tapps-agents 3.5.39__py3-none-any.whl → 3.5.41__py3-none-any.whl

tapps_agents/core/config.py

@@ -1,1622 +1,1622 @@
-"""
-Configuration management for TappsCodingAgents.
-
-Provides Pydantic models for type-safe configuration and YAML loading.
-"""
-
-from pathlib import Path
-from typing import Any
-
-import yaml
-from pydantic import BaseModel, Field, model_validator
-
-
-class ScoringWeightsConfig(BaseModel):
-    """Configuration for code scoring weights (must sum to 1.0). 7-category: Structure, DevEx added (MCP_SYSTEMS_IMPROVEMENT_RECOMMENDATIONS §3.2)."""
-
-    complexity: float = Field(
-        default=0.18, ge=0.0, le=1.0, description="Weight for complexity score"
-    )
-    security: float = Field(
-        default=0.27, ge=0.0, le=1.0, description="Weight for security score"
-    )
-    maintainability: float = Field(
-        default=0.24, ge=0.0, le=1.0, description="Weight for maintainability score"
-    )
-    test_coverage: float = Field(
-        default=0.13, ge=0.0, le=1.0, description="Weight for test coverage score"
-    )
-    performance: float = Field(
-        default=0.08, ge=0.0, le=1.0, description="Weight for performance score"
-    )
-    structure: float = Field(
-        default=0.05, ge=0.0, le=1.0, description="Weight for structure score (project layout, key files)"
-    )
-    devex: float = Field(
-        default=0.05, ge=0.0, le=1.0, description="Weight for developer experience score (docs, config, tooling)"
-    )
-
-    @model_validator(mode="after")
-    def validate_weights_sum(self):
-        """Ensure weights sum to approximately 1.0"""
-        total = (
-            self.complexity
-            + self.security
-            + self.maintainability
-            + self.test_coverage
-            + self.performance
-            + self.structure
-            + self.devex
-        )
-        if abs(total - 1.0) > 0.01:  # Allow small floating point errors
-            raise ValueError(f"Scoring weights must sum to 1.0, got {total}")
-        return self
-
-
-class TestCoverageConfig(BaseModel):
-    """Test coverage configuration for quality gates."""
-
-    enabled: bool = Field(default=True, description="Enable test coverage checks")
-    threshold: float = Field(
-        default=0.8, ge=0.0, le=1.0, description="Minimum coverage threshold (0.0-1.0)"
-    )
-    critical_services_threshold: float = Field(
-        default=0.8,
-        ge=0.0,
-        le=1.0,
-        description="Minimum coverage for critical services (0.0-1.0)",
-    )
-    warning_threshold: float = Field(
-        default=0.6,
-        ge=0.0,
-        le=1.0,
-        description="Coverage threshold for warnings (0.0-1.0)",
-    )
-
-
-class QualityGatesConfig(BaseModel):
-    """Quality gates configuration."""
-
-    enabled: bool = Field(default=True, description="Enable quality gates")
-    test_coverage: TestCoverageConfig = Field(
-        default_factory=TestCoverageConfig, description="Test coverage configuration"
-    )
-
-
-class ScoringConfig(BaseModel):
-    """Configuration for code scoring system"""
-
-    weights: ScoringWeightsConfig = Field(default_factory=ScoringWeightsConfig)
-    quality_threshold: float = Field(
-        default=70.0, ge=0.0, le=100.0, description="Minimum overall score to pass"
-    )
-    quality_gates: QualityGatesConfig = Field(
-        default_factory=QualityGatesConfig, description="Quality gates configuration"
-    )
-
-
-class ReviewerAgentContext7Config(BaseModel):
-    """Context7 configuration for Reviewer Agent"""
-    
-    auto_detect: bool = Field(
-        default=True, description="Enable automatic library detection"
-    )
-    topics: list[str] = Field(
-        default_factory=lambda: ["best-practices", "routing", "api-design"],
-        description="Default topics to fetch for detected libraries"
-    )
-
-
-class ReviewerAgentConfig(BaseModel):
-    """Configuration specific to Reviewer Agent"""
-
-    quality_threshold: float = Field(
-        default=70.0, ge=0.0, le=100.0, description="Minimum score to pass review"
-    )
-    include_scoring: bool = Field(
-        default=True, description="Include code scoring in review"
-    )
-    include_llm_feedback: bool = Field(
-        default=True, description="Include LLM-generated feedback"
-    )
-    max_file_size: int = Field(
-        default=1024 * 1024,
-        ge=1024,
-        description="Maximum file size in bytes (1MB default)",
-    )
-    min_confidence_threshold: float = Field(
-        default=0.8,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-    operation_timeout: float = Field(
-        default=300.0,
-        ge=10.0,
-        description="Timeout in seconds for reviewer operations (default: 5 minutes)",
-    )
-    tool_timeout: float = Field(
-        default=30.0,
-        ge=5.0,
-        description="Timeout in seconds for individual quality tools (default: 30 seconds)",
-    )
-    enable_parallel_tools: bool = Field(
-        default=True,
-        description="Enable parallel execution of quality tools (Ruff, mypy, bandit)",
-    )
-    context7: ReviewerAgentContext7Config = Field(
-        default_factory=ReviewerAgentContext7Config,
-        description="Context7 integration settings for Reviewer Agent"
-    )
-    # NEW: Library detection config
-    auto_library_detection: bool = Field(
-        default=True,
-        description="Automatically detect libraries from code and dependency files"
-    )
-    library_detection_depth: str = Field(
-        default="both",
-        description="What to detect: 'code' (imports only), 'dependencies' (requirements.txt/pyproject.toml), or 'both'"
-    )
-    # NEW: Context7 integration config
-    auto_context7_lookups: bool = Field(
-        default=True,
-        description="Automatically lookup library documentation from Context7"
-    )
-    context7_timeout: int = Field(
-        default=30,
-        ge=1,
-        le=300,
-        description="Timeout for Context7 lookups in seconds"
-    )
-    context7_cache_enabled: bool = Field(
-        default=True,
-        description="Cache Context7 responses to avoid duplicate lookups"
-    )
-    # NEW: Pattern detection config
-    pattern_detection_enabled: bool = Field(
-        default=True,
-        description="Enable domain-specific pattern detection"
-    )
-    pattern_confidence_threshold: float = Field(
-        default=0.5,
-        ge=0.0,
-        le=1.0,
-        description="Minimum confidence to report detected patterns (0.0-1.0)"
-    )
-
-
-class PlannerAgentConfig(BaseModel):
-    """Configuration specific to Planner Agent"""
-
-    stories_dir: str | None = Field(
-        default=None, description="Directory for storing stories (default: stories/)"
-    )
-    default_priority: str = Field(
-        default="medium",
-        description="Default priority for new stories (high/medium/low)",
-    )
-    min_confidence_threshold: float = Field(
-        default=0.6,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class ImplementerAgentContext7Config(BaseModel):
-    """Context7 configuration for Implementer Agent"""
-    
-    auto_detect: bool = Field(
-        default=True, description="Enable automatic library detection"
-    )
-    detect_from_prompt: bool = Field(
-        default=True, description="Detect libraries from prompt/specification text"
-    )
-
-
-class ImplementerAgentConfig(BaseModel):
-    """Configuration specific to Implementer Agent"""
-
-    require_review: bool = Field(
-        default=True, description="Require code review before writing files"
-    )
-    auto_approve_threshold: float = Field(
-        default=80.0, ge=0.0, le=100.0, description="Auto-approve if score >= threshold"
-    )
-    backup_files: bool = Field(
-        default=True, description="Create backup before overwriting existing files"
-    )
-    max_file_size: int = Field(
-        default=10 * 1024 * 1024,
-        ge=1024,
-        description="Maximum file size in bytes (10MB default)",
-    )
-    min_confidence_threshold: float = Field(
-        default=0.7,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-    context7: ImplementerAgentContext7Config = Field(
-        default_factory=ImplementerAgentContext7Config,
-        description="Context7 integration settings for Implementer Agent"
-    )
-
-
-class TesterAgentConfig(BaseModel):
-    """Configuration specific to Tester Agent"""
-
-    test_framework: str = Field(
-        default="pytest", description="Test framework to use (pytest/unittest)"
-    )
-    tests_dir: str | None = Field(
-        default=None, description="Directory for tests (default: tests/)"
-    )
-    coverage_threshold: float = Field(
-        default=80.0, ge=0.0, le=100.0, description="Target test coverage percentage"
-    )
-    auto_write_tests: bool = Field(
-        default=True, description="Automatically write generated tests to files"
-    )
-    min_confidence_threshold: float = Field(
-        default=0.7,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class DebuggerAgentContext7Config(BaseModel):
-    """Context7 configuration for Debugger Agent"""
-    
-    auto_detect: bool = Field(
-        default=True, description="Enable automatic library detection"
-    )
-    detect_from_errors: bool = Field(
-        default=True, description="Detect libraries from error messages and stack traces"
-    )
-
-
-class DebuggerAgentConfig(BaseModel):
-    """Configuration specific to Debugger Agent"""
-
-    include_code_examples: bool = Field(
-        default=True, description="Include code examples in fix suggestions"
-    )
-    max_context_lines: int = Field(
-        default=50,
-        ge=10,
-        le=200,
-        description="Maximum lines of code context to include in analysis",
-    )
-    min_confidence_threshold: float = Field(
-        default=0.7,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-    context7: DebuggerAgentContext7Config = Field(
-        default_factory=DebuggerAgentContext7Config,
-        description="Context7 integration settings for Debugger Agent"
-    )
-
-
-class DocumenterAgentConfig(BaseModel):
-    """Configuration specific to Documenter Agent"""
-
-    docs_dir: str | None = Field(
-        default=None, description="Directory for generated docs (default: docs/)"
-    )
-    include_examples: bool = Field(
-        default=True, description="Include code examples in documentation"
-    )
-    docstring_format: str = Field(
-        default="google", description="Docstring format (google/numpy/sphinx)"
-    )
-    min_confidence_threshold: float = Field(
-        default=0.5,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class Context7KnowledgeBaseConfig(BaseModel):
-    """Configuration for Context7 knowledge base caching"""
-
-    enabled: bool = Field(default=True, description="Enable KB caching")
-    location: str = Field(
-        default=".tapps-agents/kb/context7-cache", description="KB cache directory"
-    )
-    sharding: bool = Field(default=True, description="Enable library-based sharding")
-    indexing: bool = Field(default=True, description="Enable indexing")
-    max_cache_size: str = Field(default="100MB", description="Maximum cache size")
-    hit_rate_threshold: float = Field(
-        default=0.7, ge=0.0, le=1.0, description="Target hit rate threshold"
-    )
-    fuzzy_match_threshold: float = Field(
-        default=0.7, ge=0.0, le=1.0, description="Fuzzy match confidence threshold"
-    )
-
-
-class Context7RefreshConfig(BaseModel):
-    """Configuration for Context7 auto-refresh system"""
-
-    enabled: bool = Field(default=True, description="Enable auto-refresh")
-    default_max_age_days: int = Field(
-        default=30, ge=1, description="Default max age for cache entries (days)"
-    )
-    check_on_access: bool = Field(default=True, description="Check staleness on access")
-    auto_queue: bool = Field(
-        default=True, description="Automatically queue stale entries"
-    )
-    auto_process_on_startup: bool = Field(
-        default=False, description="Process queue on agent startup"
-    )
-
-
-class Context7Config(BaseModel):
-    """Configuration for Context7 integration"""
-
-    enabled: bool = Field(default=True, description="Enable Context7 integration")
-    default_token_limit: int = Field(
-        default=3000, ge=100, description="Default token limit for Context7 docs"
-    )
-    cache_duration: int = Field(
-        default=3600, ge=0, description="Cache duration in seconds"
-    )
-    integration_level: str = Field(
-        default="optional", description="Integration level (mandatory/optional)"
-    )
-    usage_requirement: str | None = Field(
-        default=None, description="Usage requirement description"
-    )
-    bypass_forbidden: bool = Field(
-        default=True, description="Allow bypassing if Context7 unavailable"
-    )
-    # Enhancement: Automatic Context7 detection and fetching
-    auto_detect: bool = Field(
-        default=True, description="Enable automatic library detection from code, prompts, and errors"
-    )
-    auto_fetch: bool = Field(
-        default=True, description="Automatically fetch docs for detected libraries"
-    )
-    proactive_suggestions: bool = Field(
-        default=True, description="Proactively suggest Context7 lookups when library patterns detected"
-    )
-
-    knowledge_base: Context7KnowledgeBaseConfig = Field(
-        default_factory=Context7KnowledgeBaseConfig
-    )
-    refresh: Context7RefreshConfig = Field(default_factory=Context7RefreshConfig)
-
-
-class QualityToolsConfig(BaseModel):
-    """Configuration for quality analysis tools (Phase 6 - 2025 Standards)"""
-
-    # Ruff configuration
-    ruff_enabled: bool = Field(default=True, description="Enable Ruff linting")
-    ruff_config_path: str | None = Field(
-        default=None,
-        description="Path to ruff.toml or pyproject.toml (auto-detected if None)",
-    )
-
-    # mypy configuration
-    mypy_enabled: bool = Field(default=True, description="Enable mypy type checking")
-    mypy_strict: bool = Field(default=False, description="Enable strict mode for mypy")
-    mypy_config_path: str | None = Field(
-        default=None,
-        description="Path to mypy.ini or pyproject.toml (auto-detected if None)",
-    )
-
-    # jscpd configuration
-    jscpd_enabled: bool = Field(
-        default=True, description="Enable jscpd duplication detection"
-    )
-    duplication_threshold: float = Field(
-        default=3.0,
-        ge=0.0,
-        le=100.0,
-        description="Maximum duplication percentage threshold",
-    )
-    min_duplication_lines: int = Field(
-        default=5, ge=3, description="Minimum lines for duplication detection"
-    )
-
-    # TypeScript/JavaScript configuration
-    typescript_enabled: bool = Field(
-        default=True, description="Enable TypeScript/JavaScript support"
-    )
-    eslint_config: str | None = Field(
-        default=None, description="Path to ESLint config file"
-    )
-    tsconfig_path: str | None = Field(default=None, description="Path to tsconfig.json")
-
-    # Dependency security auditing
-    pip_audit_enabled: bool = Field(
-        default=True, description="Enable pip-audit security scanning"
-    )
-    dependency_audit_threshold: str = Field(
-        default="high",
-        description="Minimum severity threshold (low/medium/high/critical)",
-    )
-
-
-class ToolingTargetsConfig(BaseModel):
-    """Pin runtime/tool targets so agents and CI behave deterministically."""
