tablassert 7.0.0__py3-none-any.whl

tablassert/downloader.py

@@ -0,0 +1,35 @@
+from playwright.sync_api import sync_playwright
+from typing import Optional
+from pathlib import Path
+from time import sleep
+import pyexcel
+
+def modernize_xls(p: Path) -> Path:
+  xlsx: Path = p.with_suffix(".xlsx")
+  pyexcel.save_book_as(file_name=str(p), dest_file_name=str(xlsx))
+  return xlsx
+
+
+def from_url(website: str, p: Path, timeout: int = 60_000, retries: int = 3) -> Path:
+  p.parent.mkdir(parents=True, exist_ok=True)
+  if p.is_file():
+    return p
+
+  last: Optional[Exception] = None
+  for attempt in range(retries):
+    try:
+      with sync_playwright() as pw:
+        browser = pw.chromium.launch(headless=True)
+        page = browser.new_page()
+        page.goto(website, wait_until="networkidle", timeout=timeout)
+        with page.expect_download(timeout=timeout) as info:
+          download = info.value
+          download.save_as(p)
+        browser.close()
+      return p
+    except Exception as e:
+      last = e
+      if attempt < retries - 1:
+        sleep(2**attempt)
+
+  raise RuntimeError(f"01 | Download Failed After {retries} Attempts: {last}")

tablassert/enums.py

@@ -0,0 +1,521 @@
+from enum import Enum
+
+
+class Tokens(str, Enum):
+  AUTO = "auto"
+  VALUES = "values"
+
+
+class Repositories(str, Enum):
+  PUBMED_CENTRAL = "PMC"
+  PUBMED = "PMID"
+
+
+class Contributions(str, Enum):
+  CURATION = "curation"
+  VALIDATION = "validation"
+  TOOL = "tool"
+
+
+class Comparisons(str, Enum):
+  GT = "gt"
+  GE = "ge"
+  LT = "lt"
+  LE = "le"
+  EQ = "eq"
+  NE = "ne"
+
+
+class Functions(str, Enum):
+  COPYSIGN = "copysign"
+  POW = "pow"
+
+
+class Files(str, Enum):
+  TEXT = "text"
+  EXCEL = "excel"
+
+
+class EncodingMethods(str, Enum):
+  VALUE = "value"
+  COLUMN = "column"
+
+
+class FillMethods(str, Enum):
+  FORWARD = "forward"
+  BACKWARD = "backward"
+  MIN = "min"
+  MAX = "max"
+  MEAN = "mean"
+  ZERO = "zero"
+  ONE = "one"
+
+
+class Syntaxes(str, Enum):
+  TC3 = "TC3"
+  GC2 = "GC2"
+
+
+class Statuses(str, Enum):
+  ALPHA = "alpha"
+  BETA = "beta"
+  PRIMETIME = "primetime"
+
+
+class Categories(str, Enum):
+  ACCESSIBLE_DNA_REGION = "AccessibleDnaRegion"
+  ACTIVITY = "Activity"
+  ADMINISTRATIVE_ENTITY = "AdministrativeEntity"
+  AGENT = "Agent"
+  ANATOMICAL_ENTITY = "AnatomicalEntity"
+  ANNOTATION = "Annotation"
+  ARTICLE = "Article"
+  ATTRIBUTE = "Attribute"
+  BACTERIUM = "Bacterium"
+  BEHAVIOR = "Behavior"
+  BEHAVIORAL_EXPOSURE = "BehavioralExposure"
+  BEHAVIORAL_FEATURE = "BehavioralFeature"
+  BEHAVIORAL_OUTCOME = "BehavioralOutcome"
+  BIOLOGICAL_ENTITY = "BiologicalEntity"
+  BIOLOGICAL_PROCESS = "BiologicalProcess"
