tomwer 1.0.4__py3-none-any.whl → 1.1.0__py3-none-any.whl

tomwer/gui/visualization/volumeoverview.py

@@ -0,0 +1,64 @@
+from silx.gui import qt
+from tomwer.core.volume.volumebase import TomwerVolumeBase
+from tomoscan.identifier import VolumeIdentifier
+from typing import Optional
+import logging
+
+_logger = logging.getLogger(__name__)
+
+
+class VolumeOverviewWidget(qt.QWidget):
+    def __init__(self, parent=None):
+        super().__init__(parent)
+        self._volumeIdentifier = None
+        self.setLayout(qt.QVBoxLayout())
+        self._tree = qt.QTreeWidget(self)
+        self._tree.setColumnCount(2)
+        self._tree.setHeaderLabels(("metadata", "value"))
+        self.layout().addWidget(self._tree)
+
+        # 1: define translations
+        self._x_position = qt.QTreeWidgetItem(self._tree)
+        self._x_position.setText(0, "x position")
+        self._y_position = qt.QTreeWidgetItem(self._tree)
+        self._y_position.setText(0, "y position")
+        self._z_position = qt.QTreeWidgetItem(self._tree)
+        self._z_position.setText(0, "z position")
+
+        # 2. define pixel size
+        self._x_pixel_size = qt.QTreeWidgetItem(self._tree)
+        self._x_pixel_size.setText(0, "x pixel size")
+        self._y_pixel_size = qt.QTreeWidgetItem(self._tree)
+        self._y_pixel_size.setText(0, "y pixel size")
+
+    def setVolume(self, volume: Optional[TomwerVolumeBase]):
+        if volume is None:
+            self._x_position.setText(1, "")
+            self._y_position.setText(1, "")
+            self._z_position.setText(1, "")
+            self._x_pixel_size.setText(1, "")
+            self._y_pixel_size.setText(1, "")
+        elif not isinstance(volume, TomwerVolumeBase):
+            raise TypeError(
+                f"volume is expected to be a {TomwerVolumeBase} or a {VolumeIdentifier}. Not ({type(volume)}) "
+            )
+        else:
+            try:
+                x_pos, y_pos, z_pos = volume.position()
+            except Exception:
+                self._x_position.setText(1, "?")
+                self._y_position.setText(1, "?")
+                self._z_position.setText(1, "?")
+            else:
+                self._x_position.setText(1, x_pos)
+                self._y_position.setText(1, y_pos)
+                self._z_position.setText(1, z_pos)
+
+            try:
+                x_size, y_size = volume.pixel_size
+            except Exception:
+                self._x_pixel_size.setText(1, "?")
+                self._y_pixel_size.setText(1, "?")
+            else:
+                self._x_pixel_size.setText(1, x_size)
+                self._y_pixel_size.setText(1, y_size)

tomwer/gui/visualization/volumeviewer.py

@@ -336,7 +336,7 @@ class VolumeViewer(qt.QMainWindow):
                 pass
             else:
                 raise TypeError(
-                    "Volume should be an instance of a Volume, a VolumeIdentifier or a string refering to a VolumeIdentifier"
+                    f"Volume should be an instance of a Volume, a VolumeIdentifier or a string refering to a VolumeIdentifier. {type(volume)} provided"
                 )
 
             data = self._get_data_volume(volume)

