tol-sdk 1.7.5b3__py3-none-any.whl → 1.7.5b4__py3-none-any.whl

tol/core/data_object_converter.py

@@ -97,7 +97,8 @@ class SanitisingConverter(DataObjectToDataObjectOrUpdateConverter):
 
     def __init__(
         self,
-        data_object_factory: DataObjectFactory
+        data_object_factory: DataObjectFactory,
+        **kwargs
     ):
         super().__init__(data_object_factory)
 

tol/flows/converters/__init__.py

@@ -55,3 +55,4 @@ from .tolqc_species_to_elastic_species_converter import TolqcSpeciesToElasticSpe
 from .sts_sample_to_casm_benchling_converter import StsSampleToCasmBenchlingConverterFactory # noqa F401
 from .treeofsex_species_to_treeofsexwh_species_converter import TreeofsexSpeciesToTreeofsexwhSpeciesConverter  # noqa F401
 from .treeofsex_upload_to_treeofsex_attribute_converter import TreeofsexUploadToTreeofsexAttributeConverter  # noqa F401
+from .skip_null_fields_converter import SkipNullFieldsConverter  # noqa F401

tol/flows/converters/skip_null_fields_converter.py

@@ -0,0 +1,42 @@
+# SPDX-FileCopyrightText: 2025 Genome Research Ltd.
+# SPDX-License-Identifier: MIT
+
+from dataclasses import dataclass
+from typing import Iterable
+
+from tol.core import DataObject, DataObjectToDataObjectOrUpdateConverter
+
+
+class SkipNullFieldsConverter(DataObjectToDataObjectOrUpdateConverter):
+
+    @dataclass(slots=True, frozen=True, kw_only=True)
+    class Config:
+        field_names: list[str]
+
+    __slots__ = ['__config']
+    __config: Config
+
+    def __init__(self, data_object_factory, config: Config) -> None:
+        super().__init__(data_object_factory)
+        self.__config = config
+        self._data_object_factory = data_object_factory
+
+    def convert(self, data_object: DataObject) -> Iterable[DataObject]:
+        """
+        removing null fields from the DataObject
+        """
+
+        passes = True
+        for field in self.__config.field_names:
+            value = data_object.get_field_by_name(field)
+            if value is None:
+                passes = False
+                break
+
+        if passes:
+            ret = self._data_object_factory(
+                data_object.type,
+                data_object.id,
+                attributes=data_object.attributes
+            )
+            yield ret

{tol_sdk-1.7.5b3.dist-info → tol_sdk-1.7.5b4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: tol-sdk
-Version: 1.7.5b3
+Version: 1.7.5b4
 Summary: SDK for interaction with ToL, Sanger and external services
 Author-email: ToL Platforms Team <tol-platforms@sanger.ac.uk>
 License: MIT