+  BIOLOGICAL_PROCESS_OR_ACTIVITY = "BiologicalProcessOrActivity"
+  BIOLOGICAL_SEX = "BiologicalSex"
+  BIOTIC_EXPOSURE = "BioticExposure"
+  BOOK = "Book"
+  BOOK_CHAPTER = "BookChapter"
+  CASE = "Case"
+  CELL = "Cell"
+  CELL_LINE = "CellLine"
+  CELLULAR_COMPONENT = "CellularComponent"
+  CELLULAR_ORGANISM = "CellularOrganism"
+  CHEMICAL_ENTITY = "ChemicalEntity"
+  CHEMICAL_EXPOSURE = "ChemicalExposure"
+  CHEMICAL_MIXTURE = "ChemicalMixture"
+  CHEMICAL_ROLE = "ChemicalRole"
+  CHI_SQUARED_ANALYSIS_RESULT = "ChiSquaredAnalysisResult"
+  CLINICAL_ATTRIBUTE = "ClinicalAttribute"
+  CLINICAL_COURSE = "ClinicalCourse"
+  CLINICAL_ENTITY = "ClinicalEntity"
+  CLINICAL_FINDING = "ClinicalFinding"
+  CLINICAL_INTERVENTION = "ClinicalIntervention"
+  CLINICAL_MEASUREMENT = "ClinicalMeasurement"
+  CLINICAL_MODIFIER = "ClinicalModifier"
+  CLINICAL_TRIAL = "ClinicalTrial"
+  CODING_SEQUENCE = "CodingSequence"
+  COHORT = "Cohort"
+  COMMON_DATA_ELEMENT = "CommonDataElement"
+  COMPLEX_CHEMICAL_EXPOSURE = "ComplexChemicalExposure"
+  COMPLEX_MOLECULAR_MIXTURE = "ComplexMolecularMixture"
+  CONCEPT_COUNT_ANALYSIS_RESULT = "ConceptCountAnalysisResult"
+  CONFIDENCE_LEVEL = "ConfidenceLevel"
+  DATASET = "Dataset"
+  DATASET_DISTRIBUTION = "DatasetDistribution"
+  DATASET_SUMMARY = "DatasetSummary"
+  DATASET_VERSION = "DatasetVersion"
+  DEVICE = "Device"
+  DIAGNOSTIC_AID = "DiagnosticAid"
+  DISEASE = "Disease"
+  DISEASE_OR_PHENOTYPIC_FEATURE = "DiseaseOrPhenotypicFeature"
+  DISEASE_OR_PHENOTYPIC_FEATURE_EXPOSURE = "DiseaseOrPhenotypicFeatureExposure"
+  DISEASE_OR_PHENOTYPIC_FEATURE_OUTCOME = "DiseaseOrPhenotypicFeatureOutcome"
+  DRUG = "Drug"
+  DRUG_EXPOSURE = "DrugExposure"
+  DRUG_LABEL = "DrugLabel"
+  DRUG_TO_GENE_INTERACTION_EXPOSURE = "DrugToGeneInteractionExposure"
+  ENTITY = "Entity"
+  ENVIRONMENTAL_EXPOSURE = "EnvironmentalExposure"
+  ENVIRONMENTAL_FEATURE = "EnvironmentalFeature"
+  ENVIRONMENTAL_FOOD_CONTAMINANT = "EnvironmentalFoodContaminant"
+  ENVIRONMENTAL_PROCESS = "EnvironmentalProcess"
+  EPIDEMIOLOGICAL_OUTCOME = "EpidemiologicalOutcome"
+  EVENT = "Event"
+  EVIDENCE_TYPE = "EvidenceType"
+  EXON = "Exon"
+  FOOD = "Food"
+  FOOD_ADDITIVE = "FoodAdditive"
+  FUNGUS = "Fungus"
+  GENE = "Gene"
+  GENE_FAMILY = "GeneFamily"
+  GENETIC_INHERITANCE = "GeneticInheritance"
+  GENOME = "Genome"
+  GENOMIC_BACKGROUND_EXPOSURE = "GenomicBackgroundExposure"
+  GENOTYPE = "Genotype"
+  GENOTYPIC_SEX = "GenotypicSex"
+  GEOGRAPHIC_EXPOSURE = "GeographicExposure"
+  GEOGRAPHIC_LOCATION = "GeographicLocation"
+  GEOGRAPHIC_LOCATION_AT_TIME = "GeographicLocationAtTime"
+  GROSS_ANATOMICAL_STRUCTURE = "GrossAnatomicalStructure"
+  HAPLOTYPE = "Haplotype"
+  HOSPITALIZATION = "Hospitalization"
+  HOSPITALIZATION_OUTCOME = "HospitalizationOutcome"
