toil 7.0.0__py3-none-any.whl → 8.0.0__py3-none-any.whl

toil-8.0.0.dist-info/METADATA

@@ -0,0 +1,173 @@
+Metadata-Version: 2.2
+Name: toil
+Version: 8.0.0
+Summary: Pipeline management software for clusters.
+Home-page: https://github.com/DataBiosphere/toil
+Author: Benedict Paten and the Toil community
+Author-email: toil-community@googlegroups.com
+License: Apache License v2.0
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Healthcare Industry
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Natural Language :: English
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Astronomy
+Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Classifier: Topic :: System :: Distributed Computing
+Classifier: Topic :: Utilities
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+Requires-Dist: dill<0.4,>=0.3.2
+Requires-Dist: requests<=2.31.0
+Requires-Dist: docker<8,>=6.1.0
+Requires-Dist: urllib3<3,>=1.26.0
+Requires-Dist: python-dateutil
+Requires-Dist: psutil<7,>=6.1.0
+Requires-Dist: PyPubSub<5,>=4.0.3
+Requires-Dist: addict<2.5,>=2.2.1
+Requires-Dist: backports.zoneinfo[tzdata]; python_version < "3.9"
+Requires-Dist: enlighten<2,>=1.5.2
+Requires-Dist: configargparse<2,>=1.7
+Requires-Dist: ruamel.yaml>=0.15
+Requires-Dist: pyyaml<7,>=6
+Requires-Dist: typing-extensions<5,>=4.6.2
+Requires-Dist: coloredlogs<16,>=15
+Provides-Extra: aws
+Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts]<2,>=1.28.3.post2; extra == "aws"
+Requires-Dist: mypy-boto3-iam<2,>=1.28.3.post2; extra == "aws"
+Requires-Dist: mypy-boto3-s3<2,>=1.28.3.post2; extra == "aws"
+Requires-Dist: moto<6,>=5.0.3; extra == "aws"
+Requires-Dist: ec2_metadata<3; extra == "aws"
+Provides-Extra: cwl
+Requires-Dist: cwltool==3.1.20250110105449; extra == "cwl"
+Requires-Dist: schema-salad<9,>=8.4.20230128170514; extra == "cwl"
+Requires-Dist: galaxy-tool-util<25; extra == "cwl"
+Requires-Dist: galaxy-util<25; extra == "cwl"
+Requires-Dist: ruamel.yaml<=0.19,>=0.15; extra == "cwl"
+Requires-Dist: ruamel.yaml.clib>=0.2.6; extra == "cwl"
+Requires-Dist: networkx!=2.8.1,<4; extra == "cwl"
+Requires-Dist: CacheControl[filecache]; extra == "cwl"
+Requires-Dist: cwl-utils>=0.36; extra == "cwl"
+Provides-Extra: encryption
+Requires-Dist: pynacl<2,>=1.4.0; extra == "encryption"
+Provides-Extra: google
+Requires-Dist: apache-libcloud<3,>=2.2.1; extra == "google"
+Requires-Dist: google-cloud-storage<=2.8.0,>=2; extra == "google"
+Requires-Dist: google-auth<3,>=2.18.1; extra == "google"
+Provides-Extra: kubernetes
+Requires-Dist: kubernetes<33,>=12.0.1; extra == "kubernetes"
+Requires-Dist: kubernetes-stubs==v22.6.0post1; extra == "kubernetes"
+Requires-Dist: types-urllib3; extra == "kubernetes"
+Requires-Dist: types-PyYAML; extra == "kubernetes"
+Requires-Dist: idna>=2; extra == "kubernetes"
+Provides-Extra: wdl
+Requires-Dist: miniwdl==1.12.1; extra == "wdl"
+Requires-Dist: wdlparse==0.1.0; extra == "wdl"
+Requires-Dist: graphlib-backport==1.0; python_version < "3.9" and extra == "wdl"
+Provides-Extra: server
+Requires-Dist: connexion[swagger-ui]<4,>=2.10.0; extra == "server"
+Requires-Dist: flask<4,>=2.0; extra == "server"
+Requires-Dist: werkzeug<4,>=2.0; extra == "server"
+Requires-Dist: flask-cors==5.0.0; extra == "server"
+Requires-Dist: gunicorn==23.0.0; extra == "server"
+Requires-Dist: celery<6,>=5.1.0; extra == "server"
+Requires-Dist: wes-service<5,>=4.0.0; extra == "server"
+Requires-Dist: ruamel.yaml<0.19,>=0.15; extra == "server"
+Provides-Extra: htcondor
+Requires-Dist: htcondor<25,>=23.6.0; sys_platform != "darwin" and extra == "htcondor"
+Provides-Extra: mesos
+Requires-Dist: pymesos<0.4,>=0.3.15; python_version < "3.11" and extra == "mesos"
+Provides-Extra: all
+Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts]<2,>=1.28.3.post2; extra == "all"
+Requires-Dist: mypy-boto3-iam<2,>=1.28.3.post2; extra == "all"
+Requires-Dist: mypy-boto3-s3<2,>=1.28.3.post2; extra == "all"
+Requires-Dist: moto<6,>=5.0.3; extra == "all"
+Requires-Dist: ec2_metadata<3; extra == "all"
+Requires-Dist: cwltool==3.1.20250110105449; extra == "all"
+Requires-Dist: schema-salad<9,>=8.4.20230128170514; extra == "all"
+Requires-Dist: galaxy-tool-util<25; extra == "all"
+Requires-Dist: galaxy-util<25; extra == "all"
+Requires-Dist: ruamel.yaml<=0.19,>=0.15; extra == "all"
+Requires-Dist: ruamel.yaml.clib>=0.2.6; extra == "all"
+Requires-Dist: networkx!=2.8.1,<4; extra == "all"
+Requires-Dist: CacheControl[filecache]; extra == "all"
+Requires-Dist: cwl-utils>=0.36; extra == "all"
+Requires-Dist: pynacl<2,>=1.4.0; extra == "all"
+Requires-Dist: apache-libcloud<3,>=2.2.1; extra == "all"
+Requires-Dist: google-cloud-storage<=2.8.0,>=2; extra == "all"
+Requires-Dist: google-auth<3,>=2.18.1; extra == "all"
+Requires-Dist: kubernetes<33,>=12.0.1; extra == "all"
+Requires-Dist: kubernetes-stubs==v22.6.0post1; extra == "all"
+Requires-Dist: types-urllib3; extra == "all"
+Requires-Dist: types-PyYAML; extra == "all"
+Requires-Dist: idna>=2; extra == "all"
+Requires-Dist: miniwdl==1.12.1; extra == "all"
+Requires-Dist: wdlparse==0.1.0; extra == "all"
+Requires-Dist: graphlib-backport==1.0; python_version < "3.9" and extra == "all"
+Requires-Dist: connexion[swagger-ui]<4,>=2.10.0; extra == "all"
+Requires-Dist: flask<4,>=2.0; extra == "all"
+Requires-Dist: werkzeug<4,>=2.0; extra == "all"
+Requires-Dist: flask-cors==5.0.0; extra == "all"
+Requires-Dist: gunicorn==23.0.0; extra == "all"
+Requires-Dist: celery<6,>=5.1.0; extra == "all"
+Requires-Dist: wes-service<5,>=4.0.0; extra == "all"
+Requires-Dist: ruamel.yaml<0.19,>=0.15; extra == "all"
+Requires-Dist: pymesos<0.4,>=0.3.15; python_version < "3.11" and extra == "all"
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: provides-extra
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+.. image:: https://badges.gitter.im/bd2k-genomics-toil/Lobby.svg
+   :alt: Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby
+   :target: https://gitter.im/bd2k-genomics-toil/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
+
+Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system,
+written entirely in Python, and designed around the principles of functional
+programming. It supports running workflows written in either Common Workflow Language (`CWL`_) 1.0-1.2 or 
+Workflow Description Language (`WDL`_) 1.0-1.1, as well as having its own rich Python API for writing workflows against. 
