thoth-dbmanager 0.4.0__py3-none-any.whl → 0.4.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- thoth_dbmanager/ThothDbManager.py +459 -0
- thoth_dbmanager/__init__.py +136 -0
- thoth_dbmanager/adapters/__init__.py +21 -0
- thoth_dbmanager/adapters/mariadb.py +165 -0
- thoth_dbmanager/adapters/mysql.py +165 -0
- thoth_dbmanager/adapters/oracle.py +554 -0
- thoth_dbmanager/adapters/postgresql.py +444 -0
- thoth_dbmanager/adapters/qdrant.py +189 -0
- thoth_dbmanager/adapters/sqlite.py +385 -0
- thoth_dbmanager/adapters/sqlserver.py +583 -0
- thoth_dbmanager/adapters/supabase.py +249 -0
- thoth_dbmanager/core/__init__.py +13 -0
- thoth_dbmanager/core/factory.py +272 -0
- thoth_dbmanager/core/interfaces.py +271 -0
- thoth_dbmanager/core/registry.py +220 -0
- thoth_dbmanager/documents.py +155 -0
- thoth_dbmanager/dynamic_imports.py +250 -0
- thoth_dbmanager/helpers/__init__.py +0 -0
- thoth_dbmanager/helpers/multi_db_generator.py +508 -0
- thoth_dbmanager/helpers/preprocess_values.py +159 -0
- thoth_dbmanager/helpers/schema.py +376 -0
- thoth_dbmanager/helpers/search.py +117 -0
- thoth_dbmanager/lsh/__init__.py +21 -0
- thoth_dbmanager/lsh/core.py +182 -0
- thoth_dbmanager/lsh/factory.py +76 -0
- thoth_dbmanager/lsh/manager.py +170 -0
- thoth_dbmanager/lsh/storage.py +96 -0
- thoth_dbmanager/plugins/__init__.py +23 -0
- thoth_dbmanager/plugins/mariadb.py +436 -0
- thoth_dbmanager/plugins/mysql.py +408 -0
- thoth_dbmanager/plugins/oracle.py +150 -0
- thoth_dbmanager/plugins/postgresql.py +145 -0
- thoth_dbmanager/plugins/qdrant.py +41 -0
- thoth_dbmanager/plugins/sqlite.py +170 -0
- thoth_dbmanager/plugins/sqlserver.py +149 -0
- thoth_dbmanager/plugins/supabase.py +224 -0
- {thoth_dbmanager-0.4.0.dist-info → thoth_dbmanager-0.4.2.dist-info}/METADATA +9 -6
- thoth_dbmanager-0.4.2.dist-info/RECORD +41 -0
- thoth_dbmanager-0.4.2.dist-info/top_level.txt +1 -0
- thoth_dbmanager-0.4.0.dist-info/RECORD +0 -5
- thoth_dbmanager-0.4.0.dist-info/top_level.txt +0 -1
- {thoth_dbmanager-0.4.0.dist-info → thoth_dbmanager-0.4.2.dist-info}/WHEEL +0 -0
- {thoth_dbmanager-0.4.0.dist-info → thoth_dbmanager-0.4.2.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,436 @@
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"""
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MariaDB plugin for Thoth SQL Database Manager.
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Unified implementation combining plugin architecture with full database functionality.
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"""
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import logging
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import os
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from pathlib import Path
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from threading import Lock
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from typing import Any, Dict, List, Optional, Union
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from sqlalchemy import create_engine, inspect, text
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from sqlalchemy.exc import SQLAlchemyError
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from ..core.interfaces import DbPlugin, DbAdapter
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from ..core.registry import register_plugin
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from ..documents import TableDocument, ColumnDocument, ForeignKeyDocument, SchemaDocument, IndexDocument
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logger = logging.getLogger(__name__)
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class MariaDBAdapter(DbAdapter):
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"""MariaDB database adapter with full functionality."""
