toil 8.2.0__py3-none-any.whl → 9.1.0__py3-none-any.whl

toil/worker.py

@@ -224,12 +224,17 @@ def unstick_worker(interval: float = 120, timeout: float = 120) -> None:
         # We also want to handle the case where the child process gets so
         # gummed up that it can't exit when killed.
 
-        # Preserve errors form child process but not output
-        child = subprocess.Popen(
-            ["lsof", "-p", str(pid)],
-            stdin=subprocess.DEVNULL,
-            stdout=subprocess.DEVNULL,
-        )
+        try:
+            child = subprocess.Popen(
+                ["lsof", "-p", str(pid)],
+                stdin=subprocess.DEVNULL,
+                stdout=subprocess.DEVNULL,
+                stderr=subprocess.DEVNULL,
+            )
+        except FileNotFoundError:
+            # If there isn't an lsof, don't try and use it.
+            logger.info("lsof is not available. We will not be able to use it to unstick a stuck Toil leader.")
+            return
         try:
             child.wait(timeout=timeout)
         except subprocess.TimeoutExpired:
@@ -539,6 +544,7 @@ def workerScript(
         startClock = ResourceMonitor.get_total_cpu_time()
 
         startTime = time.time()
+        fileStore = None
         while True:
             ##########################################
             # Run the job body, if there is one
@@ -684,8 +690,10 @@ def workerScript(
         totalCPUTime, totalMemoryUsage = (
             ResourceMonitor.get_total_cpu_time_and_memory_usage()
         )
-        statsDict.workers.time = str(time.time() - startTime)
-        statsDict.workers.clock = str(totalCPUTime - startClock)
+        chain_wall_time = time.time() - startTime
+        chain_cpu_time = totalCPUTime - startClock
+        statsDict.workers.time = str(chain_wall_time)
+        statsDict.workers.clock = str(chain_cpu_time)
         statsDict.workers.memory = str(totalMemoryUsage)
         # Say the worker used the max disk we saw from any job
         max_bytes = 0

{toil-8.2.0.dist-info → toil-9.1.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: toil
-Version: 8.2.0
+Version: 9.1.0
 Summary: Pipeline management software for clusters.
 Home-page: https://github.com/DataBiosphere/toil
 Author: Benedict Paten and the Toil community
@@ -33,7 +33,7 @@ Requires-Python: >=3.9
 Description-Content-Type: text/x-rst
 License-File: LICENSE
 Requires-Dist: dill<0.4,>=0.3.2
-Requires-Dist: requests<=2.31.0
+Requires-Dist: requests<=2.32.5
 Requires-Dist: docker<8,>=6.1.0
 Requires-Dist: urllib3<3,>=1.26.0
 Requires-Dist: python-dateutil
@@ -53,12 +53,12 @@ Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts]<2,>=1.28.3.post
 Requires-Dist: mypy-boto3-iam<2,>=1.28.3.post2; extra == "aws"
 Requires-Dist: mypy-boto3-s3<2,>=1.28.3.post2; extra == "aws"
 Requires-Dist: moto<6,>=5.0.3; extra == "aws"
-Requires-Dist: ec2_metadata<3; extra == "aws"
+Requires-Dist: ec2_metadata<3,>=2.14.0; extra == "aws"
 Provides-Extra: cwl
-Requires-Dist: cwltool==3.1.20250110105449; extra == "cwl"
+Requires-Dist: cwltool==3.1.20250715140722; extra == "cwl"
 Requires-Dist: schema-salad<9,>=8.4.20230128170514; extra == "cwl"
-Requires-Dist: galaxy-tool-util<25; extra == "cwl"
-Requires-Dist: galaxy-util<25; extra == "cwl"
+Requires-Dist: galaxy-tool-util<26; extra == "cwl"
+Requires-Dist: galaxy-util<26; extra == "cwl"
 Requires-Dist: ruamel.yaml<=0.19,>=0.15; extra == "cwl"
 Requires-Dist: ruamel.yaml.clib>=0.2.6; extra == "cwl"
 Requires-Dist: networkx!=2.8.1,<4; extra == "cwl"
@@ -67,28 +67,28 @@ Requires-Dist: cwl-utils>=0.36; extra == "cwl"
 Provides-Extra: encryption
 Requires-Dist: pynacl<2,>=1.4.0; extra == "encryption"
 Provides-Extra: google
-Requires-Dist: apache-libcloud<3,>=2.2.1; extra == "google"
+Requires-Dist: apache-libcloud<4,>=3.6.1; extra == "google"
 Requires-Dist: google-cloud-storage<=2.8.0,>=2; extra == "google"
 Requires-Dist: google-auth<3,>=2.18.1; extra == "google"
 Provides-Extra: kubernetes
-Requires-Dist: kubernetes<33,>=12.0.1; extra == "kubernetes"
+Requires-Dist: kubernetes<34,>=12.0.1; extra == "kubernetes"
 Requires-Dist: kubernetes-stubs==v22.6.0post1; extra == "kubernetes"