+  HUMAN = "Human"
+  INDIVIDUAL_ORGANISM = "IndividualOrganism"
+  INFORMATION_CONTENT_ENTITY = "InformationContentEntity"
+  INVERTEBRATE = "Invertebrate"
+  JOURNAL_ARTICLE = "JournalArticle"
+  LIFE_STAGE = "LifeStage"
+  LOG_ODDS_ANALYSIS_RESULT = "LogOddsAnalysisResult"
+  MACROMOLECULAR_COMPLEX = "MacromolecularComplex"
+  MAMMAL = "Mammal"
+  MAPPING_COLLECTION = "MappingCollection"
+  MATERIAL_SAMPLE = "MaterialSample"
+  MICRORNA = "Microrna"
+  MOLECULAR_ACTIVITY = "MolecularActivity"
+  MOLECULAR_ENTITY = "MolecularEntity"
+  MOLECULAR_MIXTURE = "MolecularMixture"
+  MORTALITY_OUTCOME = "MortalityOutcome"
+  NAMED_THING = "NamedThing"
+  NONCODING_RNA_PRODUCT = "NoncodingRnaProduct"
+  NUCLEIC_ACID_ENTITY = "NucleicAcidEntity"
+  NUCLEIC_ACID_SEQUENCE_MOTIF = "NucleicAcidSequenceMotif"
+  NUCLEOSOME_MODIFICATION = "NucleosomeModification"
+  OBSERVED_EXPECTED_FREQUENCY_ANALYSIS_RESULT = "ObservedExpectedFrequencyAnalysisResult"
+  ONSET = "Onset"
+  ORGANISM_ATTRIBUTE = "OrganismAttribute"
+  ORGANISM_TAXON = "OrganismTaxon"
+  ORGANISMAL_ENTITY = "OrganismalEntity"
+  PATENT = "Patent"
+  PATHOLOGICAL_ANATOMICAL_EXPOSURE = "PathologicalAnatomicalExposure"
+  PATHOLOGICAL_ANATOMICAL_OUTCOME = "PathologicalAnatomicalOutcome"
+  PATHOLOGICAL_ANATOMICAL_STRUCTURE = "PathologicalAnatomicalStructure"
+  PATHOLOGICAL_PROCESS = "PathologicalProcess"
+  PATHOLOGICAL_PROCESS_EXPOSURE = "PathologicalProcessExposure"
+  PATHOLOGICAL_PROCESS_OUTCOME = "PathologicalProcessOutcome"
+  PATHWAY = "Pathway"
+  PHENOMENON = "Phenomenon"
+  PHENOTYPIC_FEATURE = "PhenotypicFeature"
+  PHENOTYPIC_QUALITY = "PhenotypicQuality"
+  PHENOTYPIC_SEX = "PhenotypicSex"
+  PHYSICAL_ENTITY = "PhysicalEntity"
+  PHYSIOLOGICAL_PROCESS = "PhysiologicalProcess"
+  PLANETARY_ENTITY = "PlanetaryEntity"
+  PLANT = "Plant"
+  POLYPEPTIDE = "Polypeptide"
+  POPULATION_OF_INDIVIDUAL_ORGANISMS = "PopulationOfIndividualOrganisms"
+  POSTTRANSLATIONAL_MODIFICATION = "PosttranslationalModification"
+  PREDICATE_MAPPING = "PredicateMapping"
+  PREPRINT_PUBLICATION = "PreprintPublication"
+  PROCEDURE = "Procedure"
+  PROCESSED_MATERIAL = "ProcessedMaterial"
+  PROTEIN = "Protein"
+  PROTEIN_DOMAIN = "ProteinDomain"
+  PROTEIN_FAMILY = "ProteinFamily"
+  PROTEIN_ISOFORM = "ProteinIsoform"
+  PUBLICATION = "Publication"
+  QUANTITY_VALUE = "QuantityValue"
+  REAGENT_TARGETED_GENE = "ReagentTargetedGene"
+  REGULATORY_REGION = "RegulatoryRegion"
+  RELATIONSHIP_TYPE = "RelationshipType"
+  RELATIVE_FREQUENCY_ANALYSIS_RESULT = "RelativeFrequencyAnalysisResult"
+  RETRIEVAL_SOURCE = "RetrievalSource"
+  RNA_PRODUCT = "RnaProduct"
+  RNA_PRODUCT_ISOFORM = "RnaProductIsoform"
+  SEQUENCE_VARIANT = "SequenceVariant"
