName(project_name)
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wall_time = config.get("walltime", None)
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if wall_time is not None:
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self.setWallTime(wall_time)
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python_venv = config.get("python_venv", None)
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if python_venv is not None:
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python_venv = python_venv.rstrip("'").rstrip('"')
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@@ -582,7 +562,6 @@ class SlurmSettingsWidget(qt.QWidget):
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"partition": self.getQueue(),
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"n_gpus": self.getNGPU(),
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"job_name": self.getProjectName(),
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"walltime": self.getWallTime(),
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"sbatch_extra_params": self.getSBatchExtraParams(),
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}
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if self._modulesCB.isChecked():
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tomwer/tests/datasets.py
CHANGED
tomwer/version.py
CHANGED
@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: tomwer
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Version: 1.3.
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Version: 1.3.25
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Summary: "tomography workflow tools"
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Home-page: https://gitlab.esrf.fr/tomotools/tomwer
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Author: data analysis unit
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@@ -25,7 +25,7 @@ Requires-Dist: numpy
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Requires-Dist: setuptools
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Requires-Dist: psutil
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Requires-Dist: silx[full] >=2.0
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Requires-Dist: tomoscan
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Requires-Dist: tomoscan <2.1,>=2.0.0a11
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Requires-Dist: nxtomo <1.3,>=1.2.3rc1
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Requires-Dist: nxtomomill <1.1,>=1.0dev
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Requires-Dist: processview >=1.3
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@@ -1,4 +1,4 @@
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1
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tomwer-1.3.
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tomwer-1.3.25-py3.11-nspkg.pth,sha256=UYCZtLWueceGiAlmXKRJUZ0TWQEubpPoQ1pVnAAsME0,502
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orangecontrib/tomwer/__init__.py,sha256=B4DXy1gY_wXmNYa2aOfapmJb2mEuCAjoaNEGnpBs70g,148
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orangecontrib/tomwer/state_summary.py,sha256=5_dPzweL3r0ye4ZfJo6IV2ThJI8fQhWoO2ySdJJajj8,1711
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orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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@@ -220,7 +220,7 @@ orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px
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tomwer/__init__.py,sha256=82Jp1abyG4UWdGuT4nNU7LxaUV6xxkOte5pIz3w69Do,1745
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tomwer/__main__.py,sha256=jsDfWA2yl5am0dHQVkYwlKLxxqKNont6VDF-LusuawE,8575
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tomwer/utils.py,sha256=o6TW9xqGYyYLHUGvLiiYEiiDHP6lwWlX63jMLPNh374,8432
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tomwer/version.py,sha256=
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tomwer/version.py,sha256=PNDHR044uzeRANXIRpsABtCh9cCq6sO2BIeGHBhBYjs,4387
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tomwer/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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tomwer/app/axis.py,sha256=Ax0wlTp9u0Ll_3ax23QP5Ck16_M9Kop7wx0hAbXrXyM,6004
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tomwer/app/canvas.py,sha256=RbQqgE7DuNjv4nGG6BNfnSevQO5_lCl7N71hGcLoxwE,1561
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@@ -243,7 +243,7 @@ tomwer/app/scanviewer.py,sha256=yEaJ78p0ZaDVmk9pdKrEC7UqbabT59hzmAudy44jaiU,2708
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tomwer/app/sinogramviewer.py,sha256=EnjcgeRM7-3j8j8tFEWIGL-bRM3lVq8wlGWvBV3uDuI,3677
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tomwer/app/slicestack.py,sha256=YIH4bcOuFri_dHc2EkvYeBL_xv5N9rS8TwLFHaYsYV4,2428
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tomwer/app/stopdatalistener.py,sha256=p5G6sP2DUXEREZzFf0QGowU9C7hX7nexWZHmC0bTIM4,957
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tomwer/app/zstitching.py,sha256=
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tomwer/app/zstitching.py,sha256=wKwJbLA_ZJ6NUDLmeramEYszUXtAw9gFTZKBRqTAYZQ,12817
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tomwer/app/canvas_launcher/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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tomwer/app/canvas_launcher/config.py,sha256=vGvyskE-mOLV4PPUverFhx7lQbGuE6E9747ctGcLodY,7164
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tomwer/app/canvas_launcher/environ.py,sha256=t_sgLAugHUA8d9SR6CZ6HfUHmAjS7ZcSf8I5KiwRayA,2501