 Requires-Dist: types-urllib3; extra == "kubernetes"
 Requires-Dist: types-PyYAML; extra == "kubernetes"
 Requires-Dist: idna>=2; extra == "kubernetes"
 Provides-Extra: wdl
-Requires-Dist: miniwdl==1.12.1; extra == "wdl"
+Requires-Dist: miniwdl==1.13.0; extra == "wdl"
 Requires-Dist: wdlparse==0.1.0; extra == "wdl"
 Requires-Dist: graphlib-backport==1.0; python_version < "3.9" and extra == "wdl"
 Provides-Extra: server
-Requires-Dist: connexion[swagger-ui]<4,>=2.10.0; extra == "server"
-Requires-Dist: flask<2.3,>=2.0; extra == "server"
-Requires-Dist: werkzeug<4,>=2.0; extra == "server"
-Requires-Dist: flask-cors==5.0.1; extra == "server"
-Requires-Dist: gunicorn==23.0.0; extra == "server"
-Requires-Dist: celery<6,>=5.1.0; extra == "server"
-Requires-Dist: wes-service<5,>=4.0.0; extra == "server"
-Requires-Dist: ruamel.yaml<0.19,>=0.15; extra == "server"
+Requires-Dist: connexion[swagger-ui]<4,>=3; extra == "server"
+Requires-Dist: flask<4,>=3; extra == "server"
+Requires-Dist: werkzeug<4,>=3; extra == "server"
+Requires-Dist: flask-cors<7,>=5.0.1; extra == "server"
+Requires-Dist: gunicorn<24,>=23.0.0; extra == "server"
+Requires-Dist: celery<6,>=5.4.0; extra == "server"
+Requires-Dist: wes-service<6,>=5.0.0; extra == "server"
+Requires-Dist: ruamel.yaml<1,>=0.18.7; extra == "server"
 Provides-Extra: htcondor
 Requires-Dist: htcondor<25,>=23.6.0; sys_platform != "darwin" and extra == "htcondor"
 Provides-Extra: mesos
@@ -98,36 +98,36 @@ Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts]<2,>=1.28.3.post
 Requires-Dist: mypy-boto3-iam<2,>=1.28.3.post2; extra == "all"
 Requires-Dist: mypy-boto3-s3<2,>=1.28.3.post2; extra == "all"
 Requires-Dist: moto<6,>=5.0.3; extra == "all"
-Requires-Dist: ec2_metadata<3; extra == "all"
-Requires-Dist: cwltool==3.1.20250110105449; extra == "all"
+Requires-Dist: ec2_metadata<3,>=2.14.0; extra == "all"
+Requires-Dist: cwltool==3.1.20250715140722; extra == "all"
 Requires-Dist: schema-salad<9,>=8.4.20230128170514; extra == "all"
-Requires-Dist: galaxy-tool-util<25; extra == "all"
-Requires-Dist: galaxy-util<25; extra == "all"
+Requires-Dist: galaxy-tool-util<26; extra == "all"
+Requires-Dist: galaxy-util<26; extra == "all"
 Requires-Dist: ruamel.yaml<=0.19,>=0.15; extra == "all"
 Requires-Dist: ruamel.yaml.clib>=0.2.6; extra == "all"
 Requires-Dist: networkx!=2.8.1,<4; extra == "all"
 Requires-Dist: CacheControl[filecache]; extra == "all"
 Requires-Dist: cwl-utils>=0.36; extra == "all"
 Requires-Dist: pynacl<2,>=1.4.0; extra == "all"
-Requires-Dist: apache-libcloud<3,>=2.2.1; extra == "all"
+Requires-Dist: apache-libcloud<4,>=3.6.1; extra == "all"
 Requires-Dist: google-cloud-storage<=2.8.0,>=2; extra == "all"
 Requires-Dist: google-auth<3,>=2.18.1; extra == "all"
-Requires-Dist: kubernetes<33,>=12.0.1; extra == "all"
+Requires-Dist: kubernetes<34,>=12.0.1; extra == "all"
 Requires-Dist: kubernetes-stubs==v22.6.0post1; extra == "all"
 Requires-Dist: types-urllib3; extra == "all"
 Requires-Dist: types-PyYAML; extra == "all"
 Requires-Dist: idna>=2; extra == "all"
-Requires-Dist: miniwdl==1.12.1; extra == "all"
+Requires-Dist: miniwdl==1.13.0; extra == "all"
 Requires-Dist: wdlparse==0.1.0; extra == "all"
 Requires-Dist: graphlib-backport==1.0; python_version < "3.9" and extra == "all"
-Requires-Dist: connexion[swagger-ui]<4,>=2.10.0; extra == "all"
-Requires-Dist: flask<2.3,>=2.0; extra == "all"
-Requires-Dist: werkzeug<4,>=2.0; extra == "all"
-Requires-Dist: flask-cors==5.0.1; extra == "all"
-Requires-Dist: gunicorn==23.0.0; extra == "all"
-Requires-Dist: celery<6,>=5.1.0; extra == "all"
-Requires-Dist: wes-service<5,>=4.0.0; extra == "all"
-Requires-Dist: ruamel.yaml<0.19,>=0.15; extra == "all"
+Requires-Dist: connexion[swagger-ui]<4,>=3; extra == "all"
+Requires-Dist: flask<4,>=3; extra == "all"
+Requires-Dist: werkzeug<4,>=3; extra == "all"
+Requires-Dist: flask-cors<7,>=5.0.1; extra == "all"
+Requires-Dist: gunicorn<24,>=23.0.0; extra == "all"
+Requires-Dist: celery<6,>=5.4.0; extra == "all"
+Requires-Dist: wes-service<6,>=5.0.0; extra == "all"
+Requires-Dist: ruamel.yaml<1,>=0.18.7; extra == "all"
 Requires-Dist: pymesos<0.4,>=0.3.15; python_version < "3.11" and extra == "all"