+  SERIAL = "Serial"
+  SEVERITY_VALUE = "SeverityValue"
+  SIRNA = "Sirna"
+  SMALL_MOLECULE = "SmallMolecule"
+  SNV = "Snv"
+  SOCIOECONOMIC_ATTRIBUTE = "SocioeconomicAttribute"
+  SOCIOECONOMIC_EXPOSURE = "SocioeconomicExposure"
+  SOCIOECONOMIC_OUTCOME = "SocioeconomicOutcome"
+  STUDY = "Study"
+  STUDY_POPULATION = "StudyPopulation"
+  STUDY_RESULT = "StudyResult"
+  STUDY_VARIABLE = "StudyVariable"
+  TAXONOMIC_RANK = "TaxonomicRank"
+  TEXT_MINING_RESULT = "TextMiningResult"
+  TRANSCRIPT = "Transcript"
+  TRANSCRIPTION_FACTOR_BINDING_SITE = "TranscriptionFactorBindingSite"
+  TREATMENT = "Treatment"
+  VERTEBRATE = "Vertebrate"
+  VIRUS = "Virus"
+  WEB_PAGE = "WebPage"
+  ZYGOSITY = "Zygosity"
+
+
+class Predicates(str, Enum):
+  ACTIVE_IN = "active_in"
+  ACTIVELY_INVOLVED_IN = "actively_involved_in"
+  ACTIVELY_INVOLVES = "actively_involves"
+  ACTS_UPSTREAM_OF = "acts_upstream_of"
+  ACTS_UPSTREAM_OF_NEGATIVE_EFFECT = "acts_upstream_of_negative_effect"
+  ACTS_UPSTREAM_OF_OR_WITHIN = "acts_upstream_of_or_within"
+  ACTS_UPSTREAM_OF_OR_WITHIN_NEGATIVE_EFFECT = "acts_upstream_of_or_within_negative_effect"
+  ACTS_UPSTREAM_OF_OR_WITHIN_POSITIVE_EFFECT = "acts_upstream_of_or_within_positive_effect"
+  ACTS_UPSTREAM_OF_POSITIVE_EFFECT = "acts_upstream_of_positive_effect"
+  ADVERSE_EVENT_OF = "adverse_event_of"
+  AFFECTED_BY = "affected_by"
+  AFFECTS = "affects"
+  AFFECTS_LIKELIHOOD_OF = "affects_likelihood_of"
+  AFFECTS_RESPONSE_TO = "affects_response_to"
+  AMELIORATES_CONDITION = "ameliorates_condition"
+  AMOUNT_OR_ACTIVITY_DECREASED_BY = "amount_or_activity_decreased_by"
+  AMOUNT_OR_ACTIVITY_INCREASED_BY = "amount_or_activity_increased_by"
+  APPLIED_TO_TREAT = "applied_to_treat"
+  ASSESSES = "assesses"
+  ASSOCIATED_WITH = "associated_with"
+  ASSOCIATED_WITH_DECREASED_LIKELIHOOD_OF = "associated_with_decreased_likelihood_of"
+  ASSOCIATED_WITH_INCREASED_LIKELIHOOD_OF = "associated_with_increased_likelihood_of"
+  ASSOCIATED_WITH_LIKELIHOOD_OF = "associated_with_likelihood_of"
+  ASSOCIATED_WITH_RESISTANCE_TO = "associated_with_resistance_to"
+  ASSOCIATED_WITH_SENSITIVITY_TO = "associated_with_sensitivity_to"
+  AUTHOR = "author"
+  BENEFICIAL_IN_MODELS_FOR = "beneficial_in_models_for"
+  BINDS = "binds"
+  BIOMARKER_FOR = "biomarker_for"
+  BROAD_MATCH = "broad_match"
+  CAN_BE_CARRIED_OUT_BY = "can_be_carried_out_by"
+  CAPABLE_OF = "capable_of"
+  CATALYZES = "catalyzes"
+  CAUSED_BY = "caused_by"
+  CAUSES = "causes"
+  CHEMICALLY_SIMILAR_TO = "chemically_similar_to"
+  CLOSE_MATCH = "close_match"
+  COEXISTS_WITH = "coexists_with"
+  COEXPRESSED_WITH = "coexpressed_with"
+  COLOCALIZES_WITH = "colocalizes_with"
+  COMPLETED_BY = "completed_by"
+  COMPOSED_PRIMARILY_OF = "composed_primarily_of"
