tomwer 1.2.8__py3-none-any.whl → 1.3.0a0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/tutorials/icat_publication.ows +58 -0
- orangecontrib/tomwer/widgets/__init__.py +1 -0
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +2 -2
- orangecontrib/tomwer/widgets/control/DataListOW.py +9 -7
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +21 -10
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +11 -5
- orangecontrib/tomwer/widgets/control/EmailOW.py +4 -4
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +31 -18
- orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +14 -7
- orangecontrib/tomwer/widgets/control/NotifierOW.py +1 -0
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +7 -4
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +182 -182
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +4 -4
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +4 -4
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +3 -3
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +2 -0
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +3 -3
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +3 -3
- orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +115 -0
- orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +98 -0
- orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +129 -0
- orangecontrib/tomwer/widgets/icat/__init__.py +13 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +82 -0
- orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.svg +95 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +143 -0
- orangecontrib/tomwer/widgets/icons/tomwer_data_portal.png +0 -0
- orangecontrib/tomwer/widgets/icons/tomwer_data_portal.svg +76 -0
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +9 -8
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +3 -3
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +179 -169
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +23 -0
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +39 -5
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +7 -13
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +7 -17
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +3 -4
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +1 -1
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +3 -3
- orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py +3 -29
- tomwer/__main__.py +11 -58
- tomwer/app/canvas.py +8 -0
- tomwer/app/canvas_launcher/config.py +13 -11
- tomwer/app/darkref.py +1 -1
- tomwer/app/darkrefpatch.py +1 -1
- tomwer/app/imagekeyeditor.py +5 -5
- tomwer/app/imagekeyupgrader.py +5 -5
- tomwer/app/intensitynormalization.py +2 -2
- tomwer/app/radiostack.py +2 -2
- tomwer/app/zstitching.py +74 -3
- tomwer/core/cluster/cluster.py +26 -0
- tomwer/core/log/logger.py +7 -5
- tomwer/core/process/conditions/filters.py +1 -1
- tomwer/core/process/control/datalistener/datalistener.py +3 -3
- tomwer/core/process/control/nxtomoconcatenate.py +13 -13
- tomwer/core/process/control/nxtomomill.py +83 -25
- tomwer/core/process/control/scantransfer.py +11 -10
- tomwer/core/process/control/scanvalidator.py +3 -2
- tomwer/core/process/control/test/test_concatenate_nxtomos.py +9 -9
- tomwer/core/process/control/test/test_email.py +4 -4
- tomwer/core/process/control/test/test_h52nx_process.py +59 -7
- tomwer/core/process/control/test/test_volume_link.py +64 -64
- tomwer/core/process/control/timer.py +1 -1
- tomwer/core/process/control/volumesymlink.py +200 -200
- tomwer/core/process/edit/darkflatpatch.py +6 -6
- tomwer/core/process/edit/imagekeyeditor.py +17 -18
- tomwer/core/process/icat/__init__.py +0 -0
- tomwer/core/process/icat/createscreenshots.py +100 -0
- tomwer/core/process/icat/gallery.py +377 -0
- tomwer/core/process/icat/icatbase.py +36 -0
- tomwer/core/process/icat/publish.py +228 -0
- tomwer/core/process/icat/screenshots.py +26 -0
- tomwer/core/process/output.py +52 -0
- tomwer/core/process/reconstruction/axis/axis.py +17 -10
- tomwer/core/process/reconstruction/axis/mode.py +4 -0
- tomwer/core/process/reconstruction/axis/params.py +9 -4
- tomwer/core/process/reconstruction/darkref/darkrefs.py +8 -6
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +1 -1
- tomwer/core/process/reconstruction/darkref/params.py +1 -1
- tomwer/core/process/reconstruction/lamino/tofu.py +4 -4
- tomwer/core/process/reconstruction/nabu/castvolume.py +1 -1
- tomwer/core/process/reconstruction/nabu/helical.py +9 -5
- tomwer/core/process/reconstruction/nabu/nabucommon.py +32 -62
