tomwer 1.1.0rc6__py3-none-any.whl → 1.1.1__py3-none-any.whl

orangecontrib/tomwer/widgets/cluster/__init__.py

@@ -22,7 +22,7 @@
 #
 #############################################################################
 
-NAME = "cluster"
+NAME = "compute cluster"
 
 ID = "orangecontrib.tomwer.widgets.cluster"
 

orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py

@@ -115,7 +115,6 @@ class EDF2NXOW(
         self._loadSettings()
 
     def _updateSettings(self):
-        super()._updateSettings()
         self._ewoks_default_inputs[  # pylint: disable=E1137
             "convert_auto_edfscan_channel"
         ] = self.convertAutoEDFScanReceivedFromChannel()

orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py

@@ -190,7 +190,8 @@ class SAAxisWindow(_SAAxisWindow):
         if scan is None:
             return
         assert isinstance(scan, TomwerScanBase)
-        selected_cor_value = self.getCurrentCorValue()
+        selected_cor_value = self.getCurrentCorValue() or scan.saaxis_params.autofocus
+        # if validate is done manually then pick current cor value; else we are in 'auto mode' and get it from the autofocus.
         details = ProcessManager().get_dataset_details(
             dataset_id=scan.get_identifier(), process=self._processing_stack
         )
@@ -453,9 +454,9 @@ class SAAxisOW(SuperviseOW, WidgetLongProcessing):
             "data": None,
             "sa_axis_params": self._widget.getConfiguration(),
         }
-        self._ewoks_default_inputs["sa_axis_params"][
-            "autofocus_lock"
-        ] = self._widget.isAutoFocusLock()
+        self._ewoks_default_inputs["sa_axis_params"]["workflow"] = {
+            "autofocus_lock": self._widget.isAutoFocusLock(),
+        }
 
     def _raiseResults(self):
         if not self.isAutoFocusLock():

orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py

@@ -125,7 +125,9 @@ class SADeltaBetaWindow(_SADeltaBetaWindow):
         if scan is None:
             return
         assert isinstance(scan, TomwerScanBase)
-        selected_db_value = self.getCurrentDeltaBetaValue()
+        selected_db_value = (
+            self.getCurrentDeltaBetaValue() or scan.sa_delta_beta_params.autofocus
+        )
         if selected_db_value is None:
             infos = "no selected delta / beta value. {} skip SADeltaBetaParams".format(
                 scan

orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py

@@ -74,4 +74,4 @@ class DiffViewerOW(widget.OWBaseWidget, openclass=True):
         self.viewer.addScan(scan)
 
     def sizeHint(self):
-        return qt.QSize(400, 500)
+        return qt.QSize(500, 700)

tomwer/app/canvas_launcher/mainwindow.py

@@ -16,6 +16,7 @@ from orangecanvas.application.outputview import (
     ExceptHook,
     TerminalTextDocument,
 )
+from xml.sax.saxutils import escape
 import logging
 import os
 import shutil
@@ -26,6 +27,19 @@ from .config import TomwerConfig, TomwerSplashScreen
 import tomwer.version
 from urllib.request import urlopen
 
+try:
+    import nabu
+except ImportError:
+    has_nabu = False
+else:
+    has_nabu = True
+try:
+    import nxtomomill.version
+except ImportError:
+    has_nxtomomill = False
+else:
+    has_nxtomomill = True
+
 _logger = logging.getLogger(__file__)
 
 MAX_LOG_FILE = 10
@@ -68,6 +82,13 @@ class MainWindow(_MainWindow):
         super().setup_menu()
         self.view_menu.addAction(self.show_processes_manager_action)
 
+    def open_about(self):
+        # type: () -> None
+        """Open the about dialog."""
+        dlg = AboutDialog(self)
+        dlg.setAttribute(qt.Qt.WA_DeleteOnClose)
+        dlg.exec()
+
 
 log = logging.getLogger(__name__)
 
@@ -175,6 +196,47 @@ def widget_settings_dir():
     return os.path.join(data_dir(), "widgets")
 
 
+ABOUT_TEMPLATE = """\
+<center>
+<h4>{name}</h4>
+<p>tomwer version: {tomwer_version}</p>
+<p>nabu version: {nabu_version}</p>
+<p>nxtomomill version: {nxtomomill_version}</p>
+</center>
+"""
+
+
+class AboutDialog(qt.QDialog):
+    def __init__(self, parent=None, **kwargs) -> None:
+        super().__init__(parent, **kwargs)
+        layout = qt.QVBoxLayout()
+        label = qt.QLabel(self)
+
+        pixmap, _ = TomwerConfig.splash_screen()
+        pixmap = pixmap.scaled(150, 150)
+
+        label.setPixmap(pixmap)
+
+        layout.addWidget(label, qt.Qt.AlignCenter)
+
+        text = ABOUT_TEMPLATE.format(
+            name=escape("tomwer"),
+            tomwer_version=escape(tomwer.version.version),
+            nabu_version=escape(nabu.version if has_nabu else "not installed"),
+            nxtomomill_version=escape(
+                nxtomomill.version.version if has_nxtomomill else "not installed"
+            ),
+        )
+        text_label = qt.QLabel(text)
+        layout.addWidget(text_label, qt.Qt.AlignCenter)
+
+        buttons = qt.QDialogButtonBox(qt.QDialogButtonBox.Close, qt.Qt.Horizontal, self)
+        layout.addWidget(buttons)
+        buttons.rejected.connect(self.accept)
+        layout.setSizeConstraint(qt.QVBoxLayout.SetFixedSize)
+        self.setLayout(layout)
+
+
 class OMain(_OMain):
     config: TomwerConfig
     DefaultConfig = "tomwer.app.canvas_launcher.config.TomwerConfig"

tomwer/core/process/reconstruction/nabu/nabucommon.py

@@ -453,13 +453,18 @@ class _NabuBaseReconstructor:
         """
         # handle phase
         pag = False
+        ctf = False
         db = None
         if "phase" in config:
-            if (
+            pag = (
                 "method" in config["phase"]
                 and config["phase"]["method"] == _NabuPhaseMethod.PAGANIN.value
-            ):
-                pag = True
+            )
+            ctf = (
+                "method" in config["phase"]
+                and config["phase"]["method"] == _NabuPhaseMethod.CTF.value
+            )
+            if pag or ctf:
                 if "delta_beta" in config["phase"]:
                     if not numpy.isscalar(config["phase"]["delta_beta"]):
                         if len(config["phase"]["delta_beta"]) > 1:
@@ -473,7 +478,7 @@ class _NabuBaseReconstructor:
                     db = round(float(config["phase"]["delta_beta"]))
         # handle output
         if "output" in config:
-            _file_name = self._get_file_basename_reconstruction(pag=pag, db=db)
+            _file_name = self._get_file_basename_reconstruction(pag=pag, db=db, ctf=ctf)
             config["output"]["file_prefix"] = _file_name
             location = config["output"].get("location", None)
             if location not in ("", None):
@@ -565,7 +570,7 @@ class _NabuBaseReconstructor:
 
         return config
 
-    def _get_file_basename_reconstruction(self, pag, db):
+    def _get_file_basename_reconstruction(self, pag, db, ctf):
         """return created file base name"""
         raise NotImplementedError("Base class")
 

tomwer/core/process/reconstruction/nabu/nabuscores.py

@@ -235,18 +235,24 @@ class _Reconstructor(_NabuBaseReconstructor):
         - create the output directory if does not exist
         """
         pag = False
+        ctf = False
         db = None
         if "phase" in _config:
-            if "method" in _config["phase"] and _config["phase"]["method"] not in (
-                "",
-                utils._NabuPhaseMethod.NONE.value,
-            ):
+            phase_method = _config["phase"].get("method", "").lower()
+            if phase_method in ("pag", "paganin"):
                 pag = True
-                if "delta_beta" in _config["phase"]:
-                    db = round(float(_config["phase"]["delta_beta"]))
+            elif phase_method in ("ctf",):
+                ctf = True
+
+            if "delta_beta" in _config["phase"]:
+                db = round(float(_config["phase"]["delta_beta"]))
         if "output" in _config:
             _file_name = SingleSliceRunner.get_file_basename_reconstruction(
-                scan=self.scan, slice_index=self.slice_index, pag=pag, db=db
+                scan=self.scan,
+                slice_index=self.slice_index,
+                pag=pag,
+                db=db,
+                ctf=ctf,
             )
             _config["output"]["file_prefix"] = "cor_{}_{}".format(_file_name, cor)
             if _config["output"]["location"] not in ("", None):

tomwer/core/process/reconstruction/nabu/nabuslices.py

@@ -643,7 +643,9 @@ class SingleSliceRunner(_NabuBaseReconstructor):
             return super()._get_futures_slurm_callback(config_to_dump)
 
