tgedr-dataops 0.0.37__py3-none-any.whl → 1.0.1__py3-none-any.whl

tgedr/dataops/store/s3_single_partition_parquet.py

@@ -1,102 +0,0 @@
-import logging
-import s3fs
-import logging
-from typing import Any, Dict, List, Optional
-import pandas as pd
-import pyarrow as pa
-
-from tgedr.dataops.store.fs_single_partition_parquet import FsSinglePartitionParquetStore
-from tgedr.dataops.commons.utils_fs import remove_s3_protocol
-
-
-logger = logging.getLogger(__name__)
-
-
-class S3FsSinglePartitionParquetStore(FsSinglePartitionParquetStore):  # pragma: no cover
-    """FsSinglePartitionParquetStore implementation using aws s3 file system"""
-
-    CONFIG_KEY_AWS_ACCESS_KEY_ID: str = "aws_access_key_id"
-    CONFIG_KEY_AWS_SECRET_ACCESS_KEY: str = "aws_secret_access_key"
-    CONFIG_KEY_AWS_SESSION_TOKEN: str = "aws_session_token"
-
-    @property
-    def fs(self):
-        if self._fs is None:
-            if (self._config is not None) and all(
-                element in list(self._config.keys())
-                for element in [
-                    self.CONFIG_KEY_AWS_ACCESS_KEY_ID,
-                    self.CONFIG_KEY_AWS_SECRET_ACCESS_KEY,
-                    self.CONFIG_KEY_AWS_SESSION_TOKEN,
-                ]
-            ):
-                self._fs = s3fs.S3FileSystem(
-                    key=self._config[self.CONFIG_KEY_AWS_ACCESS_KEY_ID],
-                    secret=self._config[self.CONFIG_KEY_AWS_SECRET_ACCESS_KEY],
-                    token=self._config[self.CONFIG_KEY_AWS_SESSION_TOKEN],
-                )
-            else:
-                self._fs = s3fs.S3FileSystem()
-        return self._fs
-
-    def _rmdir(self, key):
-        if self.fs.isdir(key):
-            self.fs.delete(key, recursive=True)
-
-    def _exists(self, key) -> bool:
-        return self.fs.get_file_info(key).type.name != "NotFound"
-
-    def get(
-        self,
-        key: str,
-        filter: callable = None,
-        filters: List[tuple[str, str, List[str]]] = None,
-        schema: pa.Schema = None,
-    ) -> pd.DataFrame:
-        return super().get(key=remove_s3_protocol(key), filter=filter, filters=filters, schema=schema)
-
-    def delete(
-        self,
-        key: str,
-        partition_field: Optional[str] = None,
-        partition_values: Optional[List[str]] = None,
-        kv_dict: Optional[Dict[str, List[Any]]] = None,
-        schema: pa.Schema = None,
-    ):
-        super().delete(
-            key=remove_s3_protocol(key),
-            partition_field=partition_field,
-            partition_values=partition_values,
-            kv_dict=kv_dict,
-            schema=schema,
-        )
-
-    def save(
-        self,
-        df: pd.DataFrame,
-        key: str,
-        partition_field: Optional[str] = None,
-        append: bool = False,
-        replace_partitions: bool = False,
-        schema: Any = None,
-    ):
-        super().save(
-            df=df,
-            key=remove_s3_protocol(key),
-            partition_field=partition_field,
-            append=append,
-            replace_partitions=replace_partitions,
-            schema=schema,
-        )
-
-    def update(
-        self,
-        df: pd.DataFrame,
-        key: str,
-        key_fields: List[str],
-        partition_field: Optional[str] = None,
-        schema: Any = None,
-    ):
-        super().update(
-            df=df, key=remove_s3_protocol(key), key_fields=key_fields, partition_field=partition_field, schema=schema
-        )

tgedr/dataops/store/spark_delta.py

@@ -1,369 +0,0 @@
-from abc import ABC
-import dataclasses
-import logging
-from typing import Any, Dict, List, Optional, Union
-from datetime import datetime
-from pyspark.sql import DataFrame
-from delta.tables import DeltaTable
-from pyspark.sql import functions as F
-from pyspark.sql import types as T
-from pyspark.sql.utils import AnalysisException
-from pyspark.sql.functions import monotonically_increasing_id
-from tgedr.dataops.store.store import NoStoreException, Store, StoreException
-from tgedr.dataops.commons.metadata import Metadata
-from tgedr.dataops.commons.utils_spark import UtilsSpark
-
-logger = logging.getLogger(__name__)
-
-
-class SparkDeltaStore(Store, ABC):
-    def __init__(self, config: Optional[Dict[str, Any]] = None):
-        Store.__init__(self, config)
-
-    def get(self, key: str, version: str = None, **kwargs) -> DataFrame:
-        logger.info(f"[get|in] ({key}, {version})")
-
-        table = self._get_table(path=key)