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@@ -257,7 +257,7 @@ tomwer/core/settings.py,sha256=9WUpakWAbnAkgPP2s71oaObK34FIq928ZQvrFkya404,5358
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tomwer/core/signal.py,sha256=I5TUcyeBZzrEh1SFGs-ylJSL1aBs41ZFb3IJo3O_55c,6115
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tomwer/core/tomwer_object.py,sha256=Io2UH9y28_2QjMkkHk0shQ9x15gZ_5xETgLDIqw94vc,1745
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tomwer/core/cluster/__init__.py,sha256=vak-tOR_fqqnNqZ8xw2ecos-HAgKpZBbC7yk4JUjDKk,60
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tomwer/core/cluster/cluster.py,sha256=
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tomwer/core/cluster/cluster.py,sha256=1LCZBUJKPUISGgP_O6Ukuzze72Z__KQkLVeyzQAx3wI,5473
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tomwer/core/log/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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tomwer/core/log/logger.py,sha256=KDHLUbaVx3hOuIk8WmzS61x1IkYgAZJ97nVYUI5-PTU,4099
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tomwer/core/log/processlog.py,sha256=0XmoKVUpHjxvaOFEi56eqF1edHPzCfsCmjdMMZP2sxs,3697
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@@ -284,7 +284,7 @@ tomwer/core/process/control/tomoobjserie.py,sha256=L--pjgc0P-2wCul9KERwT4jeq45Rk
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tomwer/core/process/control/volumeselector.py,sha256=0uv1Q8k5Ms1h_iU-ldhb-Y35xsy1kHwQrbUQguV5M_A,370
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tomwer/core/process/control/volumesymlink.py,sha256=lcHS5eJv5lr72BAXrTe0QfwQw8amXIu0lPRsPdL6o_o,7626
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tomwer/core/process/control/datalistener/__init__.py,sha256=gSEeJEDX8E-8HzY7tmPc32QKfqSZHG4Ad06IxDrzOWo,52
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tomwer/core/process/control/datalistener/datalistener.py,sha256=
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tomwer/core/process/control/datalistener/datalistener.py,sha256=jJALoA6YEhxVokiST9Aoc68ex6wuKObZBUis3VmO2eM,22157
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tomwer/core/process/control/datalistener/rpcserver.py,sha256=BAIpBqovcxr5R-F144uvAYYUVgqSiXeDRYuw-ZeVgF8,11104
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tomwer/core/process/control/datawatcher/__init__.py,sha256=F9d_bGOr5iAPEfnKaf5XOEwQSR1wZp_wkzcDYNSuin4,50
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tomwer/core/process/control/datawatcher/datawatcher.py,sha256=oU0nBmn_-cv_f8r-dTQM4I8QT5XPxLuQ6s4yLkf_PEk,16822
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@@ -331,7 +331,7 @@ tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=z7nyfXhMrp0Q3hAN3NY
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tomwer/core/process/reconstruction/nabu/plane.py,sha256=Cgzth77M0pFgLDULmvmPj4bqFm5MvIMJ7Ien8mRqLsE,134
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tomwer/core/process/reconstruction/nabu/settings.py,sha256=JpHKf0smiXeWC8i9Mj7h3g67teJ3Gqycd-Uwg2yzGOQ,2279
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tomwer/core/process/reconstruction/nabu/target.py,sha256=_Z4gViprjR3Vm4KASqsASStLA9GM1wTyoi3Pg0PUSeg,1481
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tomwer/core/process/reconstruction/nabu/utils.py,sha256=
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tomwer/core/process/reconstruction/nabu/utils.py,sha256=mrIrukLAjnC5S2wM9uz5bHdpZwPDKg5BGAjoK_Bu9_Y,18433
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tomwer/core/process/reconstruction/normalization/__init__.py,sha256=TDtATpMVFkEOT93wLXLpW0A_TOeiQDiM7AWAqX4FIB0,119
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tomwer/core/process/reconstruction/normalization/normalization.py,sha256=G-eAZIct47RvzvHNMbKsG4Dt58vTSKhvH-NnIMzxzOs,13210
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tomwer/core/process/reconstruction/normalization/params.py,sha256=porWC6G5lQWF-4JB03B56uGmuMxjx3u0ZMums-Bh2p8,4790
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@@ -412,7 +412,7 @@ tomwer/core/utils/logconfig.py,sha256=xlMqmecIAfnvs4-xFTvbtmZZ_FrX1fY39jq8NC0Km3
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tomwer/core/utils/normalization.py,sha256=szgQT_LuYiU7yDQ19wOjIGKcjnz_HqQdOQJKHkaugAY,2900
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tomwer/core/utils/nxtomoutils.py,sha256=S4MwQAOhcKPbNaWhTewoA_OxsY9EcrpdDAy6BW84gQM,2685
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tomwer/core/utils/resource.py,sha256=aJ5TDJpS9DthtwUiIbsBHU6ii-Odlnl_w2dUQ3DUkyI,1932
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tomwer/core/utils/scanutils.py,sha256=
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+
tomwer/core/utils/scanutils.py,sha256=C2SBcXjT0SwLzc9d-lZWuAp44SuLRnUBLCm8oODrHqU,15720
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tomwer/core/utils/slurm.py,sha256=ven6uAHywHo4G5vjqGNRVljkH-LBJwFDPz5pBAXFK1U,1923
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417
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tomwer/core/utils/spec.py,sha256=QwtoyYkhi89t5IhrR-gbQ-Po5JByyD2HxOBMgdXwFUg,7560
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tomwer/core/utils/threads.py,sha256=_JO6WEbdJo74ZhrFpojM2pVgDmenejump7a568fFu2E,3189
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@@ -437,10 +437,10 @@ tomwer/gui/settings.py,sha256=2Uy0itj8Dg-Owtay852l_oSCop2CQBFqIU11iVj2-nE,244
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tomwer/gui/stackplot.py,sha256=Bz-6Taen3RKAa6FYKeZ81M27r9hahbjAr7Cnx0TsPhE,25517
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tomwer/gui/stacks.py,sha256=iyMDSmVRn4u1Nf7mqIcmYJEVw86GReEK4zepB6DKTmk,8650