 Dynamic: author
 Dynamic: author-email

{toil-8.2.0.dist-info → toil-9.1.0.dist-info}/RECORD

@@ -1,89 +1,94 @@
 toil/__init__.py,sha256=mgHlMg77mY5alLQDJJR0sudBWZ_kRajyPWIUOUu9OBc,18223
 toil/bus.py,sha256=Rr6oTGo5jtTJLtxycuPg-5U9fCqiDAvKMdlj7xYka8Q,30035
-toil/common.py,sha256=_ZlwED0nPEEaniPvkUEpcabu4K7TMaK7DphyasYYwe4,82485
+toil/common.py,sha256=SCcqojtspk3oqwStKUx-daP7fMCgWQ8TWBgh7WNcSRY,83253
 toil/deferred.py,sha256=2ShsuPqDwu0jhBQ6ocMwe4lfNegBm2lj7dOG9E7X3Zc,14152
 toil/exceptions.py,sha256=oL2d9uutwtcPkMcEUGrixKUd4y1JLSA0-N7hNJqCLSk,1883
-toil/job.py,sha256=0oFg6QNZCpyEKZu0zuzV5CWJGVTsloC6kdhTctw4PxE,175060
-toil/leader.py,sha256=qae1vsJYuuJW9fYYAl4nd-hVMvjfaWJ3Yf6eVsJwMLc,85512
+toil/job.py,sha256=KGcmuzoCFtWakl_y4LwBlo8Uuh1-FnGqHOXc_BwAF0A,175901
+toil/leader.py,sha256=abI47MI8zUlWZCjFce2QMwoFF9-QQ1aF8kWn7qKtrpM,85829
 toil/realtimeLogger.py,sha256=2O4AUaKtvItzzCAQKORIEHZ2cDoLf_6njoKWv_uzdFc,9878
-toil/resource.py,sha256=PlI6R28aYqfYLDsztjlAYpkVGfSr2O0DhrgDXpXJxa0,25650
+toil/resource.py,sha256=2LmdM6zqjG_aYqQ25UixpkdKipLYnKngMGhll4I-O6M,25349
 toil/serviceManager.py,sha256=GE5IUjQmNrekYv9tclim0RlCFf4ueOQ2H4qHjMBrOcg,19978
 toil/statsAndLogging.py,sha256=JXir7TCV8OdDaAdt3VsDR2rbdNWk4ILyOwlKHVdoXT0,18696
 toil/toilState.py,sha256=DD52XQv8wRCYzF7-F6Olqa_k6u-_py-JWyjqJHRh6Z0,17989
-toil/version.py,sha256=UwayJ-SLBE4wow4L_L1YZD2Y8l7zOWxYb8A6fmt0vR0,491
-toil/worker.py,sha256=ywdN4v8qz5CuNQgMJcOlOsVj7BcdqdWuoTp6mFCnE0Y,38967
+toil/version.py,sha256=CHyCVncfvUkQyL2LsngddgCkkBkhrtOF8yHxwkeLVYw,486
+toil/worker.py,sha256=uEU3BnmFS-SQf2JW6FDvcf7t8uUXFXiInaJLTt8l9Lk,39315
 toil/batchSystems/__init__.py,sha256=T8psI5GmvE71_XmajKsfeQ3YUs6XM7rX1Fy9VNUX_-Q,1036
-toil/batchSystems/abstractBatchSystem.py,sha256=ctlpC_Jzy761eXdx5aP2qQvAMdoTu0uk37p9XcMHGSU,33544
-toil/batchSystems/abstractGridEngineBatchSystem.py,sha256=NnVPOdgrASq_3Gwn0fcJUBgg2OrSNcknn1jXoan17xQ,24340
+toil/batchSystems/abstractBatchSystem.py,sha256=yOsKGlKOADtBhsG6OVvBY2yRJREJtPd84WisE47xBO0,33803
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 toil/batchSystems/awsBatch.py,sha256=ussXl20jE3daOxtUE5bH5ODZ2ynrqmFJczcOTXQsoSY,27300
 toil/batchSystems/cleanup_support.py,sha256=iWI-uNGwQWbBteWYzKWWZaL5wZBpRswHAtWdFU9VCKA,4056
 toil/batchSystems/contained_executor.py,sha256=2wP3sDyOanB2YrXxhdJ1PI3VohKK37ifgRya2F0rcMY,5111
 toil/batchSystems/gridengine.py,sha256=OL1SOQXV5vz7UwNSSZ2lKTRArkeaVRND5FyqQ8K8V20,8114
 toil/batchSystems/htcondor.py,sha256=nCylLUvRyX2k79LYriJgwhmowJBRekBWYUSpJgtawsY,18613
-toil/batchSystems/kubernetes.py,sha256=6ZGO1TCOSeuP3zr87gA65HWB3B2zGtq7x6l8dt7vouE,89219
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 toil/batchSystems/local_support.py,sha256=lq3VcjSgRvaXqXHWdxhzvUOfCl0i16eJ7YtGx1esFZU,3895
 toil/batchSystems/lsf.py,sha256=rQJe6dpnqs-LAZ0qaAo94VtxvhADwv8XzRTrQulp-mQ,18089
 toil/batchSystems/lsfHelper.py,sha256=IE5y-x-Mofau7jksWjBdTLt5dVvyj-w8dd3gqwZ-r8o,7227
 toil/batchSystems/options.py,sha256=HZ4nI2paKxulcWOd81R3p_j7BE4j2U9ZjWehDKaoyaA,8155
-toil/batchSystems/registry.py,sha256=eizqlhn4AdBzykdOFu_S5ZcU4eYpMB_vDTb8ml6W3Kw,6701
+toil/batchSystems/registry.py,sha256=PjWcsJ-ohiZiruqopcKy7581xiZ9JeDF6xz-JE51u7I,3914
 toil/batchSystems/singleMachine.py,sha256=EerJZCoDCPODBqeDRs4SEKC8htLq22QFJnBmkFwYACA,40350
-toil/batchSystems/slurm.py,sha256=GgktcOVWCOQ3zFZNFDwxfoa5dU60TwV8HJwq1-OcJe4,43306
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 toil/batchSystems/torque.py,sha256=A3Pe1IvIltpJSoVulfEUrilr-Ok_8E9hf41jbHYYzjQ,11795
 toil/batchSystems/mesos/__init__.py,sha256=jkeRf24eXeOTdRibDzJtqKwXup47FseQS0UXKriKrxg,3554
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 toil/batchSystems/mesos/conftest.py,sha256=n1ZIXzZP0msJlZL_ZIG84trKifxFLRLr2uIr-EjDucQ,836
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 toil/batchSystems/mesos/test/__init__.py,sha256=dRAlqdSi5c-uTikMYFV8-_0tenUuWZniy72O5QxVFoQ,4779
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 toil/cwl/conftest.py,sha256=R6Jw5-PeTCK0rapfHmV_VJwVcqlVbO5w3cFUbaIWUnk,848
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 toil/fileStores/nonCachingFileStore.py,sha256=VsPoKz0Ln5HP-trLlAarqhqJIzdwpADfu8E_UJH4X9w,15806