-        if table is None:
-            raise NoStoreException(f"[get] couldn't find data in key: {key}")
-
-        reader = UtilsSpark.get_spark_session().read.format("delta")
-        if version is not None:
-            reader = reader.option("versionAsOf", version)
-
-        result = reader.load(key)
-
-        logger.info("[get_df|out]")
-        return result
-
-    def __get_deletion_criteria(self, df):
-        logger.debug("[__get_deletion_criteria|in])")
-        fields = df.dtypes
-        numerics = [
-            x
-            for x in fields
-            if x[1] in ["bigint", "int", "double", "float", "long", "decimal.Decimal"] or (x[1][:7]) == "decimal"
-        ]
-        dates = [x for x in fields if (x[1]) in ["datetime", "datetime.datetime"]]
-        textuals = [x for x in fields if x[1] in ["string"]]
-        if 0 < len(numerics):
-            column = numerics[0][0]
-            result = (F.col(column) > 0) | (F.col(column) <= 0)
-        elif 0 < len(dates):
-            column = dates[0][0]
-            now = datetime.now()
-            result = (F.col(column) > now) | (F.col(column) <= now)
-        elif 0 < len(textuals):
-            column = textuals[0][0]
-            result = (F.col(column) > "a") | (F.col(column) <= "a")
-        else:
-            raise StoreException(
-                f"[__get_deletion_criteria] failed to figure out column types handy to create a full deletion criteria"
-            )
-
-        logger.debug(f"[__get_deletion_criteria|out] = {result}")
-        return result
-
-    def delete(self, key: str, condition: Union[F.Column, str, None] = None, **kwargs) -> None:
-        logger.info(f"[delete|in] ({key}, {condition})")
-
-        spark = UtilsSpark.get_spark_session()
-        """
-        is_s3_operation = True if key.startswith("s3") else False
-        if is_s3_operation:
-        """
-        delta_table = DeltaTable.forPath(spark, key)
-        if condition is None:
-            condition = self.__get_deletion_criteria(delta_table.toDF())
-        delta_table.delete(condition=condition)
-        """
-        else:   # local development mostly for temporary or test purposes
-            spark_fs = spark._jvm.org.apache.hadoop.fs.FileSystem.get(spark._jsc.hadoopConfiguration())
-            # get spark context path
-            spark_path = spark._jvm.org.apache.hadoop.fs.Path(key)
-            logger.info(f"[delete] spark path is {spark_path}")
-            try:
-                if spark_fs.exists(spark_path):
-                    spark_fs.delete(spark_path, True)
-            except AnalysisException as x:
-                raise StoreException(f"[delete] couldn't do it on key {key}: {x}")
-        """
-        logger.info("[delete|out]")
-
-    def save(
-        self,
-        df: DataFrame,
-        key: str,
-        append: bool = False,
-        partition_fields: Optional[List[str]] = None,
-        metadata: Optional[Metadata] = None,
-        retention_days: int = 7,
-        deleted_retention_days: int = 7,
-        column_descriptions: Optional[Dict[str, str]] = None,
-        table_name: Optional[str] = None,
-        **kwargs,
-    ):
-        logger.info(
-            f"[save|in] ({df}, {key}, {append}, {partition_fields}, {metadata}, {retention_days}, {deleted_retention_days}, {column_descriptions}, {table_name}, {kwargs})"
-        )
-
-        if column_descriptions is not None:
-            df = self._set_column_descriptions(df, column_descriptions)
-
-        if append:
-            writer = df.write.format("delta").mode("append")
-        else:
-            writer = df.write.format("delta").mode("overwrite")
-
-        if partition_fields is not None:
-            table = self._get_table(path=key)
-            if table is not None:
-                self._set_table_partitions(path=key, partition_fields=partition_fields)
-            writer = writer.partitionBy(*partition_fields)
-
-        if self._has_schema_changed(path=key, df=df):
-            writer = writer.option("overwriteSchema", "true")
-
-        if metadata:
-            writer = writer.option("userMetadata", metadata)
-
-        if table_name is not None:
-            # assume we have db.table
-            db = table_name.split(".")[0]
-            UtilsSpark.get_spark_session().sql(f"CREATE DATABASE IF NOT EXISTS {db}")
-            writer = writer.option("path", key).saveAsTable(table_name)
-        else:
-            writer.save(key)
-
-        logger.info(f"[save] optimizing...")
