toil 6.1.0a1__py3-none-any.whl → 7.0.0__py3-none-any.whl

toil-7.0.0.dist-info/METADATA

@@ -0,0 +1,158 @@
+Metadata-Version: 2.1
+Name: toil
+Version: 7.0.0
+Summary: Pipeline management software for clusters.
+Home-page: https://github.com/DataBiosphere/toil
+Author: Benedict Paten and the Toil community
+Author-email: toil-community@googlegroups.com
+License: Apache License v2.0
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Healthcare Industry
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Natural Language :: English
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Astronomy
+Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Classifier: Topic :: System :: Distributed Computing
+Classifier: Topic :: Utilities
+Requires-Python: >=3.8
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+Requires-Dist: dill <0.4,>=0.3.2
+Requires-Dist: requests <=2.31.0
+Requires-Dist: docker <8,>=6.1.0
+Requires-Dist: urllib3 <3,>=1.26.0
+Requires-Dist: python-dateutil
+Requires-Dist: psutil <6,>=3.0.1
+Requires-Dist: PyPubSub <5,>=4.0.3
+Requires-Dist: addict <2.5,>=2.2.1
+Requires-Dist: enlighten <2,>=1.5.2
+Requires-Dist: configargparse <2,>=1.7
+Requires-Dist: ruamel.yaml >=0.15
+Requires-Dist: pyyaml <7,>=6
+Requires-Dist: typing-extensions <5,>=4.6.2
+Requires-Dist: coloredlogs <16,>=15
+Provides-Extra: all
+Requires-Dist: boto3-stubs[autoscaling,boto3,ec2,iam,s3,sdb,sts] <2,>=1.28.3.post2 ; extra == 'all'
+Requires-Dist: mypy-boto3-iam <2,>=1.28.3.post2 ; extra == 'all'
+Requires-Dist: mypy-boto3-s3 <2,>=1.28.3.post2 ; extra == 'all'
+Requires-Dist: moto <6,>=5.0.3 ; extra == 'all'
+Requires-Dist: ec2-metadata <3 ; extra == 'all'
+Requires-Dist: cwltool ==3.1.20240508115724 ; extra == 'all'
+Requires-Dist: schema-salad <9,>=8.4.20230128170514 ; extra == 'all'
+Requires-Dist: galaxy-tool-util <25 ; extra == 'all'
+Requires-Dist: galaxy-util <25 ; extra == 'all'
+Requires-Dist: ruamel.yaml <=0.19,>=0.15 ; extra == 'all'
+Requires-Dist: ruamel.yaml.clib >=0.2.6 ; extra == 'all'
+Requires-Dist: networkx !=2.8.1,<4 ; extra == 'all'
+Requires-Dist: CacheControl[filecache] ; extra == 'all'
+Requires-Dist: pynacl <2,>=1.4.0 ; extra == 'all'
+Requires-Dist: apache-libcloud <3,>=2.2.1 ; extra == 'all'
+Requires-Dist: google-cloud-storage <=2.8.0,>=2 ; extra == 'all'
+Requires-Dist: google-auth <3,>=2.18.1 ; extra == 'all'
+Requires-Dist: kubernetes <22,>=12.0.1 ; extra == 'all'
+Requires-Dist: kubernetes-stubs ==v22.6.0post1 ; extra == 'all'
+Requires-Dist: types-urllib3 ; extra == 'all'
+Requires-Dist: types-PyYAML ; extra == 'all'
+Requires-Dist: idna >=2 ; extra == 'all'
+Requires-Dist: miniwdl ==1.12.0 ; extra == 'all'
+Requires-Dist: wdlparse ==0.1.0 ; extra == 'all'
+Requires-Dist: connexion[swagger-ui] <3,>=2.10.0 ; extra == 'all'
+Requires-Dist: flask <3,>=2.0 ; extra == 'all'
+Requires-Dist: werkzeug <3,>=2.0 ; extra == 'all'
+Requires-Dist: flask-cors ==4.0.1 ; extra == 'all'
+Requires-Dist: gunicorn ==22.0.0 ; extra == 'all'
+Requires-Dist: celery <6,>=5.1.0 ; extra == 'all'
+Requires-Dist: wes-service <5,>=4.0.0 ; extra == 'all'
+Requires-Dist: ruamel.yaml <0.19,>=0.15 ; extra == 'all'
+Requires-Dist: pymesos <0.4,>=0.3.15 ; (python_version < "3.11") and extra == 'all'
+Requires-Dist: graphlib-backport ==1.0 ; (python_version < "3.9") and extra == 'all'
+Provides-Extra: aws
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+Requires-Dist: mypy-boto3-iam <2,>=1.28.3.post2 ; extra == 'aws'
