tnfr 3.0.3__py3-none-any.whl → 8.5.0__py3-none-any.whl
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- tnfr/__init__.py +375 -56
- tnfr/__init__.pyi +33 -0
- tnfr/_compat.py +10 -0
- tnfr/_generated_version.py +34 -0
- tnfr/_version.py +49 -0
- tnfr/_version.pyi +7 -0
- tnfr/alias.py +723 -0
- tnfr/alias.pyi +108 -0
- tnfr/backends/__init__.py +354 -0
- tnfr/backends/jax_backend.py +173 -0
- tnfr/backends/numpy_backend.py +238 -0
- tnfr/backends/optimized_numpy.py +420 -0
- tnfr/backends/torch_backend.py +408 -0
- tnfr/cache.py +171 -0
- tnfr/cache.pyi +13 -0
- tnfr/cli/__init__.py +110 -0
- tnfr/cli/__init__.pyi +26 -0
- tnfr/cli/arguments.py +489 -0
- tnfr/cli/arguments.pyi +29 -0
- tnfr/cli/execution.py +914 -0
- tnfr/cli/execution.pyi +70 -0
- tnfr/cli/interactive_validator.py +614 -0
- tnfr/cli/utils.py +51 -0
- tnfr/cli/utils.pyi +7 -0
- tnfr/cli/validate.py +236 -0
- tnfr/compat/__init__.py +85 -0
- tnfr/compat/dataclass.py +136 -0
- tnfr/compat/jsonschema_stub.py +61 -0
- tnfr/compat/matplotlib_stub.py +73 -0
- tnfr/compat/numpy_stub.py +155 -0
- tnfr/config/__init__.py +224 -0
- tnfr/config/__init__.pyi +10 -0
- tnfr/config/constants.py +104 -0
- tnfr/config/constants.pyi +12 -0
- tnfr/config/defaults.py +54 -0
- tnfr/config/defaults_core.py +212 -0
- tnfr/config/defaults_init.py +33 -0
- tnfr/config/defaults_metric.py +104 -0
- tnfr/config/feature_flags.py +81 -0
- tnfr/config/feature_flags.pyi +16 -0
- tnfr/config/glyph_constants.py +31 -0
- tnfr/config/init.py +77 -0
- tnfr/config/init.pyi +8 -0
- tnfr/config/operator_names.py +254 -0
- tnfr/config/operator_names.pyi +36 -0
- tnfr/config/physics_derivation.py +354 -0
- tnfr/config/presets.py +83 -0
- tnfr/config/presets.pyi +7 -0
- tnfr/config/security.py +927 -0
- tnfr/config/thresholds.py +114 -0
- tnfr/config/tnfr_config.py +498 -0
- tnfr/constants/__init__.py +92 -0
- tnfr/constants/__init__.pyi +92 -0
- tnfr/constants/aliases.py +33 -0
- tnfr/constants/aliases.pyi +27 -0
- tnfr/constants/init.py +33 -0
- tnfr/constants/init.pyi +12 -0
- tnfr/constants/metric.py +104 -0
- tnfr/constants/metric.pyi +19 -0
- tnfr/core/__init__.py +33 -0
- tnfr/core/container.py +226 -0
- tnfr/core/default_implementations.py +329 -0
- tnfr/core/interfaces.py +279 -0
- tnfr/dynamics/__init__.py +238 -0
- tnfr/dynamics/__init__.pyi +83 -0
- tnfr/dynamics/adaptation.py +267 -0
- tnfr/dynamics/adaptation.pyi +7 -0
- tnfr/dynamics/adaptive_sequences.py +189 -0
- tnfr/dynamics/adaptive_sequences.pyi +14 -0
- tnfr/dynamics/aliases.py +23 -0
- tnfr/dynamics/aliases.pyi +19 -0
- tnfr/dynamics/bifurcation.py +232 -0
- tnfr/dynamics/canonical.py +229 -0
- tnfr/dynamics/canonical.pyi +48 -0
- tnfr/dynamics/coordination.py +385 -0
- tnfr/dynamics/coordination.pyi +25 -0
- tnfr/dynamics/dnfr.py +3034 -0
- tnfr/dynamics/dnfr.pyi +26 -0
- tnfr/dynamics/dynamic_limits.py +225 -0
- tnfr/dynamics/feedback.py +252 -0
- tnfr/dynamics/feedback.pyi +24 -0
- tnfr/dynamics/fused_dnfr.py +454 -0
- tnfr/dynamics/homeostasis.py +157 -0
- tnfr/dynamics/homeostasis.pyi +14 -0
- tnfr/dynamics/integrators.py +661 -0
- tnfr/dynamics/integrators.pyi +36 -0
- tnfr/dynamics/learning.py +310 -0
- tnfr/dynamics/learning.pyi +33 -0
- tnfr/dynamics/metabolism.py +254 -0
- tnfr/dynamics/nbody.py +796 -0
- tnfr/dynamics/nbody_tnfr.py +783 -0
- tnfr/dynamics/propagation.py +326 -0
- tnfr/dynamics/runtime.py +908 -0
- tnfr/dynamics/runtime.pyi +77 -0
- tnfr/dynamics/sampling.py +36 -0
- tnfr/dynamics/sampling.pyi +7 -0