     @staticmethod
-    def get_file_basename_reconstruction(scan, pag, db, slice_index: Union[str, int]):
+    def get_file_basename_reconstruction(
+        scan, pag, ctf, db, slice_index: Union[str, int]
+    ):
         if pag:
             assert db is not None, "if paganin defined, db should not be None"
         if slice_index == "middle":
@@ -657,6 +659,8 @@ class SingleSliceRunner(_NabuBaseReconstructor):
         if slice_index is None:
             if pag:
                 return "_".join((basename + "pag", "db" + str(db).zfill(4)))
+            elif ctf:
+                return "_".join((basename + "ctf", "db" + str(db).zfill(4)))
             else:
                 return basename
         else:
@@ -668,11 +672,19 @@ class SingleSliceRunner(_NabuBaseReconstructor):
                         "db" + str(db).zfill(4),
                     )
                 )
+            elif ctf:
+                return "_".join(
+                    (
+                        basename + "slice_ctf",
+                        str(slice_index).zfill(4),
+                        "db" + str(db).zfill(4),
+                    )
+                )
             else:
                 return "_".join((basename + "slice", str(slice_index).zfill(4)))
 
     @docstring(_NabuBaseReconstructor)
-    def _get_file_basename_reconstruction(self, pag, db):
+    def _get_file_basename_reconstruction(self, pag, db, ctf):
         """
 
         :param TomwerScanBase scan: scan reconstructed
@@ -684,7 +696,7 @@ class SingleSliceRunner(_NabuBaseReconstructor):
         :return: basename of the file reconstructed (without any extension)
         """
         return self.get_file_basename_reconstruction(
-            scan=self.scan, db=db, pag=pag, slice_index=self.slice_index
+            scan=self.scan, db=db, pag=pag, slice_index=self.slice_index, ctf=ctf
         )
 
 

tomwer/core/process/reconstruction/nabu/nabuvolume.py

@@ -340,7 +340,7 @@ class VolumeRunner(_NabuBaseReconstructor):
         return config_s, extra_opts
 
     @docstring(_NabuBaseReconstructor)
-    def _get_file_basename_reconstruction(self, pag, db):
+    def _get_file_basename_reconstruction(self, pag, db, ctf):
         """
 
         :param TomwerScanBase scan: scan reconstructed
@@ -352,6 +352,7 @@ class VolumeRunner(_NabuBaseReconstructor):
         :return: basename of the file reconstructed (without any extension)
         """
         assert type(db) in (int, type(None))
+        assert not pag == ctf == True, "cannot ask for both pag and ctf active"
         if isinstance(self.scan, HDF5TomoScan):
             basename, _ = os.path.splitext(self.scan.master_file)
             basename = os.path.basename(basename)
@@ -359,6 +360,8 @@ class VolumeRunner(_NabuBaseReconstructor):
             basename = os.path.basename(self.scan.path)
         if pag:
             return "_".join((basename + "pag", "db" + str(db).zfill(4), "vol"))
+        elif ctf:
+            return "_".join((basename + "ctf", "db" + str(db).zfill(4), "vol"))
         else:
             return "_".join((basename, "vol"))
 

tomwer/core/process/reconstruction/nabu/utils.py

@@ -413,6 +413,7 @@ def nabu_std_err_has_error(errs: typing.Optional[bytes]):
         return (
             "warning" in line
             or "Warning" in line
+            or "deprecated" in line
             or line.replace(" ", "") == ""
             or "unable to load" in line
         )

tomwer/core/process/reconstruction/saaxis/saaxis.py

@@ -149,12 +149,16 @@ def one_slice_several_cor(
         output_dir = os.path.join(scan.path, DEFAULT_RECONS_FOLDER)
 
     db = None
-    pag = None
+    pag = False
+    ctf = False
     if "phase" in nabu_config:
-        if "method" in nabu_config["phase"] and nabu_config["phase"]["method"] != "":
-            if "delta_beta" in nabu_config["phase"]:
-                pag = True
-                db = round(float(nabu_config["phase"]["delta_beta"]))
+        phase_method = nabu_config["phase"].get("method", "").lower()
+        if phase_method in ("pag", "paganin"):
+            pag = True
+        elif phase_method in ("ctf",):
+            ctf = True
+        if "delta_beta" in nabu_config["phase"]:
+            db = round(float(nabu_config["phase"]["delta_beta"]))
 
     for cor, future_tomo_obj in future_tomo_objs.items():
         future_tomo_obj.results()
@@ -163,7 +167,11 @@ def one_slice_several_cor(
             continue
         else:
             _file_name = SingleSliceRunner.get_file_basename_reconstruction(
-                scan=scan, slice_index=slice_index, pag=pag, db=db
+                scan=scan,
+                slice_index=slice_index,
+                pag=pag,
+                db=db,
+                ctf=ctf,
             )
             file_prefix = "cor_{}_{}".format(_file_name, cor)
 

tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py

@@ -192,9 +192,13 @@ def one_slice_several_db(
             advancement.increaseAdvancement(1)
 
     pag = False
+    ctf = False
     if "phase" in config:
-        if "method" in config["phase"] and config["phase"]["method"] != "":
+        phase_method = config["phase"].get("method", "").lower()
+        if phase_method in ("pag", "paganin"):
             pag = True
+        elif phase_method in ("ctf",):
+            ctf = True
 
     # treat future.
     for db, future_tomo_obj_list in future_tomo_objs.items():
@@ -210,6 +214,7 @@ def one_slice_several_db(
             slice_index=slice_index,
             pag=pag,
             db=int(db) if db is not None else None,
+            ctf=ctf,
         )
         # retrieve url
         volume_identifier = nabu_utils.get_recons_volume_identifier(

tomwer/core/scan/edfscan.py

@@ -256,6 +256,10 @@ class EDFTomoScan(_tsEDFTomoScan, TomwerScanBase):
                                 indexStr = local_str.split("slice_pag_")[-1].split("_")[
                                     0
                                 ]
+                            elif "slice_ctf_" in local_str:
+                                indexStr = local_str.split("slice_ctf_")[-1].split("_")[
+                                    0
+                                ]
                             else:
                                 indexStr = local_str.split("slice_")[-1].split("_")[0]
                             if containsDigits(indexStr):

tomwer/core/scan/test/test_scan.py

@@ -90,38 +90,40 @@ class TestScanValidatorFindNabuFiles(unittest.TestCase):
 
     def test(self) -> None:
         for slice_index in (None, 1, 15):
-            for pag_db in (None, 100, 500):
-                file_name = (
-                    nabuslices.SingleSliceRunner.get_file_basename_reconstruction(
-                        slice_index=slice_index,
-                        scan=self.scan,
-                        pag=pag_db is not None,
-                        db=pag_db,
-                    )
-                )
-                for file_extension in ("npy", "npz", "hdf5"):
-                    with self.subTest(
-                        slice_index=slice_index,
-                        pag_db=pag_db,
-                        file_extension=file_extension,
-                    ):
-                        file_path = os.path.join(
-                            self.scan.path, file_name + "." + file_extension
+            for delta_beta in (None, 100, 500):
+                for pag in (True, False):
+                    for ctf in (True, False):
+                        file_name = nabuslices.SingleSliceRunner.get_file_basename_reconstruction(
+                            slice_index=slice_index,
+                            scan=self.scan,
+                            pag=pag if delta_beta is not None else False,
+                            ctf=ctf if delta_beta is not None else False,
+                            db=delta_beta,
                         )
-
-                        # simple context Manager which create the file
-                        # and remove it when leave
-                        with TestScanValidatorFindNabuFiles.FileCreator(file_path):
-                            n_to_discover = 1
-                            if slice_index is None:
-                                n_to_discover = 0
-                            self.assertEqual(
-                                len(
-                                    self.scan.get_reconstructions_paths(self.scan.path)
-                                ),
-                                n_to_discover,
+                        print("file_name is", file_name)
+                        with self.subTest(
+                            slice_index=slice_index,
+                            pag_db=delta_beta,
+                        ):
+                            file_path = os.path.join(
+                                self.scan.path, file_name + ".hdf5"
                             )
 