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def __init__(self, connection_params: Dict[str, Any]):
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super().__init__(connection_params)
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self.engine = None
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self.host = connection_params.get('host')
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self.port = connection_params.get('port', 3306)
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self.dbname = connection_params.get('database') or connection_params.get('dbname')
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self.user = connection_params.get('user') or connection_params.get('username')
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self.password = connection_params.get('password')
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def connect(self) -> None:
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"""Establish database connection."""
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try:
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# Try different connection methods for MariaDB
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connection_methods = [
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# Use MySQL driver (MariaDB is MySQL-compatible)
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f"mysql+pymysql://{self.user}:{self.password}@{self.host}:{self.port}/{self.dbname}",
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# Use MySQL connector with explicit TCP
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f"mysql+mysqlconnector://{self.user}:{self.password}@{self.host}:{self.port}/{self.dbname}",
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# Use MariaDB connector with TCP parameters
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f"mariadb+mariadbconnector://{self.user}:{self.password}@{self.host}:{self.port}/{self.dbname}?unix_socket=",
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]
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last_error = None
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for connection_string in connection_methods:
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try:
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self.engine = create_engine(connection_string, pool_pre_ping=True)
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# Test the connection
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with self.engine.connect() as conn:
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conn.execute(text("SELECT 1"))
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self.connection = self.engine
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self._initialized = True
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logger.info(f"MariaDB connected using: {connection_string.split('://')[0]}")
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return
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except Exception as e:
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last_error = e
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logger.debug(f"MariaDB connection failed with {connection_string.split('://')[0]}: {e}")
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if self.engine:
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self.engine.dispose()
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self.engine = None
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continue
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# If all methods fail, raise the last error
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raise ConnectionError(f"Failed to connect to MariaDB: {last_error}")
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except Exception as e:
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raise ConnectionError(f"Failed to connect to MariaDB: {e}")
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def disconnect(self) -> None:
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"""Close database connection."""
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if self.engine:
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self.engine.dispose()
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self.engine = None
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self.connection = None
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def execute_query(self, query: str, params: Optional[Dict] = None, fetch: Union[str, int] = "all", timeout: int = 60) -> Any:
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"""Execute a query and return results."""
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if not self.engine:
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self.connect()
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with self.engine.connect() as connection:
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try:
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if params:
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result = connection.execute(text(query), params)
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else:
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result = connection.execute(text(query))
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# Check if this is a query that returns rows (SELECT, SHOW, etc.)
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query_upper = query.strip().upper()
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if query_upper.startswith(('SELECT', 'SHOW', 'DESCRIBE', 'DESC', 'EXPLAIN', 'WITH')):
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if fetch == "all":
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return [row._asdict() for row in result.fetchall()]
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elif fetch == "one":
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row = result.fetchone()
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return row._asdict() if row else None
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elif isinstance(fetch, int) and fetch > 0:
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return [row._asdict() for row in result.fetchmany(fetch)]
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else:
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return [row._asdict() for row in result.fetchall()]
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else:
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# For DDL/DML queries (CREATE, INSERT, UPDATE, DELETE), return rowcount
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connection.commit()
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return result.rowcount
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except SQLAlchemyError as e:
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logger.error(f"Error executing SQL: {str(e)}")
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raise e
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def get_tables_as_documents(self) -> List[TableDocument]:
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"""Return tables as document objects."""
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inspector = inspect(self.engine)
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table_names = inspector.get_table_names()
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tables = []
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for table_name in table_names:
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try:
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table_comment = inspector.get_table_comment(table_name).get('text', '')
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except SQLAlchemyError:
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table_comment = ''
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tables.append(TableDocument(
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table_name=table_name,
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schema_name="", # MariaDB doesn't have explicit schemas like PostgreSQL
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comment=table_comment or "",
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row_count=None # Could be populated if needed
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))
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return tables
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def get_columns_as_documents(self, table_name: str) -> List[ColumnDocument]:
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"""Return columns as document objects."""
