synapse-sdk 1.0.0a35__py3-none-any.whl → 2025.11.7__py3-none-any.whl

synapse_sdk/plugins/categories/upload/actions/upload.py

@@ -1,293 +0,0 @@
-from typing import Annotated, Dict, List
-
-from pydantic import AfterValidator, BaseModel, field_validator
-from pydantic_core import PydanticCustomError
-
-from synapse_sdk.clients.exceptions import ClientError
-from synapse_sdk.clients.utils import get_batched_list
-from synapse_sdk.clients.validators.collections import FileSpecificationValidator
-from synapse_sdk.i18n import gettext as _
-from synapse_sdk.plugins.categories.base import Action
-from synapse_sdk.plugins.categories.decorators import register_action
-from synapse_sdk.plugins.enums import PluginCategory, RunMethod
-from synapse_sdk.plugins.models import Run
-from synapse_sdk.shared.enums import Context
-from synapse_sdk.utils.pydantic.validators import non_blank
-from synapse_sdk.utils.storage import get_pathlib
-
-
-class UploadRun(Run):
-    pass
-
-
-class UploadParams(BaseModel):
-    """Upload action parameters.
-
-    Args:
-        name (str): The name of the action.
-        description (str | None): The description of the action.
-        checkpoint (int | None): The checkpoint of the action.
-        path (str): The path of the action.
-        storage (int): The storage of the action.
-        collection (int): The collection of the action.
-        project (int | None): The project of the action.
-        is_generate_tasks (bool): The flag to generate tasks.
-        is_generate_ground_truths (bool): The flag to generate ground truths
-    """
-
-    name: Annotated[str, AfterValidator(non_blank)]
-    description: str | None
-    path: str
-    storage: int
-    collection: int
-    project: int | None
-    is_generate_tasks: bool = False
-    is_generate_ground_truths: bool = False
-
-    @field_validator('storage', mode='before')
-    @classmethod
-    def check_storage_exists(cls, value: str, info) -> str:
-        """Validate synapse-backend storage exists.
-
-        TODO: Need to define validation method naming convention.
-        TODO: Need to make validation method reusable.
-        """
-        action = info.context['action']
-        client = action.client
-        try:
-            client.get_storage(value)
-        except ClientError:
-            raise PydanticCustomError('client_error', _('Error occurred while checking storage exists.'))
-        return value
-
-    @field_validator('collection', mode='before')
-    @classmethod
-    def check_collection_exists(cls, value: str, info) -> str:
-        """Validate synapse-backend collection exists."""
-        action = info.context['action']
-        client = action.client
-        try:
-            client.get_dataset(value)
-        except ClientError:
-            raise PydanticCustomError('client_error', _('Error occurred while checking collection exists.'))
-        return value
-
-    @field_validator('project', mode='before')
-    @classmethod
-    def check_project_exists(cls, value: str, info) -> str:
-        """Validate synapse-backend project exists."""
-        if not value:
-            return value
-
-        action = info.context['action']
-        client = action.client
-        try:
-            client.get_project(value)
-        except ClientError:
-            raise PydanticCustomError('client_error', _('Error occurred while checking project exists.'))
-        return value
-
-
-@register_action
-class UploadAction(Action):
-    """Upload action class.
-
-    Attrs:
-        name (str): The name of the action.
-        category (PluginCategory): The category of the action.
-        method (RunMethod): The method to run of the action.
-
-    Progress Categories:
-        analyze_collection: The progress category for the analyze collection process.
-        data_file_upload: The progress category for the upload process.
-        generate_data_units: The progress category for the generate data units process.
-        generate_tasks: The progress category for the generate tasks process.
-        generate_ground_truths: The progress category for the generate ground truths process.
-    """
-
-    name = 'upload'
-    category = PluginCategory.UPLOAD
-    method = RunMethod.JOB
-    progress_categories = {
-        'analyze_collection': {
-            'proportion': 5,
-        },
-        'upload_data_files': {
-            'proportion': 35,
-        },
-        'generate_data_units': {
-            'proportion': 20,
-        },
-        'generate_tasks': {
-            'proportion': 20,
-        },
-        'generate_ground_truths': {
-            'proportion': 20,
-        },
-    }
-
-    def get_uploader(self, path):
-        """Get uploader from entrypoint."""
-        return self.entrypoint(self.run, path)
-
-    def start(self) -> Dict:
-        """Start upload process.
-
-        Returns:
-            Dict: The result of the upload process.
-        """
-        # Setup path object with path and storage.
-        storage = self.client.get_storage(self.params['storage'])
-        pathlib_cwd = get_pathlib(storage, self.params['path'])
-
-        # Initialize uploader.
-        uploader = self.get_uploader(pathlib_cwd)
-
-        # Analyze Collection file specifications to determine the data structure for upload.
-        self.run.set_progress(0, 1, category='analyze_collection')
-        file_specification_template = self._analyze_collection()
-        self.run.set_progress(1, 1, category='analyze_collection')
-
-        # Setup result dict.
-        result = {}
-
-        # Organize data according to Collection file specification structure.
-        organized_files = uploader.handle_upload_files()
-        if not self._validate_organized_files(file_specification_template, organized_files):
-            self.run.log_message('Validate organized files failed.')
-            return result
