tomwer 1.1.1__py3-none-any.whl → 1.2.0a0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/__init__.py +1 -0
- orangecontrib/tomwer/orange/managedprocess.py +6 -4
- orangecontrib/tomwer/state_summary.py +3 -2
- orangecontrib/tomwer/widgets/__init__.py +2 -2
- orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +9 -7
- orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +6 -5
- orangecontrib/tomwer/widgets/control/AdvancementOW.py +2 -1
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +235 -0
- orangecontrib/tomwer/widgets/control/DataListOW.py +7 -5
- orangecontrib/tomwer/widgets/control/DataListenerOW.py +13 -14
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +8 -6
- orangecontrib/tomwer/widgets/control/DataTransfertOW.py +9 -9
- orangecontrib/tomwer/widgets/control/DataValidatorOW.py +7 -8
- orangecontrib/tomwer/widgets/control/DataWatcherOW.py +25 -17
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +8 -8
- orangecontrib/tomwer/widgets/control/FilterOW.py +9 -8
- orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py +3 -4
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +13 -14
- orangecontrib/tomwer/widgets/control/NotifierOW.py +3 -4
- orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +7 -5
- orangecontrib/tomwer/widgets/control/TimerOW.py +6 -5
- orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +5 -3
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -6
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +10 -9
- orangecontrib/tomwer/widgets/control/icons/datadiscover.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/datadiscover.svg +137 -0
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +5 -8
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +13 -15
- orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +3 -2
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +10 -7
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +8 -5
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -2
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +6 -3
- orangecontrib/tomwer/widgets/edit/test/test_dark_flat_patch.py +8 -6
- orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py +3 -1
- orangecontrib/tomwer/widgets/edit/test/test_image_key_upgrader.py +3 -1
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +3 -1
- orangecontrib/tomwer/widgets/other/PythonScriptOW.py +11 -11
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +22 -27
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +13 -11
- orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +11 -9
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +16 -14
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +27 -32
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +27 -34
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +23 -25
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +16 -18
- orangecontrib/tomwer/widgets/reconstruction/TofuOW.py +9 -7
- orangecontrib/tomwer/widgets/reconstruction/icons/nabu_2d.png +0 -0
- orangecontrib/tomwer/widgets/reconstruction/icons/nabu_2d.svg +8 -11
- orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +8 -8
- orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +6 -4
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +4 -3
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +4 -3
- orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +6 -4
- orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +8 -6
- orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +6 -3
- orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +7 -5
- orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py +5 -4
- tomwer/__init__.py +1 -1
- tomwer/__main__.py +2 -1
- tomwer/app/axis.py +18 -14
- tomwer/app/canvas.py +7 -5
- tomwer/app/canvas_launcher/config.py +8 -6
- tomwer/app/canvas_launcher/environ.py +1 -2
- tomwer/app/canvas_launcher/mainwindow.py +23 -22
- tomwer/app/canvas_launcher/splash.py +1 -0
- tomwer/app/canvas_launcher/widgetsscheme.py +3 -3
- tomwer/app/darkref.py +7 -6
- tomwer/app/darkrefpatch.py +8 -6
- tomwer/app/diffframe.py +6 -4
- tomwer/app/imagekeyeditor.py +10 -10
- tomwer/app/imagekeyupgrader.py +8 -6
- tomwer/app/intensitynormalization.py +8 -8
- tomwer/app/lamino.py +5 -3
- tomwer/app/nabuapp.py +8 -6
- tomwer/app/nxtomoeditor.py +6 -5
- tomwer/app/radiostack.py +8 -6
- tomwer/app/rsync.py +3 -3
- tomwer/app/saaxis.py +22 -23
- tomwer/app/sadeltabeta.py +21 -21
- tomwer/app/samplemoved.py +8 -6
- tomwer/app/scanviewer.py +7 -6
- tomwer/app/sinogramviewer.py +8 -7
- tomwer/app/slicestack.py +8 -6
- tomwer/app/stopdatalistener.py +2 -1
- tomwer/core/futureobject.py +15 -6
- tomwer/core/log/logger.py +4 -3
- tomwer/core/log/processlog.py +0 -1
- tomwer/core/process/conditions/filters.py +3 -3