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439
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tomwer/gui/cluster/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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440
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-
tomwer/gui/cluster/slurm.py,sha256=
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440
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+
tomwer/gui/cluster/slurm.py,sha256=gjWj2PuyuWoRefCdOGy5tkt7gljEFyscK8ZXvsLaigo,26878
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tomwer/gui/cluster/supervisor.py,sha256=afsXoPocymwhKABam1U2o8LshtVuTMdKaJXBWQAhVNY,17117
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442
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tomwer/gui/cluster/test/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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443
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-
tomwer/gui/cluster/test/test_cluster.py,sha256=
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443
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+
tomwer/gui/cluster/test/test_cluster.py,sha256=x-DJQDyo8OW_JghDrRieALyVjhpYcpyZmTOs2z9ibQ8,3901
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444
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tomwer/gui/cluster/test/test_supervisor.py,sha256=0y24z3sAmc4_WMi-30XZGHgnM7ZqWoXRbu4KlTcZfQw,3212
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tomwer/gui/conditions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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tomwer/gui/conditions/filter.py,sha256=8oKv3zCTzdwjqSjiplXkKkRRKn70vpfgpZRWMwIJ19Q,5549
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@@ -770,16 +770,16 @@ tomwer/synctools/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
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770
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tomwer/synctools/utils/scanstages.py,sha256=GaglgWjtlgTOtEH8F1tU_8EOP-dDsVWmtUt5sZ0FvUs,9263
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771
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tomwer/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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772
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tomwer/tests/conftest.py,sha256=0XlKfOrVtPg8VmyQn4BoK_mzcliFUtacDGLlZ5wD_PM,1912
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773
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-
tomwer/tests/datasets.py,sha256=
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773
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+
tomwer/tests/datasets.py,sha256=49zmGibP1hUaejrjJYdBljqiUrYtqG1EBCvn9Fzzev0,419
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774
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tomwer/tests/test_scripts.py,sha256=LAVRe9PLj-8I-9upzd4QTXhktIpuaCFmVyw_e_Lhwrk,5117
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775
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tomwer/tests/test_utils.py,sha256=D0rNDSK6csEOYBY_7gD-4A3jp8rYAm8L1_Xg34A9I2s,305
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776
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tomwer/tests/utils.py,sha256=RAXx5A99WD4Vyuv_wjHBdr-Xu7UiThHRKw2eiB5GX10,107
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777
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tomwer/third_part/WaitingOverlay.py,sha256=GnqiytcJDp_24Cmz_2nZAP5HfpL3Yh7AzR2ATIusGsg,3906
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778
778
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tomwer/third_part/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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779
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-
tomwer-1.3.
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780
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tomwer-1.3.
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781
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tomwer-1.3.
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tomwer-1.3.
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tomwer-1.3.
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784
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tomwer-1.3.
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785
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tomwer-1.3.
|
779
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+
tomwer-1.3.25.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
|
780
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+
tomwer-1.3.25.dist-info/METADATA,sha256=uWH80kDdxy7VDmh-59uJWZNmr64EXWEIFpxymag6Kmk,10723
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781
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+
tomwer-1.3.25.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
|
782
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+
tomwer-1.3.25.dist-info/entry_points.txt,sha256=fIcDnCxjgwzfIylLYhUsFyiNZjZMxsfRQBxi4f-cJg8,440
|
783
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+
tomwer-1.3.25.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
|
784
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+
tomwer-1.3.25.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
|
785
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+
tomwer-1.3.25.dist-info/RECORD,,
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File without changes
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File without changes
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File without changes
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