tomwer 1.0.3__py3-none-any.whl → 1.1.0__py3-none-any.whl

orangecontrib/tomwer/tutorials/EBS_tomo_listener.ows

@@ -0,0 +1,39 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="EBS tomo listener" description="">
+	<nodes>
+		<node id="0" name="scan listener" qualified_name="orangecontrib.tomwer.widgets.control.DataListenerOW.DataListenerOW" project_name="tomwer" version="" title="scan listener" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(358.0, 190.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(534.0, 226.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(681.0, 260.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(846.0, 297.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(212.0, 58.0)" end="(174.0, 101.0)" fill="#C1272D" />
+		<text id="1" type="text/plain" rect="(248.0, 20.0, 202.0, 76.0)" font-family="Ubuntu" font-size="16">wait for bliss scan and create NXtomo</text>
+		<arrow id="2" start="(279.0, 360.0)" end="(332.0, 263.0)" fill="#C1272D" />
+		<text id="3" type="text/plain" rect="(224.0, 379.0, 135.0, 10.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<text id="4" type="text/plain" rect="(611.0, 95.0, 114.0, 38.0)" font-family="Ubuntu" font-size="16">compute COR</text>
+		<arrow id="5" start="(616.0, 143.0)" end="(561.0, 183.0)" fill="#C1272D" />
+		<arrow id="6" start="(584.0, 412.0)" end="(642.0, 334.0)" fill="#C1272D" />
+		<text id="7" type="text/plain" rect="(557.0, 427.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute slice</text>
+		<text id="8" type="text/plain" rect="(902.0, 152.0, 117.0, 85.0)" font-family="Ubuntu" font-size="16">browse dataset and reconstructed slice(s)</text>
+		<arrow id="9" start="(883.0, 204.0)" end="(845.0, 253.0)" fill="#C1272D" />
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_blissConfiguration': {}, '_nxtomo_cfg_file': '', '_static_input': {'nxtomomill_cfg_file': ''}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'sino-sliding-window', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': True, 'SINOGRAM_LINE': 'middle', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'oversampling': 4, 'n_subsampling_y': 10, 'take_log': True, 'near_pos': 0.0, 'near_width': 20}, 'SIDE': 'left', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': True, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x01k\x00\x00\x00\xac\x00\x00\x06\x01\x00\x00\x03\x8e\x00\x00\x01k\x00\x00\x00\xd1\x00\x00\x06\x01\x00\x00\x03\x8e\x00\x00\x00\x00\x00\x00\x00\x00\x07\x80\x00\x00\x01k\x00\x00\x00\xd1\x00\x00\x06\x01\x00\x00\x03\x8e', '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/cast_volume.ows

@@ -0,0 +1,34 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="cast volume" description="">
+	<nodes>
+		<node id="0" name="volume selector" qualified_name="orangecontrib.tomwer.widgets.control.VolumeSelector.VolumeSelectorOW" project_name="tomwer" version="" title="volume selector" position="(166.0, 117.0)" />
+		<node id="1" name="cast volume" qualified_name="orangecontrib.tomwer.widgets.reconstruction.CastNabuVolumeOW.CastNabuVolumeOW" project_name="tomwer" version="" title="cast volume" position="(322.0, 186.0)" />
+		<node id="2" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer" position="(532.0, 198.0)" />
+		<node id="3" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer (1)" position="(500.0, 311.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="volume" sink_channel="volume" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="volume" sink_channel="volume" enabled="true" />
+		<link id="2" source_node_id="1" sink_node_id="3" source_channel="cast volume" sink_channel="volume" enabled="true" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(15.0, 214.0, 150.0, 31.0)" font-family="Ubuntu" font-size="16">define volume</text>
+		<arrow id="1" start="(67.0, 211.0)" end="(109.0, 160.0)" fill="#C1272D" />
+		<arrow id="2" start="(379.0, 94.0)" end="(341.0, 148.0)" fill="#C1272D" />
+		<text id="3" type="text/plain" rect="(393.0, 64.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">volume casting</text>
+		<text id="4" type="text/plain" rect="(626.0, 110.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">display original volume</text>
+		<text id="5" type="text/plain" rect="(372.0, 418.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">display volume casted</text>
+		<arrow id="6" start="(597.0, 123.0)" end="(555.0, 171.0)" fill="#C1272D" />
+		<arrow id="7" start="(411.0, 410.0)" end="(460.0, 364.0)" fill="#C1272D" />
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'cast_volume_params': {}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/simple_slice_reconstruction.ows