 toil/jobStores/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/jobStores/abstractJobStore.py,sha256=KDXkMEzLNhsV0T2NJmfWLZwaax5lG7w_TOxTzlJsjiI,79283
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 toil/jobStores/conftest.py,sha256=xNy_u3dGZz0206dnixzYvAvT85a0HfkIJw9XbsiGJnM,837
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 toil/jobStores/aws/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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 toil/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/lib/accelerators.py,sha256=Gmfs9OHt_pV1PIfgOWP9AN8EWcqa281xolcZ_z0lcas,8015
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 toil/lib/bioio.py,sha256=vx29gpAT3HgJkwXrfDnkyqnx68QGy_40ZtB-V2Utl8w,2403
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 toil/lib/compatibility.py,sha256=pPPTJyk3GUZ8SdAv14a3v2HLWbNtcnsAFuCEbh36UZ4,1535
-toil/lib/conversions.py,sha256=CuOHhxpS8RFdp9U-oLSWmhSNLMKT7lqG5N5uhvxfCK4,5135
+toil/lib/conversions.py,sha256=gRWKXh51HLIfhSVqzvQC9r085wHy7dHeyW4ikryQMHo,5767
+toil/lib/directory.py,sha256=TYejRoWsfofGWFBb0m5oBqOqm5XEhwRZCV9ZLnScTzU,7369
 toil/lib/docker.py,sha256=tXyWSq7uzTgCLuyK8oF8c6Rx9k9F8Hh3QSbZxKctlvM,25671
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 toil/lib/aws/ami.py,sha256=SD728qocULXqWZmxPslcymukG-MxfNniMsBE9d1VVcM,9341
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 toil/lib/aws/iam.py,sha256=6qNJ6C61XVzbuPX1p-tcnEcabCjIultrVe9MrgcME04,18550
-toil/lib/aws/s3.py,sha256=accn7bSneZttfb91pZR_80gDhCgVX7Z4ZOKOwM-6u9w,1156
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 toil/lib/aws/session.py,sha256=96l_AGsyA3CpTJiOqPemuLWtGsV28K4DU6vjtDR-pxA,15033
-toil/lib/aws/utils.py,sha256=gk75XIj1Nlw8fN_KoaRb8n-rONmAtAuF2wYUqiev_2E,22205
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 toil/lib/aws/utils.py.orig,sha256=1zR2bg0-mP-SM46MRZb-7s4O_9K5IOZ5_v92WItpmUs,22244
 toil/lib/encryption/__init__.py,sha256=HP19EUYJeIMdjZq11fLn_dXIGU98sIkpTxvMxvPaUSs,705
 toil/lib/encryption/_dummy.py,sha256=6e2fthd6YdgFUgY0kjGb2052KLWUeXD_ejeoCTAThLU,1082
@@ -91,18 +96,18 @@ toil/lib/encryption/_nacl.py,sha256=_EL8LrF5T5DT0dhNIlyIxDB8c8irGe9nJVh1Sn7mFkA,
 toil/lib/encryption/conftest.py,sha256=jCrRo2AtsGaO6hitm-wkNOTAU78JWSVA52E0hZdMpq8,227
 toil/options/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/options/common.py,sha256=vUMadLlEze1Wks7F1ZcVk9tsAIQMbxVQePJx-KxCNVk,46257
-toil/options/cwl.py,sha256=-KdV5S345Ry-DzmngP_8nHTByeC5UKzEa48Fz-a_1vg,14002
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-toil/options/wdl.py,sha256=pxXhh35dWT2AnnM8Dek3oJoVvbAE6Sc38cDsB_9H7qw,3467
-toil/provisioners/__init__.py,sha256=Z3OV95yx77LBVRUtjX_J8r_0OSC2glAIo5y7irbB-S0,9794
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 toil/provisioners/abstractProvisioner.py,sha256=R3OuUV2p8GWWuRs2PbaHkjHufOLyoknUaHq4vKPVGMc,58000
 toil/provisioners/clusterScaler.py,sha256=9FgnSPbn2U_FYUSJUeN67A0kdh-Yl0roi5nZLeJVr_I,64980
 toil/provisioners/gceProvisioner.py,sha256=8OsbSZeMgAB9l03zQ9WdKZ2-zFrHyzgXoLNdGKjdYcU,24212
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-toil/provisioners/aws/awsProvisioner.py,sha256=Fd2twLvxKeDKfPw-HoxOdgtJqLajwVVJ1VqhDqt-D0I,89097
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 toil/server/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/server/app.py,sha256=Xi8ZYs0qKsg1ISNETiYjMtt_qxrou3NuHZcx9bu3MNU,7048
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 toil/server/celery_app.py,sha256=PbdwRb7tY5MU4PkPgFZkq7CMiCe6LHBxw5YgcbdsKIE,663
 toil/server/utils.py,sha256=HLZb3-HtHqf5QYP3rlSK6C-Av_YxexYrYCcwrcmDP_0,21942
 toil/server/wsgi_app.py,sha256=3V3xr80F4uJUzeBbTbPI1uKJ3FUcI-H_8T1eiiEM5iw,1959
@@ -111,20 +116,20 @@ toil/server/api_spec/README.rst,sha256=NMhLwWqNgKd6r3CWeMVIv6jr4w7bxgGNxSescauUQ
 toil/server/api_spec/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/server/api_spec/workflow_execution_service.swagger.yaml,sha256=zZ2QepvbpvLROIcVIHWrcQLUwXEqGfm68fmkdrx8rw8,25377
 toil/server/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/server/cli/wes_cwl_runner.py,sha256=geQq9c7s_kgG03aoYnsjOFwIKwGztq-cp39_QjaLI0g,18577
+toil/server/cli/wes_cwl_runner.py,sha256=Bf5SYRRFrWS2ELyM3CN2lsfuWjEsKQQ9TQ7qsGgIrmw,18578
