tomwer 1.2.0a2__py3-none-any.whl → 1.2.0a4__py3-none-any.whl

{tomwer-1.2.0a2.dist-info → tomwer-1.2.0a4.dist-info}/RECORD

@@ -1,4 +1,4 @@
-tomwer-1.2.0a2-py3.11-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
+tomwer-1.2.0a4-py3.11-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
 orangecontrib/tomwer/__init__.py,sha256=B4DXy1gY_wXmNYa2aOfapmJb2mEuCAjoaNEGnpBs70g,148
 orangecontrib/tomwer/state_summary.py,sha256=5_dPzweL3r0ye4ZfJo6IV2ThJI8fQhWoO2ySdJJajj8,1711
 orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -42,7 +42,7 @@ orangecontrib/tomwer/widgets/control/NXTomomillOW.py,sha256=M41e4w2dn4U4690EpsT5
 orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py,sha256=9jf0Qs8jb73hPeLukmulpGRLRRm3rcdHIeks82EwaKA,5998
 orangecontrib/tomwer/widgets/control/NotifierOW.py,sha256=k_SOG-L7EVwKtAb22aSpkpcdeHFDLFRixEcapQh9NxE,4207
 orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py,sha256=llc0e2Y8nMtXDQ56WXZoIdvjRwqcwU64yPVRnuyIOxY,2836
-orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py,sha256=qXsvoxpU7ZO2GtKCiPVHxAtCf6FDJJbfHe5L7UWq_ak,7086
+orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py,sha256=tQibP4N46T9OUNsm5BsTJQd3v3uZ6d0WMnDJFRHT8yA,6786
 orangecontrib/tomwer/widgets/control/TimerOW.py,sha256=H-MWEgXXjmSa_9ExPEJr3OhRCHuT8rAAZcb0JWfoB-o,4395
 orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py,sha256=pVU6M8CUdmO6T8Ib3EnLi1RcsQeXivc_wBbMOP9M2tY,3203
 orangecontrib/tomwer/widgets/control/VolumeSelector.py,sha256=nnqGw8oYaUnTglTrHoCorvqJ_sT_DmK2knazsEVY51k,5081
@@ -138,8 +138,8 @@ orangecontrib/tomwer/widgets/other/icons/hub.png,sha256=wnKSaxw2WnBkSQjI86aLZfdm
 orangecontrib/tomwer/widgets/other/icons/hub.svg,sha256=9EYoBKY-P-cO17nM48OPA9VDZSCbyGtrMRc80BGHflk,3735
 orangecontrib/tomwer/widgets/reconstruction/AxisOW.py,sha256=jZtGIbbbTIaAyLfJWijBrEQkBvo7whOXxWcBqtjxoVM,22218
 orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py,sha256=bGKijEHkZu9x14nwjuMnUInVA0zzhVg-p6PltgTDf-w,9047
-orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py,sha256=lGpP_w7gWD7eqoxFsrNmwpEBcXxxNo0tJFA-aK0W4Iw,10788
-orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py,sha256=6IARMuo_V4nHECu18955_aCFLfAMuku9a2OK_kuGD-k,5408
+orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py,sha256=DyjkZ3RDgUvEkK3yR8qCWQq9eaVus8I-64nvhrHN1ZQ,10988
+orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py,sha256=V8n4V-UYVTMFst59iXk6OzTUVH6B5mdhRDEflQourrs,5688
 orangecontrib/tomwer/widgets/reconstruction/NabuOW.py,sha256=D_0DjYYLKi-Avry_PUM_0A7UayZSw0CKKhwFvKD76O8,11865
 orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py,sha256=Updr8SolE-5_5MYtbNE7u3x_0XBm7pVFQSG0Iwyis_w,17925
 orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py,sha256=MSDaxFTX1VUvIEVl0GhY8Iflgxl2oKSrUUFhdtRqpKY,18723
@@ -211,19 +211,19 @@ orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px
 tomwer/__init__.py,sha256=82Jp1abyG4UWdGuT4nNU7LxaUV6xxkOte5pIz3w69Do,1745
 tomwer/__main__.py,sha256=jkdSlsmo3fEdkyV5yDRi1IyvQbyAWlXNm5B_G97Dr58,10290
 tomwer/utils.py,sha256=EgVwJ5CQVjoBvcKNwyVoXv_P4ciI11oxb8fNyy82Lck,8465