@@ -0,0 +1,39 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="simple slice reconstruction" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(324.0, 183.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(649.0, 261.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(820.0, 307.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />
+		<arrow id="1" start="(248.0, 298.0)" end="(292.0, 239.0)" fill="#C1272D" />
+		<arrow id="2" start="(576.0, 108.0)" end="(521.0, 168.0)" fill="#C1272D" />
+		<arrow id="3" start="(573.0, 405.0)" end="(625.0, 330.0)" fill="#C1272D" />
+		<arrow id="4" start="(913.0, 208.0)" end="(851.0, 258.0)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(275.0, 19.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<text id="6" type="text/plain" rect="(187.0, 309.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<text id="7" type="text/plain" rect="(596.0, 53.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
+		<text id="8" type="text/plain" rect="(522.0, 423.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">define one or several slice to be reconstructed</text>
+		<text id="9" type="text/plain" rect="(935.0, 174.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/simple_volume_local_reconstruction.ows

@@ -0,0 +1,49 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="simple volume reconstruction (local)" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(324.0, 183.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(649.0, 261.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(818.0, 248.0)" />
+		<node id="5" name="nabu volume reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuVolumeOW.NabuVolumeOW" project_name="tomwer" version="" title="nabu volume reconstruction" position="(812.0, 391.0)" />
+		<node id="6" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer" position="(978.0, 424.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="4" source_node_id="3" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="5" source_node_id="5" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />
+		<arrow id="1" start="(248.0, 298.0)" end="(292.0, 239.0)" fill="#C1272D" />
+		<arrow id="2" start="(576.0, 108.0)" end="(521.0, 168.0)" fill="#C1272D" />
+		<arrow id="3" start="(573.0, 405.0)" end="(625.0, 330.0)" fill="#C1272D" />
+		<arrow id="4" start="(905.0, 165.99999999999997)" end="(843.0, 215.99999999999997)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(275.0, 19.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<text id="6" type="text/plain" rect="(187.0, 309.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<text id="7" type="text/plain" rect="(596.0, 53.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
+		<text id="8" type="text/plain" rect="(522.0, 423.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">define one or several slice to be reconstructed</text>
+		<text id="9" type="text/plain" rect="(919.0, 121.0, 150.0, 85.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
+		<arrow id="10" start="(716.9999999999999, 512.0)" end="(762.9999999999999, 455.0)" fill="#C1272D" />
+		<arrow id="11" start="(1042.0, 342.0)" end="(1005.0, 380.0)" fill="#C1272D" />
+		<text id="12" type="text/plain" rect="(1066.0, 309.0, 150.0, 67.0)" font-family="Ubuntu" font-size="16">browse reconstructed volume</text>
+		<text id="13" type="text/plain" rect="(690.0, 523.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">reconstruct volume</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="5" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_volume_params': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="6" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows

@@ -0,0 +1,59 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="simple volume reconstruction (on slurm)" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(324.0, 183.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(649.0, 261.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(818.0, 248.0)" />
+		<node id="5" name="nabu volume reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuVolumeOW.NabuVolumeOW" project_name="tomwer" version="" title="nabu volume reconstruction" position="(812.0, 391.0)" />
+		<node id="6" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer" position="(1136.75, 545.25)" />
+		<node id="7" name="slurm cluster" qualified_name="orangecontrib.tomwer.widgets.cluster.SlurmClusterOW.SlurmClusterOW" project_name="tomwer" version="" title="slurm cluster" position="(648.0, 486.5)" />
+		<node id="8" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(988.0, 497.75)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="4" source_node_id="3" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="5" source_node_id="7" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" />
+		<link id="6" source_node_id="5" sink_node_id="8" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" />
+		<link id="7" source_node_id="8" sink_node_id="6" source_channel="volume" sink_channel="volume" enabled="true" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />
+		<arrow id="1" start="(248.0, 298.0)" end="(292.0, 239.0)" fill="#C1272D" />
+		<arrow id="2" start="(576.0, 108.0)" end="(521.0, 168.0)" fill="#C1272D" />
+		<arrow id="3" start="(573.0, 405.0)" end="(625.0, 330.0)" fill="#C1272D" />
+		<arrow id="4" start="(905.0, 165.99999999999997)" end="(843.0, 215.99999999999997)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(276.25, 17.75, 150.0, 31.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<text id="6" type="text/plain" rect="(187.0, 309.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<text id="7" type="text/plain" rect="(596.0, 53.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
+		<text id="8" type="text/plain" rect="(460.75, 416.75, 150.0, 67.0)" font-family="Ubuntu" font-size="16">define one or several slice to be reconstructed</text>
+		<text id="9" type="text/plain" rect="(919.0, 121.0, 150.0, 85.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
+		<arrow id="10" start="(937.0, 320.75)" end="(845.5, 355.0)" fill="#C1272D" />
+		<arrow id="11" start="(1220.75, 472.0)" end="(1183.75, 510.0)" fill="#C1272D" />
+		<text id="12" type="text/plain" rect="(1244.75, 439.0, 150.0, 67.0)" font-family="Ubuntu" font-size="16">browse reconstructed volume</text>
+		<text id="13" type="text/plain" rect="(953.75, 289.25, 150.0, 49.0)" font-family="Ubuntu" font-size="16">reconstruct volume</text>
+		<arrow id="14" start="(578.75, 588.75)" end="(622.5, 523.75)" fill="#C1272D" />
+		<arrow id="15" start="(897.5, 612.5)" end="(948.75, 553.75)" fill="#C1272D" />
+		<text id="16" type="text/plain" rect="(842.5, 611.75, 150.0, 26.0)" font-family="Ubuntu" font-size="16">wait for the slurm job to be finished</text>
+		<text id="17" type="text/plain" rect="(531.25, 583.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">define slurm node to be used</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="5" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_volume_params': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="6" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="7" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="8" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/using_saaxis_to_find_cor.ows

@@ -0,0 +1,44 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="using saaxis to find COR" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(319.0, 189.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(469.0, 237.0)" />
+		<node id="3" name="semi-automated center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.SAAxisOW.SAAxisOW" project_name="tomwer" version="" title="semi-automated center of rotation" position="(605.0, 288.0)" />
+		<node id="4" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(772.0, 340.0)" />
+		<node id="5" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(931.0, 377.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
+		<link id="4" source_node_id="4" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(223.0, 32.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<arrow id="1" start="(210.0, 73.0)" end="(159.0, 116.0)" fill="#C1272D" />
+		<text id="2" type="text/plain" rect="(157.0, 304.0, 150.0, 49.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<arrow id="3" start="(232.0, 299.0)" end="(290.0, 249.0)" fill="#C1272D" />
+		<arrow id="4" start="(550.0, 149.0)" end="(484.0, 201.0)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(577.0, 114.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
+		<arrow id="6" start="(532.0, 427.0)" end="(579.0, 356.0)" fill="#C1272D" />
+		<text id="7" type="text/plain" rect="(465.0, 427.0, 150.0, 31.0)" font-family="Ubuntu" font-size="16">refine COR</text>
+		<arrow id="8" start="(867.0, 239.0)" end="(808.0, 292.0)" fill="#C1272D" />
+		<text id="9" type="text/plain" rect="(896.0, 198.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">reconstruct one or several slices</text>
+		<arrow id="10" start="(852.0, 501.0)" end="(895.0, 444.0)" fill="#C1272D" />
+		<text id="11" type="text/plain" rect="(822.2222222222223, 503.55555555555554, 150.0, 26.0)" font-family="Ubuntu" font-size="16">browse reconstructed slices and browse dataset</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'sa_axis_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="5" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py

@@ -73,7 +73,7 @@ class FutureSupervisorOW(OWBaseWidget, openclass=True):
     resizing_enabled = True
     compress_signal = False
 