- tomwer/core/process/control/datadiscovery.py +7 -0
- tomwer/core/process/control/datalistener/datalistener.py +22 -21
- tomwer/core/process/control/datalistener/rpcserver.py +18 -28
- tomwer/core/process/control/datawatcher/datawatcher.py +15 -12
- tomwer/core/process/control/datawatcher/datawatcherobserver.py +11 -8
- tomwer/core/process/control/datawatcher/datawatcherprocess.py +7 -5
- tomwer/core/process/control/datawatcher/edfdwprocess.py +5 -15
- tomwer/core/process/control/datawatcher/hdf5dwprocess.py +3 -1
- tomwer/core/process/control/datawatcher/status.py +2 -0
- tomwer/core/process/control/nxtomomill.py +7 -6
- tomwer/core/process/control/scanlist.py +2 -1
- tomwer/core/process/control/scanselector.py +1 -0
- tomwer/core/process/control/scantransfer.py +12 -12
- tomwer/core/process/control/scanvalidator.py +7 -6
- tomwer/core/process/control/test/test_volume_link.py +5 -4
- tomwer/core/process/control/timer.py +4 -4
- tomwer/core/process/control/volumeselector.py +1 -0
- tomwer/core/process/control/volumesymlink.py +8 -9
- tomwer/core/process/edit/darkflatpatch.py +9 -12
- tomwer/core/process/edit/imagekeyeditor.py +11 -13
- tomwer/core/process/reconstruction/axis/axis.py +36 -38
- tomwer/core/process/reconstruction/axis/mode.py +2 -1
- tomwer/core/process/reconstruction/axis/params.py +23 -28
- tomwer/core/process/reconstruction/darkref/darkrefs.py +23 -27
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +14 -18
- tomwer/core/process/reconstruction/darkref/params.py +3 -1
- tomwer/core/process/reconstruction/lamino/tofu.py +11 -15
- tomwer/core/process/reconstruction/nabu/castvolume.py +15 -18
- tomwer/core/process/reconstruction/nabu/nabucommon.py +19 -20
- tomwer/core/process/reconstruction/nabu/nabuscores.py +16 -14
- tomwer/core/process/reconstruction/nabu/nabuslices.py +27 -22
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +20 -22
- tomwer/core/process/reconstruction/nabu/utils.py +17 -15
- tomwer/core/process/reconstruction/normalization/__init__.py +1 -3
- tomwer/core/process/reconstruction/normalization/normalization.py +16 -21
- tomwer/core/process/reconstruction/normalization/params.py +2 -2
- tomwer/core/process/reconstruction/saaxis/__init__.py +1 -1
- tomwer/core/process/reconstruction/saaxis/params.py +6 -7
- tomwer/core/process/reconstruction/saaxis/saaxis.py +44 -55
- tomwer/core/process/reconstruction/sadeltabeta/__init__.py +1 -1
- tomwer/core/process/reconstruction/sadeltabeta/params.py +9 -13
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +40 -46
- tomwer/core/process/reconstruction/scores/__init__.py +2 -2
- tomwer/core/process/reconstruction/scores/params.py +6 -9
- tomwer/core/process/reconstruction/scores/scores.py +10 -13
- tomwer/core/process/reconstruction/test/test_axis_params.py +4 -2
- tomwer/core/process/reconstruction/test/test_darkref.py +1 -2
- tomwer/core/process/reconstruction/test/test_darkref_copy.py +3 -1
- tomwer/core/process/reconstruction/test/test_paramsbase.py +1 -1
- tomwer/core/process/reconstruction/test/test_saaxis.py +11 -7
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +5 -4
- tomwer/core/process/reconstruction/test/test_utils.py +3 -2
- tomwer/core/process/script/python.py +6 -8
- tomwer/core/process/task.py +11 -12
- tomwer/core/process/test/test_axis.py +12 -9
- tomwer/core/process/test/test_conditions.py +8 -8
- tomwer/core/process/test/test_dark_and_flat.py +9 -8
- tomwer/core/process/test/test_data_listener.py +5 -3
- tomwer/core/process/test/test_data_transfer.py +14 -12
- tomwer/core/process/test/test_data_watcher.py +3 -1
- tomwer/core/process/test/test_lamino.py +3 -1
- tomwer/core/process/test/test_nabu.py +13 -12
- tomwer/core/process/test/test_normalization.py +7 -5
- tomwer/core/process/test/test_timer.py +2 -1
- tomwer/core/process/utils.py +9 -9
- tomwer/core/progress.py +3 -4
- tomwer/core/scan/blissscan.py +4 -2
- tomwer/core/scan/edfscan.py +26 -29
- tomwer/core/scan/futurescan.py +2 -1
- tomwer/core/scan/hdf5scan.py +21 -28
- tomwer/core/scan/scanbase.py +18 -18
- tomwer/core/scan/scanfactory.py +20 -21
- tomwer/core/scan/scantype.py +7 -0
- tomwer/core/scan/test/test_edf.py +2 -1
- tomwer/core/scan/test/test_future_scan.py +2 -1
- tomwer/core/scan/test/test_h5.py +5 -4
- tomwer/core/scan/test/test_process_registration.py +5 -3
- tomwer/core/scan/test/test_scan.py +11 -9
- tomwer/core/settings.py +1 -2
- tomwer/core/test/test_lamino.py +3 -2
- tomwer/core/test/test_scanutils.py +3 -2
- tomwer/core/test/test_utils.py +6 -4
- tomwer/core/utils/__init__.py +8 -6
- tomwer/core/utils/deprecation.py +2 -2
- tomwer/core/utils/image.py +4 -3
- tomwer/core/utils/locker.py +1 -1
- tomwer/core/utils/normalization.py +1 -0
- tomwer/core/utils/nxtomoutils.py +2 -1
- tomwer/core/utils/scanutils.py +9 -6