+It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud. 
+
+* Check the `website`_ for a description of Toil and its features.
+* Full documentation for the latest stable release can be found at
+  `Read the Docs`_.
+* Please subscribe to low-volume `announce`_ mailing list so we keep you informed
+* Google Groups discussion `forum`_
+* See our occasional `blog`_ for tutorials. 
+* Use `biostars`_ channel for discussion.
+
+.. _website: http://toil.ucsc-cgl.org/
+.. _Read the Docs: https://toil.readthedocs.io/en/latest
+.. _announce: https://groups.google.com/forum/#!forum/toil-announce
+.. _forum: https://groups.google.com/forum/#!forum/toil-community
+.. _blog: https://toilpipelines.wordpress.com/
+.. _biostars: https://www.biostars.org/t/toil/
+.. _CWL: https://www.commonwl.org/
+.. _WDL: https://openwdl.org/
+
+Notes:
+
+* Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
+* Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).

toil-8.0.0.dist-info/RECORD

@@ -0,0 +1,253 @@
+toil/__init__.py,sha256=v0u19Zmd-JKCWBr2jn8Eal4oXMOm-sY5MSSnqUIhfH8,19300
+toil/bus.py,sha256=Hi2TTCVGX4WTw67BOKo7l9yZw9Ln_zcobJzQxrfge4M,29938
+toil/common.py,sha256=EwIN1Ith42OJsSknXwVk7tZ3SFyuHne13_jPZUxP6WE,75521
+toil/deferred.py,sha256=2ShsuPqDwu0jhBQ6ocMwe4lfNegBm2lj7dOG9E7X3Zc,14152
+toil/exceptions.py,sha256=oL2d9uutwtcPkMcEUGrixKUd4y1JLSA0-N7hNJqCLSk,1883
+toil/job.py,sha256=Bpj5bi5NPzkUMrG4mbEbkFHHWheqZwZbGRHAtKFZPWw,173199
+toil/leader.py,sha256=ubIdkEUb3hmGAc7oCWnKuvxOAlyyvOgVyDCN4i6DJAw,85101
+toil/realtimeLogger.py,sha256=2O4AUaKtvItzzCAQKORIEHZ2cDoLf_6njoKWv_uzdFc,9878
+toil/resource.py,sha256=PlI6R28aYqfYLDsztjlAYpkVGfSr2O0DhrgDXpXJxa0,25650
+toil/serviceManager.py,sha256=GE5IUjQmNrekYv9tclim0RlCFf4ueOQ2H4qHjMBrOcg,19978
+toil/statsAndLogging.py,sha256=Nq4bwpieQVmJNpj6vuN8zdM_yVRA2pKpcJGcxOn7SWI,17152
+toil/toilState.py,sha256=DD52XQv8wRCYzF7-F6Olqa_k6u-_py-JWyjqJHRh6Z0,17989
+toil/version.py,sha256=0ff-z3yLFu7Q8r18rieIWcRnUVqARJPAA8YN_omkeTc,488
+toil/worker.py,sha256=-V5aL9-5fq2muPZKGKix_D81R5bJrRjQ4fuHzyEq9WM,35998
+toil/batchSystems/__init__.py,sha256=T8psI5GmvE71_XmajKsfeQ3YUs6XM7rX1Fy9VNUX_-Q,1036
+toil/batchSystems/abstractBatchSystem.py,sha256=h8mbA_k_7EZqOrbcdQmKHDcAy6D2ZB77XXS3Wu4-E90,33542
+toil/batchSystems/abstractGridEngineBatchSystem.py,sha256=yR3nlCvJRcxYEDRyA3qYuNjvgmVDfzvW4bx9RY14TLg,24336
+toil/batchSystems/awsBatch.py,sha256=vpV6CxUBi0sj5b91cWKi7Gonk276Nfz0_-QLZVoahNQ,27298
+toil/batchSystems/cleanup_support.py,sha256=mpExAW-Tw2ZnGMgJEt06zZGjNLhXHPLVuDEraM9N8r4,4054
+toil/batchSystems/contained_executor.py,sha256=2wP3sDyOanB2YrXxhdJ1PI3VohKK37ifgRya2F0rcMY,5111
+toil/batchSystems/gridengine.py,sha256=OL1SOQXV5vz7UwNSSZ2lKTRArkeaVRND5FyqQ8K8V20,8114
+toil/batchSystems/htcondor.py,sha256=nCylLUvRyX2k79LYriJgwhmowJBRekBWYUSpJgtawsY,18613
+toil/batchSystems/kubernetes.py,sha256=5bC_ipdfgIzl2_I1SxqrcRHPjbcicBNznNK2c3u0gnY,86959
+toil/batchSystems/local_support.py,sha256=R-DT_G5jcQXjZyDQ9OdFj0KUeULMSmcLBen3p-tSGdw,3893
+toil/batchSystems/lsf.py,sha256=rQJe6dpnqs-LAZ0qaAo94VtxvhADwv8XzRTrQulp-mQ,18089
+toil/batchSystems/lsfHelper.py,sha256=IE5y-x-Mofau7jksWjBdTLt5dVvyj-w8dd3gqwZ-r8o,7227
+toil/batchSystems/options.py,sha256=qA6cIFIviI-5ogKwUaTHQkmVnJ7qzsNts8kI3xc49XU,8110
+toil/batchSystems/registry.py,sha256=eizqlhn4AdBzykdOFu_S5ZcU4eYpMB_vDTb8ml6W3Kw,6701
+toil/batchSystems/singleMachine.py,sha256=5qj9gr0bcT8RciNYM_eC-aHORdDSbdM4SGlam1SGlGw,40348
+toil/batchSystems/slurm.py,sha256=oaP_4axl2YBAWFSoK7khAwPCaTVihJTxtP2VRZQ-vn4,37000
+toil/batchSystems/torque.py,sha256=A3Pe1IvIltpJSoVulfEUrilr-Ok_8E9hf41jbHYYzjQ,11795
+toil/batchSystems/mesos/__init__.py,sha256=jkeRf24eXeOTdRibDzJtqKwXup47FseQS0UXKriKrxg,3554
+toil/batchSystems/mesos/batchSystem.py,sha256=-3COwXjaibZClIHfAgj98SVy2R2yK8UUCjWaOj-R0hM,40194
+toil/batchSystems/mesos/conftest.py,sha256=n1ZIXzZP0msJlZL_ZIG84trKifxFLRLr2uIr-EjDucQ,836
+toil/batchSystems/mesos/executor.py,sha256=ETsWkx0JaERw7YS5rzv23_xj492hKSxDOsanVilwy7Q,12729
+toil/batchSystems/mesos/test/__init__.py,sha256=qa4iDR9yGhZyViSvTyPH5wi6qIlKpKcC5-bj3uvB4PY,4718
+toil/cwl/__init__.py,sha256=lfyX1eoJ1IA26AUzUl6-ODTi0ZqD_0F6-rL5eqfl_9E,2131
+toil/cwl/conftest.py,sha256=R6Jw5-PeTCK0rapfHmV_VJwVcqlVbO5w3cFUbaIWUnk,848
+toil/cwl/cwltoil.py,sha256=aHc1lqQd9sPaJshg4A--qtkH9pyBAB8XpQfRH14vkU0,181589