-    _static_input = Setting(dict())
+    _ewoks_default_inputs = Setting(dict())
 
     class Inputs:
         future_in = Input(

orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py

@@ -57,7 +57,7 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
     resizing_enabled = True
     compress_signal = False
 
-    _static_input = Setting(dict())
+    _ewoks_default_inputs = Setting(dict())
 
     ewokstaskclass = tomwer.core.process.cluster.supervisor._SupervisorPlaceHolder
 
@@ -70,8 +70,8 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
         self._widget = SlurmSettingsWidget(parent=self)
         layout.addWidget(self._widget)
 
-        if self._static_input != {}:
-            self._widget.setConfiguration(self._static_input)
+        if self._ewoks_default_inputs != {}:
+            self._widget.setConfiguration(self._ewoks_default_inputs)
 
         # trigger the signal to avoid any user request
         self.Outputs.data_out.send(self.getConfiguration())
@@ -79,10 +79,20 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
         # connect signal / slot
         self._widget.sigConfigChanged.connect(self._configurationChanged)
 
+    def __new__(cls, *args, **kwargs):
+        # ensure backward compatibility with 'static_input'
+        static_input = kwargs.get("stored_settings", {}).get("_static_input", None)
+        if static_input not in (None, {}):
+            _logger.warning(
+                "static_input has been deprecated. Will be replaced by _ewoks_default_inputs in the workflow file. Please save the workflow to apply modifications"
+            )
+            kwargs["stored_settings"]["_ewoks_default_inputs"] = static_input
+        return super().__new__(cls, *args, **kwargs)
+
     def _configurationChanged(self):
         slurmClusterconfiguration = self.getConfiguration()
         self.Outputs.data_out.send(slurmClusterconfiguration)
-        self._static_input = slurmClusterconfiguration.to_dict()
+        self._ewoks_default_inputs = slurmClusterconfiguration.to_dict()
 
     def getConfiguration(self):
         return self._widget.getSlurmClusterConfiguration()

orangecontrib/tomwer/widgets/cluster/__init__.py

@@ -22,7 +22,7 @@
 #
 #############################################################################
 
-NAME = "cluster"
+NAME = "compute cluster"
 
 ID = "orangecontrib.tomwer.widgets.cluster"
 

orangecontrib/tomwer/widgets/control/DataListOW.py

@@ -27,11 +27,10 @@ __authors__ = ["C. Nemoz", "H. Payno"]
 __license__ = "MIT"
 __date__ = "01/12/2016"
 
-from orangewidget import widget, gui
+from orangewidget import gui
 from silx.gui import qt
 from tomwer.gui.control.datalist import GenericScanListDialog
 from tomwer.core.scan.hdf5scan import HDF5TomoScan
-from tomwer.web.client import OWClient
 from tomwer.core.scan.scanbase import TomwerScanBase
 import tomwer.core.process.control.scanlist
 from orangewidget.settings import Setting
@@ -41,7 +40,7 @@ import logging
 logger = logging.getLogger(__name__)
 
 
-class DataListOW(OWBaseWidget, OWClient, openclass=True):
+class DataListOW(OWBaseWidget, openclass=True):
     name = "scan list"
     id = "orange.widgets.tomwer.scanlist"
     description = "List path to reconstructions/scans. Those path will be send to the next box once validated."
@@ -72,8 +71,7 @@ class DataListOW(OWBaseWidget, OWClient, openclass=True):
 
         :param parent: the parent widget
         """
-        widget.OWBaseWidget.__init__(self, parent)
-        OWClient.__init__(self)
+        super().__init__(parent)
         self.widget = GenericScanListDialog(parent=self)
         self.widget.sigUpdated.connect(self._updateSettings)
         self._loadSettings()
@@ -117,3 +115,12 @@ class DataListOW(OWBaseWidget, OWClient, openclass=True):
         self._scanIDs = []
         for scan in self.widget.datalist._myitems:
             self._scanIDs.append(scan)
+
+    def keyPressEvent(self, event):
+        """
+        To shortcut orange and make sure the `delete` key will be interpreted we need to overwrite this function
+        """
+        if event.key() == qt.Qt.Key_Delete:
+            self.widget._removeSelected()
+        else:
+            super().keyPressEvent(event)