- tnfr/dynamics/selectors.py +711 -0
- tnfr/dynamics/selectors.pyi +85 -0
- tnfr/dynamics/structural_clip.py +207 -0
- tnfr/errors/__init__.py +37 -0
- tnfr/errors/contextual.py +492 -0
- tnfr/execution.py +223 -0
- tnfr/execution.pyi +45 -0
- tnfr/extensions/__init__.py +205 -0
- tnfr/extensions/__init__.pyi +18 -0
- tnfr/extensions/base.py +173 -0
- tnfr/extensions/base.pyi +35 -0
- tnfr/extensions/business/__init__.py +71 -0
- tnfr/extensions/business/__init__.pyi +11 -0
- tnfr/extensions/business/cookbook.py +88 -0
- tnfr/extensions/business/cookbook.pyi +8 -0
- tnfr/extensions/business/health_analyzers.py +202 -0
- tnfr/extensions/business/health_analyzers.pyi +9 -0
- tnfr/extensions/business/patterns.py +183 -0
- tnfr/extensions/business/patterns.pyi +8 -0
- tnfr/extensions/medical/__init__.py +73 -0
- tnfr/extensions/medical/__init__.pyi +11 -0
- tnfr/extensions/medical/cookbook.py +88 -0
- tnfr/extensions/medical/cookbook.pyi +8 -0
- tnfr/extensions/medical/health_analyzers.py +181 -0
- tnfr/extensions/medical/health_analyzers.pyi +9 -0
- tnfr/extensions/medical/patterns.py +163 -0
- tnfr/extensions/medical/patterns.pyi +8 -0
- tnfr/flatten.py +262 -0
- tnfr/flatten.pyi +21 -0
- tnfr/gamma.py +354 -0
- tnfr/gamma.pyi +36 -0
- tnfr/glyph_history.py +377 -0
- tnfr/glyph_history.pyi +35 -0
- tnfr/glyph_runtime.py +19 -0
- tnfr/glyph_runtime.pyi +8 -0
- tnfr/immutable.py +218 -0
- tnfr/immutable.pyi +36 -0
- tnfr/initialization.py +203 -0
- tnfr/initialization.pyi +65 -0
- tnfr/io.py +10 -0
- tnfr/io.pyi +13 -0
- tnfr/locking.py +37 -0
- tnfr/locking.pyi +7 -0
- tnfr/mathematics/__init__.py +79 -0
- tnfr/mathematics/backend.py +453 -0
- tnfr/mathematics/backend.pyi +99 -0
- tnfr/mathematics/dynamics.py +408 -0
- tnfr/mathematics/dynamics.pyi +90 -0
- tnfr/mathematics/epi.py +391 -0
- tnfr/mathematics/epi.pyi +65 -0
- tnfr/mathematics/generators.py +242 -0
- tnfr/mathematics/generators.pyi +29 -0
- tnfr/mathematics/metrics.py +119 -0
- tnfr/mathematics/metrics.pyi +16 -0
- tnfr/mathematics/operators.py +239 -0
- tnfr/mathematics/operators.pyi +59 -0
- tnfr/mathematics/operators_factory.py +124 -0
- tnfr/mathematics/operators_factory.pyi +11 -0
- tnfr/mathematics/projection.py +87 -0
- tnfr/mathematics/projection.pyi +33 -0
- tnfr/mathematics/runtime.py +182 -0
- tnfr/mathematics/runtime.pyi +64 -0
- tnfr/mathematics/spaces.py +256 -0
- tnfr/mathematics/spaces.pyi +83 -0
- tnfr/mathematics/transforms.py +305 -0
- tnfr/mathematics/transforms.pyi +62 -0
- tnfr/metrics/__init__.py +79 -0
- tnfr/metrics/__init__.pyi +20 -0
- tnfr/metrics/buffer_cache.py +163 -0
- tnfr/metrics/buffer_cache.pyi +24 -0
- tnfr/metrics/cache_utils.py +214 -0
- tnfr/metrics/coherence.py +2009 -0
- tnfr/metrics/coherence.pyi +129 -0
- tnfr/metrics/common.py +158 -0
- tnfr/metrics/common.pyi +35 -0
- tnfr/metrics/core.py +316 -0
- tnfr/metrics/core.pyi +13 -0
- tnfr/metrics/diagnosis.py +833 -0
- tnfr/metrics/diagnosis.pyi +86 -0
- tnfr/metrics/emergence.py +245 -0
- tnfr/metrics/export.py +179 -0
- tnfr/metrics/export.pyi +7 -0
- tnfr/metrics/glyph_timing.py +379 -0
- tnfr/metrics/glyph_timing.pyi +81 -0
- tnfr/metrics/learning_metrics.py +280 -0
- tnfr/metrics/learning_metrics.pyi +21 -0
- tnfr/metrics/phase_coherence.py +351 -0
- tnfr/metrics/phase_compatibility.py +349 -0
- tnfr/metrics/reporting.py +183 -0
- tnfr/metrics/reporting.pyi +25 -0
- tnfr/metrics/sense_index.py +1203 -0
- tnfr/metrics/sense_index.pyi +9 -0
- tnfr/metrics/trig.py +373 -0