-tomwer/version.py,sha256=1S-JDYYLsua30ESCSJumhYvRwqqXdhu_CwN0tvMTq8I,4386
+tomwer/version.py,sha256=7RuqY3vyNsEJZB6MimCiGIApoN22hNhPM4iTMD0xvzk,4386
 tomwer/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/axis.py,sha256=UQNxYpHzxnGdNpkV6sJoO_0tPGCxJkylghwbA7ENsM0,5948
 tomwer/app/canvas.py,sha256=Px0oWLny53xe-2OXnepfRH5ZIcuO_e7wSYmE0femhjg,1379
 tomwer/app/darkref.py,sha256=R_EMV9fAa0ixvdewItmw6c6n7a6QSx7IGDWsfVbgf_k,269
 tomwer/app/darkrefpatch.py,sha256=bI76FUXw5buNzJ3ryM3WwpviwTurAZ2coracPv7lDW8,278
 tomwer/app/diffframe.py,sha256=QYFPh4ZrcXayzBgsounw-5bOW92OqLLRnyUGqK3ETo8,3110
-tomwer/app/imagekeyeditor.py,sha256=cxLSx7ECaQDHc62LBRSQL3OoetXtJQNs2FHIbQiMOL4,2789
-tomwer/app/imagekeyupgrader.py,sha256=OaUBhzn_xWfNntnNHIjE8kCokjRVIIdaynrq0wGj8CU,3184
+tomwer/app/imagekeyeditor.py,sha256=c4TH9nVn_ELUUeeiCz8nOXLhEpqWZ9zRTMsBofhUsZw,2829
+tomwer/app/imagekeyupgrader.py,sha256=bPxH_oyQK6il9ePhAJTokcAkxDmLJG8R1hhI9tgZizw,3225
 tomwer/app/intensitynormalization.py,sha256=bk2Hxg0JLYkzZHEk_qqEzztXWtAiHd1asKNd-jrhnFk,6567
 tomwer/app/lamino.py,sha256=8orl9GkKQb4yyVqAoLLe7GsEVmJeelNUWxAaf1n4J2s,4809
 tomwer/app/nabuapp.py,sha256=6ytKx88wOYX_Cs6Vl_m7poL7z5gpb4s6iJod4ikaCH4,8027
-tomwer/app/nxtomoeditor.py,sha256=rbijDaFU72KZ1Wsv7NMrJzicovi4dnx6oYE_S_Iw8tU,2796
+tomwer/app/nxtomoeditor.py,sha256=BabQ8lSBzMqZLyoKN8k2ubDj6dxYApp_Ipi1SjSN1So,2837
 tomwer/app/patchrawdarkflat.py,sha256=HsWKKyFpUwO2Pig06nMYWa9RYXeUzdkE2MQeIkhCRl4,3827
 tomwer/app/radiostack.py,sha256=Weh8Yvq69bQgBYs9nXrHY_yp_yM_flbiWMi4E5f5CJs,2531
 tomwer/app/reducedarkflat.py,sha256=QK_RAszzNDHCOTgqi28DydmnUnAPBRJHnONUF_Hy0lU,6520
@@ -235,11 +235,11 @@ tomwer/app/scanviewer.py,sha256=0HI7uV7zRiK-2MyLlAE6vCMdgmiFfMbsF33CNoxKlLw,2646
 tomwer/app/sinogramviewer.py,sha256=9V5o2OiHOyYxiWOdjZjjQuC8hRdrsOQCbpQ0QYPfSbc,3620
 tomwer/app/slicestack.py,sha256=OpvgRgXj62ThovS1wAaCTFoneJkIOwRT5BMV75hEf2M,2371
 tomwer/app/stopdatalistener.py,sha256=p5G6sP2DUXEREZzFf0QGowU9C7hX7nexWZHmC0bTIM4,957
-tomwer/app/zstitching.py,sha256=8zJ0scR8bRgYquNODRU0AMQLEPVjhmikbAWmRthC188,9446
+tomwer/app/zstitching.py,sha256=9qmMx5YaiJ1fSjD1Yz31UKEcEJLuQSyWRGz_tEaOVk0,9486
 tomwer/app/canvas_launcher/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/canvas_launcher/config.py,sha256=D4qyh_3ynl7o1P2f8mhAefhNnraaLpVi1v4vDYaA2Yo,7249
 tomwer/app/canvas_launcher/environ.py,sha256=tHIlYXcFWinNLTV7dL2iBOWCp9oe9iouibU9NlzFbCk,2500
-tomwer/app/canvas_launcher/mainwindow.py,sha256=bidGGsB14rquKnE104NdiPvtGnvvm7E1GxCPQ4BpbGk,18268
+tomwer/app/canvas_launcher/mainwindow.py,sha256=r_zw7tZ1rMOZczBOTn7lgnyqPFqEUckdgePIqgCSm_c,18184
 tomwer/app/canvas_launcher/splash.py,sha256=2z3q5QwoQ_ad-a2UI0R8hR3252MWG7DggXPOgDZfgBA,560
 tomwer/app/canvas_launcher/widgetsscheme.py,sha256=S4x1LO798fOxL3-g2WDuAh0T2Y_Kbg79DbH3siwKPiM,2859
 tomwer/core/__init__.py,sha256=lLfviCLw9VdT6SQ_9eYhqFe8QtUA-Dv-JDGpgxQ8Yzs,1373
@@ -310,13 +310,13 @@ tomwer/core/process/reconstruction/lamino/tofu.py,sha256=53_n2xcHiF3InqUf0ZnnyIn