+                            # simple context Manager which create the file
+                            # and remove it when leave
+                            with TestScanValidatorFindNabuFiles.FileCreator(file_path):
+                                n_to_discover = 1
+                                if slice_index is None:
+                                    n_to_discover = 0
+                                self.assertEqual(
+                                    len(
+                                        self.scan.get_reconstructions_paths(
+                                            self.scan.path
+                                        )
+                                    ),
+                                    n_to_discover,
+                                )
+
 
 class TestScanValidatorFindPyHSTFiles(unittest.TestCase):
     """Function testing the getReconstructionsPaths function is correctly

tomwer/core/utils/char.py

@@ -39,3 +39,5 @@ DELTA_CHAR = (b"\xce\xb4").decode("utf-8")
 PSI_CHAR = (b"\xcf\x88").decode("utf-8")
 
 THETA_CHAR = (b"\xce\xb8").decode("utf-8")
+
+MU_CHAR = (b"\xce\xbc").decode("utf-8")

tomwer/gui/edit/imagekeyeditor.py

@@ -171,7 +171,7 @@ class _ImageKeyEditor(qt.QDialog):
         # mode selection
         self.layout().addWidget(qt.QLabel("selection mode"), 1, 0, 1, 1)
         self._selectionModeCB = qt.QComboBox(self)
-        for mode in ("slice", "list"):
+        for mode in ("range", "list"):
             self._selectionModeCB.addItem(mode)
         self._selectionModeCB.setCurrentIndex(self._selectionModeCB.findText("list"))
         self.layout().addWidget(self._selectionModeCB, 1, 1, 1, 1)
@@ -224,7 +224,7 @@ class _ImageKeyEditor(qt.QDialog):
     def getSelectionMode(self) -> str:
         """
 
-        :return: frame indexes selection mode. Can be 'slice' or 'list'
+        :return: frame indexes selection mode. Can be 'range' or 'list'
         """
         return self._selectionModeCB.currentText()
 
@@ -234,7 +234,7 @@ class _ImageKeyEditor(qt.QDialog):
         :return: list of indexes to be modified
         :rtype: list
         """
-        if self.getSelectionMode() == "slice":
+        if self.getSelectionMode() == "range":
             return self._selectionWidget.getSlice()
         elif self.getSelectionMode() == "list":
             return self._selectionWidget.getList()
@@ -321,7 +321,7 @@ class _ListSelection(qt.QWidget):
     def _selectFrames(self):
         if self._scan is None or self._scan() is None:
             _logger.warning(
-                "No scan set or has been moved. Unable to select " "slices from it."
+                "No scan set or has been moved. Unable to select slices from it."
             )
             return
         scan = self._scan()
@@ -375,11 +375,14 @@ class _EditionSelection(qt.QWidget):
     def setSelectionMode(self, mode: str) -> None:
         """
 
-        :param str mode: define indexes selection mode. Can be 'slice' or
+        :param str mode: define indexes selection mode. Can be 'range' or
                          'list'
         """
-        assert mode in ("slice", "list")
-        self._sliceSelection.setVisible(mode == "slice")
+        if mode == "slice":
+            # for backward compatibility (user can have .ows with old name)
+            mode = "range"
+        assert mode in ("range", "list")
+        self._sliceSelection.setVisible(mode == "range")
         self._listSelection.setVisible(mode == "list")
 
     def getList(self) -> list:

tomwer/gui/edit/nxtomoeditor.py

@@ -225,8 +225,10 @@ class NXtomoEditor(qt.QWidget):
             self._fieldOfViewCB.setCurrentIndex(idx)
 
     def _updateFlipped(self, scan):
-        self._xFlippedCB.setChecked(scan.x_flipped)
-        self._yFlippedCB.setChecked(scan.y_flipped)
+        if scan.x_flipped is not None:
+            self._xFlippedCB.setChecked(scan.x_flipped)
+        if scan.y_flipped is not None:
+            self._yFlippedCB.setChecked(scan.y_flipped)
 
     def _updateDistance(self, scan):
         self._distanceMetricEntry.setValue(scan.distance)

tomwer/gui/reconstruction/nabu/castvolume.py

@@ -66,30 +66,17 @@ class CastVolumeWidget(qt.QWidget):
         self.layout().addWidget(self._outputFileformatLabel, 1, 0, 1, 1)
         self._outputFileformatCB = QNabuFileFormatComboBox(self)
         self.layout().addWidget(self._outputFileformatCB, 1, 1, 1, 3)
-        # rescale percentiles
-        self._percentilesLabel = qt.QLabel("rescale percentiles")
-        self.layout().addWidget(self._percentilesLabel, 2, 0, 1, 1)
-        self._lowPercentileQSB = qt.QSpinBox(self)
-        self._lowPercentileQSB.setRange(0, 100)
-        self._lowPercentileQSB.setPrefix("min:")
-        self._lowPercentileQSB.setSuffix("%")
-        self._lowPercentileQSB.setValue(RESCALE_MIN_PERCENTILE)
-        self.layout().addWidget(self._lowPercentileQSB, 2, 1, 1, 1)
-        self._highPercentileQSB = qt.QSpinBox(self)
-        self._highPercentileQSB.setRange(0, 100)
-        self._highPercentileQSB.setPrefix("max:")
-        self._highPercentileQSB.setSuffix("%")
-        self._highPercentileQSB.setValue(RESCALE_MAX_PERCENTILE)
-        self.layout().addWidget(self._highPercentileQSB, 2, 2, 1, 1)
+
         # let the user provide min and max manually
         self._minMaxLabel = qt.QLabel("min max values")
-        self.layout().addWidget(self._minMaxLabel, 3, 0, 1, 1)
-        self._minMaxAuto = qt.QCheckBox("auto")
+        self.layout().addWidget(self._minMaxLabel, 2, 0, 1, 1)
+        self._minMaxAuto = qt.QCheckBox("auto with rescale from percentiles")
         self._minMaxAuto.setChecked(True)
         self._minMaxAuto.setToolTip(
             "If set to auto will try to get min/max pixel values from nabu histogram else will compute it. Otherwise will values provided by the user"
         )
-        self.layout().addWidget(self._minMaxAuto, 3, 1, 1, 1)
+        self.layout().addWidget(self._minMaxAuto, 2, 1, 1, 1)
+
         self._minPixValue = qt.QLineEdit("", self)
         self._minPixValue.setPlaceholderText("min")
         self._maxPixValue = qt.QLineEdit("", self)
@@ -98,14 +85,28 @@ class CastVolumeWidget(qt.QWidget):
         validator.setNotation(qt.QDoubleValidator.ScientificNotation)
         self._minPixValue.setValidator(validator)
         self._maxPixValue.setValidator(validator)
-        self.layout().addWidget(self._minPixValue, 3, 2, 1, 1)
-        self.layout().addWidget(self._maxPixValue, 3, 3, 1, 1)
+        self.layout().addWidget(self._minPixValue, 4, 2, 1, 1)
+        self.layout().addWidget(self._maxPixValue, 4, 3, 1, 1)
         self._minPixValue.setVisible(False)
         self._maxPixValue.setVisible(False)
-
+        # or from percentiles
+        self._percentilesLabel = qt.QLabel("rescale percentiles")
+        self.layout().addWidget(self._percentilesLabel, 3, 1, 1, 1)
+        self._lowPercentileQSB = qt.QSpinBox(self)
+        self._lowPercentileQSB.setRange(0, 100)
+        self._lowPercentileQSB.setPrefix("min:")
+        self._lowPercentileQSB.setSuffix("%")
+        self._lowPercentileQSB.setValue(RESCALE_MIN_PERCENTILE)
+        self.layout().addWidget(self._lowPercentileQSB, 3, 2, 1, 1)
+        self._highPercentileQSB = qt.QSpinBox(self)
+        self._highPercentileQSB.setRange(0, 100)
+        self._highPercentileQSB.setPrefix("max:")
+        self._highPercentileQSB.setSuffix("%")
+        self._highPercentileQSB.setValue(RESCALE_MAX_PERCENTILE)
+        self.layout().addWidget(self._highPercentileQSB, 3, 3, 1, 1)
         # save dir
         self._saveDirLabel = qt.QLabel("output directory", self)
-        self.layout().addWidget(self._saveDirLabel, 4, 0, 1, 1)
+        self.layout().addWidget(self._saveDirLabel, 5, 0, 1, 1)
         self._useDefaultSaveDirQCB = qt.QCheckBox("default", self)
         self._useDefaultSaveDirQCB.setToolTip(
             f"Default directory is: {DEFAULT_OUTPUT_DIR}"
@@ -114,7 +115,7 @@ class CastVolumeWidget(qt.QWidget):
             qt.QSizePolicy.Minimum, qt.QSizePolicy.Minimum
         )
         self._useDefaultSaveDirQCB.setChecked(True)
-        self.layout().addWidget(self._useDefaultSaveDirQCB, 4, 1, 1, 1)
+        self.layout().addWidget(self._useDefaultSaveDirQCB, 5, 1, 1, 1)
         self._saveDirQLE = QLFileSystem(text=DEFAULT_OUTPUT_DIR, parent=self)
         # force text because this is not a valid path
         self._saveDirQLE.setText(DEFAULT_OUTPUT_DIR)
@@ -125,11 +126,11 @@ class CastVolumeWidget(qt.QWidget):
             """
         )
         self._saveDirQLE.setVisible(False)
-        self.layout().addWidget(self._saveDirQLE, 4, 2, 1, 2)
+        self.layout().addWidget(self._saveDirQLE, 5, 2, 1, 2)
         # overwrite
         self._overwriteCB = qt.QCheckBox("overwrite", self)
         self._overwriteCB.setChecked(True)
-        self.layout().addWidget(self._overwriteCB, 5, 0, 1, 1)
+        self.layout().addWidget(self._overwriteCB, 6, 0, 1, 1)
         # spacer
         self._spacer = qt.QWidget(self)
         self._spacer.setSizePolicy(
@@ -275,3 +276,6 @@ class CastVolumeWidget(qt.QWidget):
     def _updatePixMinMaxVis(self, *args, **kwargs):
         self._minPixValue.setVisible(not self._minMaxAuto.isChecked())
         self._maxPixValue.setVisible(not self._minMaxAuto.isChecked())
+        self._percentilesLabel.setVisible(self._minMaxAuto.isChecked())
+        self._lowPercentileQSB.setVisible(self._minMaxAuto.isChecked())
+        self._highPercentileQSB.setVisible(self._minMaxAuto.isChecked())