- tnfr/metrics/trig.pyi +13 -0
- tnfr/metrics/trig_cache.py +233 -0
- tnfr/metrics/trig_cache.pyi +10 -0
- tnfr/multiscale/__init__.py +32 -0
- tnfr/multiscale/hierarchical.py +517 -0
- tnfr/node.py +763 -0
- tnfr/node.pyi +139 -0
- tnfr/observers.py +255 -130
- tnfr/observers.pyi +31 -0
- tnfr/ontosim.py +144 -137
- tnfr/ontosim.pyi +28 -0
- tnfr/operators/__init__.py +1672 -0
- tnfr/operators/__init__.pyi +31 -0
- tnfr/operators/algebra.py +277 -0
- tnfr/operators/canonical_patterns.py +420 -0
- tnfr/operators/cascade.py +267 -0
- tnfr/operators/cycle_detection.py +358 -0
- tnfr/operators/definitions.py +4108 -0
- tnfr/operators/definitions.pyi +78 -0
- tnfr/operators/grammar.py +1164 -0
- tnfr/operators/grammar.pyi +140 -0
- tnfr/operators/hamiltonian.py +710 -0
- tnfr/operators/health_analyzer.py +809 -0
- tnfr/operators/jitter.py +272 -0
- tnfr/operators/jitter.pyi +11 -0
- tnfr/operators/lifecycle.py +314 -0
- tnfr/operators/metabolism.py +618 -0
- tnfr/operators/metrics.py +2138 -0
- tnfr/operators/network_analysis/__init__.py +27 -0
- tnfr/operators/network_analysis/source_detection.py +186 -0
- tnfr/operators/nodal_equation.py +395 -0
- tnfr/operators/pattern_detection.py +660 -0
- tnfr/operators/patterns.py +669 -0
- tnfr/operators/postconditions/__init__.py +38 -0
- tnfr/operators/postconditions/mutation.py +236 -0
- tnfr/operators/preconditions/__init__.py +1226 -0
- tnfr/operators/preconditions/coherence.py +305 -0
- tnfr/operators/preconditions/dissonance.py +236 -0
- tnfr/operators/preconditions/emission.py +128 -0
- tnfr/operators/preconditions/mutation.py +580 -0
- tnfr/operators/preconditions/reception.py +125 -0
- tnfr/operators/preconditions/resonance.py +364 -0
- tnfr/operators/registry.py +74 -0
- tnfr/operators/registry.pyi +9 -0
- tnfr/operators/remesh.py +1809 -0
- tnfr/operators/remesh.pyi +26 -0
- tnfr/operators/structural_units.py +268 -0
- tnfr/operators/unified_grammar.py +105 -0
- tnfr/parallel/__init__.py +54 -0
- tnfr/parallel/auto_scaler.py +234 -0
- tnfr/parallel/distributed.py +384 -0
- tnfr/parallel/engine.py +238 -0
- tnfr/parallel/gpu_engine.py +420 -0
- tnfr/parallel/monitoring.py +248 -0
- tnfr/parallel/partitioner.py +459 -0
- tnfr/py.typed +0 -0
- tnfr/recipes/__init__.py +22 -0
- tnfr/recipes/cookbook.py +743 -0
- tnfr/rng.py +178 -0
- tnfr/rng.pyi +26 -0
- tnfr/schemas/__init__.py +8 -0
- tnfr/schemas/grammar.json +94 -0
- tnfr/sdk/__init__.py +107 -0
- tnfr/sdk/__init__.pyi +19 -0
- tnfr/sdk/adaptive_system.py +173 -0
- tnfr/sdk/adaptive_system.pyi +21 -0
- tnfr/sdk/builders.py +370 -0
- tnfr/sdk/builders.pyi +51 -0
- tnfr/sdk/fluent.py +1121 -0
- tnfr/sdk/fluent.pyi +74 -0
- tnfr/sdk/templates.py +342 -0
- tnfr/sdk/templates.pyi +41 -0
- tnfr/sdk/utils.py +341 -0
- tnfr/secure_config.py +46 -0
- tnfr/security/__init__.py +70 -0
- tnfr/security/database.py +514 -0
- tnfr/security/subprocess.py +503 -0
- tnfr/security/validation.py +290 -0
- tnfr/selector.py +247 -0
- tnfr/selector.pyi +19 -0
- tnfr/sense.py +378 -0
- tnfr/sense.pyi +23 -0
- tnfr/services/__init__.py +17 -0
- tnfr/services/orchestrator.py +325 -0
- tnfr/sparse/__init__.py +39 -0
- tnfr/sparse/representations.py +492 -0
- tnfr/structural.py +705 -0
- tnfr/structural.pyi +83 -0
- tnfr/telemetry/__init__.py +35 -0
- tnfr/telemetry/cache_metrics.py +226 -0
- tnfr/telemetry/cache_metrics.pyi +64 -0
- tnfr/telemetry/nu_f.py +422 -0
- tnfr/telemetry/nu_f.pyi +108 -0
- tnfr/telemetry/verbosity.py +36 -0
- tnfr/telemetry/verbosity.pyi +15 -0