 tomwer/core/process/reconstruction/nabu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/core/process/reconstruction/nabu/castvolume.py,sha256=g2NuI78KFIWy2iZmg4iJkUlqE2b2Ji4LPXKytcyGnXY,10246
 tomwer/core/process/reconstruction/nabu/helical.py,sha256=rWp7DP-Uphrxhm4ztK1RwTNhnDFj0H3FTz37zuip7vU,1749
-tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=GKLEJjtxc-7uxlw84qIXKZQ86j9Sjwbi64l3RMLRonQ,22795
-tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=PvCdk87vmjM79Nz-aXKbZGcrzDfpxZsTg4wGL2gREzc,12752
-tomwer/core/process/reconstruction/nabu/nabuslices.py,sha256=jI-Q3k0qhBTIW3P7HSgiWZu9AewclUUfUiwfJ7MRwQU,36356
-tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=DIBEymVgNCQUTlAgh4LqfBmMoCw1ZZsr4mOVQxEERV4,20627
+tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=J9FaOe9tX_EL9oNid1BDt16YFiYUWc6ZD24SMg1LV7c,24543
+tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=8ZGomiSz7yUncap9hXRhmwXG2-TBlnUf5Umav8CvdkQ,12825
+tomwer/core/process/reconstruction/nabu/nabuslices.py,sha256=tKRkJRmazD8ogYw7_zKdfMmyU40DR6vBGbaozjiUiAA,36278
+tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=AKJEuuazHtsbCmOABoLkINd14arF8K5Z6zPB8OKT1l4,20688
 tomwer/core/process/reconstruction/nabu/settings.py,sha256=bH5bW88tikwGQXIBNVznefXNldlClhKk-LhhU3qOcO0,2264
 tomwer/core/process/reconstruction/nabu/target.py,sha256=_Z4gViprjR3Vm4KASqsASStLA9GM1wTyoi3Pg0PUSeg,1481
-tomwer/core/process/reconstruction/nabu/utils.py,sha256=WFNVrgOeBncgiNB7pbeNZyncbBolLit5k78qM3c-nUM,14011
+tomwer/core/process/reconstruction/nabu/utils.py,sha256=G6wfaQn8_9h_AX9MUCnY-OTSLuA8L7bzymUyCO5_IlM,12956
 tomwer/core/process/reconstruction/normalization/__init__.py,sha256=TDtATpMVFkEOT93wLXLpW0A_TOeiQDiM7AWAqX4FIB0,119
 tomwer/core/process/reconstruction/normalization/normalization.py,sha256=G-eAZIct47RvzvHNMbKsG4Dt58vTSKhvH-NnIMzxzOs,13210
 tomwer/core/process/reconstruction/normalization/params.py,sha256=porWC6G5lQWF-4JB03B56uGmuMxjx3u0ZMums-Bh2p8,4790
@@ -352,7 +352,7 @@ tomwer/core/process/test/test_data_listener.py,sha256=ab_FZM7f-lXzQ6eMY-4aCFyTUq
 tomwer/core/process/test/test_data_transfer.py,sha256=q6NBX2keRfjwI1-8zth01zFZqNTECkNN8XzuEHNq94Y,15387
 tomwer/core/process/test/test_data_watcher.py,sha256=y0FpUqxlpKZu7OhuwlxeLPX5ESPXj_2m2lKjEWrVCV4,3138
 tomwer/core/process/test/test_lamino.py,sha256=MPMzmXbrqRX2hbt-RT3XM6qpCU7s4E0mAYK7GdroWfM,3009
-tomwer/core/process/test/test_nabu.py,sha256=9fThzBWgs5O6fCbgumaHOVp_HEeUe0sqcH1QgRZ-SJ4,19273
+tomwer/core/process/test/test_nabu.py,sha256=OrZcTPV8oOzb1x7845ha4JAHMNZzNqVVxi_GzZ4Cjds,19279
 tomwer/core/process/test/test_normalization.py,sha256=WPdXga1OYq8WB7xWhYw0owSf0PT20eVcKOPLhfvv1wQ,4008
 tomwer/core/process/test/test_timer.py,sha256=T25A7c81696c7D_sZiAy59b9RX-F6MdvUy-_st-qLVQ,3027
 tomwer/core/process/visualization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -573,12 +573,12 @@ tomwer/gui/visualization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZ
 tomwer/gui/visualization/dataviewer.py,sha256=trHX7R_eMOK9bkHHTMjIOAILMvzOX72IotAsrCyQoOA,26335