-
-    python: str = Field(
-        default="3.13.3",
-        description="Target Python version for this project (pin exact patch where possible)",
-    )
-    python_requires: str = Field(
-        default=">=3.13",
-        description="PEP 440 requires-python constraint enforced by packaging/CI",
-    )
-    os_targets: list[str] = Field(
-        default_factory=lambda: ["windows", "linux"],
-        description="Primary OS targets (used for setup/doctor guidance)",
-    )
-    node: str | None = Field(
-        default=None,
-        description="Optional Node.js version (only needed if TypeScript/jscpd tooling is enabled)",
-    )
-
-
-class ToolingPolicyConfig(BaseModel):
-    """Policy for how missing/optional tools are handled."""
-
-    external_tools_mode: str = Field(
-        default="soft",
-        description="How to handle missing external tools: soft=warn/skip, hard=fail",
-    )
-    mypy_staged: bool = Field(
-        default=True, description="Stage mypy enforcement module-by-module"
-    )
-    mypy_stage_paths: list[str] = Field(
-        default_factory=lambda: [
-            "tapps_agents/core",
-            "tapps_agents/workflow",
-            "tapps_agents/context7",
-        ],
-        description="Paths enforced by mypy during the staged rollout",
-    )
-
-
-class ToolingConfig(BaseModel):
-    """Canonical tooling/targets configuration (single source of truth)."""
-
-    targets: ToolingTargetsConfig = Field(default_factory=ToolingTargetsConfig)
-    policy: ToolingPolicyConfig = Field(default_factory=ToolingPolicyConfig)
-
-
-class ArchitectAgentConfig(BaseModel):
-    """Configuration specific to Architect Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.75,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class DesignerAgentConfig(BaseModel):
-    """Configuration specific to Designer Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.65,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class OpsAgentConfig(BaseModel):
-    """Configuration specific to Ops Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.75,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class EnhancerAgentConfig(BaseModel):
-    """Configuration specific to Enhancer Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.6,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class AnalystAgentConfig(BaseModel):
-    """Configuration specific to Analyst Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.65,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class OrchestratorAgentConfig(BaseModel):
-    """Configuration specific to Orchestrator Agent"""
-
-    min_confidence_threshold: float = Field(
-        default=0.6,
-        ge=0.0,
-        le=1.0,
-        description="Minimum expert confidence threshold (0.0-1.0)",
-    )
-
-
-class EvaluatorAgentConfig(BaseModel):
-    """Configuration specific to Evaluator Agent"""
-
-    auto_run: bool = Field(
-        default=False,
-        description="Run evaluator automatically at end of workflows (build, full, etc.)"
-    )
-    output_dir: str = Field(
-        default=".tapps-agents/evaluations",
-        description="Directory for evaluation reports"
-    )
-    thresholds: dict[str, float] = Field(
-        default_factory=lambda: {
-            "quality_score": 70.0,
-            "workflow_completion": 0.8,
-        },
-        description="Thresholds for evaluation metrics"
-    )
-
-
-class CleanupAgentConfig(BaseModel):
-    """Configuration specific to Cleanup Agent"""
-
-    dry_run_default: bool = Field(
-        default=True,
-        description="Run in dry-run mode by default (preview changes without executing)"
-    )
-    backup_enabled: bool = Field(
-        default=True,
-        description="Create backups before destructive operations"
-    )
-    interactive_mode: bool = Field(
-        default=True,
-        description="Prompt for confirmation on risky operations"
-    )
-    default_pattern: str = Field(
-        default="*.md",
-        description="Default file pattern for analysis"
-    )
-    age_threshold_days: int = Field(
-        default=90,
-        ge=1,
-        le=365,
-        description="Days threshold for detecting outdated files"
-    )
-    similarity_threshold: float = Field(
-        default=0.8,
-        ge=0.0,
-        le=1.0,
-        description="Content similarity threshold for detecting near-duplicates"
-    )
-    backup_dir: str = Field(
-        default=".cleanup-backups",
-        description="Directory for cleanup backups"
-    )
-
-
-class ExpertConfig(BaseModel):
-    """Configuration for expert consultation system"""
-
-    # Agent-specific confidence thresholds
-    agent_confidence_thresholds: dict[str, float] = Field(
-        default_factory=lambda: {
-            "reviewer": 0.8,
-            "architect": 0.75,
-            "implementer": 0.7,
-            "designer": 0.65,
-            "tester": 0.7,
-            "ops": 0.75,
-            "enhancer": 0.6,
-            "analyst": 0.65,
-            "planner": 0.6,
-            "debugger": 0.7,
-            "documenter": 0.5,
-            "orchestrator": 0.6,
-            "default": 0.7,
-        },
-        description="Agent-specific confidence thresholds (0.0-1.0)",
-    )
-
-    # Confidence calculation weights
-    weight_max_confidence: float = Field(
-        default=0.35, ge=0.0, le=1.0, description="Weight for maximum expert confidence"
-    )
-    weight_agreement: float = Field(
-        default=0.25, ge=0.0, le=1.0, description="Weight for expert agreement level"
-    )
-    weight_rag_quality: float = Field(
-        default=0.2, ge=0.0, le=1.0, description="Weight for RAG knowledge base quality"
-    )
-    weight_domain_relevance: float = Field(
-        default=0.1, ge=0.0, le=1.0, description="Weight for domain relevance"
-    )
-    weight_project_context: float = Field(
-        default=0.1, ge=0.0, le=1.0, description="Weight for project context relevance"
-    )
-
-    # Agreement and similarity thresholds
-    high_agreement_threshold: float = Field(
-        default=0.75,
-        ge=0.0,
-        le=1.0,
-        description="High agreement threshold for expert consensus (0.0-1.0)",
-    )
-    similarity_threshold: float = Field(
-        default=0.6,
-        ge=0.0,
-        le=1.0,
-        description="Similarity threshold for expert response comparison (0.0-1.0)",
-    )
-
-    # RAG (Retrieval-Augmented Generation) parameters
-    rag_max_length: int = Field(
-        default=2000,
-        ge=100,
-        le=10000,
-        description="Maximum length for RAG context retrieval (characters)",
-    )
-    rag_max_results: int = Field(
-        default=8, ge=1, le=20, description="Maximum number of RAG results to retrieve"
-    )
-    rag_default_quality: float = Field(
-        default=0.8,
-        ge=0.0,
-        le=1.0,
-        description="Default RAG quality score when not provided (0.0-1.0)",
-    )
-
-    # Profile confidence threshold
-    profile_confidence_threshold: float = Field(
-        default=0.7,
-        ge=0.0,
-        le=1.0,
-        description="Minimum confidence threshold for including profile values (0.0-1.0)",
-    )
-
-    # Supporting expert weight
-    supporting_expert_weight: float = Field(
-        default=0.15,
-        ge=0.0,
-        le=1.0,
-        description="Approximate weight for supporting experts in agreement calculation",
-    )
-
-    @model_validator(mode="after")
-    def validate_weights_sum(self):
-        """Ensure confidence weights sum to approximately 1.0"""
-        total = (
-            self.weight_max_confidence
-            + self.weight_agreement
-            + self.weight_rag_quality
-            + self.weight_domain_relevance
-            + self.weight_project_context
-        )
-        if abs(total - 1.0) > 0.01:  # Allow small floating point errors
-            raise ValueError(f"Expert confidence weights must sum to 1.0, got {total}")
-        return self
-
-
-class AgentsConfig(BaseModel):
-    """Configuration for all agents"""
-
-    reviewer: ReviewerAgentConfig = Field(default_factory=ReviewerAgentConfig)
-    planner: PlannerAgentConfig = Field(default_factory=PlannerAgentConfig)
-    implementer: ImplementerAgentConfig = Field(default_factory=ImplementerAgentConfig)
-    tester: TesterAgentConfig = Field(default_factory=TesterAgentConfig)
-    debugger: DebuggerAgentConfig = Field(default_factory=DebuggerAgentConfig)
-    documenter: DocumenterAgentConfig = Field(default_factory=DocumenterAgentConfig)
-    architect: ArchitectAgentConfig = Field(default_factory=ArchitectAgentConfig)
-    designer: DesignerAgentConfig = Field(default_factory=DesignerAgentConfig)
-    ops: OpsAgentConfig = Field(default_factory=OpsAgentConfig)
-    enhancer: EnhancerAgentConfig = Field(default_factory=EnhancerAgentConfig)
-    analyst: AnalystAgentConfig = Field(default_factory=AnalystAgentConfig)
-    orchestrator: OrchestratorAgentConfig = Field(
-        default_factory=OrchestratorAgentConfig
-    )
-    evaluator: EvaluatorAgentConfig = Field(default_factory=EvaluatorAgentConfig)
-    cleanup_agent: CleanupAgentConfig = Field(default_factory=CleanupAgentConfig)
-
-
-class CheckpointFrequencyConfig(BaseModel):
-    """Configuration for checkpoint frequency"""
-
-    mode: str = Field(
-        default="every_step",
-        description="Checkpoint frequency mode: every_step, every_n_steps, on_gates, time_based, manual",
-    )
-    interval: int = Field(
-        default=1,
-        ge=1,
-        description="Interval for every_n_steps (step count) or time_based (seconds)",
-    )
-    enabled: bool = Field(
-        default=True,
-        description="Enable checkpointing",
-    )
-
-
-class StateCleanupPolicyConfig(BaseModel):
-    """Configuration for state cleanup policies"""
-
-    enabled: bool = Field(
-        default=True,
-        description="Enable automatic state cleanup",
-    )
-    retention_days: int | None = Field(
-        default=None,
-        ge=1,
-        description="Delete states older than N days (None = no retention limit)",
-    )
-    max_size_mb: int | None = Field(
-        default=None,
-        ge=1,
-        description="Maximum total state size in MB (None = no size limit)",
-    )
-    cleanup_schedule: str = Field(
-        default="daily",
-        description="Cleanup schedule: daily, weekly, monthly, on_startup, manual",
-    )
-    keep_latest: int = Field(
-        default=10,
-        ge=1,
-        description="Always keep the N most recent states",
-    )
-
-
-class StatePersistenceConfig(BaseModel):
-    """Configuration for state persistence and checkpointing"""
-
-    enabled: bool = Field(
-        default=True,
-        description="Enable state persistence",
-    )
-    storage_location: str = Field(
-        default=".tapps-agents/workflow-state",
-        description="Directory for storing workflow state",
-    )
-    format: str = Field(
-        default="json",
-        description="State storage format: json, json_gzip",
-    )
-    compression: bool = Field(
-        default=False,
-        description="Enable compression for state files",
-    )
-    checkpoint: CheckpointFrequencyConfig = Field(
-        default_factory=CheckpointFrequencyConfig,
-        description="Checkpoint frequency configuration",
-    )
-    cleanup: StateCleanupPolicyConfig = Field(
-        default_factory=StateCleanupPolicyConfig,
-        description="State cleanup policy configuration",
-    )
-
-
-class BranchCleanupConfig(BaseModel):
-    """Configuration for Git branch cleanup after workflow execution"""
-
-    enabled: bool = Field(
-        default=True,
-        description="Enable automatic branch cleanup",
-    )
-    delete_branches_on_cleanup: bool = Field(
-        default=True,
-        description="Delete associated Git branches when worktrees are removed",
-    )
-    retention_days: int = Field(
-        default=7,
-        ge=0,
-        description="Number of days to retain branches before cleanup (0 = immediate cleanup)",
-    )
-    auto_cleanup_on_completion: bool = Field(
-        default=True,
-        description="Automatically cleanup branches when workflow step completes",
-    )
-    patterns: dict[str, str] = Field(
-        default_factory=lambda: {
-            "workflow": "workflow/*",
-            "agent": "agent/*",
-        },
-        description="Branch patterns to match for cleanup (wildcards supported)",
-    )
-
-
-class WorkflowDocsCleanupConfig(BaseModel):
-    """Configuration for workflow documentation cleanup"""
-
-    enabled: bool = Field(
-        default=True,
-        description="Enable workflow documentation cleanup",
-    )
-    keep_latest: int = Field(
-        default=5,
-        ge=1,
-        le=100,
-        description="Keep N most recent workflows visible",
-    )
-    retention_days: int = Field(
-        default=30,
-        ge=1,
-        description="Archive workflows older than N days",
-    )
-    archive_enabled: bool = Field(
-        default=True,
-        description="Enable archival of old workflows",
-    )
-    archive_dir: Path = Field(
-        default=Path(".tapps-agents/archives/workflows/"),
-        description="Directory for archived workflows (relative to project root)",
-    )
-    exclude_patterns: list[str] = Field(
-        default_factory=list,
-        description="Workflow IDs or patterns to never archive",
-    )
-
-
-class SessionsCleanupConfig(BaseModel):
-    """Configuration for .tapps-agents/sessions cleanup (enhancer + SessionManager)."""