-        table = self._get_table(path=key)
-
-        if retention_days is not None and deleted_retention_days is not None:
-            self.enforce_retention_policy(
-                path=key, retention_days=retention_days, deleted_retention_days=deleted_retention_days
-            )
-        elif retention_days is not None:
-            self.enforce_retention_policy(path=key, retention_days=retention_days)
-
-        table.optimize().executeCompaction()
-
-        logger.info(f"[save|out]")
-
-    def update(
-        self,
-        df: Any,
-        key: str,
-        match_fields: List[str],
-        partition_fields: Optional[List[str]] = None,
-        metadata: Optional[Metadata] = None,
-        retention_days: int = 7,
-        deleted_retention_days: int = 7,
-        **kwargs,
-    ):
-        logger.info(
-            f"[update|in] ({df}, {key}, {match_fields}, {partition_fields}, {metadata}, {retention_days}, {deleted_retention_days}, {kwargs})"
-        )
-
-        table = self._get_table(path=key)
-        if table is None:
-            self.save(
-                df=df,
-                key=key,
-                partition_fields=partition_fields,
-                metadata=metadata,
-                retention_days=retention_days,
-                deleted_retention_days=deleted_retention_days,
-                **kwargs,
-            )
-        else:
-            if partition_fields is not None:
-                self._set_table_partitions(path=key, partition_fields=partition_fields)
-
-            match_clause = None
-            for field in match_fields:
-                match_clause = (
-                    f"current.{field} = updates.{field}"
-                    if match_clause is None
-                    else f"{match_clause} and current.{field} = updates.{field}"
-                )
-            logger.info(f"[update] match clause: {match_clause}")
-
-            # check if the df has all the required columns
-            # as we are upserting the updated columns coming in must at least match or exceed the current columns
-            for column in table.toDF().columns:
-                # we'll assume missing columns are nullable, typically metrics
-                if column not in df.columns:
-                    df = df.withColumn(column, F.lit(None).cast(T.StringType()))
-
-            table.alias("current").merge(
-                df.alias("updates"), match_clause
-            ).whenMatchedUpdateAll().whenNotMatchedInsertAll().execute()
-
-            if retention_days is not None and deleted_retention_days is not None:
-                self.enforce_retention_policy(
-                    path=key, retention_days=retention_days, deleted_retention_days=deleted_retention_days
-                )
-            elif retention_days is not None:
-                self.enforce_retention_policy(path=key, retention_days=retention_days)
-
-            table.optimize().executeCompaction()
-
-        logger.info("[UtilsDeltaTable.upsert|out]")
-
-    def enforce_retention_policy(self, path: str, retention_days: int = 7, deleted_retention_days: int = 7):
-        logger.info(f"[enforce_retention_policy|in] ({path}, {retention_days}, {deleted_retention_days})")
-
-        retention = f"interval {retention_days} days"
-        deleted_retention = f"interval {deleted_retention_days} days"
-
-        UtilsSpark.get_spark_session().sql(
-            f"ALTER TABLE delta.`{path}` SET TBLPROPERTIES('delta.logRetentionDuration' = '{retention}', 'delta.deletedFileRetentionDuration' = '{deleted_retention}')"
-        )
-        logger.info("[enforce_retention_policy|out]")
-
-    def get_latest_table_versions(self, path: str, how_many: int = 1) -> List[str]:
-        """
-        checks the delta table history and retrieves the latest n versions
-        sorted from the newest to the oldest
-        """
-        logger.info(f"[get_latest_table_versions|in] ({path}, {how_many})")
-        result: List[str] = []
-