 tomwer/gui/visualization/fullscreenplot.py,sha256=ptLrhF8DUsYNMj-KDioe9Y-KxnOzqepGlS8K2A2hjck,3639
 tomwer/gui/visualization/nxtomometadata.py,sha256=uR2bHPnMp66mOJkE9WscTcQaiasr01pt3IbLUPP1F5M,683
-tomwer/gui/visualization/reconstructionparameters.py,sha256=vzHshk136LHw4df09kj5cvoNozUsMpdCOWHxeGpobgs,9785
+tomwer/gui/visualization/reconstructionparameters.py,sha256=19W0uAdkda8kzp9rWj4gbMuG4t16kBc3j6RwM_1hogk,10230
 tomwer/gui/visualization/scanoverview.py,sha256=zX1sKNKFb-HznOTOZqLr6HbmFjzdR35sBVmETBTcxNU,9215
 tomwer/gui/visualization/sinogramviewer.py,sha256=JH_Ws2sJM9uls8rygXw2CMDvVwVG_1O-trtyI7OxAdE,10116
 tomwer/gui/visualization/tomoobjoverview.py,sha256=YzocBQXhgnzI8IsJg5junE7218WcJdvSNH4r6DQgo74,1991
 tomwer/gui/visualization/volumeoverview.py,sha256=6Hv1TtsDlaGQPCJKW-IkGy_r5Buue-O95tl1KkpMD-0,2491
-tomwer/gui/visualization/volumeviewer.py,sha256=12fJ7Hop_plkczEpIZwTNSvgASNdTd7eAUrx2x6yoGw,16502
+tomwer/gui/visualization/volumeviewer.py,sha256=eOFIultoKryz2B3tslG3YFzo945n94zSviEz8vxaapk,16750
 tomwer/gui/visualization/diffviewer/__init__.py,sha256=rZ7qOTfAChU3FouCdkZllXT9ZZqTdo1XhLZMfmOqUAE,39
 tomwer/gui/visualization/diffviewer/diffviewer.py,sha256=XyEd8-wWt-8qf4H1RZPMwQbjpvB7EbOpu00nOL_psmc,22015
 tomwer/gui/visualization/diffviewer/shiftwidget.py,sha256=ZY-P1nEudYXXYqnioTa9dG_gEte_Nf84RlXUKp8rgdE,21029
@@ -623,6 +623,7 @@ tomwer/resources/gui/icons/datalistener_deactivate.png,sha256=vB2zaa8UNPCrrMnTMo
 tomwer/resources/gui/icons/datalistener_deactivate.svg,sha256=W2dXJ1z33pDrcQYW0kVv9W3Bo53kif1pQvejPD0ardQ,3857
 tomwer/resources/gui/icons/delta_beta.png,sha256=gcRqLJ3ybHsGNxj6pWV2Vh3XJwvlrkf6l8W7ap-mo00,1869
 tomwer/resources/gui/icons/delta_beta.svg,sha256=j8vUteCDAbST0MkcwEEXxRC1VsZP_eZsWL6c89E_mCI,2426
+tomwer/resources/gui/icons/esrf_1.svg,sha256=6a4sJBjjAON3zvLumC9xa3g61bVURle8KJqdBh4U3h4,21483
 tomwer/resources/gui/icons/exit.png,sha256=ovcPdlUS1ZLJ5aalNzvOXtrPacpe089f59Z97Sk-WZk,1002
 tomwer/resources/gui/icons/exit.svg,sha256=bDa7822wNHLLQIOyn3cYB8LPo8FdmO0KzWghiydoZrI,10773
 tomwer/resources/gui/icons/full_screen.png,sha256=XaVKDMuUpMBx6Ra07cEYQBqqtrp969zovS_EPVLJHdo,674
@@ -699,6 +700,7 @@ tomwer/resources/gui/icons/stitching_modeRefine.svg,sha256=gsSLWIPgKcwQzZ8Ds2pjQ
 tomwer/resources/gui/icons/switch.png,sha256=OYhfT5uV_tSAfiFOF6ul57cC9Vs6vKgNM8TfFshv9Ic,491
 tomwer/resources/gui/icons/tomwer.png,sha256=C3Pg4DHiFgV6UFedNKvqQWihhZGdsPg8lxa08ve58JQ,24955
 tomwer/resources/gui/icons/tomwer_large.png,sha256=kStquHhlb65WUEojlLUAkWVYfv3Ku2a3AQNrdFZuxBQ,176673
+tomwer/resources/gui/icons/triangle.svg,sha256=iAtFlXpq2TujOMjvN4xi9mEtqGEim061tmDnvwrKCiI,2849
 tomwer/resources/gui/icons/unlocked.png,sha256=zkUuqKlzSi8nxXitwYwdV2_Y0emtDXioKG2jLQ-NrNs,365
 tomwer/resources/gui/icons/unlocked.svg,sha256=T2xH018d4KoCm40w6-ggDbcEq49OrkwGjQ_dQxS-074,2141
 tomwer/resources/gui/icons/unsharp_mask.png,sha256=sM7_Y6jkQlCIaDsw9hNuOnbSbeoFo3_uPz5aFs0fAr4,100796
@@ -773,17 +775,10 @@ tomwer/tests/test_scripts.py,sha256=cAiWjkQtaG3p0nRVaDUY9RNieAb1tC6UT6vsyBkcBsE,
 tomwer/tests/test_utils.py,sha256=D0rNDSK6csEOYBY_7gD-4A3jp8rYAm8L1_Xg34A9I2s,305
