synapse-sdk 1.0.0a71__py3-none-any.whl → 1.0.0a72__py3-none-any.whl

synapse_sdk/plugins/categories/pre_annotation/actions/to_task.py

@@ -67,9 +67,11 @@ class ToTaskParams(BaseModel):
         name (str): The name of the action.
         description (str | None): The description of the action.
         project (int): The project ID.
+        agent (int): The agent ID.
         task_filters (dict): The filters of tasks.
         method (AnnotationMethod): The method of annotation.
         target_specification_name (str | None): The name of the target specification.
+        model (int): The model ID.
         pre_processor (int | None): The pre processor ID.
         pre_processor_params (dict): The params of the pre processor.
     """
@@ -77,9 +79,11 @@ class ToTaskParams(BaseModel):
     name: Annotated[str, AfterValidator(non_blank)]
     description: Optional[str] = None
     project: int
+    agent: int
     task_filters: Dict[str, Any]
     method: Optional[AnnotationMethod] = None
     target_specification_name: Optional[str] = None
+    model: Optional[int] = None
     pre_processor: Optional[int] = None
     pre_processor_params: Dict[str, Any]
 

synapse_sdk/utils/converters/__init__.py

@@ -48,7 +48,7 @@ class BaseConverter:
         else:
             required_dirs = {
                 'json': os.path.join(self.root_dir, 'json'),
-                'original_file': os.path.join(self.root_dir, 'original_file'),
+                'original_files': os.path.join(self.root_dir, 'original_files'),
             }
             self._validate_required_dirs(required_dirs)
             splits['root'] = self.root_dir
@@ -60,10 +60,10 @@ class BaseConverter:
         if split:
             split_dir = os.path.join(self.root_dir, split)
             self.json_dir = os.path.join(split_dir, 'json')
-            self.original_file_dir = os.path.join(split_dir, 'original_file')
+            self.original_file_dir = os.path.join(split_dir, 'original_files')
         else:
             self.json_dir = os.path.join(self.root_dir, 'json')
-            self.original_file_dir = os.path.join(self.root_dir, 'original_file')
+            self.original_file_dir = os.path.join(self.root_dir, 'original_files')
 
 
 class FromDMConverter(BaseConverter):
@@ -185,7 +185,7 @@ class ToDMConverter(BaseConverter):
             for split, img_dict in self.converted_data.items():
                 split_dir = os.path.join(output_dir, split)
                 json_dir = os.path.join(split_dir, 'json')
-                original_file_dir = os.path.join(split_dir, 'original_file')
+                original_file_dir = os.path.join(split_dir, 'original_files')
                 self.ensure_dir(json_dir)
                 self.ensure_dir(original_file_dir)
                 for img_filename, (dm_json, img_src_path) in img_dict.items():
@@ -196,7 +196,7 @@ class ToDMConverter(BaseConverter):
                         shutil.copy(img_src_path, os.path.join(original_file_dir, img_filename))
         else:
             json_dir = os.path.join(output_dir, 'json')
-            original_file_dir = os.path.join(output_dir, 'original_file')
+            original_file_dir = os.path.join(output_dir, 'original_files')
             self.ensure_dir(json_dir)
             self.ensure_dir(original_file_dir)
             for img_filename, (dm_json, img_src_path) in self.converted_data.items():
@@ -205,4 +205,5 @@ class ToDMConverter(BaseConverter):
                     json.dump(dm_json, jf, indent=2, ensure_ascii=False)
                 if img_src_path and os.path.exists(img_src_path):
                     shutil.copy(img_src_path, os.path.join(original_file_dir, img_filename))
+
         print(f'[DM] Data exported to {output_dir}')

synapse_sdk/utils/converters/coco/from_dm.py

@@ -11,7 +11,7 @@ from tqdm import tqdm
 from synapse_sdk.utils.converters import FromDMConverter
 