+toil/cwl/utils.py,sha256=CV69GfCEJ1uvAlbDPJKq42Ed19vBE2E5F7v5MZJK7Gw,8023
+toil/fileStores/__init__.py,sha256=xbcTdb31JXsLPxBbL3P5lm8XZlHNBohHPyawXNnZLOs,2388
+toil/fileStores/abstractFileStore.py,sha256=g_gViwfPqYOjGOTQCXrHOulQanump6P0SPirvX6ZqWQ,30851
+toil/fileStores/cachingFileStore.py,sha256=g5e4sV3XYkvpv6ZjbEuRc9KreX57RJtr4vOvxV_B4rw,101746
+toil/fileStores/nonCachingFileStore.py,sha256=VsPoKz0Ln5HP-trLlAarqhqJIzdwpADfu8E_UJH4X9w,15806
+toil/jobStores/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/jobStores/abstractJobStore.py,sha256=igIKcOQKOsgVqHQTD9PvWqFgjkBDttdbPM1LP-Gzsl0,78640
+toil/jobStores/conftest.py,sha256=xNy_u3dGZz0206dnixzYvAvT85a0HfkIJw9XbsiGJnM,837
+toil/jobStores/fileJobStore.py,sha256=r8rymME47BTjGW5a_kb1QDTWF4MDGNrrXtAc8qwpfIk,52035
+toil/jobStores/googleJobStore.py,sha256=xcBWTsM35MyfzYwGZJmqBXOTFMBFHTUFDO0tqc5ALgY,24414
+toil/jobStores/utils.py,sha256=R1NKkyHC9txT7KMXAoa51aNOJJOHx7HloPqI7PD6ipA,15521
+toil/jobStores/aws/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/jobStores/aws/jobStore.py,sha256=jJkYnNESOJbGYZ-eydFQjKSxWAe3p9dkXx8r0NQSTPg,88359
+toil/jobStores/aws/utils.py,sha256=GDSNhcwgkhyrq1YDdYJscg1gjFyGpGxIARUYH3cMvPw,20584
+toil/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/lib/accelerators.py,sha256=HgDO5rgz-9tU_-fLfScABliMH3VdYSVt-juKfQsUenQ,7937
+toil/lib/bioio.py,sha256=lB9fuyOjWtNZfQCc4x2WzGK3x3xDaq6kW8Ghj1wOchc,2384
+toil/lib/compatibility.py,sha256=pPPTJyk3GUZ8SdAv14a3v2HLWbNtcnsAFuCEbh36UZ4,1535
+toil/lib/conversions.py,sha256=CuOHhxpS8RFdp9U-oLSWmhSNLMKT7lqG5N5uhvxfCK4,5135
+toil/lib/docker.py,sha256=IUWvImtzdaPrCqhzVmTrknXXpgPef23DLUsslZ7KInE,20036
+toil/lib/ec2.py,sha256=gceJSDOlhiD0jtKs0e7rS8ploctt-fhJHzrYHr1_lcw,25570
+toil/lib/ec2nodes.py,sha256=uydhQaTlr_ISjb658MWocL5CRhbzJb6T-OqqylkC-Q0,14668
+toil/lib/exceptions.py,sha256=lj9oMa1B10TDeJ-7-xgL48Qrx6PExNrLUE2ZCdWQ2BQ,2946
+toil/lib/expando.py,sha256=JN8dbYk5K48Dwmvb_3bCkO6NYbb89iL0CRchg3_FyFA,2924
+toil/lib/ftp_utils.py,sha256=VqrstWP6dKJnTHtrxGPp7dzeDpyaD4IR4I5NKrPR3g0,7598
+toil/lib/generatedEC2Lists.py,sha256=pcdygnoZLokhhihbzm3YMNtXsNZSsvrhjYFA784qeag,274723
+toil/lib/humanize.py,sha256=6uXOB07rvAxO8jpIh2kPwy9bfoDu0eEUmBGz9m1chS8,1267
+toil/lib/integration.py,sha256=vCFKjV-2K3T1LCZMqdgfCWDF4FAenGqTSflG_reg4vk,16163
+toil/lib/io.py,sha256=NX3bm7YGsxb6p76sVnRigweFZf12pfA-oXUs23l023U,12328
+toil/lib/iterables.py,sha256=gLbbxBzB0f-hhMRcCN9P-TDqNYK0myUKVCYBa9eJo-c,3459
+toil/lib/memoize.py,sha256=2ikkIOXfZv7LGsoEn8i2ojYTqqNmIIBhSCfBQxySIKg,3225
+toil/lib/misc.py,sha256=jCSSftkKiam_MrH9jAZKMMTBEH9CjTBiUUF8zernll0,6657
+toil/lib/objects.py,sha256=3XNMtBkNcIB2EMl5cteVDkuSRKAOpnd_GhxgTGVh43M,5381
+toil/lib/resources.py,sha256=KkfM3hSUwTT__Avh8jPxM0VlrXvqajGjnXScMSlqT7Y,4005
+toil/lib/retry.py,sha256=JFGxvx4BK981hqo4MvKoBX1KvJIVNxQafKEYx9MVEDE,22927
+toil/lib/threading.py,sha256=cdhEqrScvdtCELE0RUukXdV1nlyAlu-ya7DyVSbskrI,30921
+toil/lib/throttle.py,sha256=ua21juOmGI7JZP4pXdR8-s2TpF6PpwW3sg11a2gcrbI,4955
+toil/lib/aws/__init__.py,sha256=VI77J2o4IehFBpEUjS4eHmXlxEplFnKYHq6w8ZyotEk,7905
+toil/lib/aws/ami.py,sha256=SD728qocULXqWZmxPslcymukG-MxfNniMsBE9d1VVcM,9341
+toil/lib/aws/iam.py,sha256=6qNJ6C61XVzbuPX1p-tcnEcabCjIultrVe9MrgcME04,18550
+toil/lib/aws/s3.py,sha256=accn7bSneZttfb91pZR_80gDhCgVX7Z4ZOKOwM-6u9w,1156
+toil/lib/aws/session.py,sha256=xWtzP52v_Wf0hYTVnoIf0FrL-isXIgzZrwRPeW8ajnI,14543
+toil/lib/aws/utils.py,sha256=CFgg4g3f6I8kIyg8_JB18xzR5yk-WHZXk7cq_NXb_aU,19738
+toil/lib/encryption/__init__.py,sha256=HP19EUYJeIMdjZq11fLn_dXIGU98sIkpTxvMxvPaUSs,705
+toil/lib/encryption/_dummy.py,sha256=6e2fthd6YdgFUgY0kjGb2052KLWUeXD_ejeoCTAThLU,1082
+toil/lib/encryption/_nacl.py,sha256=_EL8LrF5T5DT0dhNIlyIxDB8c8irGe9nJVh1Sn7mFkA,3747
+toil/lib/encryption/conftest.py,sha256=jCrRo2AtsGaO6hitm-wkNOTAU78JWSVA52E0hZdMpq8,227
+toil/options/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/options/common.py,sha256=fNAOlnsLD_2on6gWHV8nTVikzlx_nrhaco6hLLlRbHo,45075
+toil/options/cwl.py,sha256=r2eMuOxbJaq8_mc25KLzzEjAvvWJqe2QfLHcXKidurg,13600
+toil/options/runner.py,sha256=7DxJLvcMm6CLwTZnPW1f9UmQKx1vw5Sq8VaqJDLzC7g,2388
+toil/options/wdl.py,sha256=PJ5qile1zus-Jwld8Sb3KmG8zzIIuYVJMj-8jmaRB6U,3167
+toil/provisioners/__init__.py,sha256=Z3OV95yx77LBVRUtjX_J8r_0OSC2glAIo5y7irbB-S0,9794
+toil/provisioners/abstractProvisioner.py,sha256=R3OuUV2p8GWWuRs2PbaHkjHufOLyoknUaHq4vKPVGMc,58000