tomwer/gui/reconstruction/nabu/nabuconfig/phase.py

@@ -147,7 +147,7 @@ class _NabuPhaseConfig(qt.QWidget, base._NabuStageConfigBase):
     @docstring(base._NabuStageConfigBase)
     def getConfiguration(self) -> dict:
         configuration = {"method": self.getMethod().value}
-        if self.getMethod() is _NabuPhaseMethod.PAGANIN:
+        if self.getMethod() in (_NabuPhaseMethod.PAGANIN, _NabuPhaseMethod.CTF):
             configuration.update(self._paganinOpts.getConfiguration())
         configuration.update(self._unsharpOpts.getConfiguration())
         configuration.update(self._ctfOpts.getConfiguration())

tomwer/gui/utils/unitsystem.py

@@ -34,6 +34,7 @@ __date__ = "21/09/2018"
 
 from silx.gui import qt
 from tomoscan.unitsystem import metricsystem
+from tomwer.core.utils.char import MU_CHAR
 import logging
 
 _logger = logging.getLogger(__name__)
@@ -61,6 +62,7 @@ class MetricEntry(qt.QWidget):
 
     _CONVERSION = {
         "nm": metricsystem.nanometer.value,
+        f"{MU_CHAR}m": metricsystem.micrometer.value,
         "mm": metricsystem.millimeter.value,
         "cm": metricsystem.centimeter.value,
         "m": metricsystem.meter.value,
@@ -69,7 +71,7 @@ class MetricEntry(qt.QWidget):
     def __init__(self, name, default_unit="m", parent=None):
         qt.QWidget.__init__(self, parent)
         assert type(default_unit) is str
-        assert default_unit in ("nm", "mm", "cm", "m")
+        assert default_unit in ("nm", "mm", "cm", "m", f"{MU_CHAR}m")
         self._base_unit = default_unit
 
         self.setLayout(qt.QHBoxLayout())
@@ -81,6 +83,7 @@ class MetricEntry(qt.QWidget):
 
         self._qcbUnit = qt.QComboBox(parent=self)
         self._qcbUnit.addItem("nm")
+        self._qcbUnit.addItem(f"{MU_CHAR}m")
         self._qcbUnit.addItem("mm")
         self._qcbUnit.addItem("cm")
         self._qcbUnit.addItem("m")

tomwer/gui/visualization/dataviewer.py

@@ -97,8 +97,10 @@ class DataViewer(qt.QMainWindow):
         self._controls = DisplayControl(parent=self)
         self._controlsDW = qt.QDockWidget(self)
         self._controlsDW.setWidget(self._controls)
-        self._controlsDW.setFeatures(qt.QDockWidget.DockWidgetMovable)
+        self._controlsDW.setWindowTitle("infos")
         self.addDockWidget(qt.Qt.TopDockWidgetArea, self._controlsDW)
+        self._controlsDW.setTitleBarWidget(qt.QWidget(self))
+        self._controlsDW.setFloating(False)
 
         # connect signal / slot
         self._controls.sigDisplayModeChanged.connect(self._updateDisplay)

tomwer/gui/visualization/diffviewer/diffviewer.py

@@ -358,6 +358,7 @@ class DiffFrameViewer(qt.QMainWindow):
         self._framesSelector.setContentsMargins(0, 0, 0, 0)
         self._framesSelector.layout().setContentsMargins(0, 0, 0, 0)
         self._framesSelectorDW = qt.QDockWidget(parent=self)
+        self._framesSelectorDW.setWindowTitle("inputs")
         self._framesSelectorDW.setWidget(self._framesSelector)
         self._framesSelectorDW.setFeatures(qt.QDockWidget.DockWidgetMovable)
         self.addDockWidget(qt.Qt.TopDockWidgetArea, self._framesSelectorDW)
@@ -369,6 +370,7 @@ class DiffFrameViewer(qt.QMainWindow):
         self._shiftDW = qt.QDockWidget(parent=self)
         self._shiftDW.setWidget(self._shiftsWidget)
         self._shiftDW.setFeatures(qt.QDockWidget.DockWidgetMovable)
+        self._shiftDW.setWindowTitle("shifts")
         self.addDockWidget(qt.Qt.BottomDockWidgetArea, self._shiftDW)
 
         # define central widget
@@ -387,13 +389,6 @@ class DiffFrameViewer(qt.QMainWindow):
         toolbar.setFloatable(False)
         self.addToolBar(qt.Qt.TopToolBarArea, toolbar)
 
-        # add filtering
-        style = qt.QApplication.instance().style()
-        icon = style.standardIcon(qt.QStyle.SP_DialogResetButton)
-        self._clearAction = qt.QAction(icon, "Clear", toolbar)
-        toolbar.addAction(self._clearAction)
-        self._clearAction.triggered.connect(self.clear)
-
         # set up
         self._mainWidget.setAutoResetZoom(False)
         self._shiftsWidget.setFocus(qt.Qt.OtherFocusReason)
@@ -492,10 +487,6 @@ class DiffFrameViewer(qt.QMainWindow):
         )
         self._mainWidget.setImage2(shifted_image)
 
-    def clear(self):
-        self._framesSelector.clear()
-        self._mainWidget.getPlot().clear()
-
     def _frameShiftsChanged(self):
         self._resetLeftFrame()
         self._resetRightFrame()

tomwer/resources/gui/illustrations/ctf_z1.svg

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    id="svg8"
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+   inkscape:version="1.0.2 (e86c870879, 2021-01-15)"
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-   inkscape:export-filename="/media/payno/830add5c-f5d7-4db2-875e-03be4f0a67f0/dev/tomography/tomwer/tomwer/resources/gui/illustrations/ctf_z1.png"
+   inkscape:export-filename="/home/payno/dev/tomo/tomwer/tomwer/resources/gui/illustrations/ctf_z1.png"
    inkscape:export-xdpi="134.50999"
    inkscape:export-ydpi="134.50999">
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      inkscape:zoom="3.959798"
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-     inkscape:cy="65.732653"
+     inkscape:cx="57.456907"
+     inkscape:cy="67.584462"
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+     inkscape:current-layer="layer1"
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      units="px"
      width="200px"
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-     inkscape:window-height="1136"
-     inkscape:window-x="72"
+     inkscape:window-width="1920"
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+     inkscape:window-maximized="1"
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+       xml:space="preserve"
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 </svg>

tomwer/version.py

@@ -77,9 +77,9 @@ RELEASE_LEVEL_VALUE = {
 
 MAJOR = 1
 MINOR = 1
-MICRO = 0
-RELEV = "rc"  # <16
-SERIAL = 6  # <16
+MICRO = 1
+RELEV = "final"  # <16
+SERIAL = 7  # <16
 
 date = __date__
 

{tomwer-1.1.0rc6.dist-info → tomwer-1.1.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: tomwer
-Version: 1.1.0rc6
+Version: 1.1.1
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: data analysis unit