orangecontrib/tomwer/widgets/control/DataListenerOW.py

@@ -143,19 +143,25 @@ class DataListenerOW(
         self._loadSettings()
 
     def _loadSettings(self):
-        if "bliss_server_configuration" in self._static_input:
-            bliss_configuration = self._static_input["bliss_server_configuration"]
+        if "bliss_server_configuration" in self._static_input:  # pylint: disable=E1135
+            bliss_configuration = self._static_input[  # pylint: disable=E1136
+                "bliss_server_configuration"
+            ]
         else:
             bliss_configuration = self._blissConfiguration
         if bliss_configuration != {}:
             self._widget.setBlissServerConfiguation(bliss_configuration)
-        if "nxtomomill_cfg_file" in self._static_input:
-            nxtomo_cfg_file = self._static_input["nxtomomill_cfg_file"]
+        if "nxtomomill_cfg_file" in self._static_input:  # pylint: disable=E1135
+            nxtomo_cfg_file = self._static_input[  # pylint: disable=E1136
+                "nxtomomill_cfg_file"
+            ]
         else:
             nxtomo_cfg_file = self._nxtomo_cfg_file
         self._widget.setCFGFilePath(nxtomo_cfg_file)
-        if "output_dir" in self._static_input:
-            self._widget.setOutputFolder(self._static_input["output_dir"])
+        if "output_dir" in self._static_input:  # pylint: disable=E1135
+            self._widget.setOutputFolder(
+                self._static_input["output_dir"]  # pylint: disable=E1136
+            )
 
     def getNXTomomillConfiguration(self):
         cfg_file = self._widget.getCFGFilePath()
@@ -192,6 +198,7 @@ class DataListenerOW(
             bliss_scan.master_file,
             entry=bliss_scan.entry,
             outputdir=self._widget.getOutputFolder(),
+            scan=bliss_scan,
         )
         if success:
             self._processingStack.add(data=bliss_scan, configuration=configuration)
@@ -252,17 +259,19 @@ class DataListenerOW(
 
     def _jsonRPCConfigChanged(self):
         self._blissConfiguration = self._widget.getBlissServerConfiguration()
-        self._static_input[
+        self._static_input[  # pylint: disable=E1137
             "bliss_server_configuration"
         ] = self._widget.getBlissServerConfiguration()
-        self._static_input["output_dir"] = self._widget.getOutputFolder()
+        self._static_input[  # pylint: disable=E1137
+            "output_dir"
+        ] = self._widget.getOutputFolder()
         if self.is_active():
             self.activate(False)
             self.activate(True)
 
     def _nxtomoFileChanged(self, cfg_file):
         self._nxtomo_cfg_file = cfg_file
-        self._static_input["nxtomomill_cfg_file"] = cfg_file
+        self._static_input["nxtomomill_cfg_file"] = cfg_file  # pylint: disable=E1137
 
     def setMock(self, mock, acquisitions):
         self._mock = mock

orangecontrib/tomwer/widgets/control/DataSelectorOW.py

@@ -30,18 +30,17 @@ __date__ = "25/05/2018"
 from silx.gui import qt
 from orangewidget import gui
 from orangewidget.widget import Output, Input, OWBaseWidget
-from tomwer.web.client import OWClient
 from tomwer.core.scan.hdf5scan import HDF5TomoScan
 from tomwer.gui.control.scanselectorwidget import ScanSelectorWidget
 from tomwer.core.scan.scanbase import TomwerScanBase
 from orangewidget.settings import Setting
-import tomwer.core.process.control.scanvalidator
+import tomwer.core.process.control.scanselector
 import logging
 
 logger = logging.getLogger(__name__)
 
 
-class DataSelectorOW(OWBaseWidget, OWClient, openclass=True):
+class DataSelectorOW(OWBaseWidget, openclass=True):
     name = "scan selector"
     id = "orange.widgets.tomwer.scanselector"
     description = (
@@ -52,7 +51,7 @@ class DataSelectorOW(OWBaseWidget, OWClient, openclass=True):
     priority = 42
     keywords = ["tomography", "selection", "tomwer", "scan", "data"]
 