-
-    keep_latest: int = Field(
-        default=50,
-        ge=1,
-        le=500,
-        description="Keep N most recent enhancer session files",
-    )
-    max_age_days: int = Field(
-        default=30,
-        ge=1,
-        description="Remove enhancer sessions older than N days; also used for SessionManager cleanup (hours = max_age_days * 24)",
-    )
-    auto_cleanup_on_enhance: bool = Field(
-        default=False,
-        description="When True, run sessions cleanup after each enhancer save so the folder does not grow unbounded",
-    )
-
-
-class CleanupConfig(BaseModel):
-    """Configuration for cleanup operations"""
-
-    workflow_docs: WorkflowDocsCleanupConfig = Field(
-        default_factory=WorkflowDocsCleanupConfig,
-        description="Workflow documentation cleanup configuration",
-    )
-    sessions: SessionsCleanupConfig = Field(
-        default_factory=SessionsCleanupConfig,
-        description="Sessions cleanup (enhancer + long-running agent sessions)",
-    )
-
-
-class WorkflowArtifactConfig(BaseModel):
-    """Configuration for workflow artifact paths and naming."""
-    
-    base_dir: str = Field(
-        default="docs/workflows",
-        description="Base directory for workflow artifacts (relative to project root)",
-    )
-    simple_mode_subdir: str = Field(
-        default="simple-mode",
-        description="Subdirectory for Simple Mode workflow artifacts",
-    )
-    auto_detect_existing: bool = Field(
-        default=True,
-        description="Auto-detect existing artifacts and adjust paths to avoid conflicts",
-    )
-    naming_pattern: str = Field(
-        default="{workflow_id}/{step_name}.md",
-        description="Pattern for artifact file naming. Supports: {workflow_id}, {step_name}, {timestamp}, {agent}",
-    )
-    print_paths_on_completion: bool = Field(
-        default=True,
-        description="Print artifact file paths after each step completes",
-    )
-    
-    def get_artifact_dir(self, project_root: str | None = None) -> str:
-        """Get the full artifact directory path."""
-        from pathlib import Path
-        base = Path(project_root) if project_root else Path.cwd()
-        return str(base / self.base_dir / self.simple_mode_subdir)
-
-
-class WorkflowFailureConfig(BaseModel):
-    """On-step-failure behavior: retry, skip, escalate, or fail (plan 3.1)."""
-
-    on_step_fail: str = Field(
-        default="fail",
-        description="Behavior on step failure: 'fail' | 'retry' | 'skip' | 'escalate'.",
-    )
-    retry_count: int = Field(
-        default=1,
-        ge=0,
-        le=10,
-        description="Max retries when on_step_fail=='retry'.",
-    )
-    escalate_to_pause: bool = Field(
-        default=True,
-        description="When on_step_fail is 'escalate' or 'fail', set status to 'paused' (True) or 'failed' (False).",
-    )
-
-
-class WorkflowConfig(BaseModel):
-    """Configuration for workflow execution"""
-
-    failure: WorkflowFailureConfig = Field(
-        default_factory=WorkflowFailureConfig,
-        description="On-step-failure behavior: retry, skip, escalate (plan 3.1).",
-    )
-    polling_interval: float = Field(
-        default=5.0,
-        ge=1.0,
-        description="Seconds between status checks when polling for completion",
-    )
-    timeout_seconds: float = Field(
-        default=3600.0,
-        ge=1.0,
-        description="Maximum time to wait for step completion (seconds)",
-    )
-    duration_threshold_seconds: float = Field(
-        default=30.0,
-        ge=1.0,
-        description="Duration threshold for background agent routing (seconds). Tasks estimated to take longer use background agents.",
-    )
-    state_persistence: StatePersistenceConfig = Field(
-        default_factory=StatePersistenceConfig,
-        description="State persistence and checkpointing configuration",
-    )
-    branch_cleanup: BranchCleanupConfig = Field(
-        default_factory=BranchCleanupConfig,
-        description="Git branch cleanup configuration for workflow worktrees",
-    )
-    artifacts: WorkflowArtifactConfig = Field(
-        default_factory=WorkflowArtifactConfig,
-        description="Artifact paths and naming configuration",
-    )
-    graceful_partial_completion: bool = Field(
-        default=True,
-        description="Save partial results on failure instead of losing all progress",
-    )
-    pre_flight_validation: bool = Field(
-        default=True,
-        description="Run pre-flight validation before workflow execution",
-    )
-
-
-class ContextBudgetConfig(BaseModel):
-    """Context budget when assembling Context7 and expert chunks (plan 3.2)."""
-
-    max_tokens_per_step: int = Field(
-        default=0,
-        ge=0,
-        description="Max tokens per step (0=no hard limit).",
-    )
-    max_chunks_per_step: int = Field(
-        default=50,
-        ge=1,
-        le=500,
-        description="Max chunks when injecting Context7 or expert docs.",
-    )
-    priority: list[str] = Field(
-        default_factory=lambda: ["current_task", "open_files", "recent_changes", "context7", "experts"],
-        description="Priority order when assembling context (for future use).",
-    )
-
-
-class BugFixAgentConfig(BaseModel):
-    """Configuration for Bug Fix Agent."""
-
-    max_iterations: int = Field(
-        default=3,
-        ge=1,
-        le=10,
-        description="Maximum iterations for fix loopback (1-10)",
-    )
-    auto_commit: bool = Field(
-        default=True,
-        description="Automatically commit changes to main branch when quality passes",
-    )
-    quality_thresholds: dict[str, float] = Field(
-        default_factory=lambda: {
-            "overall_min": 7.0,
-            "security_min": 6.5,
-            "maintainability_min": 7.0,
-        },
-        description="Quality thresholds for bug fixes (lower than full SDLC)",
-    )
-    escalation_threshold: int = Field(
-        default=2,
-        ge=1,
-        le=5,
-        description="Escalate to human after N failed iterations (1-5)",
-    )
-    escalation_enabled: bool = Field(
-        default=True,
-        description="Enable human escalation after failed iterations",
-    )
-    pre_commit_security_scan: bool = Field(
-        default=True,
-        description="Run security scan before committing changes",
-    )
-    metrics_enabled: bool = Field(
-        default=True,
-        description="Enable metrics collection for observability",
-    )
-    commit_strategy: str = Field(
-        default="direct_main",
-        description="Commit strategy: 'direct_main' (commit directly) or 'pull_request' (create PR)",
-    )
-    auto_merge_pr: bool = Field(
-        default=False,
-        description="Auto-merge PR if quality gates pass (requires PR workflow)",
-    )
-    require_pr_review: bool = Field(
-        default=False,
-        description="Require human review before merging PR",
-    )
-
-
-class ContinuousBugFixConfig(BaseModel):
-    """Configuration for Continuous Bug Fix feature."""
-
-    max_iterations: int = Field(
-        default=10,
-        ge=1,
-        le=100,
-        description="Maximum loop iterations (1-100)",
-    )
-    commit_strategy: str = Field(
-        default="one-per-bug",
-        description="Commit strategy: 'one-per-bug' (default) or 'batch'",
-    )
-    auto_commit: bool = Field(
-        default=True,
-        description="Automatically commit fixes after bug-fix-agent succeeds",
-    )
-    test_path: str = Field(
-        default="tests/",
-        description="Default test directory or file to run",
-    )
-    skip_patterns: list[str] = Field(
-        default_factory=list,
-        description="Patterns for bugs to skip (not yet implemented)",
-    )
-
-
-class BeadsConfig(BaseModel):
-    """Configuration for Beads (bd) task-tracking integration."""
-
-    enabled: bool = Field(
-        default=True,
-        description="Enable Beads (bd) integration. When false, all beads features are no-ops.",
-    )
-    required: bool = Field(
-        default=False,
-        description="When true, workflows fail if bd is unavailable or .beads not initialized.",
-    )
-    sync_epic: bool = Field(
-        default=True,
-        description="When beads.enabled is true, sync epic to bd (create issues + deps) before *epic run.",
-    )
-    hooks_simple_mode: bool = Field(
-        default=True,
-        description="When beads.enabled is true, create/close bd issues at start/end of *build and *fix.",
-    )
-    hooks_workflow: bool = Field(
-        default=True,
-        description="When beads.enabled is true, create/close a bd issue at start/end of CLI workflow runs.",
-    )
-    hooks_review: bool = Field(
-        default=False,
-        description="When beads.enabled is true, create/close for *review.",
-    )
-    hooks_test: bool = Field(
-        default=False,
-        description="When beads.enabled is true, create/close for *test.",
-    )
-    hooks_refactor: bool = Field(
-        default=False,
-        description="When beads.enabled is true, create/close for *refactor.",
-    )
-
-
-class SimpleModeConfig(BaseModel):
-    """Configuration for Simple Mode."""
-
-    enabled: bool = Field(
-        default=True, description="Enable Simple Mode (intent-based agent orchestration)"
-    )
-    auto_detect: bool = Field(
-        default=True,
-        description="Auto-enable Simple Mode for first-time users",
-    )
-    show_advanced: bool = Field(
-        default=False, description="Show advanced agent-specific options"
-    )
-    natural_language: bool = Field(
-        default=True, description="Enable natural language command parsing"
-    )
-    fast_mode_default: bool = Field(
-        default=False,
-        description="Default to fast mode for Simple Mode workflows (skip documentation steps)",
-    )
-    state_persistence_enabled: bool = Field(
-        default=True,
-        description="Enable workflow state persistence for resume capability",
-    )
-    checkpoint_retention_days: int = Field(
-        default=30,
-        ge=1,
-        description="Days to retain workflow checkpoints",
-    )
-    documentation_organized: bool = Field(
-        default=True,
-        description="Organize documentation by workflow ID",
-    )
-    create_latest_symlink: bool = Field(
-        default=False,
-        description="Create 'latest' symlink to most recent workflow",
-    )
-    context7_refresh_after_planning: bool = Field(
-        default=True,
-        description="After build planning (Step 2), refresh Context7 cache for libraries from the plan. Set false to disable.",
-    )
-    context7_refresh_max_libraries: int = Field(
-        default=10,
-        ge=1,
-        le=50,
-        description="Max number of libraries to warm in post-planning Context7 refresh (limits API use).",
-    )
-    enable_checkpoints: bool = Field(
-        default=True,
-        description="Enable mid-execution workflow checkpoints (Checkpoint 1: After Enhance, Checkpoint 2: After Planning, Checkpoint 3: Quality Gate)",
-    )
-    checkpoint_confidence_threshold: float = Field(
-        default=0.70,
-        ge=0.0,
-        le=1.0,
-        description="Minimum confidence threshold for checkpoint recommendations (0.0-1.0)",
-    )
-
-
-class AutoEnhancementConfig(BaseModel):
-    """Configuration for automatic prompt enhancement"""
-
-    enabled: bool = Field(
-        default=True, description="Enable auto-enhancement globally"
-    )
-    mode: str = Field(
-        default="cursor-skills",
-        description="Enhancement mode: cursor-skills, structured, or smart",
-    )
-    min_prompt_length: int = Field(
-        default=20, description="Minimum prompt length to trigger enhancement"
-    )
-    quality_threshold: float = Field(
-        default=50.0,
-        ge=0.0,
-        le=100.0,
-        description="Quality score below which to enhance",
-    )
-
-    commands: dict[str, dict[str, Any]] = Field(
-        default_factory=lambda: {
-            "implementer": {"enabled": True, "synthesis_mode": "full"},
-            "planner": {"enabled": True, "synthesis_mode": "quick"},
-            "analyst": {"enabled": True, "synthesis_mode": "quick"},
-            "architect": {"enabled": False},  # Off by default to avoid over-use
-            "designer": {"enabled": False},  # Off by default to avoid over-use
-        },
-        description="Per-command enhancement settings",
-    )
-
-
-class EvaluationConfig(BaseModel):
-    """Configuration for Evaluation & Quality Assurance Engine (Tier 1)"""
-
-    enabled: bool = Field(
-        default=True, description="Enable comprehensive evaluation engine"
-    )
-    include_behavioral_validation: bool = Field(
-        default=True, description="Include behavioral correctness validation"
-    )
-    include_spec_compliance: bool = Field(
-        default=True, description="Include specification compliance checking"
-    )
-    include_architectural_checks: bool = Field(
-        default=True, description="Include architectural pattern adherence checking"
-    )
-    issue_severity_thresholds: dict[str, int] = Field(
-        default_factory=lambda: {
-            "critical": 0,  # Hard fail
-            "high": 5,  # Soft fail/loopback
-            "medium": 10,
-            "low": 20,
-        },
-        description="Maximum allowed issues by severity for gate passing",
-    )
-    enable_remediation_loop: bool = Field(
-        default=True, description="Enable automatic remediation loops"
-    )
-    max_remediation_retries: int = Field(
-        default=3, ge=1, le=10, description="Maximum remediation retry attempts"
-    )
-
-
-class PromptLearningConfig(BaseModel):
-    """Configuration for Continual System Prompt Learning (Tier 1)"""
-
-    enabled: bool = Field(
-        default=True, description="Enable prompt learning system"
-    )
-    feedback_collection_enabled: bool = Field(
-        default=True, description="Enable feedback collection from Cursor IDE"
-    )
-    ab_testing_enabled: bool = Field(
-        default=True, description="Enable A/B testing for prompt variations"
-    )
-    auto_optimize_enabled: bool = Field(
-        default=True, description="Enable automatic prompt optimization"
-    )
-    min_samples_for_optimization: int = Field(
-        default=10, ge=5, description="Minimum feedback samples before optimization"
-    )
-    optimization_interval_hours: int = Field(
-        default=24, ge=1, description="Hours between optimization runs"
-    )
-    prompt_version_retention_days: int = Field(
-        default=90, ge=7, description="Days to retain prompt version history"
-    )
-    auto_update_skills: bool = Field(
-        default=False, description="Automatically update Skills with learned prompts"
-    )
-    require_approval_for_updates: bool = Field(
-        default=True, description="Require approval before updating prompts"
-    )
-
-
-class KnowledgeEngineConfig(BaseModel):
-    """Configuration for Knowledge Ecosystem Enhancement (Tier 1)"""
-
-    enabled: bool = Field(
-        default=True, description="Enable always-on knowledge orchestration engine"
-    )
-    auto_detect_domains: bool = Field(
-        default=True, description="Automatically detect project domains"
-    )
-    auto_create_experts: bool = Field(
-        default=True, description="Automatically create project experts"
-    )
-    knowledge_ingestion_enabled: bool = Field(
-        default=True, description="Enable automatic knowledge ingestion"
-    )
-    proactive_consultation: bool = Field(
-        default=True, description="Proactively consult experts before needed"
-    )
-    metrics_tracking_enabled: bool = Field(
-        default=True, description="Enable metrics tracking for knowledge quality"
-    )
-    kb_maintenance_schedule: str = Field(
-        default="weekly", description="KB maintenance schedule: daily, weekly, monthly"
-    )
-    governance_enabled: bool = Field(
-        default=True, description="Enable governance and safety layer"
-    )
-    require_approval_for_writes: bool = Field(
-        default=False, description="Require approval before writing to knowledge base"
-    )
-
-
-class ContextIntelligenceConfig(BaseModel):
-    """Configuration for Context Intelligence Engine (Tier 1)"""
-
-    enabled: bool = Field(
-        default=True, description="Enable context intelligence engine"
-    )
-    dynamic_gathering_enabled: bool = Field(
-        default=True, description="Enable dynamic context gathering"
-    )
-    repository_exploration_enabled: bool = Field(
-        default=True, description="Enable autonomous repository exploration"
-    )
-    pattern_recognition_enabled: bool = Field(
-        default=True, description="Enable pattern recognition and cataloging"
-    )
-    similarity_detection_enabled: bool = Field(
-        default=True, description="Enable similarity detection for code reuse"
-    )
-    historical_analysis_enabled: bool = Field(
-        default=True, description="Enable historical context analysis"
-    )
-    relevance_ranking_enabled: bool = Field(
-        default=True, description="Enable relevance-based context ranking"
-    )
-    token_budget_management_enabled: bool = Field(
-        default=True, description="Enable token budget management"
-    )
-    default_token_budget: int = Field(
-        default=4000, ge=1000, le=16000, description="Default token budget for context"
-    )
-    progressive_loading_enabled: bool = Field(
-        default=True, description="Enable progressive context loading"
-    )
-
-
-class AnalyticsConfig(BaseModel):
-    """Configuration for analytics and dual-write from execution metrics."""