- tomwer/core/utils/slurm.py +2 -1
- tomwer/core/utils/time.py +2 -4
- tomwer/core/utils/volumeutils.py +2 -1
- tomwer/core/volume/__init__.py +1 -1
- tomwer/core/volume/edfvolume.py +4 -3
- tomwer/core/volume/hdf5volume.py +6 -8
- tomwer/core/volume/jp2kvolume.py +4 -3
- tomwer/core/volume/rawvolume.py +7 -7
- tomwer/core/volume/tiffvolume.py +8 -6
- tomwer/core/volume/volumebase.py +1 -0
- tomwer/core/volume/volumefactory.py +18 -18
- tomwer/gui/cluster/slurm.py +2 -0
- tomwer/gui/cluster/supervisor.py +4 -2
- tomwer/gui/cluster/test/test_cluster.py +5 -4
- tomwer/gui/cluster/test/test_supervisor.py +4 -2
- tomwer/gui/conditions/filter.py +7 -6
- tomwer/gui/control/actions.py +1 -0
- tomwer/gui/control/datadiscovery.py +168 -0
- tomwer/gui/control/datalist.py +29 -28
- tomwer/gui/control/datalistener.py +8 -4
- tomwer/gui/control/datareacheractions.py +2 -1
- tomwer/gui/control/datatransfert.py +3 -1
- tomwer/gui/control/datavalidator.py +11 -12
- tomwer/gui/control/datawatcher/configuration.py +12 -1
- tomwer/gui/control/datawatcher/controlwidget.py +116 -0
- tomwer/gui/control/datawatcher/datawatcher.py +63 -121
- tomwer/gui/control/datawatcher/datawatcherobserver.py +7 -9
- tomwer/gui/control/history.py +3 -1
- tomwer/gui/control/observations.py +7 -7
- tomwer/gui/control/scanselectorwidget.py +4 -2
- tomwer/gui/control/selectorwidgetbase.py +3 -1
- tomwer/gui/control/serie/seriecreator.py +11 -12
- tomwer/gui/control/singletomoobj.py +4 -4
- tomwer/gui/control/test/test_datadiscovery.py +27 -0
- tomwer/gui/control/test/test_datalist.py +7 -6
- tomwer/gui/control/test/test_datalistener.py +4 -4
- tomwer/gui/control/test/test_datavalidator.py +3 -1
- tomwer/gui/control/test/test_inputwidget.py +5 -4
- tomwer/gui/control/test/test_process_manager.py +3 -3
- tomwer/gui/control/test/test_scanselector.py +6 -4
- tomwer/gui/control/test/test_scanvalidator.py +6 -5
- tomwer/gui/control/test/test_single_tomo_obj.py +5 -3
- tomwer/gui/control/test/test_volume_dialog.py +7 -5
- tomwer/gui/control/test/test_volumeselector.py +8 -6
- tomwer/gui/control/volumeselectorwidget.py +2 -1
- tomwer/gui/debugtools/datasetgenerator.py +2 -1
- tomwer/gui/debugtools/objectinspector.py +6 -7
- tomwer/gui/edit/dkrfpatch.py +11 -10
- tomwer/gui/edit/imagekeyeditor.py +12 -12
- tomwer/gui/edit/nxtomoeditor.py +8 -7
- tomwer/gui/edit/test/test_dkrf_patch.py +10 -9
- tomwer/gui/edit/test/test_image_key_editor.py +8 -6
- tomwer/gui/edit/test/test_nx_editor.py +7 -5
- tomwer/gui/icons.py +3 -2
- tomwer/gui/illustrations.py +3 -2
- tomwer/gui/imagefromfile.py +3 -1
- tomwer/gui/qfolderdialog.py +14 -12
- tomwer/gui/reconstruction/axis/CompareImages.py +9 -8
- tomwer/gui/reconstruction/axis/__init__.py +1 -1
- tomwer/gui/reconstruction/axis/axis.py +9 -7
- tomwer/gui/reconstruction/axis/radioaxis.py +30 -32
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +6 -5
- tomwer/gui/reconstruction/darkref/darkrefwidget.py +4 -2
- tomwer/gui/reconstruction/lamino/tofu/misc.py +3 -1
- tomwer/gui/reconstruction/lamino/tofu/projections.py +16 -8
- tomwer/gui/reconstruction/lamino/tofu/tofu.py +6 -3
- tomwer/gui/reconstruction/lamino/tofu/tofuexpert.py +5 -2
- tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py +8 -5
- tomwer/gui/reconstruction/nabu/action.py +1 -0
- tomwer/gui/reconstruction/nabu/castvolume.py +6 -4
- tomwer/gui/reconstruction/nabu/check.py +3 -2
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +5 -2
- tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -3
- tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +4 -3
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +7 -5
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +8 -6
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +7 -7
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +40 -33
- tomwer/gui/reconstruction/nabu/nabuflow.py +7 -4
- tomwer/gui/reconstruction/nabu/slices.py +14 -10
- tomwer/gui/reconstruction/nabu/slurm.py +1 -0
- tomwer/gui/reconstruction/nabu/volume.py +5 -3
- tomwer/gui/reconstruction/normalization/intensity.py +14 -13
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +36 -35
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +5 -4
- tomwer/gui/reconstruction/saaxis/saaxis.py +17 -17
- tomwer/gui/reconstruction/saaxis/sliceselector.py +5 -5
- tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +33 -36
- tomwer/gui/reconstruction/scores/scoreplot.py +19 -18
- tomwer/gui/reconstruction/test/test_axis.py +14 -13
- tomwer/gui/reconstruction/test/test_lamino.py +3 -2
- tomwer/gui/reconstruction/test/test_nabu.py +8 -6
- tomwer/gui/reconstruction/test/test_saaxis.py +17 -15
- tomwer/gui/reconstruction/test/test_sadeltabeta.py +15 -13
- tomwer/gui/samplemoved/__init__.py +8 -7
- tomwer/gui/samplemoved/selectiontable.py +4 -2