 tomwer/tests/utils/__init__.py,sha256=AAO9QsJsqO7uEg7t7fOOdniqaD4Nw6g3gQO-Fb8hXE4,8653
 tomwer/tests/utils/utilstest.py,sha256=mNDjZhyzPatgMH0IwwiaFWUu8UBpzuhP5NLgxo1rrQE,7341
-tomwer/third_party/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/third_party/nabu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/third_party/nabu/utils.py,sha256=mgY5lik4jv_HCMd3wKyjuqeRU_JgevwCoEB5N_HDtLE,5411
-tomwer/third_party/nabu/preproc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/third_party/nabu/preproc/phase.py,sha256=H8rR68wiYSWb1z0OQZESdiaQ1MnCMfe37sNsG4dYsOk,14386
-tomwer/third_party/tango/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/third_party/tango/device.py,sha256=RP1HbQkWQKWpE8GdcxIz-lXvhTfrdhoEKe4OxBDbLtE,220
-tomwer-1.2.0a2.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
-tomwer-1.2.0a2.dist-info/METADATA,sha256=YGQRmkPlCN3g-fFLxSdvGjmgZ2Z5wDUTBQFVJwLpgwc,10865
-tomwer-1.2.0a2.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
-tomwer-1.2.0a2.dist-info/entry_points.txt,sha256=fIcDnCxjgwzfIylLYhUsFyiNZjZMxsfRQBxi4f-cJg8,440
-tomwer-1.2.0a2.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
-tomwer-1.2.0a2.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
-tomwer-1.2.0a2.dist-info/RECORD,,
+tomwer-1.2.0a4.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
+tomwer-1.2.0a4.dist-info/METADATA,sha256=3StXR6mgEch20U40_O-D0AsBWY6uEzigWGvK0p1UMrw,10865
+tomwer-1.2.0a4.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
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+tomwer-1.2.0a4.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
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+tomwer-1.2.0a4.dist-info/RECORD,,

tomwer/third_party/nabu/preproc/phase.py

@@ -1,387 +0,0 @@
-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-import numpy as np
-from math import pi
-from bisect import bisect
-from ..utils import generate_powers
-from silx.utils.enum import Enum as _Enum
-
-
-def lmicron_to_db(Lmicron, energy, distance):
-    """
-    Utility to convert the "Lmicron" parameter of PyHST
-    to a value of delta/beta.
-
-    Parameters
-    ----------
-    Lmicron: float
-        Length in microns, values of the parameter "PAGANIN_Lmicron"
-        in PyHST2 parameter file.
-    energy: float
-        Energy in keV.
-    distance: float
-        Sample-detector distance in microns
-
-    Formula
-    -------
-    The conversion is done using the formula
-
-    $$
-    L^2 = \pi \lambda D \frac{\delta}{\beta}  # noqa W605
-    $$
-    The PyHST2 normalization differs from the one used by other softwares
-    like tomopy by a factor $1/(4\pi^2)$
-    """
-    L2 = Lmicron**2
-    wavelength = 1.23984199e-3 / energy
-    return L2 / (pi * wavelength * distance)
-
-
-class PaddingMode(_Enum):
-    ZEROS = "zeros"
-    MEAN = "mean"
-    EDGE = "edge"
-    SYMMETRIC = "symmetric"
-    REFLECT = "reflect"
-
-
-class PaganinPhaseRetrieval(object):
-    """
-    Paganin Phase Retrieval for an infinitely distant point source.