{tomwer-1.1.0rc6.dist-info → tomwer-1.1.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-tomwer-1.1.0rc6-py3.8-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
+tomwer-1.1.1-py3.8-nspkg.pth,sha256=xeeGR3TjdoVxdFeF6T-zSwZWh6Et--EYuPWu67LxL_c,574
 orangecontrib/tomwer/__init__.py,sha256=B3VLqV-jCha0MgRp-9_W6EbAjEFnFz6FvgtqHGA6EoQ,147
 orangecontrib/tomwer/state_summary.py,sha256=3wnJdLg9jiXSM8iTP8SxL1a92bnntxO9RhBZ71z5dY4,1710
 orangecontrib/tomwer/orange/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -15,7 +15,7 @@ orangecontrib/tomwer/widgets/__init__.py,sha256=IwY85ur-TZUdRH1igCEfMiUKFvu9cmbd
 orangecontrib/tomwer/widgets/utils.py,sha256=zGfY5XfrLdD2awrtItLYJjFRE-FCCwhPs_QJaEA73X0,2339
 orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py,sha256=IyP11MMwbwC3BO3gWTEqwizqIqKBnOni96rxlxuUPYQ,8957
 orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py,sha256=T9koZYPIEvx6HOOSP-tn-bHN6vMDmIWHYesIUcvwPTE,4010
-orangecontrib/tomwer/widgets/cluster/__init__.py,sha256=nlIBw2R2J6EBiB5tuMb6BbCxxej-bSqVkqVlPqhG0vY,1606
+orangecontrib/tomwer/widgets/cluster/__init__.py,sha256=HyTijuJFHFyl5n94nCWREgTxbE3olYsYLAFshjTMNN4,1614
 orangecontrib/tomwer/widgets/cluster/icons/slurm.png,sha256=C-YBLwXCnh0oo4nvEt80WxX_jKYGUAFpWMUSlzt6ke0,1995
 orangecontrib/tomwer/widgets/cluster/icons/slurm.svg,sha256=9LqiU88NH3ACxtZ8A7gTm-C_0ACR8iq0k_N2W1IFf9Q,9790
 orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.png,sha256=sxH1V20s0JZPTCq82Fizz8Q9RHXwviapdStgZT8GBIM,3212
@@ -27,7 +27,7 @@ orangecontrib/tomwer/widgets/control/DataSelectorOW.py,sha256=22_DCUPiFCWoA27Mg6
 orangecontrib/tomwer/widgets/control/DataTransfertOW.py,sha256=K2LVVDACO2hDXFmX43DxUOBqxiHdFYVKvxEC1PxKgoo,7302
 orangecontrib/tomwer/widgets/control/DataValidatorOW.py,sha256=-bgP7ArsSN77LECJjjuEIdplmmwaC5Fx16pVx-fQLEI,7197
 orangecontrib/tomwer/widgets/control/DataWatcherOW.py,sha256=IoDoXy1unewG6UmvMwa2U24pQjy6VSVep7bYtLDEEjo,7326
-orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py,sha256=sWPEvFEZdzSHQtj6sNKVzF3iAL1pcwDOo88lCqlDfvA,9133
+orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py,sha256=Tb0ux5BqNvgIcPzeVo8Owx5hno5p4KggO5bUXJQg4EM,9099
 orangecontrib/tomwer/widgets/control/FilterOW.py,sha256=vSDr8u3_oR8xl6s5jQGt-DmyJwFOxtq72rBvBqlJA7U,4577
 orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py,sha256=kJPFQBHiqbi05U62UzDFgu6b5vPJZbO79XeAu_PyoIM,3323
 orangecontrib/tomwer/widgets/control/NXTomomillOW.py,sha256=CalszjDcaSjYv0GMAl6YrMAQUtGJXf8nGBmeAo44FB4,12259
@@ -118,8 +118,8 @@ orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py,sha256=02qpJUdjr
 orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py,sha256=IvE4-yDaktCUOnq8NnQB6jHsjddynHlOHSkh_1504Gk,10518
 orangecontrib/tomwer/widgets/reconstruction/NabuOW.py,sha256=OHVqsEr48vIbpNLNaQZrgL3pEn_FvEQJ5uryajzQon0,10884
 orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py,sha256=ZtKVU804Aj9RdZLYsNzOylCo02bQNJ1mFt8lEu1QsB8,17622
-orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py,sha256=s4zFYBalUQ642_2-B-4IuQn34JqCuSpwm1fyk9czebs,17679
-orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py,sha256=3y1rdfIsRGmwYVqX6frQvIiHtrWWOFPspjnjk5I5bjw,14573
+orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py,sha256=GPMR0dbv3t0FdlCXM_gLNxZDto-QULjlOEiDgqu3KYE,17852
+orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py,sha256=tmLBFWa9oBT1335t-Ta2otM5ndhxoLo3AtSO2nW1zqo,14636
 orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py,sha256=Tx6rXjjrYN8JawMNZFr-AGr1upa0GX_-aIuoU6s5XMM,10845
 orangecontrib/tomwer/widgets/reconstruction/TofuOW.py,sha256=X889aNXwB-h5mTa9XuXSX35j15LZvr7DCnP8nfjuCsk,7820
 orangecontrib/tomwer/widgets/reconstruction/__init__.py,sha256=lgfP-eyIPCwy2R5FVl7uBcO17ESpLbkB1YSvieFRqq4,1601
@@ -151,7 +151,7 @@ orangecontrib/tomwer/widgets/reconstruction/icons/sadeltabeta.svg,sha256=gQQFb5U
 orangecontrib/tomwer/widgets/reconstruction/icons/tomogui.png,sha256=qg7SZMRY3QjK-tteyoN0ToU5gNs1ZflkwzUK5kVVVQI,6846
 orangecontrib/tomwer/widgets/reconstruction/icons/tomwer.png,sha256=M9IWm_TDKlSA6PZ-FPblo2k6PH-kkT2d0ASRvZ-pM_8,8992
 orangecontrib/tomwer/widgets/visualization/DataViewerOW.py,sha256=T8rse9FIWbM6LPOZvkcKDuwlD1aSZYGrKIwg3S-3Xuw,5199
-orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py,sha256=H7lrvVkh3RrHXKHClt9e9GZNeZJ2vumWnEaxKXy5SZg,2874
+orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py,sha256=6XQ7i8XmrbKeB1iodyHzQlhahHHfOUngPevrh608ohU,2874
 orangecontrib/tomwer/widgets/visualization/LivesliceOW.py,sha256=g2QQNI2hfcN0w2YCTOd4VjNwqMiOG3UcIUGtJkrJnXo,3171
 orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py,sha256=KelMKYUL-rIq_Vi_1sylUu8P3EWsnY0HLilJcZdiwLE,1949
 orangecontrib/tomwer/widgets/visualization/RadioStackOW.py,sha256=_FYjyXCLnfBnEPSEvYzyktpC3XT_thIte9Y6dF3dhn8,3392
@@ -182,7 +182,7 @@ orangecontrib/tomwer/widgets/visualization/icons/volumeviewer.svg,sha256=2uT9_px
 tomwer/__init__.py,sha256=UkYK_aDTsg7Qfv3IbRaQZ8lm9hRD93U7fLzbvXoLwn4,1745
 tomwer/__main__.py,sha256=r6aj9eSuARnS6tFeDalCx5EM6L5RsD4iW2qfleUQi-k,5962