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inspector = inspect(self.engine)
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columns_metadata = inspector.get_columns(table_name)
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pk_columns = inspector.get_pk_constraint(table_name).get('constrained_columns', [])
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columns = []
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for col_meta in columns_metadata:
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columns.append(ColumnDocument(
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table_name=table_name,
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column_name=col_meta['name'],
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data_type=str(col_meta['type']),
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is_nullable=col_meta.get('nullable', True),
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is_pk=col_meta['name'] in pk_columns,
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comment=col_meta.get('comment', '') or ""
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))
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return columns
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def get_foreign_keys_as_documents(self) -> List[ForeignKeyDocument]:
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"""Return foreign keys as document objects."""
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inspector = inspect(self.engine)
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all_foreign_keys = []
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for table_name in inspector.get_table_names():
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fks = inspector.get_foreign_keys(table_name)
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for fk in fks:
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all_foreign_keys.append(ForeignKeyDocument(
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source_table_name=table_name,
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source_column_name=fk['constrained_columns'][0],
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target_table_name=fk['referred_table'],
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target_column_name=fk['referred_columns'][0],
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constraint_name=fk.get('name', '')
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))
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return all_foreign_keys
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def get_schemas_as_documents(self) -> List[SchemaDocument]:
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"""Return schemas as document objects."""
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# MariaDB doesn't have explicit schemas like PostgreSQL
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return [SchemaDocument(
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schema_name="default",
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comment="Default MariaDB schema"
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)]
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def get_indexes_as_documents(self, table_name: Optional[str] = None) -> List[IndexDocument]:
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"""Return indexes as document objects."""
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inspector = inspect(self.engine)
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indexes = []
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tables = [table_name] if table_name else inspector.get_table_names()
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for tbl_name in tables:
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try:
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table_indexes = inspector.get_indexes(tbl_name)
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for idx in table_indexes:
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indexes.append(IndexDocument(
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table_name=tbl_name,
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index_name=idx['name'],
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column_names=idx['column_names'],
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is_unique=idx['unique'],
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index_type="BTREE" # Default for MariaDB
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))
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except SQLAlchemyError as e:
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logger.warning(f"Could not get indexes for table {tbl_name}: {e}")
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return indexes
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def get_unique_values(self) -> Dict[str, Dict[str, List[str]]]:
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"""Get unique values from the database."""
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# This is a placeholder implementation.
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# A more sophisticated version like in ThothPgManager should be implemented.
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return {}
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def get_example_data(self, table_name: str, number_of_rows: int = 30) -> Dict[str, List[Any]]:
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"""Get example data (most frequent values) for each column in a table."""
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inspector = inspect(self.engine)
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try:
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columns = inspector.get_columns(table_name)
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except SQLAlchemyError as e:
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logger.error(f"Error inspecting columns for table {table_name}: {e}")
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raise e
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if not columns:
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logger.warning(f"No columns found for table {table_name}")
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return {}
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most_frequent_values: Dict[str, List[Any]] = {}
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with self.engine.connect() as connection:
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for col_info in columns:
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column_name = col_info['name']
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# MariaDB uses backticks for identifier quoting (same as MySQL)
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quoted_column_name = f'`{column_name}`'
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quoted_table_name = f'`{table_name}`'
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query_str = f"""
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SELECT {quoted_column_name}
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FROM (
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SELECT {quoted_column_name}, COUNT(*) as _freq
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FROM {quoted_table_name}
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WHERE {quoted_column_name} IS NOT NULL
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GROUP BY {quoted_column_name}
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ORDER BY _freq DESC
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LIMIT :num_rows
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) as subquery;
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"""
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try:
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result = connection.execute(text(query_str), {"num_rows": number_of_rows})
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values = [row[0] for row in result]
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most_frequent_values[column_name] = values
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except SQLAlchemyError as e:
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logger.error(f"Error fetching frequent values for {column_name} in {table_name}: {e}")
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most_frequent_values[column_name] = []
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# Normalize list lengths
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max_length = 0
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if most_frequent_values:
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max_length = max(len(v) for v in most_frequent_values.values()) if most_frequent_values else 0
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for column_name in most_frequent_values:
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current_len = len(most_frequent_values[column_name])
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if current_len < max_length:
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most_frequent_values[column_name].extend([None] * (max_length - current_len))
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return most_frequent_values
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@register_plugin("mariadb")
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class MariaDBPlugin(DbPlugin):
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"""MariaDB database plugin with full functionality."""