-
-    record_from_execution: bool = Field(
-        default=True,
-        description="When True, also write to .tapps-agents/analytics/ when recording execution metrics (step and workflow). Set False for metrics-only (no analytics).",
-    )
-
-
-class GuardrailConfig(BaseModel):
-    """Security guardrails for subprocess and file writes (plan 2.2)."""
-
-    sandbox_subprocess: bool = Field(
-        default=True,
-        description="When True, never use shell for subprocess; use cwd=project_root.",
-    )
-    allowed_paths_write: list[str] = Field(
-        default_factory=list,
-        description="When non-empty, writes must be under project_root and under one of these prefixes (e.g. src, tests, docs, .tapps-agents). When empty, only under project_root.",
-    )
-
-
-class HumanOversightConfig(BaseModel):
-    """Human-in-the-loop oversight for *build and *full (plan 2.3)."""
-
-    checkpoints_before_steps: list[str] = Field(
-        default_factory=list,
-        description="Step/agent names before which to prompt: e.g. implementer, designer. If --auto, skipped.",
-    )
-    require_diff_review_implementer: bool = Field(
-        default=False,
-        description="Reserved: when implementer supports preview/diff, require review before apply. Not implemented.",
-    )
-    branch_for_agent_changes: bool = Field(
-        default=True,
-        description="For *build and *full: create branch tapps-agents/build-{workflow_id}; merge to main only after human review.",
-    )
-
-
-class ProjectConfig(BaseModel):
-    """Root configuration model for TappsCodingAgents project"""
-
-    # Project metadata
-    project_name: str | None = Field(default=None, description="Project name")
-    version: str | None = Field(default=None, description="Project version")
-
-    # CLI / runtime
-    offline_mode: bool = Field(
-        default=False,
-        description="Use offline mode (no network) when possible for CLI and agents",
-    )
-
-    # Core configuration
-    tooling: ToolingConfig = Field(
-        default_factory=ToolingConfig,
-        description="Canonical runtime/tool targets and policy (used by doctor/CI/agents)",
-    )
-    agents: AgentsConfig = Field(default_factory=AgentsConfig)
-    scoring: ScoringConfig = Field(default_factory=ScoringConfig)
-    expert: ExpertConfig = Field(
-        default_factory=ExpertConfig,
-        description="Expert consultation system configuration",
-    )
-    context7: Context7Config | None = Field(
-        default_factory=Context7Config, description="Context7 integration configuration"
-    )
-    context_budget: ContextBudgetConfig = Field(
-        default_factory=ContextBudgetConfig,
-        description="Context budget: max_chunks for Context7/expert injection; surface cached_at (plan 3.2).",
-    )
-    quality_tools: QualityToolsConfig | None = Field(
-        default_factory=QualityToolsConfig,
-        description="Quality analysis tools configuration (Phase 6)",
-    )
-    workflow: WorkflowConfig = Field(
-        default_factory=WorkflowConfig,
-        description="Workflow execution configuration",
-    )
-    analytics: AnalyticsConfig = Field(
-        default_factory=AnalyticsConfig,
-        description="Analytics and dual-write from execution metrics (health usage, outcomes).",
-    )
-    guardrails: GuardrailConfig = Field(
-        default_factory=GuardrailConfig,
-        description="Security guardrails: subprocess sandbox, path allowlist for writes (plan 2.2).",
-    )
-    human_oversight: HumanOversightConfig = Field(
-        default_factory=HumanOversightConfig,
-        description="Human oversight: step checkpoints, branch-for-agent-changes (plan 2.3). require_diff_review_implementer reserved.",
-    )
-    simple_mode: SimpleModeConfig = Field(
-        default_factory=SimpleModeConfig,
-        description="Simple Mode configuration (intent-based orchestration)",
-    )
-    beads: BeadsConfig = Field(
-        default_factory=BeadsConfig,
-        description="Beads (bd) task-tracking integration. See docs/BEADS_INTEGRATION.md.",
-    )
-    bug_fix_agent: BugFixAgentConfig = Field(
-        default_factory=BugFixAgentConfig,
-        description="Bug Fix Agent configuration (automated bug fixing with auto-commit)",
-    )
-    continuous_bug_fix: ContinuousBugFixConfig = Field(
-        default_factory=ContinuousBugFixConfig,
-        description="Continuous Bug Fix configuration (automated bug finding and fixing loop)",
-    )
-    auto_enhancement: AutoEnhancementConfig = Field(
-        default_factory=AutoEnhancementConfig,
-        description="Automatic prompt enhancement configuration",
-    )
-
-    # Tier 1 Enhancement Configurations
-    evaluation: EvaluationConfig = Field(
-        default_factory=EvaluationConfig,
-        description="Evaluation & Quality Assurance Engine configuration (Tier 1)",
-    )
-    prompt_learning: PromptLearningConfig = Field(
-        default_factory=PromptLearningConfig,
-        description="Continual System Prompt Learning configuration (Tier 1)",
-    )
-    knowledge_engine: KnowledgeEngineConfig = Field(
-        default_factory=KnowledgeEngineConfig,
-        description="Knowledge Ecosystem Enhancement configuration (Tier 1)",
-    )
-    context_intelligence: ContextIntelligenceConfig = Field(
-        default_factory=ContextIntelligenceConfig,
-        description="Context Intelligence Engine configuration (Tier 1)",
-    )
-    cleanup: CleanupConfig = Field(
-        default_factory=CleanupConfig,
-        description="Cleanup operations configuration",
-    )
-
-    model_config = {
-        "extra": "ignore",  # Ignore unknown fields
-        "validate_assignment": True,
-    }
-
-
-def load_config(config_path: Path | None = None) -> ProjectConfig:
-    """
-    Load configuration from YAML file.
-
-    Args:
-        config_path: Path to config.yaml file. If None, looks for `.tapps-agents/config.yaml`
-                    in current directory or parent directories.
-
-    Returns:
-        ProjectConfig instance with loaded values
-
-    Raises:
-        FileNotFoundError: If config file doesn't exist and no defaults available
-        ValueError: If config file is invalid
-    """
-    if config_path is None:
-        # Look for .tapps-agents/config.yaml in current and parent directories
-        current = Path.cwd()
-        for parent in [current] + list(current.parents):
-            candidate = parent / ".tapps-agents" / "config.yaml"
-            if candidate.exists():
-                config_path = candidate
-                break
-
-        if config_path is None:
-            # Return defaults if no config file found
-            return ProjectConfig()
-
-    if not config_path.exists():
-        # Return defaults if file doesn't exist
-        return ProjectConfig()
-
-    try:
-        # Use utf-8-sig to automatically handle UTF-8 BOM (common on Windows)
-        # This prevents YAML parsing failures when files have BOM prefix (\xef\xbb\xbf)
-        with open(config_path, encoding="utf-8-sig") as f:
-            data = yaml.safe_load(f)
-
-        if data is None:
-            # Empty file, return defaults
-            return ProjectConfig()
-
-        # Validate and load config
-        return ProjectConfig(**data)
-    except yaml.YAMLError as e:
-        raise ValueError(f"Invalid YAML in config file {config_path}: {e}") from e
-    except Exception as e:
-        raise ValueError(f"Error loading config from {config_path}: {e}") from e
-
-
-def save_config(config_path: Path, config: ProjectConfig) -> None:
-    """
-    Save configuration to a YAML file.
-
-    Args:
-        config_path: Path to the config file
-        config: ProjectConfig instance to save
-
-    Raises:
-        OSError: If the file cannot be written
-    """
-    config_path.parent.mkdir(parents=True, exist_ok=True)
-
-    # Load existing config to preserve other settings
-    existing_data: dict[str, Any] = {}
-    if config_path.exists():
-        try:
-            # Use utf-8-sig to handle UTF-8 BOM (common on Windows)
-            with open(config_path, encoding="utf-8-sig") as f:
-                existing_data = yaml.safe_load(f) or {}
-        except Exception:
-            # If we can't read existing config, start fresh
-            existing_data = {}
-
-    # Merge with new config (convert to dict, preserving existing values)
-    new_data = config.model_dump(exclude_none=True, mode="json")
-    
-    def deep_merge(existing: dict[str, Any], new: dict[str, Any]) -> dict[str, Any]:
-        """Recursively merge new dict into existing dict."""
-        result = existing.copy()
-        for key, value in new.items():
-            if key in result and isinstance(result[key], dict) and isinstance(value, dict):
-                # Recursively merge nested dictionaries
-                result[key] = deep_merge(result[key], value)
-            else:
-                # Overwrite with new value
-                result[key] = value
-        return result
-    
-    # Deep merge: preserve existing nested values
-    existing_data = deep_merge(existing_data, new_data)
-
-    # Save
-    with open(config_path, "w", encoding="utf-8") as f:
-        yaml.dump(existing_data, f, default_flow_style=False, sort_keys=False, allow_unicode=True)
-
-
-def get_default_config() -> dict[str, Any]:
-    """
-    Get default configuration as a dictionary (for template generation).
-
-    Returns:
-        Dictionary representation of default config with Path objects as strings
-    """
-    config = ProjectConfig()
-    # Use model_dump with mode="json" to serialize Path objects as strings
-    # This is required for YAML serialization (yaml.safe_dump can't handle Path objects)
-    return config.model_dump(exclude_none=True, mode="json")
-
-
-def get_expert_config(config: ProjectConfig | None = None) -> ExpertConfig:
-    """
-    Get expert configuration, loading from file if needed.
-
-    Args:
-        config: Optional ProjectConfig instance. If None, loads from file.
