toil 5.12.0__py3-none-any.whl → 6.1.0__py3-none-any.whl

toil/cwl/__init__.py

@@ -11,48 +11,44 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-import logging
+import sys
 from functools import lru_cache
 
-from pkg_resources import DistributionNotFound, get_distribution
-
-try:
-    # Setuptools 66+ will raise this if any package on the system has a version that isn't PEP440.
-    # See https://github.com/pypa/setuptools/issues/3772
-    from setuptools.extern.packaging.version import InvalidVersion  # type: ignore
-except ImportError:
-    # It's not clear that this exception is really part fo the public API, so fake it.
-    class InvalidVersion(Exception):  # type: ignore
-        pass
-
-
+from importlib.metadata import version, PackageNotFoundError
 from toil.version import cwltool_version
 
-logger = logging.getLogger(__name__)
-
 
 @lru_cache(maxsize=None)
 def check_cwltool_version() -> None:
     """
-    Check if the installed cwltool version matches Toil's expected version. A
-    warning is printed if the versions differ.
+    Check if the installed cwltool version matches Toil's expected version.
+
+    A warning is printed to standard error if the versions differ. We do not
+    assume that logging is set up already. Safe to call repeatedly; only one
+    warning will be printed.
     """
+
     try:
-        installed_version = get_distribution("cwltool").version
+        # Setuptools 66+ will raise this if any package on the system has a version that isn't PEP440.
+        # See https://github.com/pypa/setuptools/issues/3772
+        from setuptools.extern.packaging.version import InvalidVersion  # type: ignore
+    except ImportError:
+        # It's not clear that this exception is really part fo the public API, so fake it.
+        class InvalidVersion(Exception):  # type: ignore
+            pass
+
+    try:
+        installed_version = version("cwltool")
 
         if installed_version != cwltool_version:
-            logger.warning(
-                f"You are using cwltool version {installed_version}, which might not be compatible with "
-                f"version {cwltool_version} used by Toil. You should consider running 'pip install cwltool=="
-                f"{cwltool_version}' to match Toil's cwltool version."
+            sys.stderr.write(
+                f"WARNING: You are using cwltool version {installed_version}, which is "
+                f"not the version Toil is tested against. To install the correct cwltool "
+                f"for Toil, do:\n\n\tpip install cwltool=={cwltool_version}\n\n"
             )
-    except DistributionNotFound:
-        logger.debug("cwltool is not installed.")
-    except InvalidVersion as e:
-        logger.warning(
-            f"Could not determine the installed version of cwltool because a package "
-            f"with an unacceptable version is installed: {e}"
-        )
-
-
-check_cwltool_version()
+    except InvalidVersion:
+        # cwltool installation can't be inspected
+        pass
+    except PackageNotFoundError:
+        # cwltool is not installed
+        pass