tol-sdk 1.7.4__py3-none-any.whl → 1.7.5b0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. tol/api_base/__init__.py +1 -0
  2. tol/api_base/blueprint.py +19 -8
  3. tol/{s3/data_upload/blueprint.py → api_base/data_upload.py} +21 -6
  4. tol/api_base/pipeline_steps.py +4 -4
  5. tol/api_client/api_datasource.py +8 -8
  6. tol/api_client/converter.py +38 -52
  7. tol/api_client/factory.py +21 -19
  8. tol/api_client/parser.py +138 -98
  9. tol/api_client/view.py +118 -43
  10. tol/core/__init__.py +2 -1
  11. tol/core/data_object.py +27 -9
  12. tol/core/data_object_converter.py +37 -2
  13. tol/core/factory.py +51 -62
  14. tol/core/validate.py +1 -0
  15. tol/ena/client.py +60 -10
  16. tol/ena/ena_datasource.py +16 -10
  17. tol/ena/ena_methods.py +33 -32
  18. tol/ena/parser.py +15 -2
  19. tol/s3/__init__.py +0 -1
  20. tol/sql/model.py +1 -1
  21. tol/sql/pipeline_step/factory.py +1 -1
  22. tol/sql/sql_converter.py +7 -1
  23. tol/validators/__init__.py +12 -1
  24. tol/validators/allowed_keys.py +17 -12
  25. tol/validators/allowed_values.py +21 -63
  26. tol/validators/allowed_values_from_datasource.py +91 -0
  27. tol/validators/assert_on_condition.py +56 -0
  28. tol/validators/ena_submittable.py +61 -0
  29. tol/{s3/data_upload → validators/interfaces}/__init__.py +2 -0
  30. tol/validators/interfaces/condition_evaluator.py +61 -0
  31. tol/validators/min_one_valid_value.py +55 -0
  32. tol/validators/mutually_exclusive.py +107 -0
  33. tol/validators/regex.py +10 -24
  34. tol/validators/regex_by_value.py +14 -33
  35. tol/validators/specimens_have_same_taxon.py +60 -0
  36. tol/validators/sts_fields.py +88 -0
  37. tol/validators/tolid.py +110 -0
  38. tol/validators/unique_values.py +25 -17
  39. tol/validators/unique_whole_organisms.py +109 -0
  40. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/METADATA +1 -1
  41. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/RECORD +45 -35
  42. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/WHEEL +0 -0
  43. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/entry_points.txt +0 -0
  44. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/licenses/LICENSE +0 -0
  45. {tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/top_level.txt +0 -0
{tol_sdk-1.7.4.dist-info → tol_sdk-1.7.5b0.dist-info}/RECORD RENAMED
@@ -4,11 +4,12 @@ tol/markdown.py,sha256=X-ooYUYLkkVS8DyBHYib8d2QBBNMPlBP5_ZQz8-mAYc,570
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  tol/actions/__init__.py,sha256=xOj2kvRYv2GWQLqrpL_xhwZUZDwtOBnxb5CZ9qmP-pk,169
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  tol/actions/action.py,sha256=HlfUsfVGd2vuNAwD_01yo1i32nh6UNrt_ytcY2ladgM,651
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  tol/actions/upsert_action.py,sha256=DnSz1LhHibF0WcK6Qht5eLIGi3PPXc6GSRsd8Y2dZBE,1366
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- tol/api_base/__init__.py,sha256=xv9kkAyb1Q5vhKgq6f-JpY7lIAla51U-gIpA5U1OfkA,312
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+ tol/api_base/__init__.py,sha256=K8Gpp7nEROn4t0JzJwEbiR49C3KI091ZxoljgnpXGac,367
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  tol/api_base/action.py,sha256=l3MzD3jSDdYiZs-HCT4YEsXkp34X26k6yWugXrRB2XU,6575
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- tol/api_base/blueprint.py,sha256=lyNXgyyZ7kEL5uuIuSNkardFy8ZcDIfftt8c5xiRjyA,19061
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+ tol/api_base/blueprint.py,sha256=AHCvBUwvXbXtKuRv_MmQNtMrXnVEtdNVZMh-_CMsYY0,19345
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  tol/api_base/controller.py,sha256=5Fp2FobjXXPlongu1j7adGJKlSVufW0_jpk_wZIMRa4,26818
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- tol/api_base/pipeline_steps.py,sha256=Y7tOwaBBanxAqiUrTpmF6yaLkEJI6o0ELnM-2CaCvHs,5832
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+ tol/api_base/data_upload.py,sha256=z8Kp4BWQ6q06vT9ZwS8cgedWuGxBwZLkT6xpHk1K008,2939