-
-    Returns:
-        ExpertConfig instance
-    """
-    if config is None:
-        config = load_config()
-    return config.expert
+"""
+Configuration management for TappsCodingAgents.
+
+Provides Pydantic models for type-safe configuration and YAML loading.
+"""
+
+from pathlib import Path
+from typing import Any
+
+import yaml
+from pydantic import BaseModel, Field, model_validator
+
+
+class ScoringWeightsConfig(BaseModel):
+    """Configuration for code scoring weights (must sum to 1.0). 7-category: Structure, DevEx added (MCP_SYSTEMS_IMPROVEMENT_RECOMMENDATIONS §3.2)."""
+
+    complexity: float = Field(
+        default=0.18, ge=0.0, le=1.0, description="Weight for complexity score"
+    )
+    security: float = Field(
+        default=0.27, ge=0.0, le=1.0, description="Weight for security score"
+    )
+    maintainability: float = Field(
+        default=0.24, ge=0.0, le=1.0, description="Weight for maintainability score"
+    )
+    test_coverage: float = Field(
+        default=0.13, ge=0.0, le=1.0, description="Weight for test coverage score"
+    )
+    performance: float = Field(
+        default=0.08, ge=0.0, le=1.0, description="Weight for performance score"
+    )
+    structure: float = Field(
+        default=0.05, ge=0.0, le=1.0, description="Weight for structure score (project layout, key files)"
+    )
+    devex: float = Field(
+        default=0.05, ge=0.0, le=1.0, description="Weight for developer experience score (docs, config, tooling)"
+    )
+
+    @model_validator(mode="after")
+    def validate_weights_sum(self):
+        """Ensure weights sum to approximately 1.0"""
+        total = (
+            self.complexity
+            + self.security
+            + self.maintainability
+            + self.test_coverage
+            + self.performance
+            + self.structure
+            + self.devex
+        )
+        if abs(total - 1.0) > 0.01:  # Allow small floating point errors
+            raise ValueError(f"Scoring weights must sum to 1.0, got {total}")
+        return self
+
+
+class TestCoverageConfig(BaseModel):
+    """Test coverage configuration for quality gates."""
+
+    enabled: bool = Field(default=True, description="Enable test coverage checks")
+    threshold: float = Field(
+        default=0.8, ge=0.0, le=1.0, description="Minimum coverage threshold (0.0-1.0)"
+    )
+    critical_services_threshold: float = Field(
+        default=0.8,
+        ge=0.0,
+        le=1.0,
+        description="Minimum coverage for critical services (0.0-1.0)",
+    )
+    warning_threshold: float = Field(
+        default=0.6,
+        ge=0.0,
+        le=1.0,
+        description="Coverage threshold for warnings (0.0-1.0)",
+    )
+
+
+class QualityGatesConfig(BaseModel):
+    """Quality gates configuration."""
+
+    enabled: bool = Field(default=True, description="Enable quality gates")
+    test_coverage: TestCoverageConfig = Field(
+        default_factory=TestCoverageConfig, description="Test coverage configuration"
+    )
+
+
+class ScoringConfig(BaseModel):
+    """Configuration for code scoring system"""
+
+    weights: ScoringWeightsConfig = Field(default_factory=ScoringWeightsConfig)
+    quality_threshold: float = Field(
+        default=70.0, ge=0.0, le=100.0, description="Minimum overall score to pass"
+    )
+    quality_gates: QualityGatesConfig = Field(
+        default_factory=QualityGatesConfig, description="Quality gates configuration"
+    )
+
+
+class ReviewerAgentContext7Config(BaseModel):
+    """Context7 configuration for Reviewer Agent"""
+    
+    auto_detect: bool = Field(
+        default=True, description="Enable automatic library detection"
+    )
+    topics: list[str] = Field(
+        default_factory=lambda: ["best-practices", "routing", "api-design"],
+        description="Default topics to fetch for detected libraries"
+    )
+
+
+class ReviewerAgentConfig(BaseModel):
+    """Configuration specific to Reviewer Agent"""
+
+    quality_threshold: float = Field(
+        default=70.0, ge=0.0, le=100.0, description="Minimum score to pass review"
+    )
+    include_scoring: bool = Field(
+        default=True, description="Include code scoring in review"
+    )
+    include_llm_feedback: bool = Field(
+        default=True, description="Include LLM-generated feedback"
+    )
+    max_file_size: int = Field(
+        default=1024 * 1024,
+        ge=1024,
+        description="Maximum file size in bytes (1MB default)",
+    )
+    min_confidence_threshold: float = Field(
+        default=0.8,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+    operation_timeout: float = Field(
+        default=300.0,
+        ge=10.0,
+        description="Timeout in seconds for reviewer operations (default: 5 minutes)",
+    )
+    tool_timeout: float = Field(
+        default=30.0,
+        ge=5.0,
+        description="Timeout in seconds for individual quality tools (default: 30 seconds)",
+    )
+    enable_parallel_tools: bool = Field(
+        default=True,
+        description="Enable parallel execution of quality tools (Ruff, mypy, bandit)",
+    )
+    context7: ReviewerAgentContext7Config = Field(
+        default_factory=ReviewerAgentContext7Config,
+        description="Context7 integration settings for Reviewer Agent"
+    )
+    # NEW: Library detection config
+    auto_library_detection: bool = Field(
+        default=True,
+        description="Automatically detect libraries from code and dependency files"
+    )
+    library_detection_depth: str = Field(
+        default="both",
+        description="What to detect: 'code' (imports only), 'dependencies' (requirements.txt/pyproject.toml), or 'both'"
+    )
+    # NEW: Context7 integration config
+    auto_context7_lookups: bool = Field(
+        default=True,
+        description="Automatically lookup library documentation from Context7"
+    )
+    context7_timeout: int = Field(
+        default=30,
+        ge=1,
+        le=300,
+        description="Timeout for Context7 lookups in seconds"
+    )
+    context7_cache_enabled: bool = Field(
+        default=True,
+        description="Cache Context7 responses to avoid duplicate lookups"
+    )
+    # NEW: Pattern detection config
+    pattern_detection_enabled: bool = Field(
+        default=True,
+        description="Enable domain-specific pattern detection"
+    )
+    pattern_confidence_threshold: float = Field(
+        default=0.5,
+        ge=0.0,
+        le=1.0,
+        description="Minimum confidence to report detected patterns (0.0-1.0)"
+    )
+
+
+class PlannerAgentConfig(BaseModel):
+    """Configuration specific to Planner Agent"""
+
+    stories_dir: str | None = Field(
+        default=None, description="Directory for storing stories (default: stories/)"
+    )
+    default_priority: str = Field(
+        default="medium",
+        description="Default priority for new stories (high/medium/low)",
+    )
+    min_confidence_threshold: float = Field(
+        default=0.6,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class ImplementerAgentContext7Config(BaseModel):
+    """Context7 configuration for Implementer Agent"""
+    
+    auto_detect: bool = Field(
+        default=True, description="Enable automatic library detection"
+    )
+    detect_from_prompt: bool = Field(
+        default=True, description="Detect libraries from prompt/specification text"
+    )
+
+
+class ImplementerAgentConfig(BaseModel):
+    """Configuration specific to Implementer Agent"""
+
+    require_review: bool = Field(
+        default=True, description="Require code review before writing files"
+    )
+    auto_approve_threshold: float = Field(
+        default=80.0, ge=0.0, le=100.0, description="Auto-approve if score >= threshold"
+    )
+    backup_files: bool = Field(
+        default=True, description="Create backup before overwriting existing files"
+    )
+    max_file_size: int = Field(
+        default=10 * 1024 * 1024,
+        ge=1024,
+        description="Maximum file size in bytes (10MB default)",
+    )
+    min_confidence_threshold: float = Field(
+        default=0.7,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+    context7: ImplementerAgentContext7Config = Field(
+        default_factory=ImplementerAgentContext7Config,
+        description="Context7 integration settings for Implementer Agent"
+    )
+
+
+class TesterAgentConfig(BaseModel):
+    """Configuration specific to Tester Agent"""
+
+    test_framework: str = Field(
+        default="pytest", description="Test framework to use (pytest/unittest)"
+    )
+    tests_dir: str | None = Field(
+        default=None, description="Directory for tests (default: tests/)"
+    )
+    coverage_threshold: float = Field(
+        default=80.0, ge=0.0, le=100.0, description="Target test coverage percentage"
+    )
+    auto_write_tests: bool = Field(
+        default=True, description="Automatically write generated tests to files"
+    )
+    min_confidence_threshold: float = Field(
+        default=0.7,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class DebuggerAgentContext7Config(BaseModel):
+    """Context7 configuration for Debugger Agent"""
+    
+    auto_detect: bool = Field(
+        default=True, description="Enable automatic library detection"
+    )
+    detect_from_errors: bool = Field(
+        default=True, description="Detect libraries from error messages and stack traces"
+    )
+
+
+class DebuggerAgentConfig(BaseModel):
+    """Configuration specific to Debugger Agent"""
+
+    include_code_examples: bool = Field(
+        default=True, description="Include code examples in fix suggestions"
+    )
+    max_context_lines: int = Field(
+        default=50,
+        ge=10,
+        le=200,
+        description="Maximum lines of code context to include in analysis",
+    )
+    min_confidence_threshold: float = Field(
+        default=0.7,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+    context7: DebuggerAgentContext7Config = Field(
+        default_factory=DebuggerAgentContext7Config,
+        description="Context7 integration settings for Debugger Agent"
+    )
+
+
+class DocumenterAgentConfig(BaseModel):
+    """Configuration specific to Documenter Agent"""
+
+    docs_dir: str | None = Field(
+        default=None, description="Directory for generated docs (default: docs/)"
+    )
+    include_examples: bool = Field(
+        default=True, description="Include code examples in documentation"
+    )
+    docstring_format: str = Field(
+        default="google", description="Docstring format (google/numpy/sphinx)"
+    )
+    min_confidence_threshold: float = Field(
+        default=0.5,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class Context7KnowledgeBaseConfig(BaseModel):
+    """Configuration for Context7 knowledge base caching"""
+
+    enabled: bool = Field(default=True, description="Enable KB caching")
+    location: str = Field(
+        default=".tapps-agents/kb/context7-cache", description="KB cache directory"
+    )
+    sharding: bool = Field(default=True, description="Enable library-based sharding")
+    indexing: bool = Field(default=True, description="Enable indexing")
+    max_cache_size: str = Field(default="100MB", description="Maximum cache size")
+    hit_rate_threshold: float = Field(
+        default=0.7, ge=0.0, le=1.0, description="Target hit rate threshold"
+    )
+    fuzzy_match_threshold: float = Field(
+        default=0.7, ge=0.0, le=1.0, description="Fuzzy match confidence threshold"
+    )
+
+
+class Context7RefreshConfig(BaseModel):
+    """Configuration for Context7 auto-refresh system"""
+
+    enabled: bool = Field(default=True, description="Enable auto-refresh")
+    default_max_age_days: int = Field(
+        default=30, ge=1, description="Default max age for cache entries (days)"
+    )
+    check_on_access: bool = Field(default=True, description="Check staleness on access")
+    auto_queue: bool = Field(
+        default=True, description="Automatically queue stale entries"
+    )
+    auto_process_on_startup: bool = Field(
+        default=False, description="Process queue on agent startup"
+    )
+
+
+class Context7Config(BaseModel):
+    """Configuration for Context7 integration"""
+
+    enabled: bool = Field(default=True, description="Enable Context7 integration")
+    default_token_limit: int = Field(
+        default=3000, ge=100, description="Default token limit for Context7 docs"
+    )
+    cache_duration: int = Field(
+        default=3600, ge=0, description="Cache duration in seconds"
+    )
+    integration_level: str = Field(
+        default="optional", description="Integration level (mandatory/optional)"
+    )
+    usage_requirement: str | None = Field(
+        default=None, description="Usage requirement description"
+    )
+    bypass_forbidden: bool = Field(
+        default=True, description="Allow bypassing if Context7 unavailable"
+    )
+    # Enhancement: Automatic Context7 detection and fetching
+    auto_detect: bool = Field(
+        default=True, description="Enable automatic library detection from code, prompts, and errors"
+    )
+    auto_fetch: bool = Field(
+        default=True, description="Automatically fetch docs for detected libraries"
+    )
+    proactive_suggestions: bool = Field(
+        default=True, description="Proactively suggest Context7 lookups when library patterns detected"
+    )
+
+    knowledge_base: Context7KnowledgeBaseConfig = Field(
+        default_factory=Context7KnowledgeBaseConfig
+    )
+    refresh: Context7RefreshConfig = Field(default_factory=Context7RefreshConfig)
+
+
+class QualityToolsConfig(BaseModel):
+    """Configuration for quality analysis tools (Phase 6 - 2025 Standards)"""
+
+    # Ruff configuration
+    ruff_enabled: bool = Field(default=True, description="Enable Ruff linting")
+    ruff_config_path: str | None = Field(
+        default=None,
+        description="Path to ruff.toml or pyproject.toml (auto-detected if None)",
+    )
+
+    # mypy configuration
+    mypy_enabled: bool = Field(default=True, description="Enable mypy type checking")
+    mypy_strict: bool = Field(default=False, description="Enable strict mode for mypy")
+    mypy_config_path: str | None = Field(
+        default=None,
+        description="Path to mypy.ini or pyproject.toml (auto-detected if None)",
+    )
+
+    # jscpd configuration
+    jscpd_enabled: bool = Field(
+        default=True, description="Enable jscpd duplication detection"
+    )
+    duplication_threshold: float = Field(
+        default=3.0,
+        ge=0.0,
+        le=100.0,
+        description="Maximum duplication percentage threshold",
+    )
+    min_duplication_lines: int = Field(
+        default=5, ge=3, description="Minimum lines for duplication detection"
+    )
+
+    # TypeScript/JavaScript configuration
+    typescript_enabled: bool = Field(
+        default=True, description="Enable TypeScript/JavaScript support"
+    )
+    eslint_config: str | None = Field(
+        default=None, description="Path to ESLint config file"
+    )
+    tsconfig_path: str | None = Field(default=None, description="Path to tsconfig.json")
+
+    # Dependency security auditing
+    pip_audit_enabled: bool = Field(
+        default=True, description="Enable pip-audit security scanning"
+    )
+    dependency_audit_threshold: str = Field(
+        default="high",
+        description="Minimum severity threshold (low/medium/high/critical)",
+    )
+
+
+class ToolingTargetsConfig(BaseModel):
+    """Pin runtime/tool targets so agents and CI behave deterministically."""