tomwer/resources/gui/icons/multi-document-save.svg

@@ -0,0 +1,101 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   version="1.1"
+   viewBox="0 0 32 32"
+   xml:space="preserve"
+   id="svg10"
+   sodipodi:docname="multi-document-save.svg"
+   inkscape:version="0.92.5 (2060ec1f9f, 2020-04-08)"
+   inkscape:export-filename="/media/payno/830add5c-f5d7-4db2-875e-03be4f0a67f0/dev/tomography/tomwer/tomwer/resources/gui/icons/multi-document-save.png"
+   inkscape:export-xdpi="134.50999"
+   inkscape:export-ydpi="134.50999"><metadata
+     id="metadata16"><rdf:RDF><cc:Work
+         rdf:about=""><dc:format>image/svg+xml</dc:format><dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" /><dc:title></dc:title></cc:Work></rdf:RDF></metadata><defs
+     id="defs14" /><sodipodi:namedview
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1"
+     objecttolerance="10"
+     gridtolerance="10"
+     guidetolerance="10"
+     inkscape:pageopacity="0"
+     inkscape:pageshadow="2"
+     inkscape:window-width="1565"
+     inkscape:window-height="901"
+     id="namedview12"
+     showgrid="false"
+     inkscape:zoom="7.375"
+     inkscape:cx="12.75286"
+     inkscape:cy="22.157776"
+     inkscape:window-x="72"
+     inkscape:window-y="27"
+     inkscape:window-maximized="0"
+     inkscape:current-layer="svg10" /><g
+     id="g875"
+     transform="translate(7.7288136,-10.440678)"><path
+       style="stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path2"
+       d="m 22.169864,27.598717 c 0,0.193206 -0.170956,0.351283 -0.379902,0.351283 H 5.8219024 C 5.6129561,27.95 5.442,27.791923 5.442,27.598717 V 12.835685 c 0,-0.193206 0.1709561,-0.351283 0.3799024,-0.351283 H 18.184688 c 0.208946,0 0.498432,0.113816 0.643555,0.252924 l 3.077969,2.951482 c 0.144363,0.139108 0.263652,0.411002 0.263652,0.604207 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path4"
+       d="m 20.430671,25.582351 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -4.928505 c 0,-0.115923 0.1025737,-0.21077 0.2279415,-0.21077 H 20.20273 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path6"
+       d="m 17.206059,16.267723 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -3.800885 c 0,-0.115924 0.1025737,-0.21077 0.2279415,-0.21077 h 9.3152083 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><rect
+       style="stroke-width:0.73062545"
+       id="rect8"
+       height="3.0048773"
+       width="1.6229432"
+       y="12.484402"
+       x="13.024853" /></g><g
+     transform="translate(2.194068,-3.5606607)"
+     id="g875-2"><path
+       style="stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path2-7"
+       d="m 22.169864,27.598717 c 0,0.193206 -0.170956,0.351283 -0.379902,0.351283 H 5.8219024 C 5.6129561,27.95 5.442,27.791923 5.442,27.598717 V 12.835685 c 0,-0.193206 0.1709561,-0.351283 0.3799024,-0.351283 H 18.184688 c 0.208946,0 0.498432,0.113816 0.643555,0.252924 l 3.077969,2.951482 c 0.144363,0.139108 0.263652,0.411002 0.263652,0.604207 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path4-0"
+       d="m 20.430671,25.582351 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -4.928505 c 0,-0.115923 0.1025737,-0.21077 0.2279415,-0.21077 H 20.20273 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path6-9"
+       d="m 17.206059,16.267723 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -3.800885 c 0,-0.115924 0.1025737,-0.21077 0.2279415,-0.21077 h 9.3152083 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><rect
+       style="stroke-width:0.73062545"
+       id="rect8-3"
+       height="3.0048773"
+       width="1.6229432"
+       y="12.484402"
+       x="13.024853" /></g><g
+     transform="translate(-3.9076269,2.6766275)"
+     id="g875-6"><path
+       style="stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path2-0"
+       d="m 22.169864,27.598717 c 0,0.193206 -0.170956,0.351283 -0.379902,0.351283 H 5.8219024 C 5.6129561,27.95 5.442,27.791923 5.442,27.598717 V 12.835685 c 0,-0.193206 0.1709561,-0.351283 0.3799024,-0.351283 H 18.184688 c 0.208946,0 0.498432,0.113816 0.643555,0.252924 l 3.077969,2.951482 c 0.144363,0.139108 0.263652,0.411002 0.263652,0.604207 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path4-6"
+       d="m 20.430671,25.582351 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -4.928505 c 0,-0.115923 0.1025737,-0.21077 0.2279415,-0.21077 H 20.20273 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><path
+       style="fill:#ffffff;stroke-width:0.73062545"
+       inkscape:connector-curvature="0"
+       id="path6-2"
+       d="m 17.206059,16.267723 c 0,0.115923 -0.102574,0.21077 -0.227941,0.21077 H 7.6629097 c -0.1253678,0 -0.2279415,-0.09485 -0.2279415,-0.21077 v -3.800885 c 0,-0.115924 0.1025737,-0.21077 0.2279415,-0.21077 h 9.3152083 c 0.125367,0 0.227941,0.09485 0.227941,0.21077 z" /><rect
+       style="stroke-width:0.73062545"
+       id="rect8-6"
+       height="3.0048773"
+       width="1.6229432"
+       y="12.484402"
+       x="13.024853" /></g></svg>