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+ tol/api_base/pipeline_steps.py,sha256=Y3rcqQh1w4F0tCxMLGI3H8W3pbl54OWLrUYbBR44Y4A,5850
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  tol/api_base/system.py,sha256=c47sbcNaCd3teiJLO-Zwg1cUNvfCvRO4GmKzAMNxZrw,1219
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  tol/api_base/auth/__init__.py,sha256=LNbVtQDlzKWzLoCmxAPSIAcM6mlVMnn0Aj9HFUudseo,460
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  tol/api_base/auth/asserts.py,sha256=3kHP2yW6HZxevIgeO8Rl3iKovi8WHZcguVbPSFUjawQ,2765
@@ -30,15 +31,15 @@ tol/api_base/misc/list_get_parameters.py,sha256=6DtUgfKPTok3utKPOxceJdwV_ZnJ5nis
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  tol/api_client/__init__.py,sha256=58SAywuMrIUCBAY9us_d_RLTMnaUTYWWts0LRQC5wLo,187
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- tol/api_client/api_datasource.py,sha256=GOHvAmFzrHdux2wxY-MwUbp6eWbbS01L7FvmVyXJVZM,14330
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+ tol/api_client/api_datasource.py,sha256=9CPNsujgnp__EwkZGwu9ZTmOxSwOldfLraOEQ7GBLng,14490
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  tol/api_client/client.py,sha256=gcnX4iCZtjnCC6qylizXxLe3l6xLhME6LEJH0UeW7V4,13979
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- tol/api_client/converter.py,sha256=X6VPk4nrvmXF8EOXy36sn1nvPvYTBYKZ66ofxyQbaY8,4681
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+ tol/api_client/converter.py,sha256=g32fjqga4mC923n95HmQImPuawMfeb9rQcl3ZxUWP2s,4463
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  tol/api_client/exception.py,sha256=MkvJaIyRVCzQ2rKOYnCOcT747mpOeQwGJJl3Kkb1BsQ,3999
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- tol/api_client/factory.py,sha256=DIYFmFsQlwOCrUfexiEMBN3ovnreMqUFYNU8hcNvSao,3405
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+ tol/api_client/factory.py,sha256=WGHA5wio4XS8OHqG07DLSVjehOeAsVoVCc5phAIq4H8,3737
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  tol/api_client/filter.py,sha256=D49RIai5Yj4CiQvIkgaEIXdw_oSU7CD5cn9SdXWRYXU,1474
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- tol/api_client/parser.py,sha256=67GxGyhb5goVhXQqry7-YKvh9YozC_MkQMFiaAeHPKk,5423
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+ tol/api_client/parser.py,sha256=88Q2RlPwn9JJsSIukC2_yxfaM2AaXjsGuDOESqY7se4,8351
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  tol/api_client/validate.py,sha256=9wFZotTJ4fI21BdO5AuMZok0rDQ4s8zM_WojLdVvA0A,3071
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- tol/api_client/view.py,sha256=a0TzPtXhJfVv70exJ86BEZv_oaeXDyitKsj6R5sG3wE,6102
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+ tol/api_client/view.py,sha256=DvhRTA957Fn5vVPByV7e8ngvJaD9DSa5SaJ48ONWQlU,8753
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@@ -83,24 +84,24 @@ tol/copo/converter.py,sha256=DnJvIysyVLa1b4hIK0o146ruuxKBYhEDN4kxKxl7Uuc,1127
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- tol/core/__init__.py,sha256=svFcEWLhqgA0hLfFkrN9xWaSLqkC2MDHrBSnUjCGYGE,1124
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+ tol/core/__init__.py,sha256=ifE1Ji2RF-RWNzo3HTsEKfLIpkRrIBNBPKDwpvzPoMk,1149
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- tol/core/data_object.py,sha256=KLPSXpg0OM7NpaHkwzfldaI_4521odqABA8SyLjthII,3770
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- tol/core/data_object_converter.py,sha256=YWlwxDUXZjhkVPbIoVtQNP88vLYeX2vO9CZELNHw4Wo,2840
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+ tol/core/data_object.py,sha256=GxG04JMcICaiHU1rufkhoD8jb9YQLhE0QWlFU2ZkQsM,4241
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+ tol/core/data_object_converter.py,sha256=zIGcin3jcoswBfsuUe74C2nxpyzvhHkP4_ZwKZWxh_Y,3765
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- tol/core/factory.py,sha256=e0jXNS9NJvSrsbKUe9j19CElaSnKIB0j2pPCpcMa8wU,9273