 
-class DMToCOCOConverter(FromDMConverter):
+class FromDMToCOCOConverter(FromDMConverter):
     """Convert DM (Data Manager) format annotations to COCO format.
     Designed for easy future extensibility to handle various data types.
     """
@@ -242,11 +242,11 @@ class DMToCOCOConverter(FromDMConverter):
             for split, coco_data in self.converted_data.items():
                 split_output_dir = os.path.join(output_dir, split)
                 self._save_annotations_and_images(
-                    coco_data, split_output_dir, os.path.join(self.root_dir, split, 'original_file')
+                    coco_data, split_output_dir, os.path.join(self.root_dir, split, 'original_files')
                 )
         else:
             self._save_annotations_and_images(
-                self.converted_data, output_dir, os.path.join(self.root_dir, 'original_file')
+                self.converted_data, output_dir, os.path.join(self.root_dir, 'original_files')
             )
 
     def _save_annotations_and_images(self, coco_data, output_dir, original_file_dir):

synapse_sdk/utils/converters/yolo/from_dm.py

@@ -0,0 +1,296 @@
+import json
+import os
+import shutil
+from glob import glob
+from typing import Any, Dict, List, Optional, Union
+
+from PIL import Image
+
+from synapse_sdk.utils.converters import FromDMConverter
+
+
+class FromDMToYOLOConverter(FromDMConverter):
+    """Convert DM dataset format to YOLO format."""
+
+    IMG_EXTENSIONS = ['.jpg', '.jpeg', '.png', '.bmp']
+
+    def __init__(self, root_dir: str, is_categorized_dataset: bool = False):
+        super().__init__(root_dir, is_categorized_dataset)
+        self.class_names: List[str] = []
+        self.class_map: Dict[str, int] = {}
+        self.dataset_yaml_content: str = ''
+
+    @staticmethod
+    def get_all_classes(list_of_dirs: List[str]) -> List[str]:
+        """Collect all unique class names from all splits or the root."""
+        classes = set()
+        for d in list_of_dirs:
+            if not d or not os.path.isdir(d):
+                continue
+            json_dir = os.path.join(d, 'json') if os.path.isdir(os.path.join(d, 'json')) else d
+            for jfile in glob(os.path.join(json_dir, '*.json')):
+                with open(jfile, encoding='utf-8') as jf:
+                    data = json.load(jf)
+                for img_ann in data['images']:
+                    for k in ['bounding_box', 'polygon', 'keypoint']:
+                        if k in img_ann:
+                            for ann in img_ann[k]:
+                                classes.add(ann['classification'])
+        return sorted(list(classes))
+
+    @staticmethod
+    def get_image_size(image_path: str):
+        with Image.open(image_path) as img:
+            return img.size
+
+    @staticmethod
+    def polygon_to_bbox(polygon: list):
+        """Convert polygon points to bounding box [cx, cy, w, h]."""
+        if not polygon or len(polygon) == 0:
+            return None
+        xs = [p[0] for p in polygon]
+        ys = [p[1] for p in polygon]
+        x_min, y_min = min(xs), min(ys)
+        x_max, y_max = max(xs), max(ys)
+        cx = (x_min + x_max) / 2
+        cy = (y_min + y_max) / 2
+        w = x_max - x_min
+        h = y_max - y_min
+        return [cx, cy, w, h]
+
+    @staticmethod
+    def keypoints_to_yolo_string(keypoints: list, width: int, height: int):
+        """Convert keypoints to normalized YOLO keypoint format string (x1 y1 v1 x2 y2 v2 ...)."""
+        kp_strs = []
+        for kp in keypoints:
+            # kp: [x, y, visible]
+            x, y, v = kp
+            x = x / width
+            y = y / height
+            kp_strs.extend([f'{x:.6f}', f'{y:.6f}', str(v)])
+        return ' '.join(kp_strs)
+
+    def _convert_split_dir(self, split_dir: str, split_name: str) -> List[Dict[str, Any]]:
+        """Convert one split folder to YOLO format."""
+        if not self.class_map:
+            raise ValueError('class_map is not initialized. Ensure get_all_classes() is called before this method.')
+
+        json_dir = os.path.join(split_dir, 'json')
+        img_dir = os.path.join(split_dir, 'original_files')
+        entries = []
+        for jfile in glob(os.path.join(json_dir, '*.json')):
+            base = os.path.splitext(os.path.basename(jfile))[0]
+            found_img = None
+            for ext in self.IMG_EXTENSIONS:
+                img_path = os.path.join(img_dir, base + ext)
+                if os.path.exists(img_path):
+                    found_img = img_path
+                    break
+            if not found_img:
+                print(f'[{split_name}] Image for {base} not found, skipping.')
+                continue
+            width, height = self.get_image_size(found_img)
+            with open(jfile, encoding='utf-8') as jf:
+                data = json.load(jf)
+            img_ann = data['images'][0]
+            label_lines = []
+
+            # bbox
+            if 'bounding_box' in img_ann:
+                for box in img_ann['bounding_box']:
+                    cidx = self.class_map[box['classification']]
+                    x, y, w, h = box['data']
+                    cx = x + w / 2
+                    cy = y + h / 2
+                    cx /= width
+                    cy /= height
+                    w /= width
+                    h /= height
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f}')
+
+            # polygon
+            if 'polygon' in img_ann:
+                for poly in img_ann['polygon']:
+                    cidx = self.class_map[poly['classification']]
+                    bbox = self.polygon_to_bbox(poly['data'])
+                    if bbox is None:
+                        print(f'[{split_name}] Polygon for {base} is empty, skipping this polygon.')
+                        continue
+                    cx, cy, w, h = bbox
+                    cx /= width
+                    cy /= height
+                    w /= width
+                    h /= height
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f}')
+
+            # keypoint
+            if 'keypoint' in img_ann:
+                for kp in img_ann['keypoint']:
+                    cidx = self.class_map[kp['classification']]
+                    # Assume bounding box exists for keypoint, or fallback to full image
+                    if 'bounding_box' in kp:
+                        x, y, w, h = kp['bounding_box']
+                        cx = x + w / 2
+                        cy = y + h / 2
+                        cx /= width
+                        cy /= height
+                        w /= width
+                        h /= height
+                    else:
+                        # fallback to the whole image
+                        cx, cy, w, h = 0.5, 0.5, 1.0, 1.0
+                    kp_str = self.keypoints_to_yolo_string(kp['data'], width, height)
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f} {kp_str}')
+
+            entries.append({
+                'img_path': found_img,
+                'img_name': os.path.basename(found_img),
+                'label_name': base + '.txt',
+                'label_lines': label_lines,
+            })
+        return entries
+
+    def _convert_root_dir(self) -> List[Dict[str, Any]]:
+        """Convert non-categorized dataset to YOLO format."""
+        json_dir = os.path.join(self.root_dir, 'json')
+        img_dir = os.path.join(self.root_dir, 'original_files')
+        entries = []
+        for jfile in glob(os.path.join(json_dir, '*.json')):
+            base = os.path.splitext(os.path.basename(jfile))[0]
+            found_img = None
+            for ext in self.IMG_EXTENSIONS:
+                img_path = os.path.join(img_dir, base + ext)
+                if os.path.exists(img_path):
+                    found_img = img_path
+                    break
+            if not found_img:
+                print(f'[single] Image for {base} not found, skipping.')
+                continue
+            width, height = self.get_image_size(found_img)
+            with open(jfile, encoding='utf-8') as jf:
+                data = json.load(jf)
+            img_ann = data['images'][0]
+            label_lines = []
+
+            # bbox
+            if 'bounding_box' in img_ann:
+                for box in img_ann['bounding_box']:
+                    cidx = self.class_map[box['classification']]
+                    x, y, w, h = box['data']
+                    cx = x + w / 2
+                    cy = y + h / 2
+                    cx /= width
+                    cy /= height
+                    w /= width
+                    h /= height
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f}')
+
+            # polygon
+            if 'polygon' in img_ann:
+                for poly in img_ann['polygon']:
+                    cidx = self.class_map[poly['classification']]
+                    bbox = self.polygon_to_bbox(poly['data'])
+                    if bbox is None:
+                        print(f'[single] Polygon for {base} is empty, skipping this polygon.')
+                        continue
+                    cx, cy, w, h = bbox
+                    cx /= width
+                    cy /= height
+                    w /= width
