synkit 1.6.5__py3-none-win_amd64.whl

synkit/Chem/Mapper/solvers/native/cpp/src/symmetry/vendor/nauty/naututil.h

@@ -0,0 +1,355 @@
+/*****************************************************************************
+* This is the header file for version 2.9.3 of naututil.c.       *
+* naututil.h.  Generated from naututil-h.in by configure.
+*****************************************************************************/
+
+/* The parts between the ==== lines are modified by configure when
+creating naututil.h out of naututil-h.in.  If configure is not being
+used, it is necessary to check they are correct.
+====================================================================*/
+
+#ifndef  _NAUTUTIL_H_    /* only process this file once */
+#define  _NAUTUTIL_H_
+
+/* Check whether various headers are available */
+
+#define HAVE_ISATTY  1     /* if isatty() is available */
+#define HAVE_TIMES  1      /* if times() is available */
+#define HAVE_TIME  1      /* if time() is available */
+#define HAVE_GETRUSAGE 1  /* if getrusage() is available */
+#define HAVE_GETTIMEOFDAY  1  /* if gettimeofday() */
+#define GETTIMEOFDAY_DECL  1  /* gettimeofday() declared */
+#define HAVE_CLOCK_GETTIME  1  /* if clock_gettime() */
+#define HAVE_CLOCK  1  /* if clock() is available */
+
+/*==================================================================*/
+
+/*****************************************************************************
+*                                                                            *
+*   Copyright (1984-) Brendan McKay.                                         *
+*   Subject to the conditions and disclaimers in the file COPYRIGHT.         *
+*                                                                            *
+*   CHANGE HISTORY                                                           *
+*       10-Nov-87 : final changes for version 1.2                            *
+*        5-Dec-87 : changes for version 1.3 :                                *
+*                   - added declarations of readinteger() and readstring()   *
+*                   - added definition of DEFEXT : default file-name         *
+*                     extension for dreadnaut input files                    *
+*       28-Sep-88 : changes for version 1.4 :                                *
+*                   - added support for PC Turbo C                           *
+*       29-Nov-88 : - added getc macro for AZTEC C on MAC                    *
+*       23-Mar-89 : changes for version 1.5 :                                *
+*                   - added DREADVERSION macro                               *
+*                   - added optional ANSI function prototypes                *
+*                   - changed file name to naututil.h                        *
+*                   - moved ALLOCS to nauty.h and defined DYNALLOC           *
+*       25-Mar-89 : - added declaration of twopaths()                        *
+*       29-Mar-89 : - added declaration of putmapping()                      *
+*        4-Apr-89 : - added declarations of triples, quadruples, adjtriang   *
+*                   - only define ERRFILE if not in nauty.h                  *
+*       25-Apr-89 : - added declarations of cellquads,distances,getbigcells  *
+*       26-Apr-89 : - added declarations of indsets,cliques,cellquins        *
+*                   - removed declarations of ptncode and equitable          *
+*       27-Apr-89 : - added declaration of putquotient                       *
+*       18-Aug-89 : - added new arg to putset, and changed mathon            *
+*        2-Mar-90 : - added declarations of celltrips, cellcliq, cellind     *
+*                   - changed declarations to use EXTPROC                    *
+*       12-Mar-90 : - added changes for Cray version                         *
+*       20-Mar-90 : - added changes for THINK version                        *
+*       27-Mar-90 : - split SYS_MSDOS into SYS_PCMS4 and SYS_PCMS5           *
+*       13-Oct-90 : changes for version 1.6 :                                *
+*                   - changed CPUTIME to use HZ on Unix for times()          *
+*       14-Oct-90 : - added SYS_APOLLO variant                               *
+*       19-Oct-90 : - changed CPUTIME defs for BSDUNIX to avoid conficting   *
+*                     declarations of size_t and ptrdiff_t in gcc            *
+*       27-Aug-92 : changes for version 1.7 :                                *
+*                   - added SYS_IBMC variant                                 *