- tomwer/gui/stackplot.py +14 -13
- tomwer/gui/stacks.py +11 -9
- tomwer/gui/test/test_axis_gui.py +5 -4
- tomwer/gui/test/test_qfolder_dialog.py +2 -1
- tomwer/gui/utils/__init__.py +5 -5
- tomwer/gui/utils/buttons.py +1 -0
- tomwer/gui/utils/completer.py +1 -0
- tomwer/gui/utils/flow.py +4 -2
- tomwer/gui/utils/illustrations.py +1 -0
- tomwer/gui/utils/inputwidget.py +11 -17
- tomwer/gui/utils/lineselector/lineselector.py +6 -8
- tomwer/gui/utils/qt_utils.py +1 -0
- tomwer/gui/utils/scandescription.py +2 -0
- tomwer/gui/utils/splashscreen.py +1 -1
- tomwer/gui/utils/unitsystem.py +3 -1
- tomwer/gui/utils/vignettes.py +8 -8
- tomwer/gui/utils/waiterthread.py +2 -1
- tomwer/gui/visualization/dataviewer.py +20 -28
- tomwer/gui/visualization/diffviewer/diffviewer.py +17 -20
- tomwer/gui/visualization/diffviewer/shiftwidget.py +3 -1
- tomwer/gui/visualization/nxtomometadata.py +1 -0
- tomwer/gui/visualization/reconstructionparameters.py +13 -12
- tomwer/gui/visualization/scanoverview.py +5 -3
- tomwer/gui/visualization/sinogramviewer.py +3 -2
- tomwer/gui/visualization/test/test_dataviewer.py +3 -1
- tomwer/gui/visualization/test/test_diffviewer.py +8 -6
- tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +5 -3
- tomwer/gui/visualization/test/test_reconstruction_parameters.py +5 -3
- tomwer/gui/visualization/test/test_sinogramviewer.py +10 -9
- tomwer/gui/visualization/test/test_stacks.py +8 -6
- tomwer/gui/visualization/test/test_volumeviewer.py +10 -8
- tomwer/gui/visualization/tomoobjoverview.py +7 -4
- tomwer/gui/visualization/volumeoverview.py +5 -3
- tomwer/gui/visualization/volumeviewer.py +15 -14
- tomwer/io/utils/__init__.py +3 -3
- tomwer/io/utils/h5pyutils.py +2 -1
- tomwer/io/utils/utils.py +17 -21
- tomwer/resources/__init__.py +1 -1
- tomwer/synctools/axis.py +3 -1
- tomwer/synctools/darkref.py +3 -2
- tomwer/synctools/datalistener.py +10 -6
- tomwer/synctools/datatransfert.py +2 -3
- tomwer/synctools/imageloaderthread.py +5 -3
- tomwer/synctools/rsyncmanager.py +3 -2
- tomwer/synctools/saaxis.py +3 -1
- tomwer/synctools/sadeltabeta.py +3 -1
- tomwer/synctools/stacks/control/datalistener.py +9 -12
- tomwer/synctools/stacks/edit/darkflatpatch.py +13 -12
- tomwer/synctools/stacks/edit/imagekeyeditor.py +12 -11
- tomwer/synctools/stacks/processingstack.py +3 -2
- tomwer/synctools/stacks/reconstruction/axis.py +12 -12
- tomwer/synctools/stacks/reconstruction/castvolume.py +8 -5
- tomwer/synctools/stacks/reconstruction/dkrefcopy.py +10 -9
- tomwer/synctools/stacks/reconstruction/lamino.py +9 -7
- tomwer/synctools/stacks/reconstruction/nabu.py +18 -17
- tomwer/synctools/stacks/reconstruction/normalization.py +12 -16
- tomwer/synctools/stacks/reconstruction/saaxis.py +13 -11
- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +16 -14
- tomwer/synctools/test/test_darkRefs.py +4 -3
- tomwer/synctools/test/test_foldertransfer.py +14 -12
- tomwer/synctools/test/test_scanstages.py +8 -7
- tomwer/synctools/utils/scanstages.py +7 -5
- tomwer/tests/conftest.py +4 -4
- tomwer/tests/test_scripts.py +3 -2
- tomwer/tests/utils/__init__.py +5 -4
- tomwer/tests/utils/utilstest.py +5 -6
- tomwer/third_party/nabu/preproc/phase.py +7 -5
- tomwer/third_party/nabu/utils.py +3 -2
- tomwer/utils.py +12 -12
- tomwer/version.py +4 -4
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/METADATA +2 -2
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/RECORD +353 -345
- /tomwer-1.1.1-py3.8-nspkg.pth → /tomwer-1.2.0a0-py3.8-nspkg.pth +0 -0
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/LICENSE +0 -0
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/WHEEL +0 -0
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/entry_points.txt +0 -0
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/namespace_packages.txt +0 -0
- {tomwer-1.1.1.dist-info → tomwer-1.2.0a0.dist-info}/top_level.txt +0 -0
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__license__ = "MIT"
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__date__ = "19/07/2018"
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import tomwer.core.process.conditions.filters
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from orangecontrib.tomwer.orange.managedprocess import SuperviseOW
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from
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from tomwer.gui.conditions.filter import FileNameFilterWidget
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+
from tomwer.core.process.conditions import filters
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from tomwer.core.scan.scanbase import TomwerScanBase
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from
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from tomwer.gui.conditions.filter import FileNameFilterWidget