+
+    python: str = Field(
+        default="3.13.3",
+        description="Target Python version for this project (pin exact patch where possible)",
+    )
+    python_requires: str = Field(
+        default=">=3.13",
+        description="PEP 440 requires-python constraint enforced by packaging/CI",
+    )
+    os_targets: list[str] = Field(
+        default_factory=lambda: ["windows", "linux"],
+        description="Primary OS targets (used for setup/doctor guidance)",
+    )
+    node: str | None = Field(
+        default=None,
+        description="Optional Node.js version (only needed if TypeScript/jscpd tooling is enabled)",
+    )
+
+
+class ToolingPolicyConfig(BaseModel):
+    """Policy for how missing/optional tools are handled."""
+
+    external_tools_mode: str = Field(
+        default="soft",
+        description="How to handle missing external tools: soft=warn/skip, hard=fail",
+    )
+    mypy_staged: bool = Field(
+        default=True, description="Stage mypy enforcement module-by-module"
+    )
+    mypy_stage_paths: list[str] = Field(
+        default_factory=lambda: [
+            "tapps_agents/core",
+            "tapps_agents/workflow",
+            "tapps_agents/context7",
+        ],
+        description="Paths enforced by mypy during the staged rollout",
+    )
+
+
+class ToolingConfig(BaseModel):
+    """Canonical tooling/targets configuration (single source of truth)."""
+
+    targets: ToolingTargetsConfig = Field(default_factory=ToolingTargetsConfig)
+    policy: ToolingPolicyConfig = Field(default_factory=ToolingPolicyConfig)
+
+
+class ArchitectAgentConfig(BaseModel):
+    """Configuration specific to Architect Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.75,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class DesignerAgentConfig(BaseModel):
+    """Configuration specific to Designer Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.65,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class OpsAgentConfig(BaseModel):
+    """Configuration specific to Ops Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.75,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class EnhancerAgentConfig(BaseModel):
+    """Configuration specific to Enhancer Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.6,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class AnalystAgentConfig(BaseModel):
+    """Configuration specific to Analyst Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.65,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class OrchestratorAgentConfig(BaseModel):
+    """Configuration specific to Orchestrator Agent"""
+
+    min_confidence_threshold: float = Field(
+        default=0.6,
+        ge=0.0,
+        le=1.0,
+        description="Minimum expert confidence threshold (0.0-1.0)",
+    )
+
+
+class EvaluatorAgentConfig(BaseModel):
+    """Configuration specific to Evaluator Agent"""
+
+    auto_run: bool = Field(
+        default=False,
+        description="Run evaluator automatically at end of workflows (build, full, etc.)"
+    )
+    output_dir: str = Field(
+        default=".tapps-agents/evaluations",
+        description="Directory for evaluation reports"
+    )
+    thresholds: dict[str, float] = Field(
+        default_factory=lambda: {
+            "quality_score": 70.0,
+            "workflow_completion": 0.8,
+        },
+        description="Thresholds for evaluation metrics"
+    )
+
+
+class CleanupAgentConfig(BaseModel):
+    """Configuration specific to Cleanup Agent"""
+
+    dry_run_default: bool = Field(
+        default=True,
+        description="Run in dry-run mode by default (preview changes without executing)"
+    )
+    backup_enabled: bool = Field(
+        default=True,
+        description="Create backups before destructive operations"
+    )
+    interactive_mode: bool = Field(
+        default=True,
+        description="Prompt for confirmation on risky operations"
+    )
+    default_pattern: str = Field(
+        default="*.md",
+        description="Default file pattern for analysis"
+    )
+    age_threshold_days: int = Field(
+        default=90,
+        ge=1,
+        le=365,
+        description="Days threshold for detecting outdated files"
+    )
+    similarity_threshold: float = Field(
+        default=0.8,
+        ge=0.0,
+        le=1.0,
+        description="Content similarity threshold for detecting near-duplicates"
+    )
+    backup_dir: str = Field(
+        default=".cleanup-backups",
+        description="Directory for cleanup backups"
+    )
+
+
+class ExpertConfig(BaseModel):
+    """Configuration for expert consultation system"""
+
+    # Agent-specific confidence thresholds
+    agent_confidence_thresholds: dict[str, float] = Field(
+        default_factory=lambda: {
+            "reviewer": 0.8,
+            "architect": 0.75,
+            "implementer": 0.7,
+            "designer": 0.65,
+            "tester": 0.7,
+            "ops": 0.75,
+            "enhancer": 0.6,
+            "analyst": 0.65,
+            "planner": 0.6,
+            "debugger": 0.7,
+            "documenter": 0.5,
+            "orchestrator": 0.6,
+            "default": 0.7,
+        },
+        description="Agent-specific confidence thresholds (0.0-1.0)",
+    )
+
+    # Confidence calculation weights
+    weight_max_confidence: float = Field(
+        default=0.35, ge=0.0, le=1.0, description="Weight for maximum expert confidence"
+    )
+    weight_agreement: float = Field(
+        default=0.25, ge=0.0, le=1.0, description="Weight for expert agreement level"
+    )
+    weight_rag_quality: float = Field(
+        default=0.2, ge=0.0, le=1.0, description="Weight for RAG knowledge base quality"
+    )
+    weight_domain_relevance: float = Field(
+        default=0.1, ge=0.0, le=1.0, description="Weight for domain relevance"
+    )
+    weight_project_context: float = Field(
+        default=0.1, ge=0.0, le=1.0, description="Weight for project context relevance"
+    )
+
+    # Agreement and similarity thresholds
+    high_agreement_threshold: float = Field(
+        default=0.75,
+        ge=0.0,
+        le=1.0,
+        description="High agreement threshold for expert consensus (0.0-1.0)",
+    )
+    similarity_threshold: float = Field(
+        default=0.6,
+        ge=0.0,
+        le=1.0,
+        description="Similarity threshold for expert response comparison (0.0-1.0)",
+    )
+
+    # RAG (Retrieval-Augmented Generation) parameters
+    rag_max_length: int = Field(
+        default=2000,
+        ge=100,
+        le=10000,
+        description="Maximum length for RAG context retrieval (characters)",
+    )
+    rag_max_results: int = Field(
+        default=8, ge=1, le=20, description="Maximum number of RAG results to retrieve"
+    )
+    rag_default_quality: float = Field(
+        default=0.8,
+        ge=0.0,
+        le=1.0,
+        description="Default RAG quality score when not provided (0.0-1.0)",
+    )
+
+    # Profile confidence threshold
+    profile_confidence_threshold: float = Field(
+        default=0.7,
+        ge=0.0,
+        le=1.0,
+        description="Minimum confidence threshold for including profile values (0.0-1.0)",
+    )
+
+    # Supporting expert weight
+    supporting_expert_weight: float = Field(
+        default=0.15,
+        ge=0.0,
+        le=1.0,
+        description="Approximate weight for supporting experts in agreement calculation",
+    )
+
+    @model_validator(mode="after")
+    def validate_weights_sum(self):
+        """Ensure confidence weights sum to approximately 1.0"""
+        total = (
+            self.weight_max_confidence
+            + self.weight_agreement
+            + self.weight_rag_quality
+            + self.weight_domain_relevance
+            + self.weight_project_context
+        )
+        if abs(total - 1.0) > 0.01:  # Allow small floating point errors
+            raise ValueError(f"Expert confidence weights must sum to 1.0, got {total}")
+        return self
+
+
+class AgentsConfig(BaseModel):
+    """Configuration for all agents"""
+
+    reviewer: ReviewerAgentConfig = Field(default_factory=ReviewerAgentConfig)
+    planner: PlannerAgentConfig = Field(default_factory=PlannerAgentConfig)
+    implementer: ImplementerAgentConfig = Field(default_factory=ImplementerAgentConfig)
+    tester: TesterAgentConfig = Field(default_factory=TesterAgentConfig)
+    debugger: DebuggerAgentConfig = Field(default_factory=DebuggerAgentConfig)
+    documenter: DocumenterAgentConfig = Field(default_factory=DocumenterAgentConfig)
+    architect: ArchitectAgentConfig = Field(default_factory=ArchitectAgentConfig)
+    designer: DesignerAgentConfig = Field(default_factory=DesignerAgentConfig)
+    ops: OpsAgentConfig = Field(default_factory=OpsAgentConfig)
+    enhancer: EnhancerAgentConfig = Field(default_factory=EnhancerAgentConfig)
+    analyst: AnalystAgentConfig = Field(default_factory=AnalystAgentConfig)
+    orchestrator: OrchestratorAgentConfig = Field(
+        default_factory=OrchestratorAgentConfig
+    )
+    evaluator: EvaluatorAgentConfig = Field(default_factory=EvaluatorAgentConfig)
+    cleanup_agent: CleanupAgentConfig = Field(default_factory=CleanupAgentConfig)
+
+
+class CheckpointFrequencyConfig(BaseModel):
+    """Configuration for checkpoint frequency"""
+
+    mode: str = Field(
+        default="every_step",
+        description="Checkpoint frequency mode: every_step, every_n_steps, on_gates, time_based, manual",
+    )
+    interval: int = Field(
+        default=1,
+        ge=1,
+        description="Interval for every_n_steps (step count) or time_based (seconds)",
+    )
+    enabled: bool = Field(
+        default=True,
+        description="Enable checkpointing",
+    )
+
+
+class StateCleanupPolicyConfig(BaseModel):
+    """Configuration for state cleanup policies"""
+
+    enabled: bool = Field(
+        default=True,
+        description="Enable automatic state cleanup",
+    )
+    retention_days: int | None = Field(
+        default=None,
+        ge=1,
+        description="Delete states older than N days (None = no retention limit)",
+    )
+    max_size_mb: int | None = Field(
+        default=None,
+        ge=1,
+        description="Maximum total state size in MB (None = no size limit)",
+    )
+    cleanup_schedule: str = Field(
+        default="daily",
+        description="Cleanup schedule: daily, weekly, monthly, on_startup, manual",
+    )
+    keep_latest: int = Field(
+        default=10,
+        ge=1,
+        description="Always keep the N most recent states",
+    )
+
+
+class StatePersistenceConfig(BaseModel):
+    """Configuration for state persistence and checkpointing"""
+
+    enabled: bool = Field(
+        default=True,
+        description="Enable state persistence",
+    )
+    storage_location: str = Field(
+        default=".tapps-agents/workflow-state",
+        description="Directory for storing workflow state",
+    )
+    format: str = Field(
+        default="json",
+        description="State storage format: json, json_gzip",
+    )
+    compression: bool = Field(
+        default=False,
+        description="Enable compression for state files",
+    )
+    checkpoint: CheckpointFrequencyConfig = Field(
+        default_factory=CheckpointFrequencyConfig,
+        description="Checkpoint frequency configuration",
+    )
+    cleanup: StateCleanupPolicyConfig = Field(
+        default_factory=StateCleanupPolicyConfig,
+        description="State cleanup policy configuration",
+    )
+
+
+class BranchCleanupConfig(BaseModel):
+    """Configuration for Git branch cleanup after workflow execution"""
+
+    enabled: bool = Field(
+        default=True,
+        description="Enable automatic branch cleanup",
+    )
+    delete_branches_on_cleanup: bool = Field(
+        default=True,
+        description="Delete associated Git branches when worktrees are removed",
+    )
+    retention_days: int = Field(
+        default=7,
+        ge=0,
+        description="Number of days to retain branches before cleanup (0 = immediate cleanup)",
+    )
+    auto_cleanup_on_completion: bool = Field(
+        default=True,
+        description="Automatically cleanup branches when workflow step completes",
+    )
+    patterns: dict[str, str] = Field(
+        default_factory=lambda: {
+            "workflow": "workflow/*",
+            "agent": "agent/*",
+        },
+        description="Branch patterns to match for cleanup (wildcards supported)",
+    )
+
+
+class WorkflowDocsCleanupConfig(BaseModel):
+    """Configuration for workflow documentation cleanup"""
+
+    enabled: bool = Field(
+        default=True,
+        description="Enable workflow documentation cleanup",
+    )
+    keep_latest: int = Field(
+        default=5,
+        ge=1,
+        le=100,
+        description="Keep N most recent workflows visible",
+    )
+    retention_days: int = Field(
+        default=30,
+        ge=1,
+        description="Archive workflows older than N days",
+    )
+    archive_enabled: bool = Field(
+        default=True,
+        description="Enable archival of old workflows",
+    )
+    archive_dir: Path = Field(
+        default=Path(".tapps-agents/archives/workflows/"),
+        description="Directory for archived workflows (relative to project root)",
+    )
+    exclude_patterns: list[str] = Field(
+        default_factory=list,
+        description="Workflow IDs or patterns to never archive",
+    )
+
+
+class SessionsCleanupConfig(BaseModel):
+    """Configuration for .tapps-agents/sessions cleanup (enhancer + SessionManager)."""