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+ tol/core/factory.py,sha256=pLLu8l-yK8QaLTt52izMhKZ2VlFHqRQlUHwMaLL6DI4,9156
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- tol/core/validate.py,sha256=84etPczrGDkqdrNnj4GSrPAeKxYcz8qUy5szJa2QRGY,4082
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+ tol/core/validate.py,sha256=kFRPhgYyeZisGbSXR7S1pmD8jvz_aZ7RX40bT-gD_iA,4083
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@@ -132,13 +133,13 @@ tol/eln/entities.py,sha256=3-Z4ibZR11zepz5Nw74PnkpxA_HA31FsRUx61FSPYUo,1209
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- tol/ena/client.py,sha256=dYrclPK9KSx464DGt0fa3iVy4H5ODBKwPybIHeYggm4,4878
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+ tol/ena/client.py,sha256=0LzSzUuCAV5tRQwArROZnfHFpscG0i0a8jGOMpKlk3c,6624
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- tol/ena/ena_datasource.py,sha256=paOC7ujzhpPzhK2CAhqy2RdSFFkOFbVd0om6biABy84,8608
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- tol/ena/ena_methods.py,sha256=qOStTxao1eMBAyVdTCRKldxLr8rDH5mC-G0GUSfFJFw,8887
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+ tol/ena/ena_datasource.py,sha256=jEvyUaH4pfFxmdtn6O_PwOdjPz6u80uAT3SLlR2f5nM,8968
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+ tol/ena/ena_methods.py,sha256=jgpLssZq-F-vgkO-fYu4jrXenmNkdFpFKAY3VKp5HHE,9209
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- tol/ena/parser.py,sha256=8ZyGBA6HbhgjxHDTo9NDot5xSbD-4Y7gzPIKzkQT_D8,2648
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+ tol/ena/parser.py,sha256=Z4YmUnpfLKng4QwmZkLEj1hUfwYb_bqr-DWgF1Gw-EY,3253
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@@ -237,13 +238,11 @@ tol/prefect/factory.py,sha256=mO4KVnaEYMv-ojGJuiencNQMq6PAMU8cIc4QN5Kq8Gw,2208
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- tol/s3/__init__.py,sha256=AnYM6rWRDJ-AkUBPuIFGrF3wyeh7euwUCiv2-gPy9J4,351
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+ tol/s3/__init__.py,sha256=L2Aa12NAYjTRr8W_ArJi3z3ME2bUtCf4CG3JDw1MoMk,282
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- tol/s3/data_upload/__init__.py,sha256=4dkK7MPB0CzkkujFSVj0FzoG5ri_usQ7XaBB81Vc_qE,85
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@@ -293,11 +292,11 @@ tol/sql/exception.py,sha256=8c9KOVVNlLhqKU4CfsnxR7sd-JhEMnCk3TQ-s9JyogM,544
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+ tol/sql/sql_converter.py,sha256=taD5FRwadvw2bBaUGrCIiUs0-ATAbBnRYI1M7xe3yEc,4618
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@@ -305,7 +304,7 @@ tol/sql/auth/__init__.py,sha256=e3JuwugXmXobklqZ1Mt1w03qPgb1WdUaJVM7oblzHyk,202
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+ tol/sql/pipeline_step/factory.py,sha256=E5_Bs1379UGlRajKnb77iPmqhXBMemQR1C53SSPjXB4,5134
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@@ -319,15 +318,26 @@ tol/treeval/treeval_datasource.py,sha256=GzY6JwH67b5QdV-UVdCFJfgGAIuZ96J2nl53YxZ
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  tol/utils/s3.py,sha256=aoYCwJ-qcMqFrpxmViFqPa0O1jgp0phtztO3-0CSNjw,491
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- tol/validators/__init__.py,sha256=bIMjfuRd358nUPLp6fMG9nTs43gM9aA9oY_AINgxkWU,379
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- tol/validators/allowed_keys.py,sha256=BJMomJtaQdxsdGsueDtLewv75TlwdIXiQipLGFcJ7_c,1331
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- tol/validators/allowed_values.py,sha256=yJ5SdiUlV7PSKORtsBJ9hYSqwvlx_esbFmFL_Gxh-p4,2262
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- tol/validators/regex.py,sha256=dKodGH0sv6DbqWeV6QXE6-GYjnG4rMO0rg8IEIaQG60,2364
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- tol/validators/regex_by_value.py,sha256=o99NJlWPgQ0GrpVnep8-cHfjWnc9F2rChmXHIxjrMrk,2543
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- tol/validators/unique_values.py,sha256=tEXDNJj95XUJdhsZlO-pkXdQz-EYaSG-mcp4MDTL7eY,2835
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- tol_sdk-1.7.4.dist-info/licenses/LICENSE,sha256=RF9Jacy-9BpUAQQ20INhTgtaNBkmdTolYCHtrrkM2-8,1077