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from tomwer.utils import docstring
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from tomwer.core.process.conditions import filters
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import logging
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logger = logging.getLogger(__name__)
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@@ -98,11 +99,11 @@ class NameFilterOW(SuperviseOW):
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out = process.outputs.data
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if out is not None:
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self.set_dataset_state(dataset=scan, state=DatasetState.SUCCEED)
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logger.processSucceed("{} pass through filter"
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logger.processSucceed(f"{scan} pass through filter")
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self._signalScanReady(scan)
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else:
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self.set_dataset_state(dataset=scan, state=DatasetState.FAILED)
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logger.processFailed("{} NOT pass through filter"
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logger.processFailed(f"{scan} NOT pass through filter")
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@docstring(SuperviseOW)
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def reprocess(self, dataset):
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@@ -1,5 +1,6 @@
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-
import os
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import logging
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import os
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+
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from orangewidget.settings import Setting
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_logger = logging.getLogger(__name__)
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@@ -46,9 +47,7 @@ class NXTomomillMixIn:
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) # pylint: disable=E1102
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except Exception as e:
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self._logger.error(
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"Fail to use configuration file {}."
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"Error is {}. No conversion will be done."
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"".format(cfg_file, e)
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f"Fail to use configuration file {cfg_file}. Error is {e}. No conversion will be done."
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)
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else:
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default_inputs = {
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__license__ = "MIT"
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__date__ = "11/03/2020"
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import os
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import logging
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import os
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from copy import copy
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-
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+
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from nxtomomill.io.config import TomoHDF5Config as HDF5Config
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from orangewidget import gui
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-
from
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from silx.gui import qt
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+
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from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
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from tomwer.core.scan.hdf5scan import HDF5TomoScan, HDF5TomoScanIdentifier
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from tomwer.core.process.control.nxtomomill import H5ToNxProcess
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from orangecontrib.tomwer.widgets.control.NXTomomillMixIn import NXTomomillMixIn
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from tomwer.core.process.control.nxtomomill import H5ToNxProcess
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from tomwer.core.scan.blissscan import BlissScan
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from
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from tomwer.gui.control.