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plugin_name = "MariaDB Plugin"
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plugin_version = "1.0.0"
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supported_db_types = ["mariadb"]
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required_dependencies = ["mariadb", "SQLAlchemy"]
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_instances = {}
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_lock = Lock()
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def __init__(self, db_root_path: str, db_mode: str = "dev", **kwargs):
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super().__init__(db_root_path, db_mode, **kwargs)
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self.db_id = None
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self.db_directory_path = None
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self.host = None
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self.port = None
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self.dbname = None
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self.user = None
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self.password = None
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# LSH manager integration (for backward compatibility)
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self._lsh_manager = None
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@classmethod
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def get_instance(cls, host: str, port: int, dbname: str, user: str, password: str,
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db_root_path: str, db_mode: str = "dev", **kwargs):
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"""Get or create a singleton instance based on connection parameters."""
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required_params = ['host', 'port', 'dbname', 'user', 'password', 'db_root_path']
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all_params = {
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'host': host,
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'port': port,
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'dbname': dbname,
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'user': user,
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'password': password,
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'db_root_path': db_root_path,
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'db_mode': db_mode,
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**kwargs
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}
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missing_params = [param for param in required_params if all_params.get(param) is None]
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if missing_params:
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raise ValueError(f"Missing required parameter{'s' if len(missing_params) > 1 else ''}: {', '.join(missing_params)}")
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with cls._lock:
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instance_key = (host, port, dbname, user, password, db_root_path, db_mode)
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if instance_key not in cls._instances:
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instance = cls(db_root_path=db_root_path, db_mode=db_mode, **all_params)
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instance.initialize(**all_params)
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cls._instances[instance_key] = instance
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return cls._instances[instance_key]
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def create_adapter(self, **kwargs) -> DbAdapter:
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"""Create and return a MariaDB adapter instance."""
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318
|
+
return MariaDBAdapter(kwargs)
|
319
|
+
|
320
|
+
def validate_connection_params(self, **kwargs) -> bool:
|
321
|
+
"""Validate connection parameters for MariaDB."""
|
322
|
+
required = ['host', 'port', 'user', 'password']
|
323
|
+
database = kwargs.get('database') or kwargs.get('dbname')
|
324
|
+
|
325
|
+
if not database:
|
326
|
+
logger.error("Either 'database' or 'dbname' is required for MariaDB")
|
327
|
+
return False
|
328
|
+
|
329
|
+
for param in required:
|
330
|
+
if param not in kwargs:
|
331
|
+
logger.error(f"Missing required parameter: {param}")
|
332
|
+
return False
|
333
|
+
|
334
|
+
port = kwargs.get('port')
|
335
|
+
if not isinstance(port, int) or not (1 <= port <= 65535):
|
336
|
+
logger.error("port must be an integer between 1 and 65535")
|
337
|
+
return False
|
338
|
+
|
339
|
+
return True
|
340
|
+
|
341
|
+
def initialize(self, **kwargs) -> None:
|
342
|
+
"""Initialize the MariaDB plugin."""
|
343
|
+
# Validate and extract parameters
|
344
|
+
self.host = kwargs.get('host')
|
345
|
+
self.port = kwargs.get('port', 3306)
|
346
|
+
self.dbname = kwargs.get('database') or kwargs.get('dbname')
|
347
|
+
self.user = kwargs.get('user') or kwargs.get('username')
|
348
|
+
self.password = kwargs.get('password')
|
349
|
+
|
350
|
+
# Set additional attributes
|
351
|
+
for key, value in kwargs.items():
|
352
|
+
if key not in ['host', 'port', 'database', 'dbname', 'user', 'username', 'password']:
|
353
|
+
setattr(self, key, value)
|
354
|
+
|
355
|
+
# Initialize with updated kwargs
|
356
|
+
super().initialize(**kwargs)
|
357
|
+
|
358
|
+
# Set up database directory path and ID
|
359
|
+
self.db_id = self.dbname
|
360
|
+
self._setup_directory_path(self.db_id)
|
361
|
+
|
362
|
+
logger.info(f"MariaDB plugin initialized for database: {self.db_id} at {self.host}:{self.port}")
|
363
|
+
|
364
|
+
def _setup_directory_path(self, db_id: str) -> None:
|
365
|
+
"""Set up the database directory path."""