- tnfr/tokens.py +58 -0
- tnfr/tokens.pyi +36 -0
- tnfr/tools/__init__.py +20 -0
- tnfr/tools/domain_templates.py +478 -0
- tnfr/tools/sequence_generator.py +846 -0
- tnfr/topology/__init__.py +13 -0
- tnfr/topology/asymmetry.py +151 -0
- tnfr/trace.py +543 -0
- tnfr/trace.pyi +42 -0
- tnfr/tutorials/__init__.py +38 -0
- tnfr/tutorials/autonomous_evolution.py +285 -0
- tnfr/tutorials/interactive.py +1576 -0
- tnfr/tutorials/structural_metabolism.py +238 -0
- tnfr/types.py +775 -0
- tnfr/types.pyi +357 -0
- tnfr/units.py +68 -0
- tnfr/units.pyi +13 -0
- tnfr/utils/__init__.py +282 -0
- tnfr/utils/__init__.pyi +215 -0
- tnfr/utils/cache.py +4223 -0
- tnfr/utils/cache.pyi +470 -0
- tnfr/utils/callbacks.py +375 -0
- tnfr/utils/callbacks.pyi +49 -0
- tnfr/utils/chunks.py +108 -0
- tnfr/utils/chunks.pyi +22 -0
- tnfr/utils/data.py +428 -0
- tnfr/utils/data.pyi +74 -0
- tnfr/utils/graph.py +85 -0
- tnfr/utils/graph.pyi +10 -0
- tnfr/utils/init.py +821 -0
- tnfr/utils/init.pyi +80 -0
- tnfr/utils/io.py +559 -0
- tnfr/utils/io.pyi +66 -0
- tnfr/utils/numeric.py +114 -0
- tnfr/utils/numeric.pyi +21 -0
- tnfr/validation/__init__.py +257 -0
- tnfr/validation/__init__.pyi +85 -0
- tnfr/validation/compatibility.py +460 -0
- tnfr/validation/compatibility.pyi +6 -0
- tnfr/validation/config.py +73 -0
- tnfr/validation/graph.py +139 -0
- tnfr/validation/graph.pyi +18 -0
- tnfr/validation/input_validation.py +755 -0
- tnfr/validation/invariants.py +712 -0
- tnfr/validation/rules.py +253 -0
- tnfr/validation/rules.pyi +44 -0
- tnfr/validation/runtime.py +279 -0
- tnfr/validation/runtime.pyi +28 -0
- tnfr/validation/sequence_validator.py +162 -0
- tnfr/validation/soft_filters.py +170 -0
- tnfr/validation/soft_filters.pyi +32 -0
- tnfr/validation/spectral.py +164 -0
- tnfr/validation/spectral.pyi +42 -0
- tnfr/validation/validator.py +1266 -0
- tnfr/validation/window.py +39 -0
- tnfr/validation/window.pyi +1 -0
- tnfr/visualization/__init__.py +98 -0
- tnfr/visualization/cascade_viz.py +256 -0
- tnfr/visualization/hierarchy.py +284 -0
- tnfr/visualization/sequence_plotter.py +784 -0
- tnfr/viz/__init__.py +60 -0
- tnfr/viz/matplotlib.py +278 -0
- tnfr/viz/matplotlib.pyi +35 -0
- tnfr-8.5.0.dist-info/METADATA +573 -0
- tnfr-8.5.0.dist-info/RECORD +353 -0
- tnfr-8.5.0.dist-info/entry_points.txt +3 -0
- tnfr-3.0.3.dist-info/licenses/LICENSE.txt → tnfr-8.5.0.dist-info/licenses/LICENSE.md +1 -1
- tnfr/constants.py +0 -183
- tnfr/dynamics.py +0 -543
- tnfr/helpers.py +0 -198
- tnfr/main.py +0 -37
- tnfr/operators.py +0 -296
- tnfr-3.0.3.dist-info/METADATA +0 -35
- tnfr-3.0.3.dist-info/RECORD +0 -13
- {tnfr-3.0.3.dist-info → tnfr-8.5.0.dist-info}/WHEEL +0 -0
- {tnfr-3.0.3.dist-info → tnfr-8.5.0.dist-info}/top_level.txt +0 -0
tnfr/sense.py
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"""Sense calculations and structural operator symbol vector analysis.
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This module implements the sense index (Si) calculation and related vector
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operations for analyzing the distribution of structural operator applications.
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The 'glyph rose' visualization represents the distribution of structural operator
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symbols in a circular format, where each glyph corresponds to an angle representing
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the associated structural operator.