+*                   - removed workaround for bad gcc installation            *
+*        5-Jun-93 : changes for version 1.8 :                                *
+*                   - changed CRAY version of CPUTIME to use CLK_TCK         *
+*                     if HZ could not be found (making 1.7+)                 *
+*       30-Jul-93 : - added SYS_ALPHA variant                                *
+*       17-Sep-93 : changes for version 1.9 :                                *
+*                   - declared adjacencies()                                 *
+*       24-Feb-94 : changes for version 1.10 :                               *
+*                   - added version SYS_AMIGAAZT (making 1.9+)               *
+*       19-Apr-95 : - added C++ prototype wrapper                            *
+*        6-Mar-96 : - added SYS_ALPHA32 code                                 *
+*       23-Jul-96 : changes for version 2.0 :                                *
+*                   - changed readstring() declaration                       *
+*                   - removed DYNALLOC definition                            *
+*                   - added sublabel() definition                            *
+*       15-Aug-96 : - added sethash() definition                             *
+*       30-Aug-96 : - added KRAN and D. Knuth routines                       *
+*       16-Sep-96 : - fixed the above!                                       *
+*        7-Feb-96 : - declared nautinv_null() and setnbhd()                  *
+*        4-Sep-97 : - arg of time() is type time_t*, was long*               *
+*       22-Sep-97 : - defined fileno() and time_t for SYS_PCTURBO            *
+*       10-Dec-97 : - revised KRAN for new rng.c from Knuth                  *
+*       18-Feb-98 : - changed time() to time_t for Unix                      *
+*       21-Oct-98 : - changed short to shortish as needed                    *
+*        9-Jan-00 : - declared nautinv_check() and naututil_check()          *
+*       16-Nov-00 : - applied changes logged in nauty.h                      *
+*       22-Apr-01 : changes for version 2.1 :                                *
+*                   - prototypes for nautinv.c are now in nautinv.h          *
+*                   - CPUTIME for UNIX uses CLK_TCK (needs revision!)        *
+*        2-Jun-01 : - prototype for converse()                               *
+*       18-Oct-01 : - complete revision; sysdeps in separate files           *
+*       28-Aug-02 : changes for version 2.2 :                                *
+*                   - revised for autoconf                                   *
+*       17-Nov-02 : added explicit "extern" where it was implicit before     *
+*       11-Apr-02 : added rangraph2()                                        *
+*       10-Sep-07 : Define CPUTIME=0.0 for hosts that don't provide it       *
+*        4-Nov-09 : added readgraph_sg(), putgraph_sg(), putcanon_sg()       *
+*       10-Nov-09 : removed types shortish and permutation                   *
+*       14-Nov-09 : added relabel_sg(), copy_sg(), putdegs_sg(),             *
+*                    sublabel_sg()                                           *
+*       19-Nov-09 : added individualise()                                    *
+*       20-Nov-09 : added hashgraph_sg(), listhash(), hashgraph()            *
+*       19-Dec-09 : added ranreg(), rangraph2_sg()                           *
+*        5-Jun-10 : added mathon_sg() and converse_sg()                      *
+*       10-Jun-10 : added putquotient_sg() and complement_sg()               *
+*       15-Jan-12 : added TLS_ATTR to static declarations                    *
+*        3-Mar-12 : added putorbitsplus() and putset_firstbold()             *
+*       17-Mar-12 : include naurng.h and remove redundant lines              *
+*        1-Nov-15 : changes for version 2.6 :                                *
+*                 - prototypes for putdegseq(), putdegseq_sg()               *
+*       17-Dec-15 : prototype for readgraph_swg()                            *
+*        6-Apr-16 : prototype for countcells()                               *
+*       27-Aug-16 : added REALTIMEDEFS and NAUTYREALTIME                     *
+*       14-Oct-22 : prototypes for settolist() and listtoset()               *
+*        8-Apr-24 : prototypes for numloops() and numloops_sg()              *
+*        9-Mar-25 : changed type of setsize() and setinter()                 *