+  CONDITION_AMELIORATED_BY = "condition_ameliorated_by"
+  CONDITION_ASSOCIATED_WITH_GENE = "condition_associated_with_gene"
+  CONDITION_EXACERBATED_BY = "condition_exacerbated_by"
+  CONDITION_PREDISPOSED_BY = "condition_predisposed_by"
+  CONDITION_PREVENTED_BY = "condition_prevented_by"
+  CONDITION_PROMOTED_BY = "condition_promoted_by"
+  CONSUMED_BY = "consumed_by"
+  CONSUMES = "consumes"
+  CONTAINS_PROCESS = "contains_process"
+  CONTRAINDICATED_IN = "contraindicated_in"
+  CONTRIBUTES_TO = "contributes_to"
+  CONTRIBUTION_FROM = "contribution_from"
+  CONTRIBUTOR = "contributor"
+  CORRELATED_WITH = "correlated_with"
+  DECREASED_AMOUNT_IN = "decreased_amount_in"
+  DECREASED_LIKELIHOOD_ASSOCIATED_WITH = "decreased_likelihood_associated_with"
+  DECREASES_AMOUNT_OR_ACTIVITY_OF = "decreases_amount_or_activity_of"
+  DECREASES_RESPONSE_TO = "decreases_response_to"
+  DERIVES_FROM = "derives_from"
+  DERIVES_INTO = "derives_into"
+  DEVELOPS_FROM = "develops_from"
+  DEVELOPS_INTO = "develops_into"
+  DIAGNOSES = "diagnoses"
+  DIRECTLY_PHYSICALLY_INTERACTS_WITH = "directly_physically_interacts_with"
+  DISEASE_HAS_BASIS_IN = "disease_has_basis_in"
+  DISEASE_HAS_LOCATION = "disease_has_location"
+  DISRUPTED_BY = "disrupted_by"
+  DISRUPTS = "disrupts"
+  EDITOR = "editor"
+  ENABLED_BY = "enabled_by"
+  ENABLES = "enables"
+  EXACERBATES_CONDITION = "exacerbates_condition"
+  EXACT_MATCH = "exact_match"
+  EXPRESSED_IN = "expressed_in"
+  EXPRESSES = "expresses"
+  FOOD_COMPONENT_OF = "food_component_of"
+  GENE_ASSOCIATED_WITH_CONDITION = "gene_associated_with_condition"
+  GENE_PRODUCT_OF = "gene_product_of"
+  GENE_FUSION_WITH = "gene_fusion_with"
+  GENETIC_ASSOCIATION = "genetic_association"
+  GENETIC_NEIGHBORHOOD_OF = "genetic_neighborhood_of"
+  GENETICALLY_ASSOCIATED_WITH = "genetically_associated_with"
+  GENETICALLY_INTERACTS_WITH = "genetically_interacts_with"
+  HAS_ACTIVE_COMPONENT = "has_active_component"
+  HAS_ACTIVE_INGREDIENT = "has_active_ingredient"
+  HAS_ADVERSE_EVENT = "has_adverse_event"
+  HAS_AUTHOR = "has_author"
+  HAS_BIOMARKER = "has_biomarker"
+  HAS_CATALYST = "has_catalyst"
+  HAS_CHEMICAL_ROLE = "has_chemical_role"
+  HAS_COMPLETED = "has_completed"
+  HAS_CONTRAINDICATION = "has_contraindication"
+  HAS_CONTRIBUTOR = "has_contributor"
+  HAS_DECREASED_AMOUNT = "has_decreased_amount"
+  HAS_EDITOR = "has_editor"
+  HAS_EXCIPIENT = "has_excipient"
+  HAS_FOOD_COMPONENT = "has_food_component"
+  HAS_FRAMESHIFT_VARIANT = "has_frameshift_variant"
+  HAS_GENE_PRODUCT = "has_gene_product"
+  HAS_INCREASED_AMOUNT = "has_increased_amount"
+  HAS_INPUT = "has_input"
+  HAS_MANIFESTATION = "has_manifestation"
+  HAS_MEMBER = "has_member"
+  HAS_METABOLITE = "has_metabolite"