 tomwer/utils.py,sha256=UVEewsSmUpPXkUSP0zwg-sHZ5HfU9AZNPxKdwYjL7h0,8544
-tomwer/version.py,sha256=8019ZsqIRlrfOSMifHvznxOfcsXzeeci-Ra9cUOeSX0,4383
+tomwer/version.py,sha256=hOyRtOJbmMFuNlxcmKfH4yrrayUl0Bc87Qj59p5r6gM,4386
 tomwer/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/axis.py,sha256=m8-fOYcX8dRWHa-EjOO9cKiW9nBl7Z5nhOi5d4YovSQ,6473
 tomwer/app/canvas.py,sha256=TVh-E_LnCzfDVYL_r0Hy5KC47nJ4Bk_L6XVurXaab4s,1377
@@ -207,7 +207,7 @@ tomwer/app/stopdatalistener.py,sha256=zuVIEkfXVrBnKf8cmpUBUg0xrsdnQ2fjuJwUk_FnyK
 tomwer/app/canvas_launcher/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/app/canvas_launcher/config.py,sha256=aF9VlavqSKgImpFOKSdazfaWzzhY6LfjYn_HWgmEygU,7251
 tomwer/app/canvas_launcher/environ.py,sha256=pOJzQ612T0AA4mtGmCoB_YGo9fnxpDOBRuMEFiaMQl8,2501
-tomwer/app/canvas_launcher/mainwindow.py,sha256=YMiPIFQNPbvm50IzBBXXRexJ4j4Kn5sGun6T6OMYYv8,10617
+tomwer/app/canvas_launcher/mainwindow.py,sha256=Tw6k1epW48D-WD8VEsHzIhjRSKMQPpS8rNpEqxP0O6c,12322
 tomwer/app/canvas_launcher/splash.py,sha256=a2s9UwfEu4qenTUn9z-2g-tcAQNFOAgidmeUPFM70Gs,559
 tomwer/app/canvas_launcher/widgetsscheme.py,sha256=ynznd04N5RteRLWPC9kNVJifM_-WV1yTelIT0LqzmjI,2816
 tomwer/core/__init__.py,sha256=lLfviCLw9VdT6SQ_9eYhqFe8QtUA-Dv-JDGpgxQ8Yzs,1373
@@ -271,23 +271,23 @@ tomwer/core/process/reconstruction/lamino/__init__.py,sha256=EH-YNlONEw1v6UU5ByD
 tomwer/core/process/reconstruction/lamino/tofu.py,sha256=0x3v2QB7nzPAVjBqFrPpYh4MiZQlkiUv3BD6E-Gs_BM,34544
 tomwer/core/process/reconstruction/nabu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/core/process/reconstruction/nabu/castvolume.py,sha256=LuJ-wlXi0LXgC9aFYfnGl1P-CWGHxEH7j2qHyNJYQww,10072
-tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=wm0sKpjXy4_HmJX4KSyFAEjBnkbCGBIxSfgydpreCtM,21491
-tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=iuR86dFSasPWrR3hygTm5bcO446FcId0b1kIMuEEOIQ,11186
-tomwer/core/process/reconstruction/nabu/nabuslices.py,sha256=Ym7EglO0OseHHssuxNgPBVqgCcBwkoqqVwL4CIO4mX0,29024
-tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=V2cQhIifxySApAwXl8pmo0D-Ht0p6b91Z-18XRQ9mZs,16124
+tomwer/core/process/reconstruction/nabu/nabucommon.py,sha256=t9FnjhHLbYKizpG2mgFxHsvp0qTQyFgXAmRqjyRUh9g,21681
+tomwer/core/process/reconstruction/nabu/nabuscores.py,sha256=1cNBEElw_XDoYQueh882la62QWEdn7WLjAQxN-Ualy8,11294
+tomwer/core/process/reconstruction/nabu/nabuslices.py,sha256=x1EyvTKQYuCSMLSex-yI1GVLPE5-_fXMm3_OrzEjZUU,29421
+tomwer/core/process/reconstruction/nabu/nabuvolume.py,sha256=p9yKpCMA2uF7IULnU0zvSwDUauc7qqfD8p1GxMWEr4U,16307
 tomwer/core/process/reconstruction/nabu/settings.py,sha256=bH5bW88tikwGQXIBNVznefXNldlClhKk-LhhU3qOcO0,2264
 tomwer/core/process/reconstruction/nabu/slurm.py,sha256=MXcQY9z1PZXr0x7Aj8brp1f6wFPV6jzECEQLEjEDBQU,921
 tomwer/core/process/reconstruction/nabu/target.py,sha256=_Z4gViprjR3Vm4KASqsASStLA9GM1wTyoi3Pg0PUSeg,1481
-tomwer/core/process/reconstruction/nabu/utils.py,sha256=GtRZiJ114l_5yWRbeVvkAKS_VdUk-2Wrxul6pd_ERlY,13909
+tomwer/core/process/reconstruction/nabu/utils.py,sha256=qcsxxc63uBoq7pO2uNChgtI6LB2_9PoJxDOGmdOVRV8,13945
 tomwer/core/process/reconstruction/normalization/__init__.py,sha256=iyTlaMg14Q1eXFr8ICZovTjNd8gt6oe4e3T-6Ldo25k,128
 tomwer/core/process/reconstruction/normalization/normalization.py,sha256=uS8ueUfwbyIW8k6boHlJ7UOWiJhLTubac0cXci1N7SQ,13088
 tomwer/core/process/reconstruction/normalization/params.py,sha256=EwYypv75SkqnqPRIZqnm7k8VdwpBmaJszYI5qaCpG5Y,4790
 tomwer/core/process/reconstruction/saaxis/__init__.py,sha256=qCVB1LY-XBlWNEJDB5Lxy2zCV3mrhX6frr2QCcWHLw0,93
 tomwer/core/process/reconstruction/saaxis/params.py,sha256=vGSIc41Ve-cHdCQBsV0vsOyuO9ZoXrZq_keSu-tOEOI,5624
-tomwer/core/process/reconstruction/saaxis/saaxis.py,sha256=JdJNDgNLBYXl8QvQhzRkRNRtsgnHJcXGsnKFPqe6EMw,28417
+tomwer/core/process/reconstruction/saaxis/saaxis.py,sha256=W58ubkdI0U1LhyW_WoJFGzDqkWLAPwbn1dGm0f9YxIw,28589
 tomwer/core/process/reconstruction/sadeltabeta/__init__.py,sha256=WY0sluyFXKiq8QeD3KvnGSpl0is7GL4F2JuBaBZNMYY,108
 tomwer/core/process/reconstruction/sadeltabeta/params.py,sha256=DEE4ObLtCJ76QrhD4pisXecAdqELI0OtN_B-zm2RMHs,4106
-tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py,sha256=70bCjPhG1zSyYNSLz3lupULiwmPwvSRQHSTS5jw7R50,22964
+tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py,sha256=Npx7_Sv2oZWK7FKT3zzmitxzdMI72LyX9p8lbDygVAc,23099
 tomwer/core/process/reconstruction/scores/__init__.py,sha256=T7RRLNV0Zk6xK1WRlTP8XtyLkGkS16H_PJi82T5QePw,282
 tomwer/core/process/reconstruction/scores/params.py,sha256=2ZCoe-0ME3t40tOGqStuqcwLZIgd09eoVax0d5Ib3bk,6963
 tomwer/core/process/reconstruction/scores/scores.py,sha256=o3HyUpS_iwwbCwWOANITgx9WaF2LYK-8Gv37Oj80qHg,6994
@@ -326,7 +326,7 @@ tomwer/core/process/visualization/slicestack.py,sha256=wKxjS7oFLbC0PRXtQuBHRjs4H
 tomwer/core/process/visualization/volumeviewer.py,sha256=9Y3z--FDPm_LBPgbFywGOxqve3vz9UHoV-gXZ6b9-rg,1520
 tomwer/core/scan/__init__.py,sha256=V1TPi41mS3b6jskdiNqgnKYvRHZg1x1KmEClQ3hUmu8,1392
 tomwer/core/scan/blissscan.py,sha256=hQi91vaQCg-uZBhYQ6mSooLkB2e9k0refqR-Xiyd51Q,8271