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"""
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from __future__ import annotations
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import math
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from collections import Counter
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from collections.abc import Iterable, Iterator, Mapping
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from itertools import tee
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from typing import Any, Callable, TypeVar
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import networkx as nx
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from .alias import get_attr
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from .utils import CallbackEvent, callback_manager
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from .config.constants import (
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ANGLE_MAP,
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GLYPHS_CANONICAL,
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)
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from .constants import get_graph_param
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from .constants.aliases import ALIAS_EPI, ALIAS_SI
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from .glyph_history import append_metric, count_glyphs, ensure_history
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from .glyph_runtime import last_glyph
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from .utils import clamp01, kahan_sum_nd
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from .types import NodeId, SigmaVector, TNFRGraph
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from .utils import get_numpy
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# -------------------------
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# Canon: circular glyph order and angles
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# -------------------------
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GLYPH_UNITS: dict[str, complex] = {
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g: complex(math.cos(a), math.sin(a)) for g, a in ANGLE_MAP.items()
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}
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__all__ = (
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"GLYPH_UNITS",
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"glyph_angle",
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"glyph_unit",
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"sigma_vector_node",
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"sigma_vector",
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"sigma_vector_from_graph",
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"push_sigma_snapshot",
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"register_sigma_callback",
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"sigma_rose",
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)
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# -------------------------
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# Basic utilities
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# -------------------------
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T = TypeVar("T")
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def _resolve_glyph(g: str, mapping: Mapping[str, T]) -> T:
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"""Return ``mapping[g]`` or raise ``KeyError`` with a standard message."""
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try:
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return mapping[g]
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except KeyError as e: # pragma: no cover - small helper
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|
+
raise KeyError(f"Unknown glyph: {g}") from e
|
|
69
|
+
|
|
70
|
+
|
|
71
|
+
def glyph_angle(g: str) -> float:
|
|
72
|
+
"""Return the canonical angle for structural operator symbol ``g``.
|
|
73
|
+
|
|
74
|
+
Each structural operator symbol (glyph) is mapped to a specific angle
|
|
75
|
+
in the circular representation used for sense vector calculations.
|
|
76
|
+
"""
|
|
77
|
+
|
|
78
|
+
return float(_resolve_glyph(g, ANGLE_MAP))
|
|
79
|
+
|
|
80
|
+
|
|
81
|
+
def glyph_unit(g: str) -> complex:
|
|
82
|
+
"""Return the unit vector for structural operator symbol ``g``.
|
|
83
|
+
|
|
84
|
+
Each structural operator symbol (glyph) corresponds to a unit vector
|
|
85
|
+
in the complex plane, used for aggregating operator applications.
|
|
86
|
+
"""
|
|
87
|
+
|
|
88
|
+
return _resolve_glyph(g, GLYPH_UNITS)
|
|
89
|
+
|
|
90
|
+
|
|
91
|
+
MODE_FUNCS: dict[str, Callable[[Mapping[str, Any]], float]] = {
|
|
92
|
+
"Si": lambda nd: clamp01(get_attr(nd, ALIAS_SI, 0.5)),
|
|
93
|
+
"EPI": lambda nd: max(0.0, get_attr(nd, ALIAS_EPI, 0.0)),
|
|
94
|
+
}
|
|
95
|
+
|
|
96
|
+
|
|
97
|
+
def _weight(nd: Mapping[str, Any], mode: str) -> float:
|
|
98
|
+
return MODE_FUNCS.get(mode, lambda _: 1.0)(nd)
|
|
99
|
+
|
|
100
|
+
|
|
101
|
+
def _node_weight(
|
|
102
|
+
nd: Mapping[str, Any], weight_mode: str
|
|
103
|
+
) -> tuple[str, float, complex] | None:
|
|
104
|
+
"""Return ``(glyph, weight, weighted_unit)`` or ``None`` if no glyph."""
|
|
105
|
+
g = last_glyph(nd)
|
|
106
|
+
if not g:
|
|
107
|
+
return None
|
|
108
|
+
w = _weight(nd, weight_mode)
|
|
109
|
+
z = glyph_unit(g) * w # precompute weighted unit vector
|
|
110
|
+
return g, w, z
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
def _sigma_cfg(G: TNFRGraph) -> dict[str, Any]:
|
|
114
|
+
return get_graph_param(G, "SIGMA", dict)
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
def _to_complex(val: complex | float | int) -> complex:
|
|
118
|
+
"""Return ``val`` as complex, promoting real numbers."""
|
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119
|
+
|
|
120
|
+
if isinstance(val, complex):
|
|
121
|
+
return val
|
|
122
|
+
if isinstance(val, (int, float)):
|
|
123
|
+
return complex(val, 0.0)
|
|
124
|
+
raise TypeError("values must be an iterable of real or complex numbers")
|
|
125
|
+
|
|
126
|
+
|
|
127
|
+
def _empty_sigma(fallback_angle: float) -> SigmaVector:
|
|
128
|
+
"""Return an empty σ-vector with ``fallback_angle``.
|
|
129
|
+
|
|
130
|
+
Helps centralise the default structure returned when no values are
|
|
131
|
+
available for σ calculations.