-        table = self._get_table(path=path)
-        if table is not None:
-            history_rows = table.history().orderBy(F.desc("timestamp")).limit(how_many)
-            result = [str(x.version) for x in history_rows.collect()]
-
-        logger.info(f"[get_latest_table_versions|out] => {result}")
-        return result
-
-    def get_metadata(self, path: str, version: str = None) -> Optional[Metadata]:
-        """
-        Raises
-        ------
-        NoStoreException
-        """
-        logger.info(f"[get_metadata|in] ({path}, {version})")
-        table = self._get_table(path)
-        if table is None:
-            raise NoStoreException(f"[get_metadata] no data in path: {path}")
-
-        result = None
-
-        df_history = table.history().filter(F.col("userMetadata").isNotNull())
-        if version is not None:
-            df_history = df_history.filter(F.col("version") <= int(version))
-
-        df_history = df_history.orderBy(F.col("version").desc())
-        if not df_history.isEmpty():
-            userMetadata = df_history.take(1)[0].userMetadata
-            result = Metadata.from_str(userMetadata)
-            if version is not None:
-                result = dataclasses.replace(result, version=version)
-
-        logger.info(f"[get_metadata|out] => ({result})")
-        return result
-
-    def _get_delta_log(self, path: str) -> DataFrame:
-        logger.info(f"[_get_delta_log|in] ({path})")
-
-        spark = UtilsSpark.get_spark_session()
-        jdf = (
-            spark._jvm.org.apache.spark.sql.delta.DeltaLog.forTable(spark._jsparkSession, path)
-            .snapshot()
-            .allFiles()
-            .toDF()
-        )
-        result = DataFrame(jdf, spark)
-
-        logger.info(f"[_get_delta_log|out] => {result}")
-        return result
-
-    def _get_table_partitions(self, path: str) -> List[str]:
-        logger.info(f"[_get_table_partitions|in] ({path})")
-        result: List[str] = []
-
-        delta_log: DataFrame = self._get_delta_log(path=path)
-        partition_keys = [
-            x.keys
-            for x in delta_log.select(F.map_keys(F.col("partitionValues")).alias("keys")).distinct().collect()
-            if 0 < len(x)
-        ]
-        if 0 < len(partition_keys):
-            result: List[str] = list({y for y in partition_keys for y in y})
-
-        logger.info(f"[_get_table_partitions|out] => {result}")
-        return result
-
-    def _vacuum_now(self, path: str):
-        logger.info("[_vacuum_now|in]")
-
-        spark = UtilsSpark.get_spark_session()
-        old_conf_value = spark.conf.get("spark.databricks.delta.retentionDurationCheck.enabled")
-        spark.conf.set("spark.databricks.delta.retentionDurationCheck.enabled", "false")
-        DeltaTable.forPath(spark, path).vacuum(0)
-        spark.conf.set("spark.databricks.delta.retentionDurationCheck.enabled", old_conf_value)
-
-        logger.info("[_vacuum_now|out]")
-
-    def _has_schema_changed(self, path: str, df: DataFrame) -> bool:
-        logger.info(f"[_has_schema_changed|in] ({path},{df})")
-        result: bool = False
-        table = self._get_table(path=path)
-        if table is not None:
-            result = table.toDF().schema != df.schema
-        logger.info(f"[_has_schema_changed|out] => {result}")
-        return result
-
-    def _set_table_partitions(self, path: str, partition_fields: List[str]) -> None:
-        logger.info(f"[_set_table_partitions|in] ({path},{partition_fields})")
-
-        spark = UtilsSpark.get_spark_session()
-        # let's check partition_cols
-        current_partition_fields = self._get_table_partitions(path=path)
-        shall_we_repartition = sorted(partition_fields) != sorted(current_partition_fields)
-
-        if shall_we_repartition:
-            logger.info("[_set_table_partitions] going to repartition")
-            new_df = spark.read.format("delta").load(path)
-            new_df.write.format("delta").mode("overwrite").partitionBy(*partition_fields).option(