{tol_sdk-1.7.5b3.dist-info → tol_sdk-1.7.5b4.dist-info}/RECORD

@@ -89,7 +89,7 @@ tol/core/attribute_metadata.py,sha256=wYD3NXDdStrpkUZoyTUiEpp7c14f7MLIcyooT1G4GE
 tol/core/core_converter.py,sha256=Gn4J507BtqDjnOWV2MFRYGz8YElJAKQItmnCrD72s7k,4504
 tol/core/data_loader.py,sha256=k-ET1nIohIz6PcADbEn9Y7k9TupoiBYxKDkcAl_9pGY,14710
 tol/core/data_object.py,sha256=GxG04JMcICaiHU1rufkhoD8jb9YQLhE0QWlFU2ZkQsM,4241
-tol/core/data_object_converter.py,sha256=zIGcin3jcoswBfsuUe74C2nxpyzvhHkP4_ZwKZWxh_Y,3765
+tol/core/data_object_converter.py,sha256=FUNUXGi5FIdIe34B0g32hhRf8GGzWTHW7vLhb1GXG6E,3783
 tol/core/data_source_attribute_metadata.py,sha256=NHvJ_Gmw7-Oej1MoFCohvq4f6emDJ2HF483UmW2Qd_c,4407
 tol/core/data_source_dict.py,sha256=d-hSmoWTwG6IOc0cQTLap1EBslsxYIWGUd3ScSoeH_Q,1705
 tol/core/datasource.py,sha256=e9GaeDPfO_Gs7cgQhmNxCiSDlRNf64reegzFebcMNkA,6303
@@ -148,7 +148,7 @@ tol/flows/__init__.py,sha256=M7iSvnBJs6fJ8M38cW0bYQa9WW0TN8FHAMjIHPDNAJ4,166
 tol/flows/logger.py,sha256=rWXbaknGcPEZRFvC1CiB1qkhFRZsQk435w7VyJ3cpyw,170
 tol/flows/secrets.py,sha256=1mlbsxaahzYRfVAx3XdztHOmUCtDMSJDzHysdbaCtj0,352
 tol/flows/sequencing_submissions.py,sha256=ukz_y5be-BCBN2y3JPQ2EK6b3jwOCh-187j-jnw3EUY,11027
-tol/flows/converters/__init__.py,sha256=Ee1yMFWwsRoG71ZFCsqtNwF45AR8farmV9h3ERrK994,6154
+tol/flows/converters/__init__.py,sha256=ZSF9i-32mVsV4-rNYjA6TrIEPrgku5svCF8lz6HEqf8,6231
 tol/flows/converters/benchling_entity_to_benchling_worklist_item_converter_factory.py,sha256=PN27fcvN4JLBnLrtPPAot1cWjAwPQHVcIDoMfPDeKzU,1210
 tol/flows/converters/benchling_extraction_to_elastic_extraction_converter.py,sha256=S8pbmIeKlcXrLPRJHYBUGP0-Q7jTOV2QQk2TeA2naWo,1966
 tol/flows/converters/benchling_extraction_to_elastic_sequencing_request_converter.py,sha256=2RiyRvGRSWzpUwEI4p-s0afshJpFUUxPqv2z-nyDSVg,1992
@@ -188,6 +188,7 @@ tol/flows/converters/labwhere_location_to_sts_tray_converter.py,sha256=dSBP5Hfdv
 tol/flows/converters/mlwh_extraction_to_elastic_extraction_converter.py,sha256=047eU_3Zb3ZlJ8utrk3o_VW7jifv5VO0WxgmFg-QkaE,1195
 tol/flows/converters/mlwh_run_data_to_elastic_run_data_converter.py,sha256=f0I_N8DH_9Kom4Fpl_O7hKTUPPiURWeyhxWN3XFLmLk,1313
 tol/flows/converters/mlwh_sequencing_request_to_elastic_sequencing_request_converter.py,sha256=zXYkq37qsvHEY7O1zh2vOoMBdt8hE7T1SuFIOR2DQrM,1209
+tol/flows/converters/skip_null_fields_converter.py,sha256=IlLrX31XWpQ58indW-hk9eApMunu2HGFhMConYDmxtU,1226
 tol/flows/converters/sts_banked_sample_to_elastic_sample_converter.py,sha256=HK_3Q60E6CKCT8YSWbZXu0Wqs2mmBLYhcD0OEwXM4Qs,688
 tol/flows/converters/sts_manifest_to_elastic_manifest_converter.py,sha256=Ko3ulOFXXYaZB1YUiwu_HPlP5oPZeI65hViAZ05cioQ,1806
 tol/flows/converters/sts_project_to_elastic_sample_update_converter.py,sha256=b-hdbusSgbWDg7KwPXOVsaxzznZg0kGJcYpvvs4LDHU,623
@@ -339,9 +340,9 @@ tol/validators/unique_values.py,sha256=o5IrfUNLEmlEp8kpInTtFnTq-FqiHSC9TItKdf-LI
 tol/validators/unique_whole_organisms.py,sha256=RdqA1GzIf3LTdrmNGGdxv0aW2udDY2P9EaqZb40hhik,5735
 tol/validators/interfaces/__init__.py,sha256=jtOxnwnwqV_29xjmmMcS_kvlt-pQiWwQYJn2YRP07_w,172
 tol/validators/interfaces/condition_evaluator.py,sha256=nj8Cb8hi47OBy6OVNfeLhF-Pjwtr8MiOSymYL6hfVes,3766
-tol_sdk-1.7.5b3.dist-info/licenses/LICENSE,sha256=RF9Jacy-9BpUAQQ20INhTgtaNBkmdTolYCHtrrkM2-8,1077
-tol_sdk-1.7.5b3.dist-info/METADATA,sha256=EJao_K6Vaa6nFKvIM8iw1vx73RocSQXiK4KkuFfQRVM,3081
-tol_sdk-1.7.5b3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-tol_sdk-1.7.5b3.dist-info/entry_points.txt,sha256=jH3HfTwxjzog7E3lq8CKpUWGIRY9FSXbyL6CpUmv6D0,36
-tol_sdk-1.7.5b3.dist-info/top_level.txt,sha256=PwKMQLphyZNvagBoriVbl8uwHXQl8IC1niawVG0iXMM,10
-tol_sdk-1.7.5b3.dist-info/RECORD,,
+tol_sdk-1.7.5b4.dist-info/licenses/LICENSE,sha256=RF9Jacy-9BpUAQQ20INhTgtaNBkmdTolYCHtrrkM2-8,1077
+tol_sdk-1.7.5b4.dist-info/METADATA,sha256=ZR7pMG-jGHoasPgY1zqvDMJMc4rm4rbqRi0hiC5pyN4,3081
+tol_sdk-1.7.5b4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+tol_sdk-1.7.5b4.dist-info/entry_points.txt,sha256=jH3HfTwxjzog7E3lq8CKpUWGIRY9FSXbyL6CpUmv6D0,36
+tol_sdk-1.7.5b4.dist-info/top_level.txt,sha256=PwKMQLphyZNvagBoriVbl8uwHXQl8IC1niawVG0iXMM,10
+tol_sdk-1.7.5b4.dist-info/RECORD,,