|
|
132
|
+
"""
|
|
133
|
+
|
|
134
|
+
return {
|
|
135
|
+
"x": 0.0,
|
|
136
|
+
"y": 0.0,
|
|
137
|
+
"mag": 0.0,
|
|
138
|
+
"angle": float(fallback_angle),
|
|
139
|
+
"n": 0,
|
|
140
|
+
}
|
|
141
|
+
|
|
142
|
+
|
|
143
|
+
# -------------------------
|
|
144
|
+
# σ per node and global σ
|
|
145
|
+
# -------------------------
|
|
146
|
+
|
|
147
|
+
|
|
148
|
+
def _sigma_from_iterable(
|
|
149
|
+
values: Iterable[complex | float | int] | complex | float | int,
|
|
150
|
+
fallback_angle: float = 0.0,
|
|
151
|
+
) -> SigmaVector:
|
|
152
|
+
"""Normalise vectors in the σ-plane.
|
|
153
|
+
|
|
154
|
+
``values`` may contain complex or real numbers; real inputs are promoted to
|
|
155
|
+
complex with zero imaginary part. The returned dictionary includes the
|
|
156
|
+
number of processed values under the ``"n"`` key.
|
|
157
|
+
"""
|
|
158
|
+
|
|
159
|
+
if isinstance(values, Iterable) and not isinstance(
|
|
160
|
+
values, (str, bytes, bytearray, Mapping)
|
|
161
|
+
):
|
|
162
|
+
iterator = iter(values)
|
|
163
|
+
else:
|
|
164
|
+
iterator = iter((values,))
|
|
165
|
+
|
|
166
|
+
np = get_numpy()
|
|
167
|
+
if np is not None:
|
|
168
|
+
iterator, np_iter = tee(iterator)
|
|
169
|
+
arr = np.fromiter((_to_complex(v) for v in np_iter), dtype=np.complex128)
|
|
170
|
+
cnt = int(arr.size)
|
|
171
|
+
if cnt == 0:
|
|
172
|
+
return _empty_sigma(fallback_angle)
|
|
173
|
+
x = float(np.mean(arr.real))
|
|
174
|
+
y = float(np.mean(arr.imag))
|
|
175
|
+
mag = float(np.hypot(x, y))
|
|
176
|
+
ang = float(np.arctan2(y, x)) if mag > 0 else float(fallback_angle)
|
|
177
|
+
return {
|
|
178
|
+
"x": float(x),
|
|
179
|
+
"y": float(y),
|
|
180
|
+
"mag": float(mag),
|
|
181
|
+
"angle": float(ang),
|
|
182
|
+
"n": int(cnt),
|
|
183
|
+
}
|
|
184
|
+
cnt = 0
|
|
185
|
+
|
|
186
|
+
def pair_iter() -> Iterator[tuple[float, float]]:
|
|
187
|
+
nonlocal cnt
|
|
188
|
+
for val in iterator:
|
|
189
|
+
z = _to_complex(val)
|
|
190
|
+
cnt += 1
|
|
191
|
+
yield (z.real, z.imag)
|
|
192
|
+
|
|
193
|
+
sum_x, sum_y = kahan_sum_nd(pair_iter(), dims=2)
|
|
194
|
+
|
|
195
|
+
if cnt == 0:
|
|
196
|
+
return _empty_sigma(fallback_angle)
|
|
197
|
+
|
|
198
|
+
x = sum_x / cnt
|
|
199
|
+
y = sum_y / cnt
|
|
200
|
+
mag = math.hypot(x, y)
|
|
201
|
+
ang = math.atan2(y, x) if mag > 0 else float(fallback_angle)
|
|
202
|
+
return {
|
|
203
|
+
"x": float(x),
|
|
204
|
+
"y": float(y),
|
|
205
|
+
"mag": float(mag),
|
|
206
|
+
"angle": float(ang),
|
|
207
|
+
"n": int(cnt),
|
|
208
|
+
}
|
|
209
|
+
|
|
210
|
+
|
|
211
|
+
def _ema_update(prev: SigmaVector, current: SigmaVector, alpha: float) -> SigmaVector:
|
|
212
|
+
"""Exponential moving average update for σ vectors."""
|
|
213
|
+
x = (1 - alpha) * prev["x"] + alpha * current["x"]
|
|
214
|
+
y = (1 - alpha) * prev["y"] + alpha * current["y"]
|
|
215
|
+
mag = math.hypot(x, y)
|
|
216
|
+
ang = math.atan2(y, x)
|
|
217
|
+
return {
|
|
218
|
+
"x": float(x),
|
|
219
|
+
"y": float(y),
|
|
220
|
+
"mag": float(mag),
|
|
221
|
+
"angle": float(ang),
|
|
222
|
+
"n": int(current["n"]),
|
|
223
|
+
}
|
|
224
|
+
|
|
225
|
+
|
|
226
|
+
def _sigma_from_nodes(
|
|
227
|
+
nodes: Iterable[Mapping[str, Any]],
|
|
228
|
+
weight_mode: str,
|
|
229
|
+
fallback_angle: float = 0.0,
|
|
230
|
+
) -> tuple[SigmaVector, list[tuple[str, float, complex]]]:
|
|
231
|
+
"""Aggregate weighted glyph vectors for ``nodes``.