|
366
|
+
if isinstance(self.db_root_path, str):
|
367
|
+
self.db_root_path = Path(self.db_root_path)
|
368
|
+
|
369
|
+
self.db_directory_path = Path(self.db_root_path) / f"{self.db_mode}_databases" / db_id
|
370
|
+
self.db_id = db_id
|
371
|
+
|
372
|
+
# Reset LSH manager when directory path changes
|
373
|
+
self._lsh_manager = None
|
374
|
+
|
375
|
+
@property
|
376
|
+
def lsh_manager(self):
|
377
|
+
"""Lazy load LSH manager for backward compatibility."""
|
378
|
+
if self._lsh_manager is None and self.db_directory_path:
|
379
|
+
from ..lsh.manager import LshManager
|
380
|
+
self._lsh_manager = LshManager(self.db_directory_path)
|
381
|
+
return self._lsh_manager
|
382
|
+
|
383
|
+
# LSH integration methods for backward compatibility
|
384
|
+
def set_lsh(self) -> str:
|
385
|
+
"""Set LSH for backward compatibility."""
|
386
|
+
try:
|
387
|
+
if self.lsh_manager and self.lsh_manager.load_lsh():
|
388
|
+
return "success"
|
389
|
+
else:
|
390
|
+
return "error"
|
391
|
+
except Exception as e:
|
392
|
+
logger.error(f"Error loading LSH: {e}")
|
393
|
+
return "error"
|
394
|
+
|
395
|
+
def query_lsh(self, keyword: str, signature_size: int = 30, n_gram: int = 3, top_n: int = 10) -> Dict[str, Dict[str, List[str]]]:
|
396
|
+
"""Query LSH for backward compatibility."""
|
397
|
+
if self.lsh_manager:
|
398
|
+
try:
|
399
|
+
return self.lsh_manager.query(
|
400
|
+
keyword=keyword,
|
401
|
+
signature_size=signature_size,
|
402
|
+
n_gram=n_gram,
|
403
|
+
top_n=top_n
|
404
|
+
)
|
405
|
+
except Exception as e:
|
406
|
+
logger.error(f"LSH query failed: {e}")
|
407
|
+
raise Exception(f"Error querying LSH for {self.db_id}: {e}")
|
408
|
+
else:
|
409
|
+
raise Exception(f"LSH not available for {self.db_id}")
|
410
|
+
|
411
|
+
def get_connection_info(self) -> Dict[str, Any]:
|
412
|
+
"""Get connection information."""
|
413
|
+
base_info = super().get_plugin_info()
|
414
|
+
|
415
|
+
if self.adapter:
|
416
|
+
adapter_info = self.adapter.get_connection_info()
|
417
|
+
base_info.update(adapter_info)
|
418
|
+
|
419
|
+
base_info.update({
|
420
|
+
"db_id": self.db_id,
|
421
|
+
"host": self.host,
|
422
|
+
"port": self.port,
|
423
|
+
"database": self.dbname,
|
424
|
+
"user": self.user,
|
425
|
+
"db_directory_path": str(self.db_directory_path) if self.db_directory_path else None,
|
426
|
+
"lsh_available": self.lsh_manager is not None
|
427
|
+
})
|
428
|
+
|
429
|
+
return base_info
|
430
|
+
|
431
|
+
def get_example_data(self, table_name: str, number_of_rows: int = 30) -> Dict[str, List[Any]]:
|
432
|
+
"""Get example data through adapter."""
|
433
|
+
if self.adapter:
|
434
|
+
return self.adapter.get_example_data(table_name, number_of_rows)
|
435
|
+
else:
|
436
|
+
raise RuntimeError("Plugin not initialized")
|