 toil/server/wes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/server/wes/abstract_backend.py,sha256=d8IA2Fepwr9g6BU-CO3VBvODiPswsps9rPcOKUUvD8k,10202
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 toil/server/wes/amazon_wes_utils.py,sha256=xRrV7hiWoWVwxJykgL2HQdMf1FZg73eqEBltKXya1Fc,10287
 toil/server/wes/tasks.py,sha256=DBjUUbxY6mq0H4aB8qiGhatmz6qWJWHkHPgfAqSr37w,24746
-toil/server/wes/toil_backend.py,sha256=GaBhjr2evNwV07QiAiQf6GgDRGxiX1SblkLTEa7-WFo,27499
-toil/test/__init__.py,sha256=xIdXggxpZw1yQwr5rm75RHdQoJtsN5dvMVP1YB0A-os,49260
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 toil/test/conftest.py,sha256=JADYg_YbV_b28B970KcOqh4UYAhjpqwHxdQj4vt0xeE,237
 toil/test/batchSystems/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
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 toil/test/batchSystems/test_gridengine.py,sha256=kZCF7WIAmCF1LTPPWd4zC6piQr0UaKJ3kYKz5tsBal0,6353
 toil/test/batchSystems/test_lsf_helper.py,sha256=JICnAPvU7HfqJ0RhIpC-IFfHLKftOAAQF2Iqc7nFs30,4697
-toil/test/batchSystems/test_slurm.py,sha256=998C-m8sKBlYGSIz8XJ5Br_TnuCZT2JOaHtUUz4WHkQ,28565
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 toil/test/cactus/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/cactus/pestis.tar.gz,sha256=pIzVl3PiXRAIZBtOQTlPD-tzzrC95JxJax5ykWeozD0,5762005
 toil/test/cactus/test_cactus_integration.py,sha256=4sRlsm7b29a08HNHFUbFu_gDW36TQeTfGBvRYUXNF_U,2219
@@ -137,7 +142,7 @@ toil/test/cwl/colon_test_output_job.yaml,sha256=BbXFRuWsRJV6JpJAutnHywJl_AbwEcwN
 toil/test/cwl/conditional_wf.cwl,sha256=SAtUSmD5ta-DVG0SRHpT8EtOp8ztm-6v9Vskcl09c3s,357
 toil/test/cwl/conditional_wf.yaml,sha256=WsS9dlpbRUll9M56KspQdOJ8h6SASTW7eRELefa274E,24
 toil/test/cwl/conftest.py,sha256=0RaeuccXuYPc3t-8_NR82uSA-jbuScfg1pgTnljpx9Q,2013
-toil/test/cwl/cwlTest.py,sha256=qtzNd44vIOCby2R2uzg0r8_DMR3YHCT0waRyyVf6Mcg,72589
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 toil/test/cwl/directory_from_directory.cwl,sha256=-hjZuUs5fMpKMnbj-FZAgcns4iWsCFJV6Qh7-fsRn1I,556
 toil/test/cwl/download.cwl,sha256=XQvz8or_-k6pwyhgeUeJOew0_b3BeHcF08EaalbySz4,296
 toil/test/cwl/download_directory.cwl,sha256=RdPmElFeHJqXGWVqEqR5VFMmXDiJubhTcM9hIrAhKY4,535
@@ -181,12 +186,16 @@ toil/test/cwl/scatter_duplicate_outputs.cwl,sha256=1ubeij5YQhjHe0igq5xL-Caje6ghe
 toil/test/cwl/seqtk_seq.cwl,sha256=uR7wlwxlNLkA_hIFglgiWGoOftQqFk4sH7Wo5zF60-c,406
 toil/test/cwl/seqtk_seq_job.json,sha256=R7ZKDllKq33U0vLRK7yvRAjKr26wU5cbdgdixG_4bnY,69
 toil/test/cwl/sorttool.cwl,sha256=c1fhFZ_ekTMuEAM0nikUPd2j-etPQL8MqyuSJLNadtc,1060
+toil/test/cwl/staging_cat.cwl,sha256=7rswT6E6ldaA2I9t0DxMyuqiSepGMsIerhGZLyItpvA,625
+toil/test/cwl/staging_make_file.cwl,sha256=l6HEfkg3Wd8JUBCFoMd86a6hvIJXMGF4THHd8FiO2hE,359
+toil/test/cwl/staging_workflow.cwl,sha256=bCNyjI_CvValQOU3nDq_dl4ZO2uMwkUTLdL0TBmt5TI,789
 toil/test/cwl/stream.cwl,sha256=jtyYdmSyCeI6uoOeX5Nb_LMIXhR5Sqmu8dGSr_Y2Z8g,732
 toil/test/cwl/stream.json,sha256=9-UG9jmoMeNKHcB0yfKiEURPsuBe8Btr80iob3tEKzo,132
 toil/test/cwl/test_filename_conflict_detection.cwl,sha256=wVrc9EXmO74tgaEe4oE-EMpmQiHIuUFbLh0-qVisVZo,699
 toil/test/cwl/test_filename_conflict_detection_at_root.cwl,sha256=G3clUTFeeGZt5xPi2SNs05W7I-RT0OEN2C8xKHzQ300,695
 toil/test/cwl/test_filename_conflict_resolution.cwl,sha256=sIoXi61RzCkzD1MTCoglRYAXo8xaE1JiC6irvSANK0I,717
 toil/test/cwl/whale.txt,sha256=MS7gbKfWkYSmPTP52eIzQFHSzZiRMwvCNleCZ1YTmhE,1111
+toil/test/cwl/zero_default.cwl,sha256=9fO0kdTpx1gfEc9mldtwBnMPPjHadSjLtQEGxnYFS5Q,1112
 toil/test/cwl/directory/directory/file.txt,sha256=vRp5WUxW_LwWXs2loofRuWHwB8gIR2XE7lzCGRBBRbU,146
 toil/test/cwl/mock_mpi/fake_mpi.yml,sha256=YtxcavXA2BbTx098_6pFRs4T9E34j-PrlJnuGCr7x9w,113
 toil/test/cwl/mock_mpi/fake_mpi_run.py,sha256=CvV6oDK_vGYZEIaINRxev1TaKs7NtzJSG8eMk3MrgeE,1165
@@ -204,7 +213,7 @@ toil/test/cwl/test_filename_conflict_resolution.ms/table.f5,sha256=47DEQpj8HBSa-
 toil/test/cwl/test_filename_conflict_resolution.ms/table.info,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/cwl/test_filename_conflict_resolution.ms/table.lock,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/docs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/test/docs/scriptsTest.py,sha256=UKtoAhBejHE7ID0LxibGSoDaHaZXCBHJlMwXqv7KD6s,5806