|
|
232
|
+
|
|
233
|
+
Returns the aggregated σ vector and the list of ``(glyph, weight, vector)``
|
|
234
|
+
triples used in the calculation.
|
|
235
|
+
"""
|
|
236
|
+
|
|
237
|
+
nws = [nw for nd in nodes if (nw := _node_weight(nd, weight_mode))]
|
|
238
|
+
sv = _sigma_from_iterable((nw[2] for nw in nws), fallback_angle)
|
|
239
|
+
return sv, nws
|
|
240
|
+
|
|
241
|
+
|
|
242
|
+
def sigma_vector_node(
|
|
243
|
+
G: TNFRGraph, n: NodeId, weight_mode: str | None = None
|
|
244
|
+
) -> SigmaVector | None:
|
|
245
|
+
"""Return the σ vector for node ``n`` using the configured weighting."""
|
|
246
|
+
|
|
247
|
+
cfg = _sigma_cfg(G)
|
|
248
|
+
nd = G.nodes[n]
|
|
249
|
+
weight_mode = weight_mode or cfg.get("weight", "Si")
|
|
250
|
+
sv, nws = _sigma_from_nodes([nd], weight_mode)
|
|
251
|
+
if not nws:
|
|
252
|
+
return None
|
|
253
|
+
g, w, _ = nws[0]
|
|
254
|
+
if sv["mag"] == 0:
|
|
255
|
+
sv["angle"] = glyph_angle(g)
|
|
256
|
+
sv["glyph"] = g
|
|
257
|
+
sv["w"] = float(w)
|
|
258
|
+
return sv
|
|
259
|
+
|
|
260
|
+
|
|
261
|
+
def sigma_vector(dist: Mapping[str, float]) -> SigmaVector:
|
|
262
|
+
"""Compute Σ⃗ from a glyph distribution.
|
|
263
|
+
|
|
264
|
+
``dist`` may contain raw counts or proportions. All ``(glyph, weight)``
|
|
265
|
+
pairs are converted to vectors and passed to :func:`_sigma_from_iterable`.
|
|
266
|
+
The resulting vector includes the number of processed pairs under ``n``.
|
|
267
|
+
"""
|
|
268
|
+
|
|
269
|
+
vectors = (glyph_unit(g) * float(w) for g, w in dist.items())
|
|
270
|
+
return _sigma_from_iterable(vectors)
|
|
271
|
+
|
|
272
|
+
|
|
273
|
+
def sigma_vector_from_graph(
|
|
274
|
+
G: TNFRGraph, weight_mode: str | None = None
|
|
275
|
+
) -> SigmaVector:
|
|
276
|
+
"""Global vector in the σ sense plane for a graph.
|
|
277
|
+
|
|
278
|
+
Parameters
|
|
279
|
+
----------
|
|
280
|
+
G:
|
|
281
|
+
NetworkX graph with per-node states.
|
|
282
|
+
weight_mode:
|
|
283
|
+
How to weight each node ("Si", "EPI" or ``None`` for unit weight).
|
|
284
|
+
|
|
285
|
+
Returns
|
|
286
|
+
-------
|
|
287
|
+
dict[str, float]
|
|
288
|
+
Cartesian components, magnitude and angle of the average vector.
|
|
289
|
+
"""
|
|
290
|
+
|
|
291
|
+
if not isinstance(G, nx.Graph):
|
|
292
|
+
raise TypeError("sigma_vector_from_graph requires a networkx.Graph")
|
|
293
|
+
|
|
294
|
+
cfg = _sigma_cfg(G)
|
|
295
|
+
weight_mode = weight_mode or cfg.get("weight", "Si")
|
|
296
|
+
sv, _ = _sigma_from_nodes((nd for _, nd in G.nodes(data=True)), weight_mode)
|
|
297
|
+
return sv
|
|
298
|
+
|
|
299
|
+
|
|
300
|
+
# -------------------------
|
|
301
|
+
# History / series
|
|
302
|
+
# -------------------------
|
|
303
|
+
|
|
304
|
+
|
|
305
|
+
def push_sigma_snapshot(G: TNFRGraph, t: float | None = None) -> None:
|
|
306
|
+
"""Record a global σ snapshot (and optional per-node traces) for ``G``."""