+*                                                                            *
+* ++++++ This file is automatically generated, don't edit it by hand! ++++++
+*                                                                            *
+*****************************************************************************/
+
+#include "nauty.h"              /* which includes stdio.h */
+#include "nausparse.h"
+#include "naurng.h"
+/* At this point we can assume that <sys/types.h>, <unistd.h>, <stddef.h>,
+   <stdlib.h>, <string.h> or <strings.h> and <malloc.h> if necessary have
+   been included if they exist. */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+void complement(graph*,int,int);
+void converse(graph*,int,int);
+void converse_sg(sparsegraph*, sparsegraph*);
+void copycomment(FILE*,FILE*,int);
+void complement_sg(sparsegraph*, sparsegraph*);
+int countcells(int*,int,int);
+void flushline(FILE*);
+void fixit(int*,int*,int*,int,int);
+int getint(FILE*);
+int getint_sl(FILE*);
+long hash(set*,long,int);
+long hashgraph(graph*,int,int,long);
+long hashgraph_sg(sparsegraph*,long);
+void individualise(int*,int*,int,int,int*,int*,int);
+long listhash(int*,int,long);
+void listtoset(int*,int,set*,int);
+void mathon(graph*,int,int,graph*,int,int);
+void mathon_sg(sparsegraph*,sparsegraph*);
+void naututil_check(int,int,int,int);
+void naututil_freedyn(void);
+int numloops(graph*,int,int);
+int numloops_sg(sparsegraph*);
+void putcanon(FILE*,int*,graph*,int,int,int);
+void putcanon_sg(FILE*,int*,sparsegraph*,int);
+void putdegs(FILE*,graph*,int,int,int);
+void putdegs_sg(FILE*,sparsegraph*,int);
+void putdegseq(FILE*,graph*,int,int,int);
+void putdegseq_sg(FILE*,sparsegraph*,int);
+void putgraph(FILE*,graph*,int,int,int);
+void putgraph_sg(FILE*,sparsegraph*,int);
+void putmapping(FILE*,int*,int,int*,int,int,int);
+void putorbits(FILE*,int*,int,int);
+void putorbitsplus(FILE*,int*,int,int);
+void putptn(FILE*,int*,int*,int,int,int);
+void putquotient(FILE*,graph*,int*,int*,int,int,int,int);
+void putquotient_sg(FILE*,sparsegraph*,int*,int*,int,int);
+void putset(FILE*,set*,int*,int,int,boolean);
+void putset_firstbold(FILE*,set*,int*,int,int,boolean);
+void rangraph(graph*,boolean,int,int,int);
+void rangraph2(graph*,boolean,int,int,int,int);
+void rangraph2_sg(sparsegraph*,boolean,int,int,int);
+void ranreg_sg(sparsegraph *sg, int degree, int n);
+void ranperm(int*,int);
+boolean readcoded(FILE*,boolean,boolean,graph**,
+                sparsegraph*,boolean*,int*);
+void readgraph(FILE*,graph*,boolean,boolean,boolean,int,int,int);
+void readgraph_sg(FILE*,sparsegraph*,boolean,boolean,int,int);
+void readgraph_swg(FILE*,sparsegraph*,boolean,boolean,int,int);
+boolean readinteger(FILE*,int*);
+boolean readinteger_sl(FILE*,int*);
+void readperm(FILE*,int*,boolean,int);
+void readptn(FILE*,int*,int*,int*,boolean,int);
+void readvperm(FILE*,int*,boolean,int,int*);
+boolean readstring(FILE*,char*,int);
+void relabel(graph*,int*,int*,graph*,int,int);
+void relabel_sg(sparsegraph*,int*,int*,sparsegraph*);
+long sethash(set*,int,long,int);
+long long setinter(set*,set*,int);
+long long setsize(set*,int);
+int settolist(set *set1, int m, int *list);
+void sublabel(graph*,int*,int,graph*,int,int);
+void sublabel_sg(sparsegraph*,int*,int,sparsegraph*);
+int subpartition(int*,int*,int,int*,int);
+void unitptn(int*,int*,int*,int);
+
+#ifdef __cplusplus
+}
+#endif
+
+#define MAXREG 8    /* Used to limit ranreg_sg() degree */
+
+#define PROMPTFILE stdout    /* where to write prompts */
+#ifndef ERRFILE
+#define ERRFILE stderr       /* where to write error messages */
+#endif
+#define MAXIFILES 10         /* how many input files can be open at once */
+#define EXIT exit(0)         /* how to stop normally */
+#define DEFEXT ".dre"        /* extension for dreadnaut files */
+
+/*************************************************************************
+ The following macros may represent differences between system.  This
+ file contains the UNIX/POSIX editions.  For other systems, a separate
+ file of definitions is read in first.  That file should define the
+ variables NAUTY_*_DEFINED for sections that are to replace the UNIX
+ versions.  See the provided examples for more details.
+
+ If your system does not have a predefined macro you can use to cause
+ a definitions file to be read, you have to make up one and arrange for
+ it to be defined when this file is read.
+
+ The system-dependent files can also redefine the macros just ahead of
+ this comment.