+toil/test/docs/scriptsTest.py,sha256=AEeKeWg-gKdywibzeqOCTUFbHRZ3BjBfPJmmxruFvCQ,5855
 toil/test/docs/scripts/example_alwaysfail.py,sha256=G5XKlky7OOh7R6Y9wlHFQp_PcFV3D6aewexInAuQF2k,761
 toil/test/docs/scripts/example_alwaysfail_with_files.wdl,sha256=XIStTSp03DK1Gd9OsDXOQTxATaeF_J212hK6nVjNlBs,549
 toil/test/docs/scripts/example_cachingbenchmark.py,sha256=WisGS4jWk2Raj9E53iiFdb2l8BXbUvDekPLu7kFNNtY,3335
@@ -230,12 +239,11 @@ toil/test/docs/scripts/tutorial_promises2.py,sha256=wSmEGzhkcbDdu5kk4lLj1e93ZpiN
 toil/test/docs/scripts/tutorial_quickstart.py,sha256=n6rdO1cUvB70K_UgLyE3MpRbs5AyhNCSgMOvvSmt9j4,544
 toil/test/docs/scripts/tutorial_requirements.py,sha256=4A93_9OQEUeVpmA7bPknaSdKEi5adMfGHKBaRO4R7bg,1012
 toil/test/docs/scripts/tutorial_services.py,sha256=IkH-JpG4ymR1yd8AUIbhOgPwNlltWFEmiMpV2w-lYxw,1124
-toil/test/docs/scripts/tutorial_staging.py,sha256=LXM9obfyrGHeU36yFfbcvbmJ79czedvok58RkBwxlf8,1365
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 toil/test/docs/scripts/tutorial_stats.py,sha256=eM0m4sjdgm9bkLpgf41nnX7MND9-JUWm_MuPfSFVk68,1762
-toil/test/docs/scripts/stagingExampleFiles/in.txt,sha256=gjjOyS8yW5TTMD-HmYuFwcfD5tQhbl23pv-x42qGK6s,7
 toil/test/docs/scripts/stagingExampleFiles/out.txt,sha256=1itR1QTwJkLatQA5Wa8MFVcJTH1J3MVEq6N6Cl2NHQ0,13
 toil/test/jobStores/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
-toil/test/jobStores/jobStoreTest.py,sha256=QEma-WTO-9kzp298LJXVUifXc1yP3OutKa3D0G7opkY,69620
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 toil/test/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/lib/dockerTest.py,sha256=uvxPeXwJg7FTK9t9JXDHTQHecg1I9jC86-CFcR05mvY,17221
 toil/test/lib/test_conversions.py,sha256=JSwdTRYklpofPV3VANHC7vHZ7WcpEWOZD6G9Tkjd45w,7232
@@ -243,10 +251,12 @@ toil/test/lib/test_ec2.py,sha256=p3GfCgSSLqZQ-oanHk1sdIuP1wVUwQvXKsXzWl5ow0I,418
 toil/test/lib/test_history.py,sha256=CKiWlTNbhhVEy3EpSohVGl4pg79p1iLhHQ340RzfKa8,8417
 toil/test/lib/test_misc.py,sha256=X1o4Dw1PcbnS1Y_gTR2q4STwqRjXYjSEUy2Q1BxeijM,2766
 toil/test/lib/test_trs.py,sha256=mcGn3boLFkjS_aPMOS-gwlFd7QcMVM-vpLadBnZb8SE,6918
+toil/test/lib/test_url.py,sha256=fWsi6yJEBahwfwWBKqcpalF2cUDfYG4aCk6BicJg-p0,2388
+toil/test/lib/url_plugin_test.py,sha256=7aXCIEIZ4cThcSqWwsfu5U_3QwhNxaI8WN-DTnB7CrA,3636
 toil/test/lib/aws/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-toil/test/lib/aws/test_iam.py,sha256=uSZZdGwwjJvxRDYfGoKGbWPx1kx6A61gVmb73LepLMU,7076
-toil/test/lib/aws/test_s3.py,sha256=NpYO0GnACbGpaKPwM0yeObxqBoFYJv92RUP7VdtompE,3061
-toil/test/lib/aws/test_utils.py,sha256=_JI_FfpyONfLE4HduibcAPF7_Y39MUx4H6wk7KqdWw8,2253
+toil/test/lib/aws/test_iam.py,sha256=Yx8vawHeo7tvGe1WTjajYD_Pw81ymb3Lluxi1ZVtNUc,7098
+toil/test/lib/aws/test_s3.py,sha256=WQp96eq4pSx7mjBWKeEyoZ2Cpne7cnSwgQ1lC10cLCk,3142
+toil/test/lib/aws/test_utils.py,sha256=OBgOhMeXHR4IefbzfBGACGOKoNm2K6xMC4MXSRi7UuA,2285
 toil/test/mesos/MesosDataStructuresTest.py,sha256=IcV-bNWJcMnij0WruhTk4RTmGROTTcU3pav5e4gHPfA,3225
 toil/test/mesos/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
 toil/test/mesos/helloWorld.py,sha256=xX65tKSBIKAxguBoAe-6Twp2XcBK1QEnKp5LRVImgK4,2204
@@ -255,26 +265,26 @@ toil/test/options/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k
 toil/test/options/options.py,sha256=xpp0PZKilYeXwkXUBszRZSC_LziX_rPi9shsQlemuuo,1474
 toil/test/provisioners/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
 toil/test/provisioners/clusterScalerTest.py,sha256=-Q5epOMHynfnlNZfpVXMU48puw_G9fyLiW8Gl8Qrk5o,44463
-toil/test/provisioners/clusterTest.py,sha256=KICXMM11ISAZ3fWjWddqDp4EDTQPsfpXAntYa_21c30,9639
-toil/test/provisioners/gceProvisionerTest.py,sha256=fkNBPPGqlA713Mp8kygvXZTd9dOKvbmDkvB9HIMMxuo,13630
+toil/test/provisioners/clusterTest.py,sha256=CpTEXear3WnsjszU__pvkOm19o5X27BzKyFA2TaVycc,10180
+toil/test/provisioners/gceProvisionerTest.py,sha256=eL3G66PzMqjB2ahXMTUd6rBGByJgtblp5_uItSyRHv4,13619
 toil/test/provisioners/provisionerTest.py,sha256=_JAvTs9bjynVpRkJI0VLPHZw-Y7kHI9B1vaWR4RomKA,2179
 toil/test/provisioners/restartScript.py,sha256=GodLqsIiYNxXFWQtyYHrxACI1fSUeGzcltO6qOdznj4,416