-    Formula (10) in [1].
-
-    Parameters
-    ----------
-    shape: int or tuple
-        Shape of each radio, in the format (num_rows, num_columns), i.e
-        (size_vertical, size_horizontal).
-        If an integer is provided, the shape is assumed to be square.
-    distance : float, optional
-        Propagation distance in cm.
-    energy : float, optional
-        Energy in keV.
-    delta_beta: float, optional
-        delta/beta ratio, where n = (1 - delta) + i*beta is the complex
-        refractive index of the sample.
-    pixel_size : float, optional
-        Detector pixel size in microns.
-    padding : str, optional
-        Padding method. Available are "zeros", "mean", "edge", "sym",
-        "reflect". Default is "edge".
-        Please refer to the "Padding" section below for more details.
-    margin: tuple, optional
-        The user may provide integers values U, D, L, R as a tuple under the
-        form ((U, D), (L, R)) (same syntax as numpy.pad()).
-        The resulting filtered radio will have a size equal to
-        (size_vertic - U - D, size_horiz - L - R).
-        These values serve to create a "margin" for the filtering process,
-        where U, D, L R are the margin of the Up, Down, Left and Right part,
-        respectively.
-        The filtering is done on a subset of the input radio. The subset
-        size is (Nrows - U - D, Ncols - R - L).
-        The margins is used to do the padding for the rest of the padded
-        array.
-
-        For example in one dimension, where padding="edge":
-
-        <------------------------------ padded_size --------------------------->
-        [padding=edge | padding=data | radio data | padding=data | padding=edge]
-        <------ N2 ---><----- L -----><- (N-L-R)--><----- R -----><----- N2 --->
-
-        Some or all the values U, D, L, R can be 0. In this case,
-        the padding of the parts related to the zero values will
-        fall back to the one of "padding" parameter.
-        For example, if padding="edge" and L, R are 0, then
-        the left and right parts will be padded with the edges, while
-        the Up and Down parts will be padded using the the user-provided
-        margins of the radio, and the final data will have shape
-        (Nrows - U - D, Ncols).
-        Some or all the values U, D, L, R can be the string "auto".
-        In this case, the values of U, D, L, R are automatically computed
-        as a function of the Paganin filter width.
-    use_R2C: bool, optional
-        Whether to use Real-to-Complex (R2C) transform instead of
-        standard Complex-to-Complex transform, providing better performances
-
-    Padding methods
-    ---------------
-    The phase retrieval is a convolution done in Fourier domain using FFT,
-    so the Fourier transform size has to be at least twice the size of
-    the original data. Mathematically, the data should be padded with zeros
-    before being Fourier transformed. However, in practice, this can lead
-    to artefacts at the edges (Gibbs effect) if the data does not go to
-    zero at the edges.
-    Apart from applying an apodization (Hamming, Blackman, etc), a common
-    strategy to avoid these artefacts is to pad the data.
-    In tomography reconstruction, this is usually done by replicating the
-    last(s) value(s) of the edges ; but one can think of other methods:
-
-       - "zeros": the data is simply padded with zeros.
-       - "mean": the upper side of extended data is padded with the mean of
-         the first row, the lower side with the mean of the last row, etc.
-       - "edge": the data is padded by replicating the edges.
-         This is the default mode.
-       - "sym": the data is padded by mirroring the data with respect
-         to its edges. See numpy.pad().
-       - "reflect": the data is padded by reflecting the data with respect
-         to its edges, including the edges. See numpy.pad().
-
-
-    Formulas
-    --------
-    The radio is divided, in the Fourier domain, by the original
-    "Paganin filter" [1]
-
-    $$
-    F + 1 + \frac{\delta}{\beta} \lambda D \rho |k|^2   # noqa W605
-    $$
-    where $k$ is the wave vector, computed as
-
-    $$
-    k_l = \frac{1}{P} (\frac{-1}{2} + \frac{l}{N-1})
-    $$
-    where $P$ is the pixel size, $N$ the number of pixels in one direction,
-    and $l \in [0, N-1]$.    # noqa W605
-    The factor $\rho$ is either $\pi$ or $1/(4\pi^2)$   # noqa W605
-    depending on the convention (default is the former).