-
-        # Upload files to synapse-backend.
-        organized_files_count = len(organized_files)
-        if not organized_files_count:
-            self.run.log_message('Files not found on the path.', context=Context.WARNING.value)
-            return result
-
-        self.run.set_progress(0, organized_files_count, category='upload_data_files')
-        self.run.log_message('Uploading data files...')
-        result['uploaded_files'] = self._upload_files(organized_files)
-        self.run.set_progress(organized_files_count, organized_files_count, category='upload_data_files')
-        self.run.log_message('Upload data files completed.')
-
-        # Generate data units for the uploaded data.
-        upload_result_count = len(result['uploaded_files'])
-        if not upload_result_count:
-            self.run.log_message('No files were uploaded.', context=Context.WARNING.value)
-            return result
-
-        self.run.set_progress(0, upload_result_count, category='generate_data_units')
-        generated_data_units = self._generate_data_units(result['uploaded_files'])
-        result['generated_data_units'] = generated_data_units
-        self.run.set_progress(upload_result_count, upload_result_count, category='generate_data_units')
-
-        # Setup task with uploaded synapse-backend data units.
-        if not len(generated_data_units):
-            self.run.log_message('No data units were generated.', context=Context.WARNING.value)
-            return result
-
-        self.run.set_progress(0, 1, category='generate_tasks')
-        if self.config['options']['allow_generate_tasks'] and self.params['is_generate_tasks']:
-            self.run.log_message('Generating tasks with data files...')
-            self._generate_tasks(generated_data_units)
-            self.run.log_message('Generating tasks completed')
-        else:
-            self.run.log_message('Generating tasks process has passed.')
-
-        self.run.set_progress(1, 1, category='generate_tasks')
-
-        # Generate ground truths for the uploaded data.
-        # TODO: Need to add ground truths generation logic later.
-        self.run.set_progress(0, 1, category='generate_ground_truths')
-        if self.config['options']['allow_generate_ground_truths'] and self.params['is_generate_ground_truths']:
-            self.run.log_message('Generating ground truths...')
-            self._generate_ground_truths()
-            self.run.log_message('Generating ground truths completed')
-        else:
-            self.run.log_message('Generating ground truths process has passed.')
-        self.run.set_progress(1, 1, category='generate_ground_truths')
-
-        return result
-
-    def _analyze_collection(self) -> Dict:
-        """Analyze Synapse Collection Specifications.
-
-        Returns:
-            Dict: The file specifications of the collection.
-        """
-        client = self.run.client
-        collection_id = self.params['collection']
-        collection = client.get_dataset(collection_id)
-        return collection['file_specifications']
-
-    def _validate_organized_files(self, file_specification_template: Dict, organized_files: List) -> bool:
-        """Validate organized files from Uploader."""
-        validator = FileSpecificationValidator(file_specification_template, organized_files)
-        return validator.validate()
-
-    def _upload_files(self, organized_files) -> List:
-        """Upload files to synapse-backend.
-
-        Returns:
-            Dict: The result of the upload.
-        """
-        client = self.run.client
-        collection_id = self.params['collection']
-        upload_result = []
-        organized_files_count = len(organized_files)
-        current_progress = 0
-        for organized_file in organized_files:
-            upload_result.append(client.upload_data_file(organized_file, collection_id))
-            self.run.set_progress(current_progress, organized_files_count, category='upload_data_files')
-            current_progress += 1
-        return upload_result
-
-    def _generate_data_units(self, uploaded_files: List) -> List:
-        """Generate data units for the uploaded data.
-
-        TODO: make batch size configurable.
-
-        Returns:
-            Dict: The result of the generate data units process.
-        """
-        client = self.run.client
-
-        generation_result = []
-        current_progress = 0
-        batches = get_batched_list(uploaded_files, 100)
-        batches_count = len(batches)
-        for batch in batches:
-            generation_result.append(client.create_data_units(batch))
-            self.run.set_progress(current_progress, batches_count, category='generate_data_units')
-            current_progress += 1
-        return generation_result
-
-    def _generate_tasks(self, generated_data_units: List):
-        """Setup task with uploaded synapse-backend data units.
-
-        TODO: make batch size configurable.
-        """
-
-        # Prepare batches for processing
-        client = self.run.client
-        project_id = self.params['project']
-        current_progress = 0
-
-        # Generate tasks
-        generated_data_units_count = len(generated_data_units)
-        for data_units in generated_data_units:
-            tasks_data = []
-            for data_unit in data_units:
-                task_data = {'project': project_id, 'data_unit': data_unit['id']}
-                tasks_data.append(task_data)
-
-            if tasks_data:
-                client.create_tasks(tasks_data)
-
-            self.run.set_progress(current_progress, generated_data_units_count, category='generate_tasks')
-            current_progress += 1
-
-    def _generate_ground_truths(self):
-        """Generate ground truths for the uploaded data.
-
-        TODO: Need to add ground truths generation logic later.
-        """