 toil/test/provisioners/aws/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
-toil/test/provisioners/aws/awsProvisionerTest.py,sha256=OVk0RvotdfRQt6Xu38M7nDK0BgXER9AnBk4y3pFaUi0,23764
+toil/test/provisioners/aws/awsProvisionerTest.py,sha256=JHkXHVez95-KQBSAwJwbfxy-j5_WYYD_9uesyw9WSgY,25266
 toil/test/server/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
-toil/test/server/serverTest.py,sha256=4daj22UNwzWXqTTTmgjDyIFeG8Js4iv-ZmBxeyHcjhs,27553
+toil/test/server/serverTest.py,sha256=2T9FD32-9uoGjtRC2mtJh67j9_3OWZgFONQmkA4f2tU,29399
 toil/test/sort/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
 toil/test/sort/restart_sort.py,sha256=A-1pWMhSIHSbtib-u1rvOFbhRqW_mQlf6dEbelFs7Q0,11358
 toil/test/sort/sort.py,sha256=H_f4DzLGSnkHpFRayYtJKkxlCAVcikuVR48MnuybrDI,11258
 toil/test/sort/sortTest.py,sha256=0dUZ0RCzE66bRcmOHJUD5MFg4UkSRbwhnHVkzX54wI4,12239
 toil/test/src/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
-toil/test/src/autoDeploymentTest.py,sha256=Oqy3j-jBeMCgu66wrxkDVUKFdqvkQ7aMj7GN6gKG7cE,23947
+toil/test/src/autoDeploymentTest.py,sha256=GSflx0XQ_gQQ8tHVouR0GJ_1oDyVYdS8gaK9tpIV9Rg,23898
 toil/test/src/busTest.py,sha256=N49fTwZFT7kTt5a-9xxoxJTjoMnjvIPwyJdmX9N7nac,5353
 toil/test/src/checkpointTest.py,sha256=LahYir7B3FNttP4OhbiYFKjxIftjTiuIXHC83xsxzNI,4464
 toil/test/src/deferredFunctionTest.py,sha256=y8AAnmmn7VYbJozukKQFE3mx-vw9O6o6oeCiGv4PkeA,13355
 toil/test/src/dockerCheckTest.py,sha256=CuXBewb1ba4rOO3YOrmChxPvdOfJGXNcT8P47HcaY1g,4407
 toil/test/src/environmentTest.py,sha256=k-WsZ3-9Xn0Vctd8tBQTPR_fVqY-f1VHC5U3_d7qdd4,4239
-toil/test/src/fileStoreTest.py,sha256=7Rh9qRGEB5nBdcerRz-7QLfq47pyfS1XQSKCOaQQS3w,73186
+toil/test/src/fileStoreTest.py,sha256=AZ9OazR5zRhUnH4eYYGiGsr8ZFcpX50ng3WGT00w0OQ,72970
 toil/test/src/helloWorldTest.py,sha256=vPxXEYDZZuMynm_yQ5ZZPcm3AzXdYLT9bs0kP72OM2w,1727
 toil/test/src/importExportFileTest.py,sha256=jqQQzQta0BH6QtxidFs8s-snpLIAS6P5y89oAU_gXAA,7974
 toil/test/src/jobDescriptionTest.py,sha256=ops9NpnUa1aKGPrTOXU3jTwiDszCRJzHHAZzQx8bF10,4335
@@ -298,10 +308,11 @@ toil/test/src/userDefinedJobArgTypeTest.py,sha256=5PaS_418DbCAk7csGmgx3VC90mB-9Y
 toil/test/src/workerTest.py,sha256=88Mz9ES62IijTkLdnzCxB3ZVEtLS2fxbIVlfhjI4SwI,6334
 toil/test/utils/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
 toil/test/utils/toilDebugTest.py,sha256=Qp3_MaTyhjQOs4WkI2J7BwRSdx-MyjjcghTnPZ-EWKA,9757
-toil/test/utils/toilKillTest.py,sha256=fuigiHip4tR4HkYiqSojkiagMGUajRFprGS2LPAOMHk,3747
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 toil/test/utils/utilsTest.py,sha256=RuiYS5ogRz_rid2YqsRGhylpW3oGofe8ssGvUbXSBiE,22008
+toil/test/utils/ABCWorkflowDebug/ABC.txt,sha256=tdQEXD9Gb6kf4sxqvnkjKhpXzfEE96JucW4KHieJ33g,3
 toil/test/utils/ABCWorkflowDebug/B_file.txt,sha256=wM3nf6j--X1HbBCq09LVT8wvM2FA0HNlHC3Mzx43n9Y,2
-toil/test/utils/ABCWorkflowDebug/debugWorkflow.py,sha256=BdzJE1TFGnBmO7aO8sGG4Noe2CpM0rad8te9_wvAKlI,6812
+toil/test/utils/ABCWorkflowDebug/debugWorkflow.py,sha256=QF8tfoEVYdZbR7vyL43El4G_Q613zdGo_xF_m_zi7sk,6785
 toil/test/utils/ABCWorkflowDebug/mkFile.py,sha256=x0DSfKGpd-39F1X1lXHzY_CpGvFvsMFDneOJRRimDXE,454
 toil/test/utils/ABCWorkflowDebug/sleep.cwl,sha256=JWQ77oYNXXRGUdnHVORkqh0SvSXlIBWM9JHmhJOpIv8,183
 toil/test/utils/ABCWorkflowDebug/sleep.yaml,sha256=9kNrGjaLOSTdsnC7zw36Em2YLueoHFdraKBLiQY3WEQ,13
@@ -309,13 +320,13 @@ toil/test/wdl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/wdl/lint_error.wdl,sha256=vLwgk8CrPzLNRJnMLuQV22m1E1cwG-m76ZM0XgSKfLY,86
 toil/test/wdl/test.csv,sha256=1hPDzKegqv1H582Bx-4CaFBLE-jCSyZo3N6KhjhsXO8,18
 toil/test/wdl/test.tsv,sha256=O4F7lQouDB33aMklmbL2KOoLNNEDx_EUiHmANZ4pKeg,18
-toil/test/wdl/wdltoil_test.py,sha256=9xcJEWMWSJDU3hJBfWfbavt8CuesvP0Ot2Z8utWAQsI,50532
-toil/test/wdl/wdltoil_test_kubernetes.py,sha256=MJs8w6LXISSCM3fXfBw6kCUtvNb_jM0yTsbenSWXf0s,2839
+toil/test/wdl/wdltoil_test.py,sha256=FyVZHRIp7qoSpospQUB4rt08mGcctI_l2OJY3KUnV1I,50554
+toil/test/wdl/wdltoil_test_kubernetes.py,sha256=vJdmSuQJslvrfF6nadjORkdanED99xElG54EC7L2rR4,2996
 toil/test/wdl/md5sum/empty_file.json,sha256=Y4Yb2dygeV8J7wowyUuTi8qOwmRR-znb70r3jsPw688,27
-toil/test/wdl/md5sum/md5sum-gs.json,sha256=0Y6b0YN-v4Kt8nTGkNIiKfB2C53Rsio5Hij1Oy6wogE,79