- tomwer/core/process/reconstruction/nabu/nabuscores.py +387 -61
- tomwer/core/process/reconstruction/nabu/nabuslices.py +33 -21
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +37 -14
- tomwer/core/process/reconstruction/nabu/settings.py +2 -2
- tomwer/core/process/reconstruction/nabu/utils.py +129 -24
- tomwer/core/process/reconstruction/output.py +108 -0
- tomwer/core/process/reconstruction/saaxis/saaxis.py +233 -263
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +140 -86
- tomwer/core/process/reconstruction/scores/params.py +4 -1
- tomwer/core/process/reconstruction/scores/scores.py +13 -0
- tomwer/core/process/reconstruction/test/test_axis_params.py +2 -2
- tomwer/core/process/reconstruction/test/test_darkref.py +3 -3
- tomwer/core/process/reconstruction/test/test_darkref_copy.py +3 -3
- tomwer/core/process/reconstruction/test/test_saaxis.py +3 -4
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +2 -2
- tomwer/core/process/stitching/nabustitcher.py +2 -2
- tomwer/core/process/test/test_axis.py +6 -6
- tomwer/core/process/test/test_dark_and_flat.py +10 -7
- tomwer/core/process/test/test_data_transfer.py +7 -6
- tomwer/core/process/test/test_nabu.py +4 -4
- tomwer/core/process/test/test_normalization.py +2 -2
- tomwer/core/scan/edfscan.py +4 -1
- tomwer/core/scan/hdf5scan.py +19 -500
- tomwer/core/scan/nxtomoscan.py +532 -0
- tomwer/core/scan/scanbase.py +42 -20
- tomwer/core/scan/scanfactory.py +13 -13
- tomwer/core/scan/test/test_future_scan.py +2 -2
- tomwer/core/scan/test/test_h5.py +12 -10
- tomwer/core/scan/test/test_process_registration.py +2 -2
- tomwer/core/scan/test/test_scan.py +4 -3
- tomwer/core/settings.py +20 -0
- tomwer/core/test/test_scanutils.py +8 -7
- tomwer/core/test/test_utils.py +33 -26
- tomwer/core/utils/__init__.py +0 -466
- tomwer/core/utils/deprecation.py +1 -1
- tomwer/core/utils/dictutils.py +14 -0
- tomwer/core/utils/lbsram.py +35 -0
- tomwer/core/utils/nxtomoutils.py +1 -1
- tomwer/core/utils/scanutils.py +6 -6
- tomwer/core/utils/spec.py +263 -0
- tomwer/core/volume/volumefactory.py +2 -2
- tomwer/gui/cluster/slurm.py +260 -60
- tomwer/gui/cluster/test/test_cluster.py +13 -0
- tomwer/gui/cluster/test/test_supervisor.py +2 -2
- tomwer/gui/configuration/__init__.py +0 -0
- tomwer/gui/{reconstruction/nabu → configuration}/action.py +1 -32
- tomwer/gui/configuration/level.py +22 -0
- tomwer/gui/control/actions.py +54 -0
- tomwer/gui/control/datalist.py +78 -16
- tomwer/gui/control/datalistener.py +4 -16
- tomwer/gui/control/{email.py → emailnotifier.py} +9 -18
- tomwer/gui/control/history.py +2 -2
- tomwer/gui/control/observations.py +2 -2
- tomwer/gui/control/reducedarkflatselector.py +1 -1
- tomwer/gui/control/selectorwidgetbase.py +36 -9
- tomwer/gui/control/serie/seriecreator.py +5 -22
- tomwer/gui/control/test/test_email.py +1 -1
- tomwer/gui/control/test/test_scanvalidator.py +6 -5
- tomwer/gui/control/test/test_single_tomo_obj.py +2 -2
- tomwer/gui/control/tomoobjdisplaymode.py +8 -0
- tomwer/gui/debugtools/datasetgenerator.py +3 -3
- tomwer/gui/edit/dkrfpatch.py +16 -22
- tomwer/gui/edit/imagekeyeditor.py +8 -11
- tomwer/gui/edit/nxtomoeditor.py +111 -44
- tomwer/gui/edit/nxtomowarmer.py +4 -4
- tomwer/gui/edit/test/test_dkrf_patch.py +7 -7
- tomwer/gui/edit/test/test_image_key_editor.py +3 -3
- tomwer/gui/edit/test/test_nx_editor.py +40 -16
- tomwer/gui/icat/__init__.py +0 -0
- tomwer/gui/icat/createscreenshots.py +80 -0
- tomwer/gui/icat/gallery.py +214 -0
- tomwer/gui/icat/publish.py +187 -0
- tomwer/gui/reconstruction/axis/axis.py +171 -57
- tomwer/gui/reconstruction/axis/radioaxis.py +80 -95
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +3 -2
- tomwer/gui/reconstruction/lamino/tofu/projections.py +1 -1
- tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py +3 -6
- tomwer/gui/reconstruction/nabu/castvolume.py +1 -1
- tomwer/gui/reconstruction/nabu/check.py +9 -9
- tomwer/gui/reconstruction/nabu/helical.py +29 -12
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +2 -4
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +110 -33
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +9 -12
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +219 -29
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +3 -6
- tomwer/gui/reconstruction/nabu/nabuflow.py +12 -20
- tomwer/gui/reconstruction/nabu/slices.py +6 -7
- tomwer/gui/reconstruction/nabu/volume.py +22 -10
- tomwer/gui/reconstruction/normalization/intensity.py +15 -23
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +7 -23