-tomwer/core/scan/edfscan.py,sha256=gG22uRLU3V2nyMqpZC_obf5GW6OjQ9BXDVm5OhQxXUc,22072
+tomwer/core/scan/edfscan.py,sha256=5bkNzPQhJLbEJf4tdikeRs7KEou2sEsWGAST3uZbqhA,22293
 tomwer/core/scan/futurescan.py,sha256=uTcEa3BR2Tb3pMct9Ve7TeeUL9AEOjdKNejL4-uR1Tk,212
 tomwer/core/scan/hdf5scan.py,sha256=RMRphkCW90wUdvBt7gByww8VtocstjWT5hmqTc5BaJw,18707
 tomwer/core/scan/scanbase.py,sha256=ynplFca9w70SEvBF8jcpWkLpyC8jkwihJS0Roqe4WXo,31415
@@ -336,14 +336,14 @@ tomwer/core/scan/test/test_edf.py,sha256=VbgL6fMKccU9Ca2RuE0jc8iP8rIgHL_N0nCV8ay
 tomwer/core/scan/test/test_future_scan.py,sha256=vXzjfsRY0m3_zZmdl7X-GfHjCbn-JF1vsTZe__tCpjw,2165
 tomwer/core/scan/test/test_h5.py,sha256=AriX-b_vSOBkGWhWDEzLRjxyvNRN1Re7ILNzF_1OynQ,4388
 tomwer/core/scan/test/test_process_registration.py,sha256=_-tCc8Y3v6eC-Pmw45ihMk0yTEkTafmDv35QadaP5sc,5194
-tomwer/core/scan/test/test_scan.py,sha256=u6pHuMRYzuyUZbGspsM_itc-HjRXnc9M1qEoCWQ81Zk,14684
+tomwer/core/scan/test/test_scan.py,sha256=y_YY2QvKqKnYslHqti6NRvP-ZQH6Zft0Raqw7QNkfM4,14957
 tomwer/core/test/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/core/test/test_lamino.py,sha256=2-uCBIBiKldMHY5gkDnVSECKhDbwb6yiVgLOo0ooMCQ,3489
 tomwer/core/test/test_scanutils.py,sha256=Dg9dIGxjqpo42zV7or-gnaUVcTf2x8BvtrKNME4uekA,2151
 tomwer/core/test/test_utils.py,sha256=q_IPM_1NCyVoFDI96Tzpy6YMIxHqGYMT0XBrogZD3lA,10673
 tomwer/core/utils/Singleton.py,sha256=57g7-B2eqyrneT8DQ2Tzqha0bg-mcdSdaPtOjhsGWVc,1559
 tomwer/core/utils/__init__.py,sha256=0xymzqHO1oEdOnLkzeRCyeILhKI6hcIrM0rMh-fbxmc,13486
-tomwer/core/utils/char.py,sha256=efnwozk0NThJ_dOieytB9aCVXe0wOQ5KwAEer8kTeXE,1632
+tomwer/core/utils/char.py,sha256=VxNJ6Les9hZzVQz-gkPexWjn2h_J-XY3FiikwdgdGd0,1673
 tomwer/core/utils/deprecation.py,sha256=2eIFwhOR08afzhF8dolSoM5M8ScPAj_JB9CT-QXN954,4714
 tomwer/core/utils/ftseriesutils.py,sha256=urIZfVN0j0PAD3RHVAzBMaMNAN-sFudxFKNZ8cCKWXs,2382
 tomwer/core/utils/gpu.py,sha256=7s1LpN7e5ZTf1lqx0OLo-R45oE1L0JWmnLe2Hmhph6M,1812
@@ -421,8 +421,8 @@ tomwer/gui/debugtools/datasetgenerator.py,sha256=2ZOFTz0nBh6ar7QZYHpytDJq8IqFrdq
 tomwer/gui/debugtools/objectinspector.py,sha256=-RO_DSCnIYJ1BTSXEhgrbztmiag6TM6jFG2Z8RSnJMY,2978
 tomwer/gui/edit/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/gui/edit/dkrfpatch.py,sha256=_TAmUGEshF-Z_EzwDHtgs5whLPoc321IURwJxahmSog,17728
-tomwer/gui/edit/imagekeyeditor.py,sha256=03DIefWobiKMRnUezngFLeiAPPfhPii3G58s1c7DB0k,29564
-tomwer/gui/edit/nxtomoeditor.py,sha256=QRKneDleZ9v8TxNT32gvyjEh0mjTUmXIvR002TD1NEs,17411
+tomwer/gui/edit/imagekeyeditor.py,sha256=TEanI9q-f_F724KlK0mDZV1u0RWdp4MvgnnEC9nky2E,29692
+tomwer/gui/edit/nxtomoeditor.py,sha256=Gb2_dfVbQwgT2lm1OWjp28TxrTNn72NwMjwGc2OLd60,17497
 tomwer/gui/edit/test/__init__.py,sha256=OLK9ip_LryBfM_L40MReqjvJS3wdbWP_CpnBeD1NQTA,1368
 tomwer/gui/edit/test/test_dkrf_patch.py,sha256=1U7FnhAsRJ4raM0pinA1BxdtqSdpdUTHiUY5ddTcKH8,8025
 tomwer/gui/edit/test/test_image_key_editor.py,sha256=0621Zuft7KD2d5VLjQOm4JWMRER0FXP-m2RfHURoh0s,5960
@@ -446,7 +446,7 @@ tomwer/gui/reconstruction/lamino/tofu/tofuexpert.py,sha256=0TNajtIKAdRj7Y_oK5d8r
 tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py,sha256=0DFuSMFU983LNwEnWXqEEvjjwIsih6n67-KqrEvRjr8,29446
 tomwer/gui/reconstruction/nabu/__init__.py,sha256=v2WxaBpu2zpGu7DEV96zaKAtHgRlcpORuAG2S0iF9O0,44
 tomwer/gui/reconstruction/nabu/action.py,sha256=t_L_sOkNYApqLGCNmbucq9IVd1XijycKhZdh262vO88,3889
-tomwer/gui/reconstruction/nabu/castvolume.py,sha256=4qs1R6JVJxZkk_-SrCCwuZ09qqcZ8HjayRhhi-x1eAk,12295
+tomwer/gui/reconstruction/nabu/castvolume.py,sha256=DWoubbxvHYf6FeOswWLix84BbUMjeHpIQvn0L4Q2O2I,12543
 tomwer/gui/reconstruction/nabu/check.py,sha256=4m1zbiak462UxKlKz_rKa1xarK-_VVC4p6ZE8JKYh9Y,4731
 tomwer/gui/reconstruction/nabu/nabuflow.py,sha256=EqiBtxfXqOE7umcWw7kShbfs0Be12XbBzdTSQEyWX-0,17194
 tomwer/gui/reconstruction/nabu/slices.py,sha256=Ndqn_f9vf83tdPh2x1ucaR7Xl5HIwpxpZNNvSnFE2BM,23443
@@ -457,7 +457,7 @@ tomwer/gui/reconstruction/nabu/nabuconfig/base.py,sha256=X8aF0_DVPfyVf19kgjpyjcC
 tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py,sha256=yCJ-R3QHvplaqyTE10trEQHCDK_VgWIjZ6fZ2U__LtE,13082
 tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py,sha256=euetzzztzrcTSG6jsPyQgdY6O5tWWRVqasVka8bgBjU,11490
 tomwer/gui/reconstruction/nabu/nabuconfig/output.py,sha256=x3z3yj1OySj8aoeG4VqwaxVi2hWvfMVs44Ms4AyVzOw,9865
-tomwer/gui/reconstruction/nabu/nabuconfig/phase.py,sha256=qIs2VTm-3kTBWEjfXUi8GWcuAV4-ARmNs6ubIFeSRAk,15229
+tomwer/gui/reconstruction/nabu/nabuconfig/phase.py,sha256=z-qM-dbofF0xl_Cl7CMIpOPCNnL67UiH2U75PwWoDjM,15253
 tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py,sha256=hPk49mkuI8En4BIc70O8R9vDE9JuExsWQ1BtWdt_TqA,22714
 tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py,sha256=w_SosHK8Bp1iIiwOJ5KRAQMmYKYxUsQKoPewX9q8mkk,37357
 tomwer/gui/reconstruction/normalization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -495,14 +495,14 @@ tomwer/gui/utils/scandescription.py,sha256=KZfRm57UIqFgP3xJgpHFifJETQKN_0TuWv8Wi