+toil/provisioners/clusterScaler.py,sha256=9FgnSPbn2U_FYUSJUeN67A0kdh-Yl0roi5nZLeJVr_I,64980
+toil/provisioners/gceProvisioner.py,sha256=I0g5oNwsRAr3D-gimCIhk6xZZ-HB_Y3jzgOhMRGx86k,24182
+toil/provisioners/node.py,sha256=RFLXufNQhjiHUO5fBfbEBd4cbtSUWsNmiGcDDodioMI,15198
+toil/provisioners/aws/__init__.py,sha256=XmVkSuHGMvaMbDJ36yZHGkH5fsUJYJyi3V4R9MYw0Gs,8621
+toil/provisioners/aws/awsProvisioner.py,sha256=Fd2twLvxKeDKfPw-HoxOdgtJqLajwVVJ1VqhDqt-D0I,89097
+toil/server/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/server/app.py,sha256=Xi8ZYs0qKsg1ISNETiYjMtt_qxrou3NuHZcx9bu3MNU,7048
+toil/server/celery_app.py,sha256=PbdwRb7tY5MU4PkPgFZkq7CMiCe6LHBxw5YgcbdsKIE,663
+toil/server/utils.py,sha256=hSeRcdBMBkvS3iGRtF3jB5lVNcsTXJGS-7fV8czuJ4E,21919
+toil/server/wsgi_app.py,sha256=3V3xr80F4uJUzeBbTbPI1uKJ3FUcI-H_8T1eiiEM5iw,1959
+toil/server/api_spec/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/server/api_spec/workflow_execution_service.swagger.yaml,sha256=zZ2QepvbpvLROIcVIHWrcQLUwXEqGfm68fmkdrx8rw8,25377
+toil/server/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/server/cli/wes_cwl_runner.py,sha256=vw3KKnoe_oof6PLxiJWenHev53YwVmpzc8N9FwZMoKk,18501
+toil/server/wes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/server/wes/abstract_backend.py,sha256=d8IA2Fepwr9g6BU-CO3VBvODiPswsps9rPcOKUUvD8k,10202
+toil/server/wes/amazon_wes_utils.py,sha256=xRrV7hiWoWVwxJykgL2HQdMf1FZg73eqEBltKXya1Fc,10287
+toil/server/wes/tasks.py,sha256=DBjUUbxY6mq0H4aB8qiGhatmz6qWJWHkHPgfAqSr37w,24746
+toil/server/wes/toil_backend.py,sha256=GaBhjr2evNwV07QiAiQf6GgDRGxiX1SblkLTEa7-WFo,27499
+toil/test/__init__.py,sha256=HQBKUyJCEM1_kMz-aVsCKjOBZ0bT029gUlElfrE2sAE,45148
+toil/test/batchSystems/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/batchSystems/batchSystemTest.py,sha256=hMp5mmtGdWxnb4DIjCxy4m-BU9BeJ6n3w_-QF9ziYcg,55546
+toil/test/batchSystems/batch_system_plugin_test.py,sha256=KUVDjbXgxopEqTC4pAAwUePc-QrThxhChyaernYVpVM,2802
+toil/test/batchSystems/test_gridengine.py,sha256=kZCF7WIAmCF1LTPPWd4zC6piQr0UaKJ3kYKz5tsBal0,6353
+toil/test/batchSystems/test_lsf_helper.py,sha256=JICnAPvU7HfqJ0RhIpC-IFfHLKftOAAQF2Iqc7nFs30,4697
+toil/test/batchSystems/test_slurm.py,sha256=bCwVanzQf17c9IY9-bSiDAje1lHyCt2PUWUJZy9GKV4,19529
+toil/test/cactus/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/cactus/test_cactus_integration.py,sha256=4sRlsm7b29a08HNHFUbFu_gDW36TQeTfGBvRYUXNF_U,2219
+toil/test/cwl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/cwl/alwaysfails.cwl,sha256=EWDfzxMG4WqH2YQErhIHYPVc7-1eyucEUboj8r7yVbA,210
+toil/test/cwl/colon_test_output.cwl,sha256=8evFOnHvpJEPn1lBI2zuEKueMUbh2p8oSNOKl-M4Ojw,401
+toil/test/cwl/colon_test_output_job.yaml,sha256=BbXFRuWsRJV6JpJAutnHywJl_AbwEcwNRszArfRecxs,72
+toil/test/cwl/conditional_wf.cwl,sha256=SAtUSmD5ta-DVG0SRHpT8EtOp8ztm-6v9Vskcl09c3s,357
+toil/test/cwl/conditional_wf.yaml,sha256=WsS9dlpbRUll9M56KspQdOJ8h6SASTW7eRELefa274E,24
+toil/test/cwl/conftest.py,sha256=okwzv8y-qDSIz--eauonzQXxj6DxyT-u8sXIUMmjxlE,698
+toil/test/cwl/cwlTest.py,sha256=t98io1NVD1LSwXRT8jzaLH97noUq5Hf2XDJQ34NZ6fc,63465
+toil/test/cwl/directory_from_directory.cwl,sha256=-hjZuUs5fMpKMnbj-FZAgcns4iWsCFJV6Qh7-fsRn1I,556
+toil/test/cwl/download.cwl,sha256=XQvz8or_-k6pwyhgeUeJOew0_b3BeHcF08EaalbySz4,296
+toil/test/cwl/download_directory.cwl,sha256=RdPmElFeHJqXGWVqEqR5VFMmXDiJubhTcM9hIrAhKY4,535
+toil/test/cwl/download_subdirectory.cwl,sha256=9xhggsaDvdA0fOUGOXWt853h1ir0KCKB4NhhAnYLKZ4,784
+toil/test/cwl/echo-stderr.cwl,sha256=M-j3robw02M6PWkhbDI3Yn1GDGRDteLGMMFvfhL56mQ,342
+toil/test/cwl/echo-stdout-log-dir.cwl,sha256=emXc_pJKCUI7zpN4c6WMeIRvAsvmibRA1vyHhQB3y4Y,228
+toil/test/cwl/echo.cwl,sha256=1_Pvhg7RmQq3wpYUhQT6iS0IR7MN_CY8UEdBWjWcQf4,183
+toil/test/cwl/echo_string.cwl,sha256=uBmj7qdRV3GFHQxbXvVeRqiOnqc2L-oHYELGGiJJC9M,845
+toil/test/cwl/echo_string_scatter_capture_stdout.cwl,sha256=5FGemb98l2SP0e3ajeHfeE9-FKrmKfDzQmFixxu_kJM,1090
+toil/test/cwl/file_from_directory.cwl,sha256=0SQUY6rJgqW9zhgX5RN-vjn1smDQweThAwKC5vy5fNk,536
+toil/test/cwl/glob_dir.cwl,sha256=3a1VRsCTMgY0he8lxa-7OJJIeDHBry83DIEHguuIBwk,236
+toil/test/cwl/load_contents.cwl,sha256=YASiGkUQPEa9dz6btNccARLI7sPppXmm5XaePIOpek8,464
+toil/test/cwl/measure_default_memory.cwl,sha256=ZGVgLpnKNxOobjOEWc7EF-spCrDqhYrBHx9MjnJm2ew,252