|
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-
from tomwer.gui.control.nxtomomill import NXTomomillInput
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from tomwer.core.scan.hdf5scan import HDF5TomoScan, HDF5TomoScanIdentifier
|
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from tomwer.gui.control.datalist import BlissHDF5DataListMainWindow
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from tomwer.gui.control.nxtomomill import NXTomomillInput, OverwriteMessage
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logger = logging.getLogger(__name__)
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@@ -164,7 +165,7 @@ class NXTomomillOW(
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:param str bliss_url: string at entry@file format
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"""
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logger.processStarted("Start translate {} to NXTomo"
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logger.processStarted(f"Start translate {bliss_url} to NXTomo")
|
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self.__configuration_cache = HDF5Config.from_dict(
|
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copy(self.get_default_input_values()["h5_to_nx_configuration"])
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)
|
@@ -242,9 +243,9 @@ class NXTomomillOW(
|
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try:
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self.widget.add(scan)
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except Exception as e:
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logger.error("Fail to add {}. Error is {}"
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+
logger.error(f"Fail to add {scan}. Error is {e}")
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else:
|
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logger.warning("{} is an invalid link to a file"
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+
logger.warning(f"{scan} is an invalid link to a file")
|
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if "nxtomomill_cfg_file" in self._ewoks_default_inputs: # pylint: disable=E1135
|
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nxtomo_cfg_file = self._ewoks_default_inputs[ # pylint: disable=E1136
|
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"nxtomomill_cfg_file"
|
@@ -264,9 +265,7 @@ class NXTomomillOW(
|
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configuration = HDF5Config.from_cfg_file(configuration_file)
|
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except Exception as e:
|
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logger.error(
|
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-
"Fail to use configuration file {}."
|
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-
"Error is {}. No conversion will be done."
|
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-
"".format(configuration_file, e)
|
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+
f"Fail to use configuration file {configuration_file}. Error is {e}. No conversion will be done."
|
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)
|
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return None
|
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return configuration
|
@@ -27,12 +27,11 @@ __authors__ = ["H. Payno"]
|
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__license__ = "MIT"
|
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__date__ = "19/07/2018"
|
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from orangewidget import gui
|
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-
from silx.gui import qt
|
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from orangewidget import widget
|
30
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+
from orangewidget import gui, settings, widget
|
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from orangewidget.widget import Input, Output
|
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+
from silx.gui import qt
|
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+
|
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from tomwer.core.tomwer_object import TomwerObject
|
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-
from orangewidget import settings
|
36
35
|
|
37
36
|
|
38
37
|
class NotifierWidgetOW(widget.OWBaseWidget):
|
@@ -27,17 +27,19 @@ __authors__ = ["C. Nemoz", "H. Payno"]
|
|
27
27
|
__license__ = "MIT"
|
28
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|
__date__ = "25/08/2022"
|
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|
|
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+
import logging
|
31
|
+
|
32
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+
import tomoscan.esrf.scan.utils
|
30
33
|
from orangewidget import gui
|
34
|
+
from orangewidget.settings import Setting
|
35
|
+
from orangewidget.widget import Input, Output, OWBaseWidget
|
36
|
+
|
37
|
+
import tomwer.core.process.control.singletomoobj
|
31
38