-                "overwriteSchema", "true"
-            ).save(path)
-            self._vacuum_now(path)
-            logger.info(
-                f"[_set_table_partitions] changed partition cols from {current_partition_fields} to {partition_fields}"
-            )
-        logger.info("[_set_table_partitions|out]")
-
-    def _get_table(self, path) -> Optional[DeltaTable]:
-        logger.debug(f"[_get_table|in] ({path})")
-        result: DeltaTable = None
-        try:
-            result: DeltaTable = DeltaTable.forPath(UtilsSpark.get_spark_session(), path)
-        except AnalysisException as ax:
-            logger.warning(f"[_get_table] couldn't load from {path}: {ax}")
-
-        logger.debug(f"[_get_table|out] => {result}")
-        return result
-
-    def set_column_comments(self, db: str, table: str, col_comments: Dict[str, str]) -> None:
-        logger.info(f"[set_column_comments|in] ({db}, {table}, {col_comments})")
-        spark = UtilsSpark.get_spark_session()
-
-        table_description: DataFrame = spark.sql(f"describe {db}.{table}").withColumn(
-            "set_column_comments_id", monotonically_increasing_id()
-        )
-        id = table_description.filter(F.col("col_name") == "# Partitioning").collect()[0].set_column_comments_id
-        table_description = table_description.filter(
-            (F.col("set_column_comments_id") < F.lit(id)) & (F.col("col_name") != "")
-        ).drop("set_column_comments_id")
-        rows = [r.asDict() for r in table_description.collect()]
-        for row in rows:
-            col = row["col_name"]
-            data_type = row["data_type"]
-            if col in col_comments:
-                new_comment = col_comments[col]
-                logger.info(f"[set_column_comments] setting new comment ({new_comment}) to column {col}")
-                spark.sql(f"ALTER TABLE {db}.{table} CHANGE COLUMN {col} {col} {data_type} COMMENT '{new_comment}'")
-
-        logger.info("[set_column_comments|out]")

tgedr/dataops/store/store.py

@@ -1,49 +0,0 @@
-import abc
-from typing import Any, Dict, Optional
-
-
-class StoreException(Exception):
-    pass
-
-
-class NoStoreException(StoreException):
-    pass
-
-
-class StoreInterface(metaclass=abc.ABCMeta):
-    @classmethod
-    def __subclasshook__(cls, subclass):
-        return (
-            hasattr(subclass, "get")
-            and callable(subclass.get)
-            and hasattr(subclass, "delete")
-            and callable(subclass.delete)
-            and hasattr(subclass, "save")
-            and callable(subclass.save)
-            and hasattr(subclass, "update")
-            and callable(subclass.update)
-        ) or NotImplemented
-
-
-@StoreInterface.register
-class Store(abc.ABC):
-    """abstract class used to manage persistence, defining CRUD-like (CreateReadUpdateDelete) methods"""
-
-    def __init__(self, config: Optional[Dict[str, Any]] = None):
-        self._config = config
-
-    @abc.abstractmethod
-    def get(self, key: str, **kwargs) -> Any:
-        raise NotImplementedError()
-
-    @abc.abstractmethod
-    def delete(self, key: str, **kwargs) -> None:
-        raise NotImplementedError()
-
-    @abc.abstractmethod
-    def save(self, df: Any, key: str, **kwargs):
-        raise NotImplementedError()
-
-    @abc.abstractmethod
-    def update(self, df: Any, key: str, **kwargs):
-        raise NotImplementedError()

tgedr/dataops/utils_reflection.py

@@ -1,134 +0,0 @@
-import importlib
-import inspect
-import logging
-import os
-import sys
-from importlib import import_module
-from typing import Dict, Any, List
-
-
-logger = logging.getLogger(__name__)
-
-
-class UtilsReflectionException(Exception):
-    pass
-
-
-class UtilsReflection:
-    __MODULE_EXTENSIONS = (".py", ".pyc", ".pyo")
-
-    @staticmethod
-    def load_class(clazz: str, parent_check: type = None) -> Any:
-        logger.debug(f"[load_class|in] (clazz={clazz}, parent_check={parent_check})")
-        type_elements = clazz.split(".")
