toil 9.1.1__py3-none-any.whl → 9.1.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. toil/leader.py +3 -8
  2. toil/version.py +5 -5
  3. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/METADATA +1 -1
  4. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/RECORD +8 -8
  5. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/WHEEL +0 -0
  6. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/entry_points.txt +0 -0
  7. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/licenses/LICENSE +0 -0
  8. {toil-9.1.1.dist-info → toil-9.1.2.dist-info}/top_level.txt +0 -0
toil/leader.py CHANGED
@@ -349,14 +349,9 @@ class Leader:
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  def create_status_sentinel_file(self, fail: bool) -> None:
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  """Create a file in the jobstore indicating failure or success."""
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  logName = "failed.log" if fail else "succeeded.log"
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- localLog = os.path.join(os.getcwd(), logName)
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- open(localLog, "w").close()
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- self.jobStore.import_file("file://" + localLog, logName, hardlink=True)
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-
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- if os.path.exists(
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- localLog
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- ): # Bandaid for Jenkins tests failing stochastically and unexplainably.
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- os.remove(localLog)
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+ with self.jobStore.write_shared_file_stream(logName) as file_handle:
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+ # We just need an empty file, so don't write any content
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+ pass
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  def _handledFailedSuccessor(self, successor_id: str, predecessor_id: str) -> bool:
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  """
toil/version.py CHANGED
@@ -1,13 +1,13 @@
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- baseVersion = '9.1.1'
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+ baseVersion = '9.1.2'
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  cgcloudVersion = '1.6.0a1.dev393'
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- version = '9.1.1-f654a3c80f5318ae2ec2e5ecb278a05e1e844a58'
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+ version = '9.1.2-355b72ba0e425619c0367562caf2a337078dba65'
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  cacheTag = 'cache-local-py3.9'
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  mainCacheTag = 'cache-master-py3.9'
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- distVersion = '9.1.1'
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+ distVersion = '9.1.2'
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  exactPython = 'python3.9'
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  python = 'python3.9'
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- dockerTag = '9.1.1-f654a3c80f5318ae2ec2e5ecb278a05e1e844a58-py3.9'
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- currentCommit = 'f654a3c80f5318ae2ec2e5ecb278a05e1e844a58'
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+ dockerTag = '9.1.2-355b72ba0e425619c0367562caf2a337078dba65-py3.9'
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+ currentCommit = '355b72ba0e425619c0367562caf2a337078dba65'
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  dockerRegistry = 'quay.io/ucsc_cgl'
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  dockerName = 'toil'
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  dirty = False
{toil-9.1.1.dist-info → toil-9.1.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: toil
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- Version: 9.1.1
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+ Version: 9.1.2
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  Summary: Pipeline management software for clusters.
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  Home-page: https://github.com/DataBiosphere/toil
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  Author: Benedict Paten and the Toil community
{toil-9.1.1.dist-info → toil-9.1.2.dist-info}/RECORD RENAMED
@@ -4,13 +4,13 @@ toil/common.py,sha256=SCcqojtspk3oqwStKUx-daP7fMCgWQ8TWBgh7WNcSRY,83253
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  toil/deferred.py,sha256=2ShsuPqDwu0jhBQ6ocMwe4lfNegBm2lj7dOG9E7X3Zc,14152
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  toil/exceptions.py,sha256=oL2d9uutwtcPkMcEUGrixKUd4y1JLSA0-N7hNJqCLSk,1883
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  toil/job.py,sha256=KGcmuzoCFtWakl_y4LwBlo8Uuh1-FnGqHOXc_BwAF0A,175901
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- toil/leader.py,sha256=abI47MI8zUlWZCjFce2QMwoFF9-QQ1aF8kWn7qKtrpM,85829
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+ toil/leader.py,sha256=jyx9pRREOfbA8X-IfVQmhNv34UvhmUJfm2Tr6-oqKwc,85659
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  toil/realtimeLogger.py,sha256=2O4AUaKtvItzzCAQKORIEHZ2cDoLf_6njoKWv_uzdFc,9878
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  toil/resource.py,sha256=2LmdM6zqjG_aYqQ25UixpkdKipLYnKngMGhll4I-O6M,25349
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  toil/serviceManager.py,sha256=GE5IUjQmNrekYv9tclim0RlCFf4ueOQ2H4qHjMBrOcg,19978
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  toil/statsAndLogging.py,sha256=JXir7TCV8OdDaAdt3VsDR2rbdNWk4ILyOwlKHVdoXT0,18696
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  toil/toilState.py,sha256=DD52XQv8wRCYzF7-F6Olqa_k6u-_py-JWyjqJHRh6Z0,17989
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- toil/version.py,sha256=BddPhxnAGVCb3Qc7AXduzi7u3NQLYpaKxsg1dtQzWag,486
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+ toil/version.py,sha256=1R_b63zYENcFZU5lPdbYiY-fe6Wfugp63fYEbhmEcaA,486
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  toil/worker.py,sha256=uEU3BnmFS-SQf2JW6FDvcf7t8uUXFXiInaJLTt8l9Lk,39315
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  toil/batchSystems/__init__.py,sha256=T8psI5GmvE71_XmajKsfeQ3YUs6XM7rX1Fy9VNUX_-Q,1036
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  toil/batchSystems/abstractBatchSystem.py,sha256=yOsKGlKOADtBhsG6OVvBY2yRJREJtPd84WisE47xBO0,33803
@@ -444,9 +444,9 @@ toil/utils/toilUpdateEC2Instances.py,sha256=47972f1_oRvKOZv77EcBr3QjP2YNl8SZWhTs
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  toil/wdl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  toil/wdl/utils.py,sha256=U0TqbVTsap0VdeZjrUf4l71A7Zns-Hkso1B1Zdp2LRk,1316
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  toil/wdl/wdltoil.py,sha256=DKGkqbGjjEaXt9QrnSKDzEE3JuAMNzE_jc9cxyibk7c,265992
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- toil-9.1.1.dist-info/licenses/LICENSE,sha256=YVxVi652J1ZDmtC3EMP5r0EbK85-hm_pzogiULmlqUA,12862
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- toil-9.1.1.dist-info/METADATA,sha256=__E7Qc3gMoOZf0U8AWTtBXtarqwFA8e-zpegiV35-Do,8695
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- toil-9.1.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- toil-9.1.1.dist-info/entry_points.txt,sha256=EF2yFhV2UYuJGr-OjMkUOd3RyOCgRWQbS6XJtBJ25eM,436
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- toil-9.1.1.dist-info/top_level.txt,sha256=1ydj7IXvHS9tMT5OVTSSpub6ZOaQeIn3KGCgJqaikF0,5
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- toil-9.1.1.dist-info/RECORD,,
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+ toil-9.1.2.dist-info/licenses/LICENSE,sha256=YVxVi652J1ZDmtC3EMP5r0EbK85-hm_pzogiULmlqUA,12862
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+ toil-9.1.2.dist-info/METADATA,sha256=jNXFOpp2P2OkDd2zNWN_RGSuhnsxXvWaxin8lgBE3B4,8695
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+ toil-9.1.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ toil-9.1.2.dist-info/entry_points.txt,sha256=EF2yFhV2UYuJGr-OjMkUOd3RyOCgRWQbS6XJtBJ25eM,436
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+ toil-9.1.2.dist-info/top_level.txt,sha256=1ydj7IXvHS9tMT5OVTSSpub6ZOaQeIn3KGCgJqaikF0,5
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+ toil-9.1.2.dist-info/RECORD,,
{toil-9.1.1.dist-info → toil-9.1.2.dist-info}/WHEEL RENAMED
File without changes