+
+    keep_latest: int = Field(
+        default=50,
+        ge=1,
+        le=500,
+        description="Keep N most recent enhancer session files",
+    )
+    max_age_days: int = Field(
+        default=30,
+        ge=1,
+        description="Remove enhancer sessions older than N days; also used for SessionManager cleanup (hours = max_age_days * 24)",
+    )
+    auto_cleanup_on_enhance: bool = Field(
+        default=False,
+        description="When True, run sessions cleanup after each enhancer save so the folder does not grow unbounded",
+    )
+
+
+class CleanupConfig(BaseModel):
+    """Configuration for cleanup operations"""
+
+    workflow_docs: WorkflowDocsCleanupConfig = Field(
+        default_factory=WorkflowDocsCleanupConfig,
+        description="Workflow documentation cleanup configuration",
+    )
+    sessions: SessionsCleanupConfig = Field(
+        default_factory=SessionsCleanupConfig,
+        description="Sessions cleanup (enhancer + long-running agent sessions)",
+    )
+
+
+class WorkflowArtifactConfig(BaseModel):
+    """Configuration for workflow artifact paths and naming."""
+    
+    base_dir: str = Field(
+        default="docs/workflows",
+        description="Base directory for workflow artifacts (relative to project root)",
+    )
+    simple_mode_subdir: str = Field(
+        default="simple-mode",
+        description="Subdirectory for Simple Mode workflow artifacts",
+    )
+    auto_detect_existing: bool = Field(
+        default=True,
+        description="Auto-detect existing artifacts and adjust paths to avoid conflicts",
+    )
+    naming_pattern: str = Field(
+        default="{workflow_id}/{step_name}.md",
+        description="Pattern for artifact file naming. Supports: {workflow_id}, {step_name}, {timestamp}, {agent}",
+    )
+    print_paths_on_completion: bool = Field(
+        default=True,
+        description="Print artifact file paths after each step completes",
+    )
+    
+    def get_artifact_dir(self, project_root: str | None = None) -> str:
+        """Get the full artifact directory path."""
+        from pathlib import Path
+        base = Path(project_root) if project_root else Path.cwd()
+        return str(base / self.base_dir / self.simple_mode_subdir)
+
+
+class WorkflowFailureConfig(BaseModel):
+    """On-step-failure behavior: retry, skip, escalate, or fail (plan 3.1)."""
+
+    on_step_fail: str = Field(
+        default="fail",
+        description="Behavior on step failure: 'fail' | 'retry' | 'skip' | 'escalate'.",
+    )
+    retry_count: int = Field(
+        default=1,
+        ge=0,
+        le=10,
+        description="Max retries when on_step_fail=='retry'.",
+    )
+    escalate_to_pause: bool = Field(
+        default=True,
+        description="When on_step_fail is 'escalate' or 'fail', set status to 'paused' (True) or 'failed' (False).",
+    )
+
+
+class WorkflowConfig(BaseModel):
+    """Configuration for workflow execution"""
+
+    failure: WorkflowFailureConfig = Field(
+        default_factory=WorkflowFailureConfig,
+        description="On-step-failure behavior: retry, skip, escalate (plan 3.1).",
+    )
+    polling_interval: float = Field(
+        default=5.0,
+        ge=1.0,
+        description="Seconds between status checks when polling for completion",
+    )
+    timeout_seconds: float = Field(
+        default=3600.0,
+        ge=1.0,
+        description="Maximum time to wait for step completion (seconds)",
+    )
+    duration_threshold_seconds: float = Field(
+        default=30.0,
+        ge=1.0,
+        description="Duration threshold for background agent routing (seconds). Tasks estimated to take longer use background agents.",
+    )
+    state_persistence: StatePersistenceConfig = Field(
+        default_factory=StatePersistenceConfig,
+        description="State persistence and checkpointing configuration",
+    )
+    branch_cleanup: BranchCleanupConfig = Field(
+        default_factory=BranchCleanupConfig,
+        description="Git branch cleanup configuration for workflow worktrees",
+    )
+    artifacts: WorkflowArtifactConfig = Field(
+        default_factory=WorkflowArtifactConfig,
+        description="Artifact paths and naming configuration",
+    )
+    graceful_partial_completion: bool = Field(
+        default=True,
+        description="Save partial results on failure instead of losing all progress",
+    )
+    pre_flight_validation: bool = Field(
+        default=True,
+        description="Run pre-flight validation before workflow execution",
+    )
+
+
+class ContextBudgetConfig(BaseModel):
+    """Context budget when assembling Context7 and expert chunks (plan 3.2)."""
+
+    max_tokens_per_step: int = Field(
+        default=0,
+        ge=0,
+        description="Max tokens per step (0=no hard limit).",
+    )
+    max_chunks_per_step: int = Field(
+        default=50,
+        ge=1,
+        le=500,
+        description="Max chunks when injecting Context7 or expert docs.",
+    )
+    priority: list[str] = Field(
+        default_factory=lambda: ["current_task", "open_files", "recent_changes", "context7", "experts"],
+        description="Priority order when assembling context (for future use).",
+    )
+
+
+class BugFixAgentConfig(BaseModel):
+    """Configuration for Bug Fix Agent."""
+
+    max_iterations: int = Field(
+        default=3,
+        ge=1,
+        le=10,
+        description="Maximum iterations for fix loopback (1-10)",
+    )
+    auto_commit: bool = Field(
+        default=True,
+        description="Automatically commit changes to main branch when quality passes",
+    )
+    quality_thresholds: dict[str, float] = Field(
+        default_factory=lambda: {
+            "overall_min": 7.0,
+            "security_min": 6.5,
+            "maintainability_min": 7.0,
+        },
+        description="Quality thresholds for bug fixes (lower than full SDLC)",
+    )
+    escalation_threshold: int = Field(
+        default=2,
+        ge=1,
+        le=5,
+        description="Escalate to human after N failed iterations (1-5)",
+    )
+    escalation_enabled: bool = Field(
+        default=True,
+        description="Enable human escalation after failed iterations",
+    )
+    pre_commit_security_scan: bool = Field(
+        default=True,
+        description="Run security scan before committing changes",
+    )
+    metrics_enabled: bool = Field(
+        default=True,
+        description="Enable metrics collection for observability",
+    )
+    commit_strategy: str = Field(
+        default="direct_main",
+        description="Commit strategy: 'direct_main' (commit directly) or 'pull_request' (create PR)",
+    )
+    auto_merge_pr: bool = Field(
+        default=False,
+        description="Auto-merge PR if quality gates pass (requires PR workflow)",
+    )
+    require_pr_review: bool = Field(
+        default=False,
+        description="Require human review before merging PR",
+    )
+
+
+class ContinuousBugFixConfig(BaseModel):
+    """Configuration for Continuous Bug Fix feature."""
+
+    max_iterations: int = Field(
+        default=10,
+        ge=1,
+        le=100,
+        description="Maximum loop iterations (1-100)",
+    )
+    commit_strategy: str = Field(
+        default="one-per-bug",
+        description="Commit strategy: 'one-per-bug' (default) or 'batch'",
+    )
+    auto_commit: bool = Field(
+        default=True,
+        description="Automatically commit fixes after bug-fix-agent succeeds",
+    )
+    test_path: str = Field(
+        default="tests/",
+        description="Default test directory or file to run",
+    )
+    skip_patterns: list[str] = Field(
+        default_factory=list,
+        description="Patterns for bugs to skip (not yet implemented)",
+    )
+
+
+class BeadsConfig(BaseModel):
+    """Configuration for Beads (bd) task-tracking integration."""
+
+    enabled: bool = Field(
+        default=True,
+        description="Enable Beads (bd) integration. When false, all beads features are no-ops.",
+    )
+    required: bool = Field(
+        default=False,
+        description="When true, workflows fail if bd is unavailable or .beads not initialized.",
+    )
+    sync_epic: bool = Field(
+        default=True,
+        description="When beads.enabled is true, sync epic to bd (create issues + deps) before *epic run.",
+    )
+    hooks_simple_mode: bool = Field(
+        default=True,
+        description="When beads.enabled is true, create/close bd issues at start/end of *build and *fix.",
+    )
+    hooks_workflow: bool = Field(
+        default=True,
+        description="When beads.enabled is true, create/close a bd issue at start/end of CLI workflow runs.",
+    )
+    hooks_review: bool = Field(
+        default=False,
+        description="When beads.enabled is true, create/close for *review.",
+    )
+    hooks_test: bool = Field(
+        default=False,
+        description="When beads.enabled is true, create/close for *test.",
+    )
+    hooks_refactor: bool = Field(
+        default=False,
+        description="When beads.enabled is true, create/close for *refactor.",
+    )
+
+
+class SimpleModeConfig(BaseModel):
+    """Configuration for Simple Mode."""
+
+    enabled: bool = Field(
+        default=True, description="Enable Simple Mode (intent-based agent orchestration)"
+    )
+    auto_detect: bool = Field(
+        default=True,
+        description="Auto-enable Simple Mode for first-time users",
+    )
+    show_advanced: bool = Field(
+        default=False, description="Show advanced agent-specific options"
+    )
+    natural_language: bool = Field(
+        default=True, description="Enable natural language command parsing"
+    )
+    fast_mode_default: bool = Field(
+        default=False,
+        description="Default to fast mode for Simple Mode workflows (skip documentation steps)",
+    )
+    state_persistence_enabled: bool = Field(
+        default=True,
+        description="Enable workflow state persistence for resume capability",
+    )
+    checkpoint_retention_days: int = Field(
+        default=30,
+        ge=1,
+        description="Days to retain workflow checkpoints",
+    )
+    documentation_organized: bool = Field(
+        default=True,
+        description="Organize documentation by workflow ID",
+    )
+    create_latest_symlink: bool = Field(
+        default=False,
+        description="Create 'latest' symlink to most recent workflow",
+    )
+    context7_refresh_after_planning: bool = Field(
+        default=True,
+        description="After build planning (Step 2), refresh Context7 cache for libraries from the plan. Set false to disable.",
+    )
+    context7_refresh_max_libraries: int = Field(
+        default=10,
+        ge=1,
+        le=50,
+        description="Max number of libraries to warm in post-planning Context7 refresh (limits API use).",
+    )
+    enable_checkpoints: bool = Field(
+        default=True,
+        description="Enable mid-execution workflow checkpoints (Checkpoint 1: After Enhance, Checkpoint 2: After Planning, Checkpoint 3: Quality Gate)",
+    )
+    checkpoint_confidence_threshold: float = Field(
+        default=0.70,
+        ge=0.0,
+        le=1.0,
+        description="Minimum confidence threshold for checkpoint recommendations (0.0-1.0)",
+    )
+
+
+class AutoEnhancementConfig(BaseModel):
+    """Configuration for automatic prompt enhancement"""
+
+    enabled: bool = Field(
+        default=True, description="Enable auto-enhancement globally"
+    )
+    mode: str = Field(
+        default="cursor-skills",
+        description="Enhancement mode: cursor-skills, structured, or smart",
+    )
+    min_prompt_length: int = Field(
+        default=20, description="Minimum prompt length to trigger enhancement"
+    )
+    quality_threshold: float = Field(
+        default=50.0,
+        ge=0.0,
+        le=100.0,
+        description="Quality score below which to enhance",
+    )
+
+    commands: dict[str, dict[str, Any]] = Field(
+        default_factory=lambda: {
+            "implementer": {"enabled": True, "synthesis_mode": "full"},
+            "planner": {"enabled": True, "synthesis_mode": "quick"},
+            "analyst": {"enabled": True, "synthesis_mode": "quick"},
+            "architect": {"enabled": False},  # Off by default to avoid over-use
+            "designer": {"enabled": False},  # Off by default to avoid over-use
+        },
+        description="Per-command enhancement settings",
+    )
+
+
+class EvaluationConfig(BaseModel):
+    """Configuration for Evaluation & Quality Assurance Engine (Tier 1)"""
+
+    enabled: bool = Field(
+        default=True, description="Enable comprehensive evaluation engine"
+    )
+    include_behavioral_validation: bool = Field(
+        default=True, description="Include behavioral correctness validation"
+    )
+    include_spec_compliance: bool = Field(
+        default=True, description="Include specification compliance checking"
+    )
+    include_architectural_checks: bool = Field(
+        default=True, description="Include architectural pattern adherence checking"
+    )
+    issue_severity_thresholds: dict[str, int] = Field(
+        default_factory=lambda: {
+            "critical": 0,  # Hard fail
+            "high": 5,  # Soft fail/loopback
+            "medium": 10,
+            "low": 20,
+        },
+        description="Maximum allowed issues by severity for gate passing",
+    )
+    enable_remediation_loop: bool = Field(
+        default=True, description="Enable automatic remediation loops"
+    )
+    max_remediation_retries: int = Field(
+        default=3, ge=1, le=10, description="Maximum remediation retry attempts"
+    )
+
+
+class PromptLearningConfig(BaseModel):
+    """Configuration for Continual System Prompt Learning (Tier 1)"""
+
+    enabled: bool = Field(
+        default=True, description="Enable prompt learning system"
+    )
+    feedback_collection_enabled: bool = Field(
+        default=True, description="Enable feedback collection from Cursor IDE"
+    )
+    ab_testing_enabled: bool = Field(
+        default=True, description="Enable A/B testing for prompt variations"
+    )
+    auto_optimize_enabled: bool = Field(
+        default=True, description="Enable automatic prompt optimization"
+    )
+    min_samples_for_optimization: int = Field(
+        default=10, ge=5, description="Minimum feedback samples before optimization"
+    )
+    optimization_interval_hours: int = Field(
+        default=24, ge=1, description="Hours between optimization runs"
+    )
+    prompt_version_retention_days: int = Field(
+        default=90, ge=7, description="Days to retain prompt version history"
+    )
+    auto_update_skills: bool = Field(
+        default=False, description="Automatically update Skills with learned prompts"
+    )
+    require_approval_for_updates: bool = Field(
+        default=True, description="Require approval before updating prompts"
+    )
+
+
+class KnowledgeEngineConfig(BaseModel):
+    """Configuration for Knowledge Ecosystem Enhancement (Tier 1)"""
+
+    enabled: bool = Field(
+        default=True, description="Enable always-on knowledge orchestration engine"
+    )
+    auto_detect_domains: bool = Field(
+        default=True, description="Automatically detect project domains"
+    )
+    auto_create_experts: bool = Field(
+        default=True, description="Automatically create project experts"
+    )
+    knowledge_ingestion_enabled: bool = Field(
+        default=True, description="Enable automatic knowledge ingestion"
+    )
+    proactive_consultation: bool = Field(
+        default=True, description="Proactively consult experts before needed"
+    )
+    metrics_tracking_enabled: bool = Field(
+        default=True, description="Enable metrics tracking for knowledge quality"
+    )
+    kb_maintenance_schedule: str = Field(
+        default="weekly", description="KB maintenance schedule: daily, weekly, monthly"
+    )
+    governance_enabled: bool = Field(
+        default=True, description="Enable governance and safety layer"
+    )
+    require_approval_for_writes: bool = Field(
+        default=False, description="Require approval before writing to knowledge base"
+    )
+
+
+class ContextIntelligenceConfig(BaseModel):
+    """Configuration for Context Intelligence Engine (Tier 1)"""
+
+    enabled: bool = Field(
+        default=True, description="Enable context intelligence engine"
+    )
+    dynamic_gathering_enabled: bool = Field(
+        default=True, description="Enable dynamic context gathering"
+    )
+    repository_exploration_enabled: bool = Field(
+        default=True, description="Enable autonomous repository exploration"
+    )
+    pattern_recognition_enabled: bool = Field(
+        default=True, description="Enable pattern recognition and cataloging"
+    )
+    similarity_detection_enabled: bool = Field(
+        default=True, description="Enable similarity detection for code reuse"
+    )
+    historical_analysis_enabled: bool = Field(
+        default=True, description="Enable historical context analysis"
+    )
+    relevance_ranking_enabled: bool = Field(
+        default=True, description="Enable relevance-based context ranking"
+    )
+    token_budget_management_enabled: bool = Field(
+        default=True, description="Enable token budget management"
+    )
+    default_token_budget: int = Field(
+        default=4000, ge=1000, le=16000, description="Default token budget for context"
+    )
+    progressive_loading_enabled: bool = Field(
+        default=True, description="Enable progressive context loading"
+    )
+
+
+class AnalyticsConfig(BaseModel):
+    """Configuration for analytics and dual-write from execution metrics."""