+                    h /= height
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f}')
+
+            # keypoint
+            if 'keypoint' in img_ann:
+                for kp in img_ann['keypoint']:
+                    cidx = self.class_map[kp['classification']]
+                    if 'bounding_box' in kp:
+                        x, y, w, h = kp['bounding_box']
+                        cx = x + w / 2
+                        cy = y + h / 2
+                        cx /= width
+                        cy /= height
+                        w /= width
+                        h /= height
+                    else:
+                        cx, cy, w, h = 0.5, 0.5, 1.0, 1.0
+                    kp_str = self.keypoints_to_yolo_string(kp['data'], width, height)
+                    label_lines.append(f'{cidx} {cx:.6f} {cy:.6f} {w:.6f} {h:.6f} {kp_str}')
+
+            entries.append({
+                'img_path': found_img,
+                'img_name': os.path.basename(found_img),
+                'label_name': base + '.txt',
+                'label_lines': label_lines,
+            })
+        return entries
+
+    def convert(self) -> Union[Dict[str, List[Dict[str, Any]]], List[Dict[str, Any]]]:
+        """Convert DM format to YOLO format (categorized split or not).
+
+        Returns:
+            - If categorized: dict {split: list of entries}
+            - If not: list of entries
+        """
+        # Prepare dataset.yaml content (for save_to_folder)
+        yaml_lines = [
+            'path: ' + self.root_dir,
+        ]
+
+        if self.is_categorized_dataset:
+            splits = self._validate_splits(required_splits=['train', 'valid'], optional_splits=['test'])
+            self.class_names = self.get_all_classes(list(splits.values()))
+            self.class_map = {name: idx for idx, name in enumerate(self.class_names)}
+            result = {}
+            for split, split_dir in splits.items():
+                result[split] = self._convert_split_dir(split_dir, split)
+            self.converted_data = result
+
+            yaml_lines.append('train: train/images')
+            yaml_lines.append('val: valid/images')
+            if 'test' in splits:
+                yaml_lines.append('test: test/images')
+        else:
+            self._validate_splits(required_splits=[], optional_splits=[])
+            self.class_names = self.get_all_classes([self.root_dir])
+            self.class_map = {name: idx for idx, name in enumerate(self.class_names)}
+            result = self._convert_root_dir()
+            self.converted_data = result
+
+        yaml_lines += ['', f'nc: {len(self.class_names)}', f'names: {self.class_names}', '']
+        self.dataset_yaml_content = '\n'.join(yaml_lines)
+        return result
+
+    def save_to_folder(self, output_dir: Optional[str] = None) -> None:
+        """Save converted YOLO data to the specified folder."""
+        output_dir = output_dir or self.root_dir
+        self.ensure_dir(output_dir)
+        if self.converted_data is None:
+            self.converted_data = self.convert()
+
+        if self.is_categorized_dataset:
+            for split, entries in self.converted_data.items():
+                split_imgs = os.path.join(output_dir, split, 'images')
+                split_labels = os.path.join(output_dir, split, 'labels')
+                self.ensure_dir(split_imgs)
+                self.ensure_dir(split_labels)
+                for entry in entries:
+                    shutil.copy(entry['img_path'], os.path.join(split_imgs, entry['img_name']))
+                    with open(os.path.join(split_labels, entry['label_name']), 'w', encoding='utf-8') as f:
+                        f.write('\n'.join(entry['label_lines']))
+        else:
+            imgs_dir = os.path.join(output_dir, 'images')
+            labels_dir = os.path.join(output_dir, 'labels')
+            self.ensure_dir(imgs_dir)
+            self.ensure_dir(labels_dir)
+            for entry in self.converted_data:
+                shutil.copy(entry['img_path'], os.path.join(imgs_dir, entry['img_name']))
+                with open(os.path.join(labels_dir, entry['label_name']), 'w', encoding='utf-8') as f:
+                    f.write('\n'.join(entry['label_lines']))
+
+        with open(os.path.join(output_dir, 'dataset.yaml'), 'w', encoding='utf-8') as f:
+            f.write(self.dataset_yaml_content)
+        with open(os.path.join(output_dir, 'classes.txt'), 'w', encoding='utf-8') as f:
+            for c in self.class_names:
+                f.write(f'{c}\n')
+        print(f'YOLO data exported to {output_dir}')