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- tol_sdk-1.7.4.dist-info/METADATA,sha256=1gosjFEvdmraYpLVv81dHvwCKBFGXDUdz__wwvImdLo,3079
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- tol_sdk-1.7.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- tol_sdk-1.7.4.dist-info/entry_points.txt,sha256=jH3HfTwxjzog7E3lq8CKpUWGIRY9FSXbyL6CpUmv6D0,36
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- tol_sdk-1.7.4.dist-info/top_level.txt,sha256=PwKMQLphyZNvagBoriVbl8uwHXQl8IC1niawVG0iXMM,10
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- tol_sdk-1.7.4.dist-info/RECORD,,
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+ tol/validators/__init__.py,sha256=ch1rBBNx28lFABIbq79gdbKnNdV1UTnQQwxkks2g_CA,1083
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+ tol/validators/allowed_keys.py,sha256=fX4KqpxOJNmmVNqQq215MtX27v4dbKSjCM1laXuXfZE,1488
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+ tol/validators/allowed_values.py,sha256=Sxsb6EhiR8Ey90sfPoyGqkehkJN0hHSNXlLYSL_k5f4,1518
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+ tol/validators/allowed_values_from_datasource.py,sha256=JYF8y-NxFpJh-j2cNWizwIHk6TPQ3lgbnlt3ZXLTGzE,3249
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+ tol/validators/assert_on_condition.py,sha256=PFPqwzMicVRp8JAZZaGz1btfMNSvRzBWWZzWtheYfDI,1952
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+ tol/validators/ena_submittable.py,sha256=ruryfVcQtRJ5JsAFBcVZ_3hzTDwRWGXpdPUAfdrYmWg,1948
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+ tol/validators/min_one_valid_value.py,sha256=3Fv-b-fojvPLpiWwUqrFfO0YMGtV40KEp15zTmdOlyI,1425
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+ tol/validators/mutually_exclusive.py,sha256=d21WRsph18JkiWx2JmCML4gM304AQ4eyt3U4vT7aZ2A,4247
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+ tol/validators/regex.py,sha256=q78OrSELZRwb5LPHAm75fWsMx8RChmWqWrSLbrNDugM,2019
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+ tol/validators/regex_by_value.py,sha256=7wheyYZkKW75UhqZPn_dL3pb6F6N1OoipTl9hujVEQ0,1981
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+ tol/validators/specimens_have_same_taxon.py,sha256=BrkYXhr1KVnJcDe-PrKXf0AF9740BbFV2XVMrtu98CQ,2167
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+ tol/validators/sts_fields.py,sha256=piHqdzuGepIEv-ZSSwdkYE6ybQpqc4hBN8hN8UrN4Vg,3442
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+ tol/validators/tolid.py,sha256=T1e92X3uVzKDEkf-SOKjB7aJAy2p7bL0SI9uKji4RFY,3869
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+ tol/validators/unique_values.py,sha256=CZvIdg7GC2VmVAGuPToxJ_r-2YCwy2xkQKp2qwVwbzU,3096
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+ tol/validators/unique_whole_organisms.py,sha256=Z-PUjlCcn-WHDKMYDyt_WhalXzQFfqLWItM6qywVt_Y,5725
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+ tol/validators/interfaces/__init__.py,sha256=l9jsty1Czoa3Ipmc-u6Wdy1QD23nv7efJ5CiyqSGGR0,157
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+ tol/validators/interfaces/condition_evaluator.py,sha256=hF_S1SEAxTjF43jlsv-fR5Dux9KEBnbwQwsKcgwzXl4,2246
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+ tol_sdk-1.7.5b0.dist-info/licenses/LICENSE,sha256=RF9Jacy-9BpUAQQ20INhTgtaNBkmdTolYCHtrrkM2-8,1077
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+ tol_sdk-1.7.5b0.dist-info/METADATA,sha256=kFF-51RamzYZ4SjsVGblDAD4IXkNZrvPIlTfEzv6VpE,3081
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+ tol_sdk-1.7.5b0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ tol_sdk-1.7.5b0.dist-info/entry_points.txt,sha256=jH3HfTwxjzog7E3lq8CKpUWGIRY9FSXbyL6CpUmv6D0,36
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+ tol_sdk-1.7.5b0.dist-info/top_level.txt,sha256=PwKMQLphyZNvagBoriVbl8uwHXQl8IC1niawVG0iXMM,10
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+ tol_sdk-1.7.5b0.dist-info/RECORD,,