+Requires-Dist: mypy-boto3-s3 <2,>=1.28.3.post2 ; extra == 'aws'
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+Requires-Dist: ec2-metadata <3 ; extra == 'aws'
+Provides-Extra: cwl
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+Requires-Dist: ruamel.yaml <=0.19,>=0.15 ; extra == 'cwl'
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+Requires-Dist: CacheControl[filecache] ; extra == 'cwl'
+Provides-Extra: encryption
+Requires-Dist: pynacl <2,>=1.4.0 ; extra == 'encryption'
+Provides-Extra: google
+Requires-Dist: apache-libcloud <3,>=2.2.1 ; extra == 'google'
+Requires-Dist: google-cloud-storage <=2.8.0,>=2 ; extra == 'google'
+Requires-Dist: google-auth <3,>=2.18.1 ; extra == 'google'
+Provides-Extra: htcondor
+Requires-Dist: htcondor <11,>=10.2.0.post1 ; (sys_platform!="darwin") and extra == 'htcondor'
+Provides-Extra: kubernetes
+Requires-Dist: kubernetes <22,>=12.0.1 ; extra == 'kubernetes'
+Requires-Dist: kubernetes-stubs ==v22.6.0post1 ; extra == 'kubernetes'
+Requires-Dist: types-urllib3 ; extra == 'kubernetes'
+Requires-Dist: types-PyYAML ; extra == 'kubernetes'
+Requires-Dist: idna >=2 ; extra == 'kubernetes'
+Provides-Extra: mesos
+Requires-Dist: pymesos <0.4,>=0.3.15 ; (python_version < "3.11") and extra == 'mesos'
+Provides-Extra: server
+Requires-Dist: connexion[swagger-ui] <3,>=2.10.0 ; extra == 'server'
+Requires-Dist: flask <3,>=2.0 ; extra == 'server'
+Requires-Dist: werkzeug <3,>=2.0 ; extra == 'server'
+Requires-Dist: flask-cors ==4.0.1 ; extra == 'server'
+Requires-Dist: gunicorn ==22.0.0 ; extra == 'server'
+Requires-Dist: celery <6,>=5.1.0 ; extra == 'server'
+Requires-Dist: wes-service <5,>=4.0.0 ; extra == 'server'
+Requires-Dist: ruamel.yaml <0.19,>=0.15 ; extra == 'server'
+Provides-Extra: wdl
+Requires-Dist: miniwdl ==1.12.0 ; extra == 'wdl'
+Requires-Dist: wdlparse ==0.1.0 ; extra == 'wdl'
+Requires-Dist: graphlib-backport ==1.0 ; (python_version < "3.9") and extra == 'wdl'
+
+.. image:: https://badges.gitter.im/bd2k-genomics-toil/Lobby.svg
+   :alt: Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby
+   :target: https://gitter.im/bd2k-genomics-toil/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
+
+Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system,
+written entirely in Python, and designed around the principles of functional
+programming. It supports running workflows written in either Common Workflow Language (`CWL`_) 1.0-1.2 or 
+Workflow Description Language (`WDL`_) 1.0-1.1, as well as having its own rich Python API for writing workflows against. 
+It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud. 
+
+* Check the `website`_ for a description of Toil and its features.
+* Full documentation for the latest stable release can be found at
+  `Read the Docs`_.
+* Please subscribe to low-volume `announce`_ mailing list so we keep you informed
+* Google Groups discussion `forum`_
+* See our occasional `blog`_ for tutorials. 
+* Use `biostars`_ channel for discussion.
+
+.. _website: http://toil.ucsc-cgl.org/
+.. _Read the Docs: https://toil.readthedocs.io/en/latest
+.. _announce: https://groups.google.com/forum/#!forum/toil-announce
+.. _forum: https://groups.google.com/forum/#!forum/toil-community
+.. _blog: https://toilpipelines.wordpress.com/
+.. _biostars: https://www.biostars.org/t/toil/
+.. _CWL: https://www.commonwl.org/
+.. _WDL: https://openwdl.org/
+
+Notes:
+
+* Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
+* Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).