+  HAS_MISSENSE_VARIANT = "has_missense_variant"
+  HAS_MODE_OF_INHERITANCE = "has_mode_of_inheritance"
+  HAS_MOLECULAR_CONSEQUENCE = "has_molecular_consequence"
+  HAS_NEARBY_VARIANT = "has_nearby_variant"
+  HAS_NEGATIVE_UPSTREAM_ACTOR = "has_negative_upstream_actor"
+  HAS_NEGATIVE_UPSTREAM_OR_WITHIN_ACTOR = "has_negative_upstream_or_within_actor"
+  HAS_NON_CODING_VARIANT = "has_non_coding_variant"
+  HAS_NONSENSE_VARIANT = "has_nonsense_variant"
+  HAS_NOT_COMPLETED = "has_not_completed"
+  HAS_NUTRIENT = "has_nutrient"
+  HAS_OUTPUT = "has_output"
+  HAS_PART = "has_part"
+  HAS_PARTICIPANT = "has_participant"
+  HAS_PHENOTYPE = "has_phenotype"
+  HAS_PLASMA_MEMBRANE_PART = "has_plasma_membrane_part"
+  HAS_POSITIVE_UPSTREAM_ACTOR = "has_positive_upstream_actor"
+  HAS_POSITIVE_UPSTREAM_OR_WITHIN_ACTOR = "has_positive_upstream_or_within_actor"
+  HAS_PROVIDER = "has_provider"
+  HAS_PUBLISHER = "has_publisher"
+  HAS_SEQUENCE_LOCATION = "has_sequence_location"
+  HAS_SEQUENCE_VARIANT = "has_sequence_variant"
+  HAS_SIDE_EFFECT = "has_side_effect"
+  HAS_SPLICE_SITE_VARIANT = "has_splice_site_variant"
+  HAS_SUBSTRATE = "has_substrate"
+  HAS_SYNONYMOUS_VARIANT = "has_synonymous_variant"
+  HAS_TARGET = "has_target"
+  HAS_UPSTREAM_ACTOR = "has_upstream_actor"
+  HAS_UPSTREAM_OR_WITHIN_ACTOR = "has_upstream_or_within_actor"
+  HAS_VARIANT_PART = "has_variant_part"
+  HOMOLOGOUS_TO = "homologous_to"
+  IN_CELL_POPULATION_WITH = "in_cell_population_with"
+  IN_CLINICAL_TRIALS_FOR = "in_clinical_trials_for"
+  IN_COMPLEX_WITH = "in_complex_with"
+  IN_LINKAGE_DISEQUILIBRIUM_WITH = "in_linkage_disequilibrium_with"
+  IN_PATHWAY_WITH = "in_pathway_with"
+  IN_PRECLINICAL_TRIALS_FOR = "in_preclinical_trials_for"
+  IN_TAXON = "in_taxon"
+  INCREASED_AMOUNT_OF = "increased_amount_of"
+  INCREASED_LIKELIHOOD_ASSOCIATED_WITH = "increased_likelihood_associated_with"
+  INCREASES_AMOUNT_OR_ACTIVITY_OF = "increases_amount_or_activity_of"
+  INCREASES_RESPONSE_TO = "increases_response_to"
+  INDIRECTLY_PHYSICALLY_INTERACTS_WITH = "indirectly_physically_interacts_with"
+  INTERACTS_WITH = "interacts_with"
+  IS_ACTIVE_INGREDIENT_OF = "is_active_ingredient_of"
+  IS_ASSESSED_BY = "is_assessed_by"
+  IS_DIAGNOSED_BY = "is_diagnosed_by"
+  IS_EXCIPIENT_OF = "is_excipient_of"
+  IS_FRAMESHIFT_VARIANT_OF = "is_frameshift_variant_of"
+  IS_INPUT_OF = "is_input_of"
+  IS_METABOLITE_OF = "is_metabolite_of"
+  IS_MISSENSE_VARIANT_OF = "is_missense_variant_of"
+  IS_MOLECULAR_CONSEQUENCE_OF = "is_molecular_consequence_of"
+  IS_NEARBY_VARIANT_OF = "is_nearby_variant_of"
+  IS_NON_CODING_VARIANT_OF = "is_non_coding_variant_of"
+  IS_NONSENSE_VARIANT_OF = "is_nonsense_variant_of"
+  IS_OUTPUT_OF = "is_output_of"