-    ewokstaskclass = tomwer.core.process.control.scanvalidator._ScanValidatorPlaceHolder
+    ewokstaskclass = tomwer.core.process.control.scanselector._ScanSelectorPlaceHolder
 
     want_main_area = True
     want_control_area = False
@@ -69,8 +68,7 @@ class DataSelectorOW(OWBaseWidget, OWClient, openclass=True):
 
     def __init__(self, parent=None):
         """ """
-        OWBaseWidget.__init__(self, parent)
-        OWClient.__init__(self)
+        super().__init__(parent)
 
         self.widget = ScanSelectorWidget(parent=self)
         self._loadSettings()
@@ -124,3 +122,12 @@ class DataSelectorOW(OWBaseWidget, OWClient, openclass=True):
         self._scanIDs = []
         for scan in self.widget.dataList._myitems:
             self._scanIDs.append(scan)
+
+    def keyPressEvent(self, event):
+        """
+        To shortcut orange and make sure the `delete` key will be interpreted we need to overwrite this function
+        """
+        if event.key() == qt.Qt.Key_Delete:
+            self.widget.removeSelectedDatasets()
+        else:
+            super().keyPressEvent(event)

orangecontrib/tomwer/widgets/control/DataTransfertOW.py

@@ -36,7 +36,6 @@ from silx.gui import qt
 import tomwer.core.process.control.scantransfer
 from tomwer.core.process.control.scantransfer import ScanTransfer
 from orangecontrib.tomwer.orange.settings import CallbackSettingsHandler
-from tomwer.web.client import OWClient
 from tomwer.gui.control.datatransfert import DataTransfertSelector
 from tomwer.core.scan.scanbase import TomwerScanBase
 from processview.core.manager import ProcessManager, DatasetState
@@ -47,7 +46,7 @@ import functools
 logger = logging.getLogger(__name__)
 
 
-class DataTransfertOW(SuperviseOW, OWClient):
+class DataTransfertOW(SuperviseOW):
     """
     A simple widget managing the copy of an incoming folder to an other one
 
@@ -91,8 +90,7 @@ class DataTransfertOW(SuperviseOW, OWClient):
         data = Output(name="data", type=TomwerScanBase)
 
     def __init__(self, parent=None):
-        SuperviseOW.__init__(self, parent)
-        OWClient.__init__(self)
+        super().__init__(parent)
 
         self._destDir = None
         self._forceSync = False
@@ -115,7 +113,7 @@ class DataTransfertOW(SuperviseOW, OWClient):
         if self.dest_dir_settings != "":
             self._widget.setFolder(self.dest_dir_settings)
 
-    def _requestFolder(self):
+    def _requestFolder(self):  # pragma: no cover
         """Launch a QFileDialog to ask the user the output directory"""
         dialog = qt.QFileDialog(self)
         dialog.setWindowTitle("Destination folder")

orangecontrib/tomwer/widgets/control/DataValidatorOW.py

@@ -157,7 +157,7 @@ class DataValidatorOW(SuperviseOW):
         return self._widget.isValidationManual()
 
     def _changeReconsParamsEmited(self, scan):
-        self.Outputs.recons_param_changed.send(scan)
+        self.Outputs.recons_params_changed.send(scan)
 
     def _scanReadyEmitted(self, scan):
         ProcessManager().notify_dataset_state(
@@ -167,9 +167,13 @@ class DataValidatorOW(SuperviseOW):
 
     def _updateSettings(self):
         viewer = self._widget._centralWidget
-        self._viewer_config["mode"] = viewer.getDisplayMode()
-        self._viewer_config["slice_opt"] = viewer.getSliceOption()
-        self._viewer_config["radio_opt"] = viewer.getRadioOption()
+        self._viewer_config["mode"] = viewer.getDisplayMode()  # pylint: disable=E1137
+        self._viewer_config[  # pylint: disable=E1137
+            "slice_opt"
+        ] = viewer.getSliceOption()
+        self._viewer_config[  # pylint: disable=E1137
+            "radio_opt"
+        ] = viewer.getRadioOption()
 
     def _setSettings(self, settings):
         viewer = self._widget._centralWidget