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from tomwer.core.scan.scanbase import TomwerScanBase
|
32
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from tomwer.core.scan.scanfactory import ScanFactory
|
33
40
|
from tomwer.core.tomwer_object import TomwerObject
|
34
41
|
from tomwer.core.volume.volumefactory import VolumeFactory
|
35
42
|
from tomwer.gui.control.singletomoobj import SingleTomoObj
|
36
|
-
from orangewidget.settings import Setting
|
37
|
-
from orangewidget.widget import Output, Input, OWBaseWidget
|
38
|
-
import tomoscan.esrf.scan.utils
|
39
|
-
import tomwer.core.process.control.singletomoobj
|
40
|
-
import logging
|
41
43
|
|
42
44
|
_logger = logging.getLogger(__name__)
|
43
45
|
|
@@ -27,18 +27,19 @@ __authors__ = ["H. Payno"]
|
|
27
27
|
__license__ = "MIT"
|
28
28
|
__date__ = "19/07/2018"
|
29
29
|
|
30
|
-
|
30
|
+
import functools
|
31
|
+
import logging
|
32
|
+
|
31
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|
from orangewidget import gui
|
32
34
|
from orangewidget.settings import Setting
|
33
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|
from orangewidget.widget import Input, Output
|
36
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+
from processview.core.manager import DatasetState, ProcessManager
|
37
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+
from silx.gui import qt
|
34
38
|
|
35
39
|
import tomwer.core.process.control.timer
|
36
|
-
from tomwer.core.scan.scanbase import TomwerScanBase
|
37
|
-
from processview.core.manager import ProcessManager, DatasetState
|
38
40
|
from orangecontrib.tomwer.orange.managedprocess import SuperviseOW
|
41
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+
from tomwer.core.scan.scanbase import TomwerScanBase
|
39
42
|
from tomwer.utils import docstring
|
40
|
-
import logging
|
41
|
-
import functools
|
42
43
|
|
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|
_logger = logging.getLogger(__name__)
|
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|
@@ -29,13 +29,15 @@ __authors__ = [
|
|
29
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|
__license__ = "MIT"
|
30
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__date__ = "12/07/2022"
|
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|
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+
import logging
|
33
|
+
|
32
34
|
from orangewidget import gui
|
33
|
-
from orangewidget.widget import
|
35
|
+
from orangewidget.widget import Input, Output, OWBaseWidget
|
34
36
|
from tomoscan.serie import Serie
|
35
|
-
|
37
|
+
|
36
38
|
import tomwer.core.process.control.tomoobjserie
|
39
|
+
from tomwer.core.tomwer_object import TomwerObject
|
37
40
|
from tomwer.gui.control.serie.seriecreator import SerieWidgetDialog
|
38
|
-
import logging
|
39
41
|
|
40
42
|
logger = logging.getLogger(__name__)
|
41
43
|
|
@@ -29,15 +29,17 @@ __authors__ = [
|
|
29
29
|
__license__ = "MIT"
|
30
30
|
__date__ = "12/07/2022"
|
31
31
|
|
32
|
-
|
32
|
+
import logging
|
33
|
+
|
33
34
|
from orangewidget import gui
|
34
|
-
from orangewidget.widget import Output, Input, OWBaseWidget
|
35
|
-
from tomwer.core.volume.volumebase import TomwerVolumeBase
|
36
|
-
from tomwer.core.scan.hdf5scan import HDF5TomoScan
|
37
|
-
from tomwer.gui.control.volumeselectorwidget import VolumeSelectorWidget
|
38
35
|
from orangewidget.settings import Setting
|
36
|
+
from orangewidget.widget import Input, Output, OWBaseWidget
|
37
|
+
from silx.gui import qt
|
38
|
+
|
39
39
|
import tomwer.core.process.control.volumeselector
|
40
|
-
import
|
40
|
+
from tomwer.core.scan.hdf5scan import HDF5TomoScan
|
41
|
+
from tomwer.core.volume.volumebase import TomwerVolumeBase
|
42
|
+
from tomwer.gui.control.volumeselectorwidget import VolumeSelectorWidget
|
41
43
|
|
42
44
|
logger = logging.getLogger(__name__)
|
43
45
|
|
@@ -28,20 +28,21 @@ __license__ = "MIT"
|
|
28
28
|
__date__ = "16/11/2020"
|
29
29
|
|
30
30
|
|
31
|
-
|
31
|
+
import logging
|
32
|
+
|
32
33
|
from orangewidget import gui
|
34
|
+
from orangewidget.settings import Setting
|
35
|
+
from orangewidget.widget import Input, Output
|
36
|
+
from processview.core.manager import DatasetState, ProcessManager
|
37
|
+
from silx.gui import qt
|
33
38
|
|
34
39
|
import tomwer.core.process.control.volumesymlink
|
35
|
-
from
|
36
|
-
from orangewidget.widget import Output, Input
|
37
|
-
from tomwer.core.scan.scanbase import TomwerScanBase
|
40
|
+
from orangecontrib.tomwer.orange.managedprocess import SuperviseOW
|
38
41
|
from tomwer.core.process.control.volumesymlink import (
|
39
42
|
OutputType,
|
40
43
|
VolumeSymbolicLinkProcess,
|
41
44
|
)
|
42
|
-
from
|
43
|
-
from processview.core.manager import ProcessManager, DatasetState
|
44
|
-
import logging
|
45
|
+
from tomwer.core.scan.scanbase import TomwerScanBase
|
45
46
|
|
46
47
|
_logger = logging.getLogger(__name__)
|
47
48
|
|
@@ -115,13 +116,13 @@ class VolumeSymLinkOW(SuperviseOW):
|
|
115
116
|
try:
|
116
117
|
symlink_process.run()
|
117
118
|
except Exception:
|
118
|
-
mess = "Failed to create symbolic link for {}"
|
119
|
+
mess = f"Failed to create symbolic link for {scan}"