+  IS_SEQUENCE_VARIANT_OF = "is_sequence_variant_of"
+  IS_SIDE_EFFECT_OF = "is_side_effect_of"
+  IS_SPLICE_SITE_VARIANT_OF = "is_splice_site_variant_of"
+  IS_SUBSTRATE_OF = "is_substrate_of"
+  IS_SYNONYMOUS_VARIANT_OF = "is_synonymous_variant_of"
+  LACKS_PART = "lacks_part"
+  LIKELIHOOD_AFFECTED_BY = "likelihood_affected_by"
+  LIKELIHOOD_ASSOCIATED_WITH = "likelihood_associated_with"
+  LOCATED_IN = "located_in"
+  LOCATION_OF = "location_of"
+  LOCATION_OF_DISEASE = "location_of_disease"
+  MANIFESTATION_OF = "manifestation_of"
+  MEMBER_OF = "member_of"
+  MENTIONED_BY = "mentioned_by"
+  MENTIONS = "mentions"
+  MISSING_FROM = "missing_from"
+  MODE_OF_INHERITANCE_OF = "mode_of_inheritance_of"
+  MODEL_OF = "model_of"
+  MODELS = "models"
+  MODELS_DEMONSTRATING_BENEFITS_FOR = "models_demonstrating_benefits_for"
+  NARROW_MATCH = "narrow_match"
+  NEGATIVELY_CORRELATED_WITH = "negatively_correlated_with"
+  NOT_COMPLETED_BY = "not_completed_by"
+  NUTRIENT_OF = "nutrient_of"
+  OCCURS_IN = "occurs_in"
+  OCCURS_IN_DISEASE = "occurs_in_disease"
+  OCCURS_TOGETHER_IN_LITERATURE_WITH = "occurs_together_in_literature_with"
+  OPPOSITE_OF = "opposite_of"
+  ORTHOLOGOUS_TO = "orthologous_to"
+  OVERLAPS = "overlaps"
+  PARALOGOUS_TO = "paralogous_to"
+  PART_OF = "part_of"
+  PARTICIPATES_IN = "participates_in"
+  PHENOTYPE_OF = "phenotype_of"
+  PHYSICALLY_INTERACTS_WITH = "physically_interacts_with"
+  PLASMA_MEMBRANE_PART_OF = "plasma_membrane_part_of"
+  POSITIVELY_CORRELATED_WITH = "positively_correlated_with"
+  PRECEDED_BY = "preceded_by"
+  PRECEDES = "precedes"
+  PREDISPOSES_TO_CONDITION = "predisposes_to_condition"
+  PREVENTATIVE_FOR_CONDITION = "preventative_for_condition"
+  PRIMARILY_COMPOSED_OF = "primarily_composed_of"
+  PRODUCED_BY = "produced_by"
+  PRODUCES = "produces"
+  PROMOTES_CONDITION = "promotes_condition"
+  PROVIDER = "provider"
+  PUBLISHER = "publisher"
+  REGULATED_BY = "regulated_by"
+  REGULATES = "regulates"
+  RELATED_CONDITION = "related_condition"
+  RELATED_TO = "related_to"
+  RELATED_TO_AT_CONCEPT_LEVEL = "related_to_at_concept_level"
+  RELATED_TO_AT_INSTANCE_LEVEL = "related_to_at_instance_level"
+  RESISTANCE_ASSOCIATED_WITH = "resistance_associated_with"
+  RESPONSE_AFFECTED_BY = "response_affected_by"
+  RESPONSE_DECREASED_BY = "response_decreased_by"
+  RESPONSE_INCREASED_BY = "response_increased_by"
+  SAME_AS = "same_as"
+  SENSITIVITY_ASSOCIATED_WITH = "sensitivity_associated_with"
+  SEQUENCE_LOCATION_OF = "sequence_location_of"
+  SIMILAR_TO = "similar_to"
+  STUDIED_TO_TREAT = "studied_to_treat"
+  SUBCLASS_OF = "subclass_of"
+  SUBJECT_OF_TREATMENT_APPLICATION_OR_STUDY_FOR_TREATMENT_BY = (
+    "subject_of_treatment_application_or_study_for_treatment_by"