synapse_sdk-1.0.0a35.dist-info/METADATA

@@ -1,47 +0,0 @@
-Metadata-Version: 2.4
-Name: synapse-sdk
-Version: 1.0.0a35
-Summary: synapse sdk
-Author-email: datamaker <developer@datamaker.io>
-License: MIT
-Classifier: Programming Language :: Python :: 3
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: boto3
-Requires-Dist: click
-Requires-Dist: cookiecutter
-Requires-Dist: requests
-Requires-Dist: tqdm
-Requires-Dist: python-dotenv
-Requires-Dist: pyyaml
-Requires-Dist: pydantic
-Requires-Dist: pyjwt
-Requires-Dist: universal-pathlib
-Requires-Dist: fsspec[gcs,s3,sftp]
-Provides-Extra: all
-Requires-Dist: ray[all]; extra == "all"
-Dynamic: license-file
-
-This is the SDK to develop synapse plugins
-
-
-## Internationalization
-
-### Find Messages
-```bash
- $ find . -name "*.py" | xargs xgettext -o messages.pot
-```
-
-### Make Messages
-```bash
- $ msginit -l ko -i messages.pot -o locale/ko/LC_MESSAGES/messages.po
- $ msginit -l en -i messages.pot -o locale/en/LC_MESSAGES/messages.po
-```
-
-### Compile Messages
-
-```bash
- $ msgfmt locale/ko/LC_MESSAGES/messages.po -o locale/ko/LC_MESSAGES/messages.mo
- $ msgfmt locale/en/LC_MESSAGES/messages.po -o locale/en/LC_MESSAGES/messages.mo
-```

synapse_sdk-1.0.0a35.dist-info/RECORD

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