-
-
-    References
-    -----------
-    [1] D. Paganin Et Al, "Simultaneous phase and amplitude extraction
-        from a single defocused image of a homogeneous object",
-        Journal of Microscopy, Vol 206, Part 1, 2002
-    """
-
-    powers = generate_powers()
-
-    def __init__(
-        self,
-        shape,
-        distance=50,
-        energy=20,
-        delta_beta=250.0,
-        pixel_size=1,
-        padding="edge",
-        margin=None,
-        use_R2C=True,
-    ):
-        self._init_parameters(
-            distance, energy, pixel_size, delta_beta, padding, use_R2C
-        )
-        self._calc_shape(shape, margin)
-        self.compute_filter()
-
-    def _init_parameters(
-        self, distance, energy, pixel_size, delta_beta, padding, use_R2C
-    ):
-        self.distance_cm = distance
-        self.distance_micron = distance * 1e4
-        self.energy_kev = energy
-        self.pixel_size_micron = pixel_size
-        self.delta_beta = delta_beta
-        self.wavelength_micron = 1.23984199e-3 / self.energy_kev
-        self.padding = padding
-        self.padding_methods = {
-            PaddingMode.ZEROS: self._pad_zeros,
-            PaddingMode.MEAN: self._pad_mean,
-            PaddingMode.EDGE: self._pad_edge,
-            PaddingMode.SYMMETRIC: self._pad_sym,
-            PaddingMode.REFLECT: self._pad_reflect,
-        }
-        self.use_R2C = use_R2C
-        if use_R2C:
-            self.fft_func = np.fft.rfft2
-            self.ifft_func = np.fft.irfft2
-        else:
-            self.fft_func = np.fft.fft2
-            self.ifft_func = np.fft.ifft2
-
-    def _calc_shape(self, shape, margin):
-        if np.isscalar(shape):
-            shape = (shape, shape)
-        else:
-            assert len(shape) == 2
-        self.shape = shape
-        self._set_margin_value(margin)
-        self._calc_padded_shape()
-
-    def _set_margin_value(self, margin):
-        self.margin = margin
-        if margin is None:
-            self.shape_inner = self.shape
-            self.use_margin = False
-            self.margin = ((0, 0), (0, 0))
-            return
-        self.use_margin = True
-        try:
-            ((U, D), (L, R)) = margin
-        except ValueError:
-            raise ValueError("Expected margin in the format ((U, D), (L, R))")
-        for val in [U, D, L, R]:
-            if type(val) is str and val != "auto":
-                raise ValueError("Expected either an integer, or 'auto'")
-            if int(val) != val or val < 0:
-                raise ValueError("Expected positive integers for margin values")
-        self.shape_inner = (self.shape[0] - U - D, self.shape[1] - L - R)
-
-    def _calc_padded_shape(self):
-        """
-        Compute the padded shape.
-        If margin = 0, length_padded = next_power(2*length).
-        Otherwise : length_padded = next_power(2*(length - margins))
-
-        Principle
-        ----------
-
-        <--------------------- nx_p --------------------->
-        |         |        original data       |         |
-        < -- Pl - ><-- L -->< -- nx --><-- R --><-- Pr -->
-                   <----------- nx0 ----------->
-
-        Pl, Pr : left/right padding length
-        L, R : left/right margin
-        nx : length of inner data (and length of final result)
-        nx0 : length of original data
-        nx_p : total length of padded data
-        """
-        n_y, n_x = self.shape_inner
-        n_y_p = self._get_next_power(2 * n_y)
-        n_x_p = self._get_next_power(2 * n_x)
-        self.shape_padded = (n_y_p, n_x_p)
-        self.data_padded = np.zeros((n_y_p, n_x_p), dtype=np.float64)
-
-        ((U, D), (L, R)) = self.margin
-        n_y0, n_x0 = self.shape
-        self.pad_top_len = (n_y_p - n_y0) // 2
-        self.pad_bottom_len = n_y_p - n_y0 - self.pad_top_len
-        self.pad_left_len = (n_x_p - n_x0) // 2
-        self.pad_right_len = n_x_p - n_x0 - self.pad_left_len
-
-    def _get_next_power(self, n):
-        """
-        Given a number, get the closest (upper) number p such that
-        p is a power of 2, 3, 5 and 7.