+toil/test/cwl/mpi_simple.cwl,sha256=xgsOk2yGbAHL3pwtCtxZd6_c9Lopl1xh32dO0D6-Qbc,470
+toil/test/cwl/not_run_required_input.cwl,sha256=DK8CeCEw8thWiqvoRQmFQcZq6I3HLrt_7gzbYk1te-c,836
+toil/test/cwl/nvidia_smi.cwl,sha256=peKLDFC9_0zEt7CoRLCQDtAE5bjfotok8Ljmn1nBVtA,474
+toil/test/cwl/preemptible.cwl,sha256=BLmrYR3nZX89p1I0-8vGuE-hqKEUbfsuY-CWDcf32BY,304
+toil/test/cwl/preemptible_expression.cwl,sha256=T_90Y6dBe9nDCjp8Hg4dv9xFsaWVsKSHv5nZ2mafBZ8,639
+toil/test/cwl/revsort.cwl,sha256=BDAyPb1Tpkp55I_XIiZ3_7dXzQJxxkXo_2CHSk5lcEw,2023
+toil/test/cwl/revsort2.cwl,sha256=LNXgxDVC2aIhPTTgOdDcKteDLmi3y3vPAFF_GdURCcQ,2024
+toil/test/cwl/revtool.cwl,sha256=qzl3FHpaF41KPpxP9yhrOxUCsSm1bjsr2XXFpBZ_LkM,1301
+toil/test/cwl/revtool2.cwl,sha256=CwJT3A6mmjBtneDzVDEfcYqoIerKm7A7A6UcyrVWrqo,767
+toil/test/cwl/s3_secondary_file.cwl,sha256=aHxO8EwWDxJb4CzuAt3VJfbQaHPQARLs7XVJ5DtMITs,378
+toil/test/cwl/scatter_duplicate_outputs.cwl,sha256=1ubeij5YQhjHe0igq5xL-Caje6gheIMfA5HKBJrBeh8,699
+toil/test/cwl/seqtk_seq.cwl,sha256=uR7wlwxlNLkA_hIFglgiWGoOftQqFk4sH7Wo5zF60-c,406
+toil/test/cwl/sorttool.cwl,sha256=c1fhFZ_ekTMuEAM0nikUPd2j-etPQL8MqyuSJLNadtc,1060
+toil/test/cwl/stream.cwl,sha256=jtyYdmSyCeI6uoOeX5Nb_LMIXhR5Sqmu8dGSr_Y2Z8g,732
+toil/test/cwl/test_filename_conflict_detection.cwl,sha256=wVrc9EXmO74tgaEe4oE-EMpmQiHIuUFbLh0-qVisVZo,699
+toil/test/cwl/test_filename_conflict_detection_at_root.cwl,sha256=G3clUTFeeGZt5xPi2SNs05W7I-RT0OEN2C8xKHzQ300,695
+toil/test/cwl/test_filename_conflict_resolution.cwl,sha256=sIoXi61RzCkzD1MTCoglRYAXo8xaE1JiC6irvSANK0I,717
+toil/test/docs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/docs/scriptsTest.py,sha256=UKtoAhBejHE7ID0LxibGSoDaHaZXCBHJlMwXqv7KD6s,5806
+toil/test/jobStores/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/jobStores/jobStoreTest.py,sha256=QEma-WTO-9kzp298LJXVUifXc1yP3OutKa3D0G7opkY,69620
+toil/test/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/lib/dockerTest.py,sha256=w9VZ7KHGz3eEdvV9McqT7NgXXWENkizubaEaiPDVeh4,15607
+toil/test/lib/test_conversions.py,sha256=JSwdTRYklpofPV3VANHC7vHZ7WcpEWOZD6G9Tkjd45w,7232
+toil/test/lib/test_ec2.py,sha256=p3GfCgSSLqZQ-oanHk1sdIuP1wVUwQvXKsXzWl5ow0I,4183
+toil/test/lib/test_integration.py,sha256=E87W-WiOqeHbHNou2d8Nb2GOhjH4XTKL9JH8esQpL2M,4634
+toil/test/lib/test_misc.py,sha256=X1o4Dw1PcbnS1Y_gTR2q4STwqRjXYjSEUy2Q1BxeijM,2766
+toil/test/lib/aws/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/lib/aws/test_iam.py,sha256=2YTrL6r0WIybOBFltU0bJ4XOADT6vlRRXfbsvexjBt8,6921
+toil/test/lib/aws/test_s3.py,sha256=NpYO0GnACbGpaKPwM0yeObxqBoFYJv92RUP7VdtompE,3061
+toil/test/lib/aws/test_utils.py,sha256=_JI_FfpyONfLE4HduibcAPF7_Y39MUx4H6wk7KqdWw8,2253
+toil/test/mesos/MesosDataStructuresTest.py,sha256=IcV-bNWJcMnij0WruhTk4RTmGROTTcU3pav5e4gHPfA,3225
+toil/test/mesos/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/mesos/helloWorld.py,sha256=xX65tKSBIKAxguBoAe-6Twp2XcBK1QEnKp5LRVImgK4,2204
+toil/test/mesos/stress.py,sha256=0_-l6SvPc0qgwF0bsJgMm1-cmKx-LZ1-_4XlfghPU7s,2126
+toil/test/options/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/options/options.py,sha256=xpp0PZKilYeXwkXUBszRZSC_LziX_rPi9shsQlemuuo,1474
+toil/test/provisioners/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/provisioners/clusterScalerTest.py,sha256=-Q5epOMHynfnlNZfpVXMU48puw_G9fyLiW8Gl8Qrk5o,44463
+toil/test/provisioners/clusterTest.py,sha256=rTBsPJVUtJJ3HFHPKyFiy3Tz22whisdNnZu9R5-gVv8,9658
+toil/test/provisioners/gceProvisionerTest.py,sha256=sB5aPWFx0xLuvkLuJaJrd1Lc-p_MutAfkMWKHxherZI,13601
+toil/test/provisioners/provisionerTest.py,sha256=_JAvTs9bjynVpRkJI0VLPHZw-Y7kHI9B1vaWR4RomKA,2179
+toil/test/provisioners/restartScript.py,sha256=GodLqsIiYNxXFWQtyYHrxACI1fSUeGzcltO6qOdznj4,416
+toil/test/provisioners/aws/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/provisioners/aws/awsProvisionerTest.py,sha256=aSAfNM0DDzkJU63ZHaCBtu-dwO5wc3Cup5IQ9o4XkNM,23710
+toil/test/server/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/server/serverTest.py,sha256=4daj22UNwzWXqTTTmgjDyIFeG8Js4iv-ZmBxeyHcjhs,27553
+toil/test/sort/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/sort/restart_sort.py,sha256=A-1pWMhSIHSbtib-u1rvOFbhRqW_mQlf6dEbelFs7Q0,11358
+toil/test/sort/sort.py,sha256=ty46x-3-8Gj21itM8V31HLRZN7JGLF37xPM5aIDx9dA,11187
+toil/test/sort/sortTest.py,sha256=0dUZ0RCzE66bRcmOHJUD5MFg4UkSRbwhnHVkzX54wI4,12239