+**************************************************************************/
+
+#ifdef __weirdmachine__
+#include "weird.h"  /* Some weird machine (ILLUSTRATION ONLY) */
+#endif
+
+/*************************************************************************/
+
+#ifndef NAUTY_PROMPT_DEFINED
+#if HAVE_ISATTY
+#define DOPROMPT(fp) (isatty(fileno(fp)) && isatty(fileno(PROMPTFILE)))
+#else
+#define DOPROMPT(fp) (curfile==0)
+#endif
+#endif /*NAUTY_PROMPT_DEFINED*/
+
+/*************************************************************************/
+
+#ifndef NAUTY_OPEN_DEFINED
+#define OPENOUT(fp,name,append) fp = fopen(name,(append)?"a":"w")
+#endif /*NAUTY_OPEN_DEFINED*/
+
+/*************************************************************************/
+
+#if !defined(NAUTY_CPU_DEFINED) && HAVE_CLOCK
+#include <time.h>
+#ifdef CLOCKS_PER_SEC
+#define CPUDEFS
+#define CPUTIME ((double)clock()/CLOCKS_PER_SEC)
+#define NAUTY_CPU_DEFINED
+#endif
+#endif
+
+#if !defined(NAUTY_CPU_DEFINED) && HAVE_TIMES
+#include <sys/times.h>
+#define CPUDEFS static TLS_ATTR struct tms timebuffer;
+#ifndef CLK_TCK
+#include <time.h>
+#endif
+#if !defined(CLK_TCK) && defined(_SC_CLK_TCK)
+#define CLK_TCK sysconf(_SC_CLK_TCK)
+#endif
+#ifndef CLK_TCK
+#define CLK_TCK 60
+#endif
+#define CPUTIME (times(&timebuffer),\
+              (double)(timebuffer.tms_utime + timebuffer.tms_stime) / CLK_TCK)
+#define NAUTY_CPU_DEFINED
+#endif
+
+#if !defined(NAUTY_CPU_DEFINED) && HAVE_GETRUSAGE
+#include <sys/time.h>
+#include <sys/resource.h>
+#define CPUDEFS struct rusage ruse;
+#define CPUTIME (getrusage(RUSAGE_SELF,&ruse),\
+  ruse.ru_utime.tv_sec + ruse.ru_stime.tv_sec + \
+  1e-6 * (ruse.ru_utime.tv_usec + ruse.ru_stime.tv_usec))
+#define NAUTY_CPU_DEFINED
+#endif
+
+#ifndef NAUTY_CPU_DEFINED
+#define CPUDEFS
+#define CPUTIME 0.0
+#endif
+
+#if HAVE_GETTIMEOFDAY
+#include <sys/time.h>
+#if !GETTIMEOFDAY_DECL
+int gettimeofday(struct timeval *tv, void *tz);
+#endif
+#endif
+
+/*************************************************************************/
+
+/* INITSEED is present for backwards compatibility. For new code,
+   initialise the seed using INITRANBYTIME defined in naurng.h. */
+
+#ifndef NAUTY_SEED_DEFINED
+#if HAVE_GETTIMEOFDAY
+#define INITSEED \
+{struct timeval nauty_tv; \
+ gettimeofday(&nauty_tv,NULL); \
+ seed = ((nauty_tv.tv_sec<<10) + (nauty_tv.tv_usec>>10)) & 0x7FFFFFFFL;}
+#else
+#if HAVE_TIME
+#include <time.h>
+#define INITSEED  seed = ((time((time_t*)NULL)<<1) | 1) & 0x7FFFFFFFL
+#endif
+#endif
+#endif /*NAUTY_SEED_DEFINED*/
+
+/*************************************************************************/
+
+#if !defined(NAUTY_REALTIME_DEFINED) && HAVE_GETTIMEOFDAY
+#define REALTIMEDEFS struct timeval nauty_rtv;
+#define NAUTYREALTIME (gettimeofday(&nauty_rtv,NULL), \
+   (double)(nauty_rtv.tv_sec + 1e-6*nauty_rtv.tv_usec))
+#define NAUTY_REALTIME_DEFINED
+#endif
+
+#if !defined(NAUTY_REALTIME_DEFINED) && HAVE_CLOCK_GETTIME
+#include <time.h>
+#ifdef CLOCK_REALTIME
+#define REALTIMEDEFS struct timespec nauty_rtv;
+#define NAUTYREALTIME (clock_gettime(CLOCK_REALTIME,&nauty_rtv), \
+   (double)(nauty_rtv.tv_sec + 1e-9*nauty_rtv.tv_nsec))
+#define NAUTY_REALTIME_DEFINED 
+#endif
+#endif
+
+#if !defined(NAUTY_REALTIME_DEFINED) && HAVE_TIME
+#include <time.h>
+#define REALTIMEDEFS
+#define NAUTYREALTIME ((double)time(NULL))
+#define NAUTY_REALTIME_DEFINED
+#endif
+
+#ifndef NAUTY_REALTIME_DEFINED
+#define REALTIMEDEFS
+#define NAUTYREALTIME 0.0
+#endif
+
+#endif 
+
+/* ++++++ This file is automatically generated, don't edit it by hand! ++++++ */