+toil/test/wdl/md5sum/md5sum-gs.json,sha256=PppK5H77nRcpo_n2ttZzEPkoxrLVypGlFD6Wrwe-hfk,123
 toil/test/wdl/md5sum/md5sum.1.0.wdl,sha256=BJMdlruHIRcuBLQY738T_eyHZms-8obz4-P6VxrwW30,445
 toil/test/wdl/md5sum/md5sum.input,sha256=Dku-ociuYkwF79yyEiesBDbi97E3AVJwfLhogDnlE-E,67
-toil/test/wdl/md5sum/md5sum.json,sha256=s1uy1XWxlVmPs6twrFiNGCWUEk_ZcohNLkyAfyNOklE,64
+toil/test/wdl/md5sum/md5sum.json,sha256=Qact-pZ-Bqy2016DharLO3vFhok_RiWEKtTWSn0V6oQ,39
 toil/test/wdl/md5sum/md5sum.wdl,sha256=rOMK3chqHY8TvJljL715ZDGokmN3z-eUtIzDXTFYw5w,447
 toil/test/wdl/miniwdl_self_test/inputs-namespaced.json,sha256=uUaurpDKWYaPET2tEkiIZ1ciEti_4s2_j0ZsUwiDdPo,107
 toil/test/wdl/miniwdl_self_test/inputs.json,sha256=Q_e331sBPLgqfALukm1eWxR1n5zQp2l5YRtiGpWjBW4,94
@@ -394,6 +405,7 @@ toil/test/wdl/testfiles/drop_files_subworkflow.wdl,sha256=Qrq7LPfQGmD8ALWUVyp3Al
 toil/test/wdl/testfiles/empty.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/test/wdl/testfiles/not_enough_outputs.wdl,sha256=AO3v20B5nR28MZmmKYCTiqh3hRJgg6LCENAZ2nC4IYg,438
 toil/test/wdl/testfiles/random.wdl,sha256=74vORE5a-fcQs_z73uyjUzkRqpGLv22bWmlNuvE83nw,1017
+toil/test/wdl/testfiles/read_file.wdl,sha256=9UkeiNK7QQJfzARfWfApL_zQ_7O3cTAF3_IyJfBhQJs,296
 toil/test/wdl/testfiles/string_file_coercion.json,sha256=nu3kh6p0_jgKz2Mcw7NjvM10sBfF9BE627SLvThvff0,45
 toil/test/wdl/testfiles/string_file_coercion.wdl,sha256=jAtxOuPkoZLvVDIJhrOqKFuX-0_79Fwz2W9UlF9voLs,687
 toil/test/wdl/testfiles/test.json,sha256=XdtB9ajGigQBbXEPHSGcB6PVpWiN2rnr0gH9uc6mpXU,43
@@ -404,7 +416,7 @@ toil/test/wdl/testfiles/test_lines.txt,sha256=T8YhSilj6qZUlOMAiJP12Cg3khvJjtheRu
 toil/test/wdl/testfiles/test_map.txt,sha256=QyN7s49sriiQAf9yiaOAaL6bX8RD33-cAt6Kb204lZU,24
 toil/test/wdl/testfiles/test_string.txt,sha256=RJIcNvAtpktKTMLRM0lPdz9HOrjMpcS911oJGLeciQI,19
 toil/test/wdl/testfiles/url_to_file.wdl,sha256=Qn3FsMMkdz3ZOY41J2x2okkyHap0WC7G1Aw4TEx7o4U,255
-toil/test/wdl/testfiles/url_to_optional_file.wdl,sha256=ycNVeUX6A3_bxID7pEdF4irBCgSix2KogDmvJ9dQMZY,208
+toil/test/wdl/testfiles/url_to_optional_file.wdl,sha256=70lDMV3_DdqkULMsglviII4vS627je7nvCS6R5d0iTw,243
 toil/test/wdl/testfiles/vocab.json,sha256=yj0WO6sFU4GCciYUBWjzvvfqrBh869doeOC2Pp5EI1Y,3
 toil/test/wdl/testfiles/vocab.wdl,sha256=CHKWCFX9ZxuYRnR9SLS5_T9pqei3LSo5bChSxLg9xNI,1995
 toil/test/wdl/testfiles/wait.wdl,sha256=Nua3sRf-ciA6eVUzZG2nopYNgrrA3-4MNyKV395MvxQ,402
@@ -416,7 +428,7 @@ toil/test/wdl/wdl_specification/v1_spec_declaration.wdl,sha256=-9YcGU3YotQP3vn4-
 toil/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 toil/utils/toilClean.py,sha256=X6Fws6LVqa-ScUITMTomV5iohXa3yz_rAIFnUfXlqZU,1850
 toil/utils/toilConfig.py,sha256=Ki6gGV-9d21z06u-A0meE2H0MjJUCT4mQEsMmERHn8o,1502
-toil/utils/toilDebugFile.py,sha256=HdBOe6IX6xyzGjDf_ZDxCTWaeA9lFO94UexGV1oeptE,6302
+toil/utils/toilDebugFile.py,sha256=tRlsJgfCnPCV-1w4eS9WPIBDlywIxLgxzAXeQjjqhhk,6334
 toil/utils/toilDebugJob.py,sha256=K3j5wqDBzLHRGwThE_PDVN0-yKFl7xETDWXrNe6EnQc,10796
 toil/utils/toilDestroyCluster.py,sha256=OvwlKgomHiLptN8GjLouBzfFCo-SyLfrRWF4sv0kPww,1416
 toil/utils/toilKill.py,sha256=21zOstvFb32cwQlhMsG5Q4lPT2CSnZ7OXEK1mmyLmtk,2751
@@ -424,16 +436,16 @@ toil/utils/toilLaunchCluster.py,sha256=nKoqmbAnadoZNKx7plzyZzAgMj6yn38tu2LOQqjLN
 toil/utils/toilMain.py,sha256=Lz7dtkpE8urTRgimRjewKvbh4Xgh6l0OJRtxX203LyI,2790
 toil/utils/toilRsyncCluster.py,sha256=cR-4o9KpoyBdObCwQgpAqpO30VK3gGzwHKOGyQHGQeQ,2150
 toil/utils/toilServer.py,sha256=4XbyOHQHgMWWrCWj9Uz1M-jLQheV2Ju-DQ_fNdnBg1o,1178
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-toil/utils/toilStats.py,sha256=I8ERYFA0NxYDC8meBoMkxABmVfTlvYWnOBRP8BfVGEc,25615
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 toil/utils/toilStatus.py,sha256=qacxW5lcguvmhUi1b4cjm1acJik0zpsP7CsUuZyX-fo,20424
-toil/utils/toilUpdateEC2Instances.py,sha256=dreH9Vc2qUoc0he5AwqiFmqdOQp3tMmIfkjWm7GS5qE,1295
+toil/utils/toilUpdateEC2Instances.py,sha256=47972f1_oRvKOZv77EcBr3QjP2YNl8SZWhTsw6mWG-4,1318
 toil/wdl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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{toil-8.2.0.dist-info → toil-9.1.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.1.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any