+toil/test/src/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/src/autoDeploymentTest.py,sha256=Oqy3j-jBeMCgu66wrxkDVUKFdqvkQ7aMj7GN6gKG7cE,23947
+toil/test/src/busTest.py,sha256=HVmXGTet496PZ0f8qW6NVPz9kLZigBTo4aNWN6iTbAk,5409
+toil/test/src/checkpointTest.py,sha256=LahYir7B3FNttP4OhbiYFKjxIftjTiuIXHC83xsxzNI,4464
+toil/test/src/deferredFunctionTest.py,sha256=FP6VQ_eKPcSsxuhWx1n02G3Myu4D3RFUgMSN7Y2RY_8,13360
+toil/test/src/dockerCheckTest.py,sha256=CuXBewb1ba4rOO3YOrmChxPvdOfJGXNcT8P47HcaY1g,4407
+toil/test/src/environmentTest.py,sha256=k-WsZ3-9Xn0Vctd8tBQTPR_fVqY-f1VHC5U3_d7qdd4,4239
+toil/test/src/fileStoreTest.py,sha256=7Rh9qRGEB5nBdcerRz-7QLfq47pyfS1XQSKCOaQQS3w,73186
+toil/test/src/helloWorldTest.py,sha256=vPxXEYDZZuMynm_yQ5ZZPcm3AzXdYLT9bs0kP72OM2w,1727
+toil/test/src/importExportFileTest.py,sha256=mlYMR8jh967KgvX37yYmI-cd_E8bcqr7_LvBhiOkAzQ,7669
+toil/test/src/jobDescriptionTest.py,sha256=ops9NpnUa1aKGPrTOXU3jTwiDszCRJzHHAZzQx8bF10,4335
+toil/test/src/jobEncapsulationTest.py,sha256=K1Q2m_1ZrXC6OI5ms_JSltEsGvuE1O_M5rWST6VWiBg,2463
+toil/test/src/jobFileStoreTest.py,sha256=88slShZfPJgVrEP6pTwuVxPJ-cROwMzdIdgPlogdg18,8977
+toil/test/src/jobServiceTest.py,sha256=EDhU86qPUfK0yMZy8Kc1CAgTFt-s3YCPFmRfGsTsoGE,17510
+toil/test/src/jobTest.py,sha256=Kb-i3E-EDZQFFH4UuBQU0oduVBejeRY1zH_tlPWz6vc,27813
+toil/test/src/miscTests.py,sha256=lG1wozuqyXTq5_egV0bEbHtDnjM0b5CT0VpJYGV5clI,7798
+toil/test/src/promisedRequirementTest.py,sha256=Xu91RdffN5Vd0LWuIE4g4c1sc51SPB64KEhbqoU7XWY,9580
+toil/test/src/promisesTest.py,sha256=HpFIDWWkEjdEA-vIAyX_Rn9oYwFOHMvSDSlOkihy-PE,2318
+toil/test/src/realtimeLoggerTest.py,sha256=bvr7YDS_co48fmdKo-c0bBXn2fnzvUAFRMODNyTkvfQ,2443
+toil/test/src/regularLogTest.py,sha256=T6-rU_qKczGroLnoDVuZj1xcxJHVQvk2klwhFX9vfnk,4308
+toil/test/src/resourceTest.py,sha256=hE4KnAlKAAAYphSp-Edv9z3Q__jP2P3PVZGlZfPZL-0,11071
+toil/test/src/restartDAGTest.py,sha256=U6xLIBtOBH-FneR1JUA03bIEBreHuKR3jxCfDum4dic,6227
+toil/test/src/resumabilityTest.py,sha256=8PpAWCkgdAEvKCneOVGGaY77sxTSbPgJyN_C-qGSw-c,4183
+toil/test/src/retainTempDirTest.py,sha256=vmNb2cplGoWgRQn71KcD3HdA2Fxx421SGAky_k9ibgg,4589
+toil/test/src/systemTest.py,sha256=6qKhsl0k1zegb5v7D92CswSSoDGkQz9Z9nJSVN6UCmw,2271
+toil/test/src/threadingTest.py,sha256=9umRwuZc2LFE3eT36Yg65XulKl0QzEkk289sn14GPbA,5229
+toil/test/src/toilContextManagerTest.py,sha256=vM8AgCCghzI5GVginyyhaZZFGZF6xF42-NXl2S0quhY,3114
+toil/test/src/userDefinedJobArgTypeTest.py,sha256=5PaS_418DbCAk7csGmgx3VC90mB-9Y1X116b9LSLs1w,2869
+toil/test/src/workerTest.py,sha256=88Mz9ES62IijTkLdnzCxB3ZVEtLS2fxbIVlfhjI4SwI,6334
+toil/test/utils/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
+toil/test/utils/toilDebugTest.py,sha256=FlS8_0jKF5d-Y_g4RucRWQDJtUUM6nsjNCrjxVgqjRQ,9096
+toil/test/utils/toilKillTest.py,sha256=qMYnMjeqZGxXan8k0ITaK7D80YYVmfdplFDV0LIJ0t4,3494
+toil/test/utils/utilsTest.py,sha256=cHDWs_KOud1nIEQ13M5GNV_SE4rOPAtoCb43MbZD9l8,19513
+toil/test/wdl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/test/wdl/wdltoil_test.py,sha256=yHLJGkEEet-aLrcAcs15iVvvWxuE4NUYs-v78DKIXqg,40105
+toil/test/wdl/wdltoil_test_kubernetes.py,sha256=a45TojDEwksW7MYk1F0KzQdgXJRktQYOsq36CfpBvuo,2818
+toil/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/utils/toilClean.py,sha256=X6Fws6LVqa-ScUITMTomV5iohXa3yz_rAIFnUfXlqZU,1850
+toil/utils/toilConfig.py,sha256=Ki6gGV-9d21z06u-A0meE2H0MjJUCT4mQEsMmERHn8o,1502
+toil/utils/toilDebugFile.py,sha256=HdBOe6IX6xyzGjDf_ZDxCTWaeA9lFO94UexGV1oeptE,6302
+toil/utils/toilDebugJob.py,sha256=K3j5wqDBzLHRGwThE_PDVN0-yKFl7xETDWXrNe6EnQc,10796
+toil/utils/toilDestroyCluster.py,sha256=OvwlKgomHiLptN8GjLouBzfFCo-SyLfrRWF4sv0kPww,1416
+toil/utils/toilKill.py,sha256=21zOstvFb32cwQlhMsG5Q4lPT2CSnZ7OXEK1mmyLmtk,2751
+toil/utils/toilLaunchCluster.py,sha256=nKoqmbAnadoZNKx7plzyZzAgMj6yn38tu2LOQqjLNUU,12931
+toil/utils/toilMain.py,sha256=Lz7dtkpE8urTRgimRjewKvbh4Xgh6l0OJRtxX203LyI,2790
+toil/utils/toilRsyncCluster.py,sha256=cR-4o9KpoyBdObCwQgpAqpO30VK3gGzwHKOGyQHGQeQ,2150
+toil/utils/toilServer.py,sha256=4XbyOHQHgMWWrCWj9Uz1M-jLQheV2Ju-DQ_fNdnBg1o,1178
+toil/utils/toilSshCluster.py,sha256=QSz2w1vJfiBVicz3ooLqNJM_BRKrF3N6mxWdbmF9Pbo,2840
+toil/utils/toilStats.py,sha256=I8ERYFA0NxYDC8meBoMkxABmVfTlvYWnOBRP8BfVGEc,25615