+
+    record_from_execution: bool = Field(
+        default=True,
+        description="When True, also write to .tapps-agents/analytics/ when recording execution metrics (step and workflow). Set False for metrics-only (no analytics).",
+    )
+
+
+class GuardrailConfig(BaseModel):
+    """Security guardrails for subprocess and file writes (plan 2.2)."""
+
+    sandbox_subprocess: bool = Field(
+        default=True,
+        description="When True, never use shell for subprocess; use cwd=project_root.",
+    )
+    allowed_paths_write: list[str] = Field(
+        default_factory=list,
+        description="When non-empty, writes must be under project_root and under one of these prefixes (e.g. src, tests, docs, .tapps-agents). When empty, only under project_root.",
+    )
+
+
+class HumanOversightConfig(BaseModel):
+    """Human-in-the-loop oversight for *build and *full (plan 2.3)."""
+
+    checkpoints_before_steps: list[str] = Field(
+        default_factory=list,
+        description="Step/agent names before which to prompt: e.g. implementer, designer. If --auto, skipped.",
+    )
+    require_diff_review_implementer: bool = Field(
+        default=False,
+        description="Reserved: when implementer supports preview/diff, require review before apply. Not implemented.",
+    )
+    branch_for_agent_changes: bool = Field(
+        default=True,
+        description="For *build and *full: create branch tapps-agents/build-{workflow_id}; merge to main only after human review.",
+    )
+
+
+class ProjectConfig(BaseModel):
+    """Root configuration model for TappsCodingAgents project"""
+
+    # Project metadata
+    project_name: str | None = Field(default=None, description="Project name")
+    version: str | None = Field(default=None, description="Project version")
+
+    # CLI / runtime
+    offline_mode: bool = Field(
+        default=False,
+        description="Use offline mode (no network) when possible for CLI and agents",
+    )
+
+    # Core configuration
+    tooling: ToolingConfig = Field(
+        default_factory=ToolingConfig,
+        description="Canonical runtime/tool targets and policy (used by doctor/CI/agents)",
+    )
+    agents: AgentsConfig = Field(default_factory=AgentsConfig)
+    scoring: ScoringConfig = Field(default_factory=ScoringConfig)
+    expert: ExpertConfig = Field(
+        default_factory=ExpertConfig,
+        description="Expert consultation system configuration",
+    )
+    context7: Context7Config | None = Field(
+        default_factory=Context7Config, description="Context7 integration configuration"
+    )
+    context_budget: ContextBudgetConfig = Field(
+        default_factory=ContextBudgetConfig,
+        description="Context budget: max_chunks for Context7/expert injection; surface cached_at (plan 3.2).",
+    )
+    quality_tools: QualityToolsConfig | None = Field(
+        default_factory=QualityToolsConfig,
+        description="Quality analysis tools configuration (Phase 6)",
+    )
+    workflow: WorkflowConfig = Field(
+        default_factory=WorkflowConfig,
+        description="Workflow execution configuration",
+    )
+    analytics: AnalyticsConfig = Field(
+        default_factory=AnalyticsConfig,
+        description="Analytics and dual-write from execution metrics (health usage, outcomes).",
+    )
+    guardrails: GuardrailConfig = Field(
+        default_factory=GuardrailConfig,
+        description="Security guardrails: subprocess sandbox, path allowlist for writes (plan 2.2).",
+    )
+    human_oversight: HumanOversightConfig = Field(
+        default_factory=HumanOversightConfig,
+        description="Human oversight: step checkpoints, branch-for-agent-changes (plan 2.3). require_diff_review_implementer reserved.",
+    )
+    simple_mode: SimpleModeConfig = Field(
+        default_factory=SimpleModeConfig,
+        description="Simple Mode configuration (intent-based orchestration)",
+    )
+    beads: BeadsConfig = Field(
+        default_factory=BeadsConfig,
+        description="Beads (bd) task-tracking integration. See docs/BEADS_INTEGRATION.md.",
+    )
+    bug_fix_agent: BugFixAgentConfig = Field(
+        default_factory=BugFixAgentConfig,
+        description="Bug Fix Agent configuration (automated bug fixing with auto-commit)",
+    )
+    continuous_bug_fix: ContinuousBugFixConfig = Field(
+        default_factory=ContinuousBugFixConfig,
+        description="Continuous Bug Fix configuration (automated bug finding and fixing loop)",
+    )
+    auto_enhancement: AutoEnhancementConfig = Field(
+        default_factory=AutoEnhancementConfig,
+        description="Automatic prompt enhancement configuration",
+    )
+
+    # Tier 1 Enhancement Configurations
+    evaluation: EvaluationConfig = Field(
+        default_factory=EvaluationConfig,
+        description="Evaluation & Quality Assurance Engine configuration (Tier 1)",
+    )
+    prompt_learning: PromptLearningConfig = Field(
+        default_factory=PromptLearningConfig,
+        description="Continual System Prompt Learning configuration (Tier 1)",
+    )
+    knowledge_engine: KnowledgeEngineConfig = Field(
+        default_factory=KnowledgeEngineConfig,
+        description="Knowledge Ecosystem Enhancement configuration (Tier 1)",
+    )
+    context_intelligence: ContextIntelligenceConfig = Field(
+        default_factory=ContextIntelligenceConfig,
+        description="Context Intelligence Engine configuration (Tier 1)",
+    )
+    cleanup: CleanupConfig = Field(
+        default_factory=CleanupConfig,
+        description="Cleanup operations configuration",
+    )
+
+    model_config = {
+        "extra": "ignore",  # Ignore unknown fields
+        "validate_assignment": True,
+    }
+
+
+def load_config(config_path: Path | None = None) -> ProjectConfig:
+    """
+    Load configuration from YAML file.
+
+    Args:
+        config_path: Path to config.yaml file. If None, looks for `.tapps-agents/config.yaml`
+                    in current directory or parent directories.
+
+    Returns:
+        ProjectConfig instance with loaded values
+
+    Raises:
+        FileNotFoundError: If config file doesn't exist and no defaults available
+        ValueError: If config file is invalid
+    """
+    if config_path is None:
+        # Look for .tapps-agents/config.yaml in current and parent directories
+        current = Path.cwd()
+        for parent in [current] + list(current.parents):
+            candidate = parent / ".tapps-agents" / "config.yaml"
+            if candidate.exists():
+                config_path = candidate
+                break
+
+        if config_path is None:
+            # Return defaults if no config file found
+            return ProjectConfig()
+
+    if not config_path.exists():
+        # Return defaults if file doesn't exist
+        return ProjectConfig()
+
+    try:
+        # Use utf-8-sig to automatically handle UTF-8 BOM (common on Windows)
+        # This prevents YAML parsing failures when files have BOM prefix (\xef\xbb\xbf)
+        with open(config_path, encoding="utf-8-sig") as f:
+            data = yaml.safe_load(f)
+
+        if data is None:
+            # Empty file, return defaults
+            return ProjectConfig()
+
+        # Validate and load config
+        return ProjectConfig(**data)
+    except yaml.YAMLError as e:
+        raise ValueError(f"Invalid YAML in config file {config_path}: {e}") from e
+    except Exception as e:
+        raise ValueError(f"Error loading config from {config_path}: {e}") from e
+
+
+def save_config(config_path: Path, config: ProjectConfig) -> None:
+    """
+    Save configuration to a YAML file.
+
+    Args:
+        config_path: Path to the config file
+        config: ProjectConfig instance to save
+
+    Raises:
+        OSError: If the file cannot be written
+    """
+    config_path.parent.mkdir(parents=True, exist_ok=True)
+
+    # Load existing config to preserve other settings
+    existing_data: dict[str, Any] = {}
+    if config_path.exists():
+        try:
+            # Use utf-8-sig to handle UTF-8 BOM (common on Windows)
+            with open(config_path, encoding="utf-8-sig") as f:
+                existing_data = yaml.safe_load(f) or {}
+        except Exception:
+            # If we can't read existing config, start fresh
+            existing_data = {}
+
+    # Merge with new config (convert to dict, preserving existing values)
+    new_data = config.model_dump(exclude_none=True, mode="json")
+    
+    def deep_merge(existing: dict[str, Any], new: dict[str, Any]) -> dict[str, Any]:
+        """Recursively merge new dict into existing dict."""
+        result = existing.copy()
+        for key, value in new.items():
+            if key in result and isinstance(result[key], dict) and isinstance(value, dict):
+                # Recursively merge nested dictionaries
+                result[key] = deep_merge(result[key], value)
+            else:
+                # Overwrite with new value
+                result[key] = value
+        return result
+    
+    # Deep merge: preserve existing nested values
+    existing_data = deep_merge(existing_data, new_data)
+
+    # Save
+    with open(config_path, "w", encoding="utf-8") as f:
+        yaml.dump(existing_data, f, default_flow_style=False, sort_keys=False, allow_unicode=True)
+
+
+def get_default_config() -> dict[str, Any]:
+    """
+    Get default configuration as a dictionary (for template generation).
+
+    Returns:
+        Dictionary representation of default config with Path objects as strings
+    """
+    config = ProjectConfig()
+    # Use model_dump with mode="json" to serialize Path objects as strings
+    # This is required for YAML serialization (yaml.safe_dump can't handle Path objects)
+    return config.model_dump(exclude_none=True, mode="json")
+
+
+def get_expert_config(config: ProjectConfig | None = None) -> ExpertConfig:
+    """
+    Get expert configuration, loading from file if needed.
+
+    Args:
+        config: Optional ProjectConfig instance. If None, loads from file.
+
+    Returns:
+        ExpertConfig instance
+    """
+    if config is None:
+        config = load_config()
+    return config.expert