+  )
+  SUPERCLASS_OF = "superclass_of"
+  TARGET_FOR = "target_for"
+  TAXON_OF = "taxon_of"
+  TEMPORALLY_RELATED_TO = "temporally_related_to"
+  TESTED_BY_CLINICAL_TRIALS_OF = "tested_by_clinical_trials_of"
+  TESTED_BY_PRECLINICAL_TRIALS_OF = "tested_by_preclinical_trials_of"
+  TRANSCRIBED_FROM = "transcribed_from"
+  TRANSCRIBED_TO = "transcribed_to"
+  TRANSLATES_TO = "translates_to"
+  TRANSLATION_OF = "translation_of"
+  TREATED_BY = "treated_by"
+  TREATED_IN_STUDIES_BY = "treated_in_studies_by"
+  TREATMENT_APPLICATIONS_FROM = "treatment_applications_from"
+  TREATS = "treats"
+  TREATS_OR_APPLIED_OR_STUDIED_TO_TREAT = "treats_or_applied_or_studied_to_treat"
+  VARIANT_PART_OF = "variant_part_of"
+  XENOLOGOUS_TO = "xenologous_to"
+
+
+class Qualifiers(str, Enum):
+  ANATOMICAL_CONTEXT_QUALIFIER = "anatomical_context_qualifier"
+  ASPECT_QUALIFIER = "aspect_qualifier"
+  CAUSAL_MECHANISM_QUALIFIER = "causal_mechanism_qualifier"
+  CONTEXT_QUALIFIER = "context_qualifier"
+  DERIVATIVE_QUALIFIER = "derivative_qualifier"
+  DIRECTION_QUALIFIER = "direction_qualifier"
+  DISEASE_CONTEXT_QUALIFIER = "disease_context_qualifier"
+  FORM_OR_VARIANT_QUALIFIER = "form_or_variant_qualifier"
+  FREQUENCY_QUALIFIER = "frequency_qualifier"
+  OBJECT_ASPECT_QUALIFIER = "object_aspect_qualifier"
+  OBJECT_CONTEXT_QUALIFIER = "object_context_qualifier"
+  OBJECT_DERIVATIVE_QUALIFIER = "object_derivative_qualifier"
+  OBJECT_DIRECTION_QUALIFIER = "object_direction_qualifier"
+  OBJECT_FORM_OR_VARIANT_QUALIFIER = "object_form_or_variant_qualifier"
+  OBJECT_PART_QUALIFIER = "object_part_qualifier"
+  OBJECT_SPECIALIZATION_QUALIFIER = "object_specialization_qualifier"
+  ONSET_QUALIFIER = "onset_qualifier"
+  PART_QUALIFIER = "part_qualifier"
+  POPULATION_CONTEXT_QUALIFIER = "population_context_qualifier"
+  QUALIFIED_PREDICATE = "qualified_predicate"
+  QUALIFIER = "qualifier"
+  SEVERITY_QUALIFIER = "severity_qualifier"
+  SEX_QUALIFIER = "sex_qualifier"
+  SPECIALIZATION_QUALIFIER = "specialization_qualifier"
+  SPECIES_CONTEXT_QUALIFIER = "species_context_qualifier"
+  STAGE_QUALIFIER = "stage_qualifier"
+  STATEMENT_QUALIFIER = "statement_qualifier"
+  SUBJECT_ASPECT_QUALIFIER = "subject_aspect_qualifier"
+  SUBJECT_CONTEXT_QUALIFIER = "subject_context_qualifier"
+  SUBJECT_DERIVATIVE_QUALIFIER = "subject_derivative_qualifier"
+  SUBJECT_DIRECTION_QUALIFIER = "subject_direction_qualifier"
+  SUBJECT_FORM_OR_VARIANT_QUALIFIER = "subject_form_or_variant_qualifier"
+  SUBJECT_PART_QUALIFIER = "subject_part_qualifier"
+  SUBJECT_SPECIALIZATION_QUALIFIER = "subject_specialization_qualifier"
+  TEMPORAL_CONTEXT_QUALIFIER = "temporal_context_qualifier"
+  TEMPORAL_INTERVAL_QUALIFIER = "temporal_interval_qualifier"