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +1 -1
- tomwer/gui/reconstruction/saaxis/saaxis.py +7 -9
- tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +2 -1
- tomwer/gui/reconstruction/scores/control.py +2 -9
- tomwer/gui/reconstruction/scores/scoreplot.py +11 -5
- tomwer/gui/reconstruction/test/test_axis.py +23 -12
- tomwer/gui/reconstruction/test/test_lamino.py +8 -3
- tomwer/gui/reconstruction/test/test_nabu.py +28 -9
- tomwer/gui/reconstruction/test/test_saaxis.py +3 -3
- tomwer/gui/reconstruction/test/test_sadeltabeta.py +2 -2
- tomwer/gui/settings.py +5 -28
- tomwer/gui/stackplot.py +2 -5
- tomwer/gui/stitching/action.py +49 -0
- tomwer/gui/stitching/config/axisparams.py +7 -24
- tomwer/gui/stitching/config/output.py +10 -8
- tomwer/gui/stitching/config/positionoveraxis.py +22 -23
- tomwer/gui/stitching/normalization.py +117 -0
- tomwer/gui/stitching/stitchandbackground.py +4 -6
- tomwer/gui/stitching/stitching.py +265 -43
- tomwer/gui/stitching/stitching_preview.py +62 -5
- tomwer/gui/stitching/stitching_raw.py +2 -5
- tomwer/gui/stitching/z_stitching/fineestimation.py +0 -60
- tomwer/gui/utils/buttons.py +112 -29
- tomwer/gui/utils/inputwidget.py +33 -25
- tomwer/gui/utils/scandescription.py +4 -0
- tomwer/gui/utils/step.py +144 -0
- tomwer/gui/utils/unitsystem.py +2 -5
- tomwer/gui/utils/vignettes.py +176 -15
- tomwer/gui/visualization/dataviewer.py +1 -18
- tomwer/gui/visualization/diffviewer/diffviewer.py +7 -16
- tomwer/gui/visualization/diffviewer/shiftwidget.py +2 -5
- tomwer/gui/visualization/scanoverview.py +1 -1
- tomwer/gui/visualization/sinogramviewer.py +1 -10
- tomwer/gui/visualization/test/test_diffviewer.py +3 -3
- tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +4 -4
- tomwer/gui/visualization/test/test_sinogramviewer.py +2 -2
- tomwer/gui/visualization/test/test_stacks.py +3 -3
- tomwer/gui/visualization/test/test_volumeviewer.py +2 -2
- tomwer/io/utils/raw_and_processed_data.py +84 -0
- tomwer/io/utils/tomoobj.py +4 -6
- tomwer/resources/gui/icons/ruler.png +0 -0
- tomwer/resources/gui/icons/ruler.svg +273 -0
- tomwer/resources/gui/icons/short_description.png +0 -0
- tomwer/resources/gui/icons/short_description.svg +58 -0
- tomwer/resources/gui/icons/url.png +0 -0
- tomwer/resources/gui/icons/url.svg +58 -0
- tomwer/synctools/stacks/edit/darkflatpatch.py +2 -2
- tomwer/synctools/stacks/edit/imagekeyeditor.py +2 -2
- tomwer/synctools/stacks/reconstruction/axis.py +4 -4
- tomwer/synctools/stacks/reconstruction/castvolume.py +2 -2
- tomwer/synctools/stacks/reconstruction/dkrefcopy.py +4 -10
- tomwer/synctools/stacks/reconstruction/nabu.py +2 -2
- tomwer/synctools/stacks/reconstruction/normalization.py +2 -2
- tomwer/synctools/stacks/reconstruction/saaxis.py +2 -2
- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -2
- tomwer/synctools/test/test_darkRefs.py +7 -58
- tomwer/synctools/test/test_foldertransfer.py +6 -6
- tomwer/synctools/utils/scanstages.py +6 -6
- tomwer/tests/conftest.py +34 -0
- tomwer/tests/datasets.py +13 -0
- tomwer/tests/test_scripts.py +92 -39
- tomwer/tests/utils.py +5 -0
- tomwer/version.py +3 -3
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/METADATA +39 -44
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/RECORD +248 -209
- tomwer/resources/gui/icons/esrf_1.svg +0 -307
- tomwer/resources/gui/icons/triangle.svg +0 -80
- tomwer/synctools/test/test_scanstages.py +0 -162
- tomwer/tests/utils/__init__.py +0 -247
- tomwer/tests/utils/utilstest.py +0 -220
- /tomwer/app/{saaxis.py → multicor.py} +0 -0
- /tomwer/app/{sadeltabeta.py → multipag.py} +0 -0
- /tomwer/core/process/control/{email.py → emailnotifier.py} +0 -0
- /tomwer-1.2.8-py3.11-nspkg.pth → /tomwer-1.3.0a0-py3.11-nspkg.pth +0 -0
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/LICENSE +0 -0
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/WHEEL +0 -0
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/entry_points.txt +0 -0
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/namespace_packages.txt +0 -0
- {tomwer-1.2.8.dist-info → tomwer-1.3.0a0.dist-info}/top_level.txt +0 -0
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Name: tomwer
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Summary: "tomography workflow tools"
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Home-page: https://gitlab.esrf.fr/tomotools/tomwer
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tomwer
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======
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