|
119
120
|
_logger.processFailed(mess)
|
120
121
|
ProcessManager().notify_dataset_state(
|
121
122
|
dataset=self.scan, process=self, state=DatasetState.FAILED, details=mess
|
122
123
|
)
|
123
124
|
else:
|
124
|
-
mess = "Create symbolic link for {}"
|
125
|
+
mess = f"Create symbolic link for {scan}"
|
125
126
|
_logger.processSucceed(mess)
|
126
127
|
ProcessManager().notify_dataset_state(
|
127
128
|
dataset=self.scan,
|
Binary file
|
@@ -0,0 +1,137 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
2
|
+
<!-- Created with Inkscape (http://www.inkscape.org/) -->
|
3
|
+
|
4
|
+
<svg
|
5
|
+
xmlns:dc="http://purl.org/dc/elements/1.1/"
|
6
|
+
xmlns:cc="http://creativecommons.org/ns#"
|
7
|
+
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
|
8
|
+
xmlns:svg="http://www.w3.org/2000/svg"
|
9
|
+
xmlns="http://www.w3.org/2000/svg"
|
10
|
+
xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
|
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+
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
|
12
|
+
id="svg2"
|
13
|
+
width="36px"
|
14
|
+
height="31px"
|
15
|
+
version="1.1"
|
16
|
+
sodipodi:docname="datadiscover.svg"
|
17
|
+
inkscape:version="0.92.5 (2060ec1f9f, 2020-04-08)">
|
18
|
+
<sodipodi:namedview
|
19
|
+
pagecolor="#ffffff"
|
20
|
+
bordercolor="#666666"
|
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|
+
borderopacity="1"
|
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|
+
objecttolerance="10"
|
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|
+
gridtolerance="10"
|
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|
+
guidetolerance="10"
|
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|
+
inkscape:pageopacity="0"
|
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+
inkscape:pageshadow="2"
|
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inkscape:window-width="1508"
|
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inkscape:window-height="826"
|
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+
id="namedview29"
|
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+
showgrid="false"
|
31
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+
inkscape:zoom="7.6129032"
|
32
|
+
inkscape:cx="18"
|
33
|
+
inkscape:cy="15.5"
|
34
|
+
inkscape:window-x="72"
|
35
|
+
inkscape:window-y="27"
|
36
|
+
inkscape:window-maximized="0"
|
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|
+
inkscape:current-layer="layer1" />
|
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|
+
<defs
|
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|
+
id="defs8">
|
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|
+
<marker
|
41
|
+
id="TriangleOutM"
|
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|
+
overflow="visible"
|
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|
+
orient="auto">
|
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|
+
<path
|
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|
+
id="path3916"
|
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|
+
transform="scale(.4)"
|
47
|
+
d="m5.77 0-8.65 5v-10l8.65 5z"
|
48
|
+
fill-rule="evenodd"
|
49
|
+
stroke="#000"
|
50
|
+
stroke-width="1pt" />
|
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|
+
</marker>
|
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|
+
<filter
|
53
|
+
id="filter3815">
|
54
|
+
<feGaussianBlur
|
55
|
+
id="feGaussianBlur3817"
|
56
|
+
stdDeviation="0.069119977" />
|
57
|
+
</filter>
|
58
|
+
<filter
|
59
|
+
id="filter3784">
|
60
|
+
<feGaussianBlur
|
61
|
+
id="feGaussianBlur3786"
|
62
|
+
stdDeviation="0.10012024" />
|
63
|
+
</filter>
|
64
|
+
<radialGradient
|
65
|
+
id="radialGradient3022"
|
66
|
+
cx="13.792"
|
67
|
+
cy="20.623"
|
68
|
+
r="6.9238"
|
69
|
+
gradientTransform="matrix(1 0 0 1.0949 0 -1.9563)"
|
70
|
+
gradientUnits="userSpaceOnUse">
|
71
|
+
<stop
|
72
|
+
id="stop3790"
|
73
|
+
stop-color="#dfd4d4"
|
74
|
+
stop-opacity=".69565"
|
75
|
+
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|
76
|
+
<stop
|
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|
+
id="stop3792"
|
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|
+
stop-opacity="0"
|
79
|
+
offset="1" />
|
80
|
+
</radialGradient>
|
81
|
+
<linearGradient
|
82
|
+
id="linearGradient3024"
|
83
|
+
x1="3.5069"
|
84
|
+
x2="12.781"
|
85
|
+
y1="25.746"
|
86
|
+
y2="25.746"
|
87
|
+
gradientUnits="userSpaceOnUse">
|
88
|
+
<stop
|
89
|
+
id="stop3755"
|
90
|
+
stop-color="#dedde8"
|
91
|
+
offset="0" />
|
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|
+
<stop
|
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|
+
id="stop3757"
|
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|
+
stop-opacity="0"
|
95
|
+
offset="1" />
|
96
|
+
</linearGradient>
|
97
|
+
</defs>
|
98
|
+
<metadata
|
99
|
+
id="metadata4">
|
100
|
+
<rdf:RDF>
|
101
|
+
<cc:Work
|
102
|
+
rdf:about="">
|
103
|
+
<dc:format>image/svg+xml</dc:format>
|
104
|
+
<dc:type
|
105
|
+
rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
|
106
|
+
<dc:title></dc:title>
|
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