 tomwer/gui/utils/scrollarea.py,sha256=TDWSb_xsqX1vWaeWYl-yNB_-ok5QkYs9bjIOm2vL1qk,2954
 tomwer/gui/utils/slider.py,sha256=TJK_IMnBst5evDky26YeSDI0ns4mXBNoXHiQW-K_9Yc,3467
 tomwer/gui/utils/splashscreen.py,sha256=7g33O-V1QqpU4cu-ki4ZJxdchTpWC15bKSGepfmteBQ,1857
-tomwer/gui/utils/unitsystem.py,sha256=t1DW3PHaHG987s8X2Fp_evp3a5XzHyV2vximv_Sbo8E,6162
+tomwer/gui/utils/unitsystem.py,sha256=wRZ_T1tFTAXqaGuffcFksAWey5qk2Ggi2WD-oJcsjc4,6319
 tomwer/gui/utils/vignettes.py,sha256=Y8aqnanN5U5syXs0MPoyYt_tCfflybCyC2hSxDEePSw,12980
 tomwer/gui/utils/waiterthread.py,sha256=-3rgoIV461MnsXH0xCFLaYOWhPWOkFm-oD2ybfBde1Q,1843
 tomwer/gui/utils/lineselector/__init__.py,sha256=GZ847ef5X2wk_sAHxg6h24TarPYmb4NZjQI3jjkc7jE,75
 tomwer/gui/utils/lineselector/lineselection.py,sha256=q9yrpH6cpDEKqgOhJL5Mvq46ifFlgNil5kyikgC936E,2614
 tomwer/gui/utils/lineselector/lineselector.py,sha256=VueUHAiLB87uVCYkDyybDGWJs3ajLQdfj4KeznD8Z1Q,8228
 tomwer/gui/visualization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tomwer/gui/visualization/dataviewer.py,sha256=8p4BK7VWbchxZdIowee6Yr25LnYiGlYSQdGKwlCZ37g,24528
+tomwer/gui/visualization/dataviewer.py,sha256=tpEHUDMPqW3fNBa7Suhos_hbIBDPBlZo7lXDBXcmhxk,24611
 tomwer/gui/visualization/nxtomometadata.py,sha256=XSmTvYm3PBbWnP4ux89p1jclqoFYmylATXGZfljHsQE,682
 tomwer/gui/visualization/reconstructionparameters.py,sha256=AQt-uogaxsxXd9ooOWGolOUDsmVOVxsfKBd0MAPuMco,15392
 tomwer/gui/visualization/scanoverview.py,sha256=zV9JGadh1NWjSbOMI-cMSkFj9MCJWjXkOt9JWR46Fbc,8421
@@ -511,7 +511,7 @@ tomwer/gui/visualization/tomoobjoverview.py,sha256=X98Dg0Sml8ifTG7oYgWGuCDBBH4Hl
 tomwer/gui/visualization/volumeoverview.py,sha256=KyCPM0b4StOTCqvyHfCwf8_eC__xFtekdyY6w_pPZkc,2489
 tomwer/gui/visualization/volumeviewer.py,sha256=fi-rElfWlqyBYvi02iURZEJLb_xflnY_pr3VgzZtEhM,16074
 tomwer/gui/visualization/diffviewer/__init__.py,sha256=rZ7qOTfAChU3FouCdkZllXT9ZZqTdo1XhLZMfmOqUAE,39
-tomwer/gui/visualization/diffviewer/diffviewer.py,sha256=pbTzyUo82mCAigJi8wrFQ9y5RYepyd9brNQRsYKHJEg,21381
+tomwer/gui/visualization/diffviewer/diffviewer.py,sha256=5tZ9sTy9MwVlCuUryN03wQOWEzWddpshiYkaiuDFPLY,21076
 tomwer/gui/visualization/diffviewer/shiftwidget.py,sha256=--JvNXU3Si-fWtO1SfzhQKY8YVCymNez-yn47SrFsA4,20938
 tomwer/gui/visualization/test/__init__.py,sha256=nRVmFmNtdzN5PElEurDCb9pDulWIha-fLu-VX8hNn5A,1368
 tomwer/gui/visualization/test/test_dataviewer.py,sha256=NuYVFMX1yBncrcUI4jMCvj-VOcZO8_1uMz3uNW2SSXY,2444
@@ -622,8 +622,8 @@ tomwer/resources/gui/icons/vignettes.png,sha256=IrRLh0W4kr6qIfbAgMxE7B4UKvbG5zAg
 tomwer/resources/gui/icons/vignettes.svg,sha256=qn_jgL_q4P0Hzo2jODmSxmZNzN8eQMoQ3yyagCWM904,3252
 tomwer/resources/gui/icons/warning.png,sha256=6uxDzFf5QSf5BBVBrBL_VAOzaFzV-9Ext52lsue6HPs,2348
 tomwer/resources/gui/icons/warning.svg,sha256=YjFMio-qMTmEJTnJzj3twnuGErvqK0LSj5x44YIdEBw,1462
-tomwer/resources/gui/illustrations/ctf_z1.png,sha256=uHJDWZ7KSr2-kVqZ72CoDUjwy_udIUTQsIoQiYhfcd8,8247
-tomwer/resources/gui/illustrations/ctf_z1.svg,sha256=RQ_rBtWwjgjK9mNv_lz2gyFebVDwk6U_cTsfzvi2Ifg,42716
+tomwer/resources/gui/illustrations/ctf_z1.png,sha256=UckofrAS4A_I8OI2zu7T_wNHO-Vj8Jp1nHJy8oqMROE,7752
+tomwer/resources/gui/illustrations/ctf_z1.svg,sha256=NgbH8MgXda4ywt5c6j162BDOMDvKUK6oGDJY_M9AWaU,36320
 tomwer/resources/gui/illustrations/flow_down.png,sha256=lWv8HaEaiQ2JSjF0tS1IlcyoWOJD_J0TcTVhzENACno,551
 tomwer/resources/gui/illustrations/flow_down.svg,sha256=WNLyBbTnJqohneGt6bP5W1UafYxTGdtSR16KpwwMBDk,3987
 tomwer/resources/gui/illustrations/flow_right.png,sha256=1tuAYv7EDKtZNAssdEGuHZMJC2kWDvVVGVT030q9hHc,531
@@ -698,10 +698,10 @@ tomwer/web/client.py,sha256=Ldu_rsW5O53QBH3iJ_gDlo9ip2d1-GQuVYo0KX_fzUU,1807
 tomwer/web/config.py,sha256=K-mGjde07maay9arYdfx3DHIEdFfeRBZX6IuxUL5UlA,1623
 tomwer/web/test/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tomwer/web/test/test_graylog_connection.py,sha256=SUNOC2mKEINGQMZkHzFgCPFpx7feDUCvhaJ83xb2thc,2220
-tomwer-1.1.0rc6.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
-tomwer-1.1.0rc6.dist-info/METADATA,sha256=Hjyq5fUHbKNiOZM8_I4Egc7_Xi8KaPqYHLCkRiQth68,11644
-tomwer-1.1.0rc6.dist-info/WHEEL,sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA,92
-tomwer-1.1.0rc6.dist-info/entry_points.txt,sha256=aDZTIsXRj1SgQ0tixWsmYGjM4y6gcYK7ykK6z7XlLjw,368
-tomwer-1.1.0rc6.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
-tomwer-1.1.0rc6.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
-tomwer-1.1.0rc6.dist-info/RECORD,,
+tomwer-1.1.1.dist-info/LICENSE,sha256=yR_hIZ1MfDh9x2_s23uFqBH7m5DgrBl9nJKkE37YChM,1877
+tomwer-1.1.1.dist-info/METADATA,sha256=RtIELVb6JZ5GgBrzavoySzYTOzk9oNWxxbbkPj6dgMo,11641
+tomwer-1.1.1.dist-info/WHEEL,sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA,92
+tomwer-1.1.1.dist-info/entry_points.txt,sha256=aDZTIsXRj1SgQ0tixWsmYGjM4y6gcYK7ykK6z7XlLjw,368
+tomwer-1.1.1.dist-info/namespace_packages.txt,sha256=Iut-JTfT11SZHHm77_ZeszD7pZDWXcTweCbvrJpqDyQ,14
+tomwer-1.1.1.dist-info/top_level.txt,sha256=Yz5zKh0FPiImtzHYcPuztG1AO8-6KEpUWgoChGbA0Ys,21
+tomwer-1.1.1.dist-info/RECORD,,