{toil-6.1.0a1.dist-info → toil-7.0.0.dist-info}/RECORD

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 toil/server/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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@@ -106,11 +106,14 @@ toil/server/wes/abstract_backend.py,sha256=hn7lGq0xznSs7b3x_Ocu6a83EPWgymO8Q1BLN
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 toil/test/batchSystems/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
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 toil/test/batchSystems/test_lsf_helper.py,sha256=vgWORofYN63TIUOUeMv0Zbjm8EbJiRM_-aHppERLwr4,4936
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@@ -118,7 +121,7 @@ toil/test/cwl/colon_test_output_job.yaml,sha256=BbXFRuWsRJV6JpJAutnHywJl_AbwEcwN
 toil/test/cwl/conditional_wf.cwl,sha256=SAtUSmD5ta-DVG0SRHpT8EtOp8ztm-6v9Vskcl09c3s,357
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 toil/test/cwl/directory_from_directory.cwl,sha256=-hjZuUs5fMpKMnbj-FZAgcns4iWsCFJV6Qh7-fsRn1I,556
 toil/test/cwl/download.cwl,sha256=XQvz8or_-k6pwyhgeUeJOew0_b3BeHcF08EaalbySz4,296
 toil/test/cwl/download_directory.cwl,sha256=RdPmElFeHJqXGWVqEqR5VFMmXDiJubhTcM9hIrAhKY4,535
@@ -140,61 +143,64 @@ toil/test/cwl/revsort2.cwl,sha256=LNXgxDVC2aIhPTTgOdDcKteDLmi3y3vPAFF_GdURCcQ,20
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 toil/test/src/jobEncapsulationTest.py,sha256=yb6dZiKiodEQDua7nL4SKHKWVMCoGpIxbquabuxlexM,2461
 toil/test/src/jobFileStoreTest.py,sha256=E7YCrxdZhv2Jxy1rCT8RXL0sKqY-QIgRBYNqgiyRtKs,8740
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 toil/test/src/miscTests.py,sha256=9mmM3wexZqkFHVRzQHOWtq3zOqnctIN7_32SZEufzGA,7879
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 toil/test/src/promisesTest.py,sha256=UY-9crkMTirWerbp8OtzbIAZPOpB5_3JoXHrYucfFhw,2317
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 toil/test/src/regularLogTest.py,sha256=BohWsMQnPgH51DvYkGHx6PuBWmCojn2fRFACtMuSvZs,4372
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 toil/test/src/restartDAGTest.py,sha256=BeLzl9BVHECZt8WLXbSW9vWL-NrzroMT_q12Ngpm_UY,6070
@@ -204,34 +210,35 @@ toil/test/src/systemTest.py,sha256=2eC8BZfNYzjs0CA_7OSSIU7Wez3REP7DIhQniLp7pn0,2
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 toil/test/src/userDefinedJobArgTypeTest.py,sha256=SXb3WmFWNtsIKKP-78eHL6tfabu4T8C0Spo9OK1v6xM,2848
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 toil/test/utils/__init__.py,sha256=9h1rcqYjjnn97DpDEJf8tlNOIDx0XiXyQwh0F_81y0k,612
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 toil/test/utils/toilKillTest.py,sha256=Wu0hANeRspLpqzdZUnWt-yt8wBhbxjEijOkjCWfNrkg,3541
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{toil-6.1.0a1.dist-info → toil-7.0.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.38.4)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

toil-6.1.0a1.dist-info/METADATA

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-Name: toil
-Version: 6.1.0a1
-Summary: Pipeline management software for clusters.
-Home-page: https://github.com/DataBiosphere/toil
-Author: Benedict Paten and the Toil community
-Author-email: toil-community@googlegroups.com
-License: Apache License v2.0
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-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Topic :: Scientific/Engineering :: Astronomy
-Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
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-Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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