+toil/utils/toilStatus.py,sha256=qacxW5lcguvmhUi1b4cjm1acJik0zpsP7CsUuZyX-fo,20424
+toil/utils/toilUpdateEC2Instances.py,sha256=dreH9Vc2qUoc0he5AwqiFmqdOQp3tMmIfkjWm7GS5qE,1295
+toil/wdl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+toil/wdl/utils.py,sha256=U0TqbVTsap0VdeZjrUf4l71A7Zns-Hkso1B1Zdp2LRk,1316
+toil/wdl/wdltoil.py,sha256=WQY6bJKErqjfLnXVahe8dJmDyW75qdtiwmTuH5_qRtM,239255
+toil-8.0.0.dist-info/LICENSE,sha256=YVxVi652J1ZDmtC3EMP5r0EbK85-hm_pzogiULmlqUA,12862
+toil-8.0.0.dist-info/METADATA,sha256=B3SObwKGhQzZW2p92CSPbw8dmSWFQP4M45MKedRkl4I,8305
+toil-8.0.0.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+toil-8.0.0.dist-info/entry_points.txt,sha256=EF2yFhV2UYuJGr-OjMkUOd3RyOCgRWQbS6XJtBJ25eM,436
+toil-8.0.0.dist-info/top_level.txt,sha256=1ydj7IXvHS9tMT5OVTSSpub6ZOaQeIn3KGCgJqaikF0,5
+toil-8.0.0.dist-info/RECORD,,

{toil-7.0.0.dist-info → toil-8.0.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

toil-7.0.0.dist-info/METADATA

@@ -1,158 +0,0 @@
-Metadata-Version: 2.1
-Name: toil
-Version: 7.0.0
-Summary: Pipeline management software for clusters.
-Home-page: https://github.com/DataBiosphere/toil
-Author: Benedict Paten and the Toil community
-Author-email: toil-community@googlegroups.com
-License: Apache License v2.0
-Classifier: Development Status :: 5 - Production/Stable
-Classifier: Environment :: Console
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: Intended Audience :: Healthcare Industry
-Classifier: License :: OSI Approved :: Apache Software License
-Classifier: Natural Language :: English
-Classifier: Operating System :: MacOS :: MacOS X
-Classifier: Operating System :: POSIX
-Classifier: Operating System :: POSIX :: Linux
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Topic :: Scientific/Engineering
-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Topic :: Scientific/Engineering :: Astronomy
-Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
-Classifier: Topic :: Scientific/Engineering :: Information Analysis
-Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
-Classifier: Topic :: System :: Distributed Computing
-Classifier: Topic :: Utilities
-Requires-Python: >=3.8
-Description-Content-Type: text/x-rst
-License-File: LICENSE
-Requires-Dist: dill <0.4,>=0.3.2
-Requires-Dist: requests <=2.31.0
-Requires-Dist: docker <8,>=6.1.0
-Requires-Dist: urllib3 <3,>=1.26.0
-Requires-Dist: python-dateutil
-Requires-Dist: psutil <6,>=3.0.1
-Requires-Dist: PyPubSub <5,>=4.0.3
-Requires-Dist: addict <2.5,>=2.2.1
-Requires-Dist: enlighten <2,>=1.5.2
-Requires-Dist: configargparse <2,>=1.7
-Requires-Dist: ruamel.yaml >=0.15
-Requires-Dist: pyyaml <7,>=6
-Requires-Dist: typing-extensions <5,>=4.6.2
-Requires-Dist: coloredlogs <16,>=15
-Provides-Extra: all
-Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts] <2,>=1.28.3.post2 ; extra == 'all'
-Requires-Dist: mypy-boto3-iam <2,>=1.28.3.post2 ; extra == 'all'
-Requires-Dist: mypy-boto3-s3 <2,>=1.28.3.post2 ; extra == 'all'
-Requires-Dist: moto <6,>=5.0.3 ; extra == 'all'
-Requires-Dist: ec2-metadata <3 ; extra == 'all'
-Requires-Dist: cwltool ==3.1.20240508115724 ; extra == 'all'
-Requires-Dist: schema-salad <9,>=8.4.20230128170514 ; extra == 'all'
-Requires-Dist: galaxy-tool-util <25 ; extra == 'all'
-Requires-Dist: galaxy-util <25 ; extra == 'all'
-Requires-Dist: ruamel.yaml <=0.19,>=0.15 ; extra == 'all'
-Requires-Dist: ruamel.yaml.clib >=0.2.6 ; extra == 'all'
-Requires-Dist: networkx !=2.8.1,<4 ; extra == 'all'
-Requires-Dist: CacheControl[filecache] ; extra == 'all'
-Requires-Dist: pynacl <2,>=1.4.0 ; extra == 'all'
-Requires-Dist: apache-libcloud <3,>=2.2.1 ; extra == 'all'
-Requires-Dist: google-cloud-storage <=2.8.0,>=2 ; extra == 'all'
-Requires-Dist: google-auth <3,>=2.18.1 ; extra == 'all'
-Requires-Dist: kubernetes <22,>=12.0.1 ; extra == 'all'
-Requires-Dist: kubernetes-stubs ==v22.6.0post1 ; extra == 'all'
-Requires-Dist: types-urllib3 ; extra == 'all'
-Requires-Dist: types-PyYAML ; extra == 'all'
-Requires-Dist: idna >=2 ; extra == 'all'
-Requires-Dist: miniwdl ==1.12.0 ; extra == 'all'
-Requires-Dist: wdlparse ==0.1.0 ; extra == 'all'
-Requires-Dist: connexion[swagger-ui] <3,>=2.10.0 ; extra == 'all'
-Requires-Dist: flask <3,>=2.0 ; extra == 'all'
-Requires-Dist: werkzeug <3,>=2.0 ; extra == 'all'
-Requires-Dist: flask-cors ==4.0.1 ; extra == 'all'