-        module = ".".join(type_elements[:-1])
-        _clazz = type_elements[-1]
-
-        result = getattr(import_module(module), _clazz)
-
-        if not callable(result):
-            raise TypeError(f"Object {_clazz} in {module} is not callable.")
-
-        if parent_check and (not issubclass(result, parent_check)):
-            raise TypeError(f"Wrong class type, it is not a subclass of {parent_check.__name__}")
-
-        logger.debug(f"[load_class|out] => {result}")
-        return result
-
-    @staticmethod
-    def load_subclass_from_module(module: str, clazz: str, super_clazz: type) -> Any:
-        logger.info(f"[load_subclass_from_module|in] (module={module}, clazz={clazz}, super_clazz={super_clazz})")
-        result = getattr(import_module(module), clazz)
-
-        if not callable(result):
-            raise TypeError(f"Object {clazz} in {module} is not callable.")
-
-        if super_clazz and (not issubclass(result, super_clazz)):
-            raise TypeError(f"Wrong class type, it is not a subclass of {super_clazz.__name__}")
-
-        logger.info(f"[load_subclass_from_module|out] => {result}")
-        return result
-
-    @staticmethod
-    def get_type(module: str, _type: str) -> type:
-        logger.info(f"[get_type|in] (module={module}, _type={_type})")
-        result = None
-
-        result = getattr(import_module(module), _type)
-
-        logger.info(f"[get_type|out] => {result}")
-        return result
-
-    @staticmethod
-    def is_subclass_of(sub_class: type, super_class: type) -> bool:
-        logger.info(f"[is_subclass_of|in] ({sub_class}, {super_class})")
-        result = False
-
-        if callable(sub_class) and issubclass(sub_class, super_class):
-            result = True
-
-        logger.info(f"[is_subclass_of|out] => {result}")
-        return result
-
-    @staticmethod
-    def find_module_classes(module: str) -> List[Any]:
-        logger.info(f"[find_module_classes|in] ({module})")
-        result = []
-        for name, obj in inspect.getmembers(sys.modules[module]):
-            if inspect.isclass(obj):
-                result.append(obj)
-        logger.info(f"[find_module_classes|out] => {result}")
-        return result
-
-    @staticmethod
-    def find_class_implementations_in_package(package_name: str, super_class: type) -> Dict[str, type]:
-        logger.info(f"[find_class_implementations_in_package|in] ({package_name}, {super_class})")
-        result = {}
-
-        the_package = importlib.import_module(package_name)
-        pkg_path = the_package.__path__[0]
-        modules = [
-            package_name + "." + module.split(".")[0]
-            for module in os.listdir(pkg_path)
-            if module.endswith(UtilsReflection.__MODULE_EXTENSIONS) and module != "__init__.py"
-        ]
-
-        logger.info(f"[find_class_implementations_in_package] found modules: {modules}")
-
-        for _module in modules:
-            if _module not in sys.modules:
-                importlib.import_module(_module)
-
-            for _class in UtilsReflection.find_module_classes(_module):
-                if UtilsReflection.is_subclass_of(_class, super_class) and _class != super_class:
-                    result[_module] = _class
-
-        logger.info(f"[find_class_implementations_in_package|out] => {result}")
-        return result
-
-    @staticmethod
-    def find_package_path(package_name: str) -> str:
-        logger.info(f"[find_package_path|in] ({package_name})")
-        the_package = importlib.import_module(package_name)
-        result = the_package.__path__[0]
-        logger.info(f"[find_package_path|out] => {result}")
-        return result
-
-    @staticmethod
-    def find_class_implementations(packages: str, clazz: Any) -> Dict[str, Any]:
-        """
-        throws UtilsReflectionException
-        """
-        logger.info(f"[find_class_implementations|in] ({packages}, {clazz})")
-        result = {}
-        _packages = [a.strip() for a in packages.split(",")]
-
-        # find classes that extend clazz
-        for pack_name in _packages:
-            module_class_map = UtilsReflection.find_class_implementations_in_package(pack_name, clazz)
-            for mod, _clazz in module_class_map.items():
-                impl = mod.split(".")[-1]
-                result[impl] = _clazz
-
-        logger.info(f"[find_class_implementations|out] => {result}")
-        return result