-        """
-        idx = bisect(self.powers, n)
-        if self.powers[idx - 1] == n:
-            return n
-        return self.powers[idx]
-
-    def compute_filter(self):
-        nyp, nxp = self.shape_padded
-        fftfreq = np.fft.rfftfreq if self.use_R2C else np.fft.fftfreq
-        fy = np.fft.fftfreq(nyp, d=self.pixel_size_micron)
-        fx = fftfreq(nxp, d=self.pixel_size_micron)
-        self._coords_grid = np.add.outer(fy**2, fx**2)
-        #
-        k2 = self._coords_grid
-        D = self.distance_micron
-        L = self.wavelength_micron
-        db = self.delta_beta
-        self.paganin_filter = 1.0 / (1 + db * L * D * pi * k2)  # HST / savu
-        # ~ self.paganin_filter = 1.0 / (1 + db * L * D * k2/ (4*pi))  # Paganin / tomopy
-
-    def pad_with_values(self, data, top_val=0, bottom_val=0, left_val=0, right_val=0):
-        """
-        Pad the data into `self.padded_data` with values.
-
-        Parameters
-        ----------
-        data: numpy.ndarray
-            data (radio)
-        top_val: float or numpy.ndarray, optional
-            Value(s) to fill the top of the padded data with.
-        bottom_val: float or numpy.ndarray, optional
-            Value(s) to fill the bottom of the padded data with.
-        left_val: float or numpy.ndarray, optional
-            Value(s) to fill the left of the padded data with.
-        right_val: float or numpy.ndarray, optional
-            Value(s) to fill the right of the padded data with.
-        """
-        self.data_padded.fill(0)
-        Pu, Pd = self.pad_top_len, self.pad_bottom_len
-        Pl, Pr = self.pad_left_len, self.pad_right_len
-        self.data_padded[:Pu, :] = top_val
-        self.data_padded[-Pd:, :] = bottom_val
-        self.data_padded[:, :Pl] = left_val
-        self.data_padded[:, -Pr:] = right_val
-        self.data_padded[Pu:-Pd, Pl:-Pr] = data
-        # Transform the data to the FFT layout
-        self.data_padded = np.roll(self.data_padded, (-Pu, -Pl), axis=(0, 1))
-
-    def _pad_zeros(self, data):
-        return self.pad_with_values(
-            data, top_val=0, bottom_val=0, left_val=0, right_val=0
-        )
-
-    def _pad_mean(self, data):
-        """
-        Pad the data at each border with a different constant value.
-        The value depends on the padding size:
-          - On the left, value = mean(first data column)
-          - On the right, value = mean(last data column)
-          - On the top, value = mean(first data row)
-          - On the bottom, value = mean(last data row)
-        """
-        return self.pad_with_values(
-            data,
-            top_val=np.mean(data[0, :]),
-            bottom_val=np.mean(data[-1, :]),
-            left_val=np.mean(data[:, 0]),
-            right_val=np.mean(data[:, -1]),
-        )
-
-    def _pad_numpy(self, data, mode):
-        data_padded = np.pad(
-            data,
-            (
-                (self.pad_top_len, self.pad_bottom_len),
-                (self.pad_left_len, self.pad_right_len),
-            ),
-            mode=mode.value,
-        )
-        # Transform the data to the FFT layout
-        Pu, Pl = self.pad_top_len, self.pad_left_len
-        return np.roll(data_padded, (-Pu, -Pl), axis=(0, 1))
-
-    def _pad_edge(self, data):
-        self.data_padded = self._pad_numpy(data, mode=PaddingMode.EDGE)
-
-    def _pad_sym(self, data):
-        self.data_padded = self._pad_numpy(data, mode=PaddingMode.SYMMETRIC)
-
-    def _pad_reflect(self, data):
-        self.data_padded = self._pad_numpy(data, mode=PaddingMode.REFLECT)
-
-    def pad_data(self, data, padding_method=None):
-        padding_method = padding_method or self.padding
-        padding_method = PaddingMode.from_value(padding_method)
-        if padding_method not in self.padding_methods:
-            raise ValueError(
-                "Unknown padding method %s. Available are: %s"
-                % (padding_method, str(list(self.padding_methods.keys())))
-            )
-        pad_func = self.padding_methods[padding_method]
-        pad_func(data)
-        return self.data_padded
-
-    def apply_filter(self, radio, padding_method=None):
-        self.pad_data(radio, padding_method=padding_method)
-        radio_f = self.fft_func(self.data_padded)
-        radio_f *= self.paganin_filter
-        radio_filtered = self.ifft_func(radio_f).real
-        s0, s1 = self.shape_inner
-        ((U, _), (L, _)) = self.margin
-        return radio_filtered[U : U + s0, L : L + s1]
-
-    def lmicron_to_db(self, Lmicron):
-        """
-        Utility to convert the "Lmicron" parameter of PyHST
-        to a value of delta/beta.
-        Please see the doc of nabu.preproc.phase.lmicron_to_db()
-        """
-        return lmicron_to_db(Lmicron, self.energy_kev, self.distance_micron)
-
-    __call__ = apply_filter