-Requires-Dist: gunicorn ==22.0.0 ; extra == 'all'
-Requires-Dist: celery <6,>=5.1.0 ; extra == 'all'
-Requires-Dist: wes-service <5,>=4.0.0 ; extra == 'all'
-Requires-Dist: ruamel.yaml <0.19,>=0.15 ; extra == 'all'
-Requires-Dist: pymesos <0.4,>=0.3.15 ; (python_version < "3.11") and extra == 'all'
-Requires-Dist: graphlib-backport ==1.0 ; (python_version < "3.9") and extra == 'all'
-Provides-Extra: aws
-Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts] <2,>=1.28.3.post2 ; extra == 'aws'
-Requires-Dist: mypy-boto3-iam <2,>=1.28.3.post2 ; extra == 'aws'
-Requires-Dist: mypy-boto3-s3 <2,>=1.28.3.post2 ; extra == 'aws'
-Requires-Dist: moto <6,>=5.0.3 ; extra == 'aws'
-Requires-Dist: ec2-metadata <3 ; extra == 'aws'
-Provides-Extra: cwl
-Requires-Dist: cwltool ==3.1.20240508115724 ; extra == 'cwl'
-Requires-Dist: schema-salad <9,>=8.4.20230128170514 ; extra == 'cwl'
-Requires-Dist: galaxy-tool-util <25 ; extra == 'cwl'
-Requires-Dist: galaxy-util <25 ; extra == 'cwl'
-Requires-Dist: ruamel.yaml <=0.19,>=0.15 ; extra == 'cwl'
-Requires-Dist: ruamel.yaml.clib >=0.2.6 ; extra == 'cwl'
-Requires-Dist: networkx !=2.8.1,<4 ; extra == 'cwl'
-Requires-Dist: CacheControl[filecache] ; extra == 'cwl'
-Provides-Extra: encryption
-Requires-Dist: pynacl <2,>=1.4.0 ; extra == 'encryption'
-Provides-Extra: google
-Requires-Dist: apache-libcloud <3,>=2.2.1 ; extra == 'google'
-Requires-Dist: google-cloud-storage <=2.8.0,>=2 ; extra == 'google'
-Requires-Dist: google-auth <3,>=2.18.1 ; extra == 'google'
-Provides-Extra: htcondor
-Requires-Dist: htcondor <11,>=10.2.0.post1 ; (sys_platform!="darwin") and extra == 'htcondor'
-Provides-Extra: kubernetes
-Requires-Dist: kubernetes <22,>=12.0.1 ; extra == 'kubernetes'
-Requires-Dist: kubernetes-stubs ==v22.6.0post1 ; extra == 'kubernetes'
-Requires-Dist: types-urllib3 ; extra == 'kubernetes'
-Requires-Dist: types-PyYAML ; extra == 'kubernetes'
-Requires-Dist: idna >=2 ; extra == 'kubernetes'
-Provides-Extra: mesos
-Requires-Dist: pymesos <0.4,>=0.3.15 ; (python_version < "3.11") and extra == 'mesos'
-Provides-Extra: server
-Requires-Dist: connexion[swagger-ui] <3,>=2.10.0 ; extra == 'server'
-Requires-Dist: flask <3,>=2.0 ; extra == 'server'
-Requires-Dist: werkzeug <3,>=2.0 ; extra == 'server'
-Requires-Dist: flask-cors ==4.0.1 ; extra == 'server'
-Requires-Dist: gunicorn ==22.0.0 ; extra == 'server'
-Requires-Dist: celery <6,>=5.1.0 ; extra == 'server'
-Requires-Dist: wes-service <5,>=4.0.0 ; extra == 'server'
-Requires-Dist: ruamel.yaml <0.19,>=0.15 ; extra == 'server'
-Provides-Extra: wdl
-Requires-Dist: miniwdl ==1.12.0 ; extra == 'wdl'
-Requires-Dist: wdlparse ==0.1.0 ; extra == 'wdl'
-Requires-Dist: graphlib-backport ==1.0 ; (python_version < "3.9") and extra == 'wdl'
-
-.. image:: https://badges.gitter.im/bd2k-genomics-toil/Lobby.svg
-   :alt: Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby
-   :target: https://gitter.im/bd2k-genomics-toil/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
-
-Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system,
-written entirely in Python, and designed around the principles of functional
-programming. It supports running workflows written in either Common Workflow Language (`CWL`_) 1.0-1.2 or 
-Workflow Description Language (`WDL`_) 1.0-1.1, as well as having its own rich Python API for writing workflows against. 
-It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud. 
-
-* Check the `website`_ for a description of Toil and its features.
-* Full documentation for the latest stable release can be found at
-  `Read the Docs`_.
-* Please subscribe to low-volume `announce`_ mailing list so we keep you informed
-* Google Groups discussion `forum`_
-* See our occasional `blog`_ for tutorials. 
-* Use `biostars`_ channel for discussion.
-
-.. _website: http://toil.ucsc-cgl.org/
-.. _Read the Docs: https://toil.readthedocs.io/en/latest
-.. _announce: https://groups.google.com/forum/#!forum/toil-announce
-.. _forum: https://groups.google.com/forum/#!forum/toil-community
-.. _blog: https://toilpipelines.wordpress.com/
-.. _biostars: https://www.biostars.org/t/toil/
-.. _CWL: https://www.commonwl.org/
-.. _WDL: https://openwdl.org/
-
-Notes:
-
-* Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
-* Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).