|
|
307
|
+
|
|
308
|
+
cfg = _sigma_cfg(G)
|
|
309
|
+
if not cfg.get("enabled", True):
|
|
310
|
+
return
|
|
311
|
+
|
|
312
|
+
# Local history cache to avoid repeated lookups
|
|
313
|
+
hist = ensure_history(G)
|
|
314
|
+
key = cfg.get("history_key", "sigma_global")
|
|
315
|
+
|
|
316
|
+
weight_mode = cfg.get("weight", "Si")
|
|
317
|
+
sv = sigma_vector_from_graph(G, weight_mode)
|
|
318
|
+
|
|
319
|
+
# Optional exponential smoothing (EMA)
|
|
320
|
+
alpha = float(cfg.get("smooth", 0.0))
|
|
321
|
+
if alpha > 0 and hist.get(key):
|
|
322
|
+
sv = _ema_update(hist[key][-1], sv, alpha)
|
|
323
|
+
|
|
324
|
+
current_t = float(G.graph.get("_t", 0.0) if t is None else t)
|
|
325
|
+
sv["t"] = current_t
|
|
326
|
+
|
|
327
|
+
append_metric(hist, key, sv)
|
|
328
|
+
|
|
329
|
+
# Glyph count per step (useful for the glyph rose)
|
|
330
|
+
counts = count_glyphs(G, last_only=True)
|
|
331
|
+
append_metric(hist, "sigma_counts", {"t": current_t, **counts})
|
|
332
|
+
|
|
333
|
+
# Optional per-node trajectory
|
|
334
|
+
if cfg.get("per_node", False):
|
|
335
|
+
per = hist.setdefault("sigma_per_node", {})
|
|
336
|
+
for n, nd in G.nodes(data=True):
|
|
337
|
+
g = last_glyph(nd)
|
|
338
|
+
if not g:
|
|
339
|
+
continue
|
|
340
|
+
d = per.setdefault(n, [])
|
|
341
|
+
d.append({"t": current_t, "g": g, "angle": glyph_angle(g)})
|
|
342
|
+
|
|
343
|
+
|
|
344
|
+
# -------------------------
|
|
345
|
+
# Register as an automatic callback (after_step)
|
|
346
|
+
# -------------------------
|
|
347
|
+
|
|
348
|
+
|
|
349
|
+
def register_sigma_callback(G: TNFRGraph) -> None:
|
|
350
|
+
"""Attach :func:`push_sigma_snapshot` to the ``AFTER_STEP`` callback bus."""
|
|
351
|
+
|
|
352
|
+
callback_manager.register_callback(
|
|
353
|
+
G,
|
|
354
|
+
event=CallbackEvent.AFTER_STEP.value,
|
|
355
|
+
func=push_sigma_snapshot,
|
|
356
|
+
name="sigma_snapshot",
|
|
357
|
+
)
|
|
358
|
+
|
|
359
|
+
|
|
360
|
+
def sigma_rose(G: TNFRGraph, steps: int | None = None) -> dict[str, int]:
|
|
361
|
+
"""Histogram of glyphs in the last ``steps`` steps (or all)."""
|
|
362
|
+
hist = ensure_history(G)
|
|
363
|
+
counts = hist.get("sigma_counts", [])
|
|
364
|
+
if not counts:
|
|
365
|
+
return {g: 0 for g in GLYPHS_CANONICAL}
|
|
366
|
+
if steps is not None:
|
|
367
|
+
steps = int(steps)
|
|
368
|
+
if steps < 0:
|
|
369
|
+
raise ValueError("steps must be non-negative")
|
|
370
|
+
rows = counts if steps >= len(counts) else counts[-steps:] # noqa: E203
|
|
371
|
+
else:
|
|
372
|
+
rows = counts
|
|
373
|
+
counter = Counter()
|
|
374
|
+
for row in rows:
|
|
375
|
+
for k, v in row.items():
|
|
376
|
+
if k != "t":
|
|
377
|
+
counter[k] += int(v)
|
|
378
|
+
return {g: int(counter.get(g, 0)) for g in GLYPHS_CANONICAL}
|
tnfr/sense.pyi
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from collections.abc import Mapping
|
|
4
|
+
from typing import Optional
|
|
5
|
+
|
|
6
|
+
from .types import NodeId, SigmaVector, TNFRGraph
|
|
7
|
+
|
|
8
|
+
__all__: tuple[str, ...]
|
|
9
|
+
|
|
10
|
+
GLYPH_UNITS: dict[str, complex]
|
|
11
|
+
|
|
12
|
+
def glyph_angle(g: str) -> float: ...
|
|
13
|
+
def glyph_unit(g: str) -> complex: ...
|
|
14
|
+
def push_sigma_snapshot(G: TNFRGraph, t: Optional[float] = None) -> None: ...
|
|
15
|
+
def register_sigma_callback(G: TNFRGraph) -> None: ...
|
|
16
|
+
def sigma_rose(G: TNFRGraph, steps: Optional[int] = None) -> dict[str, int]: ...
|
|
17
|
+
def sigma_vector(dist: Mapping[str, float]) -> SigmaVector: ...
|
|
18
|
+
def sigma_vector_from_graph(
|
|
19
|
+
G: TNFRGraph, weight_mode: Optional[str] = None
|
|
20
|
+
) -> SigmaVector: ...
|
|
21
|
+
def sigma_vector_node(
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G: TNFRGraph, n: NodeId, weight_mode: Optional[str] = None
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) -> Optional[SigmaVector]: ...
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@@ -0,0 +1,17 @@
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1
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"""Service layer for TNFR orchestration.
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This package provides the service layer that coordinates execution of TNFR
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operator sequences while maintaining clean separation of responsibilities
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across validation, execution, dynamics, and telemetry concerns.
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Public API
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----------
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TNFROrchestrator
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Main orchestration service coordinating sequence execution.
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"""
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from __future__ import annotations
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from .orchestrator import TNFROrchestrator
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__all__ = ("TNFROrchestrator",)
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