{synapse_sdk-1.0.0a71.dist-info → synapse_sdk-1.0.0a72.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: synapse-sdk
-Version: 1.0.0a71
+Version: 1.0.0a72
 Summary: synapse sdk
 Author-email: datamaker <developer@datamaker.io>
 License: MIT

{synapse_sdk-1.0.0a71.dist-info → synapse_sdk-1.0.0a72.dist-info}/RECORD

@@ -153,7 +153,7 @@ synapse_sdk/plugins/categories/post_annotation/templates/plugin/post_annotation.
 synapse_sdk/plugins/categories/pre_annotation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 synapse_sdk/plugins/categories/pre_annotation/actions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 synapse_sdk/plugins/categories/pre_annotation/actions/pre_annotation.py,sha256=6ib3RmnGrjpsQ0e_G-mRH1lfFunQ3gh2M831vuDn7HU,344
-synapse_sdk/plugins/categories/pre_annotation/actions/to_task.py,sha256=JlFO2vydZ_rgLq_6lZc7-TvmVHGGZLEXkTrVR_TfQXM,23214
+synapse_sdk/plugins/categories/pre_annotation/actions/to_task.py,sha256=7w7CLHrsOjVC_qBjaPA1Vz2L0jyRFNsg05pS72cAr7Y,23331
 synapse_sdk/plugins/categories/pre_annotation/templates/config.yaml,sha256=4SKJe2gF8UCi3oD0kV8B4M2MkYcosz5GZzzAjAg3slc,508
 synapse_sdk/plugins/categories/pre_annotation/templates/plugin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 synapse_sdk/plugins/categories/pre_annotation/templates/plugin/pre_annotation.py,sha256=HBHxHuv2gMBzDB2alFfrzI_SZ1Ztk6mo7eFbR5GqHKw,106
@@ -192,10 +192,12 @@ synapse_sdk/utils/http.py,sha256=yRxYfru8tMnBVeBK-7S0Ga13yOf8oRHquG5e8K_FWcI,475
 synapse_sdk/utils/module_loading.py,sha256=chHpU-BZjtYaTBD_q0T7LcKWtqKvYBS4L0lPlKkoMQ8,1020
 synapse_sdk/utils/network.py,sha256=WI8qn6KlKpHdMi45V57ofKJB8zusJrbQsxT74LwVfsY,1000
 synapse_sdk/utils/string.py,sha256=rEwuZ9SAaZLcQ8TYiwNKr1h2u4CfnrQx7SUL8NWmChg,216
-synapse_sdk/utils/converters/__init__.py,sha256=7Lc8PeHGKKRlfhIyBbWXa258ha6qOcZCywGleFwD47E,9919
+synapse_sdk/utils/converters/__init__.py,sha256=jy-BxGUe1NOxQ0g8s9HNoPSYM2Xeq4Rd0vk8HDvFOhs,9926
 synapse_sdk/utils/converters/coco/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-synapse_sdk/utils/converters/coco/from_dm.py,sha256=GH_y0zOYczbwByDusC4JiBl1M3utxpBYit7E_px7F-U,9620
+synapse_sdk/utils/converters/coco/from_dm.py,sha256=78aJ_O2_hmkQQ96nrjHY38roETWfBZB8GRHDn7qKEls,9626
 synapse_sdk/utils/converters/coco/to_dm.py,sha256=Ve8LrcKVlzNysam3fidcgP5fdm0_UGbBgSPoj2dT_JA,4906
+synapse_sdk/utils/converters/yolo/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+synapse_sdk/utils/converters/yolo/from_dm.py,sha256=e9u4CM4gWnh9_EzYiA-EqL8RICZo5NafWXzaqnrIrdU,12600
 synapse_sdk/utils/pydantic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 synapse_sdk/utils/pydantic/config.py,sha256=1vYOcUI35GslfD1rrqhFkNXXJOXt4IDqOPSx9VWGfNE,123
 synapse_sdk/utils/pydantic/errors.py,sha256=0v0T12eQBr1KrFiEOBu6KMaPK4aPEGEC6etPJGoR5b4,1061
@@ -207,9 +209,9 @@ synapse_sdk/utils/storage/providers/gcp.py,sha256=i2BQCu1Kej1If9SuNr2_lEyTcr5M_n
 synapse_sdk/utils/storage/providers/http.py,sha256=2DhIulND47JOnS5ZY7MZUex7Su3peAPksGo1Wwg07L4,5828
 synapse_sdk/utils/storage/providers/s3.py,sha256=ZmqekAvIgcQBdRU-QVJYv1Rlp6VHfXwtbtjTSphua94,2573
 synapse_sdk/utils/storage/providers/sftp.py,sha256=_8s9hf0JXIO21gvm-JVS00FbLsbtvly4c-ETLRax68A,1426
-synapse_sdk-1.0.0a71.dist-info/licenses/LICENSE,sha256=bKzmC5YAg4V1Fhl8OO_tqY8j62hgdncAkN7VrdjmrGk,1101
-synapse_sdk-1.0.0a71.dist-info/METADATA,sha256=Evpxgx7r7pGE_VEOeBHGktT7mNqWbnj9kGuWgNVKilc,1130
-synapse_sdk-1.0.0a71.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-synapse_sdk-1.0.0a71.dist-info/entry_points.txt,sha256=VNptJoGoNJI8yLXfBmhgUefMsmGI0m3-0YoMvrOgbxo,48
-synapse_sdk-1.0.0a71.dist-info/top_level.txt,sha256=ytgJMRK1slVOKUpgcw3LEyHHP7S34J6n_gJzdkcSsw8,12
-synapse_sdk-1.0.0a71.dist-info/RECORD,,
+synapse_sdk-1.0.0a72.dist-info/licenses/LICENSE,sha256=bKzmC5YAg4V1Fhl8OO_tqY8j62hgdncAkN7VrdjmrGk,1101
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