swcgeom 0.18.1__py3-none-any.whl → 0.19.0__py3-none-any.whl

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Files changed (68) hide show
  1. swcgeom/__init__.py +12 -1
  2. swcgeom/analysis/__init__.py +6 -6
  3. swcgeom/analysis/feature_extractor.py +22 -24
  4. swcgeom/analysis/features.py +18 -40
  5. swcgeom/analysis/lmeasure.py +227 -323
  6. swcgeom/analysis/sholl.py +17 -23
  7. swcgeom/analysis/trunk.py +23 -28
  8. swcgeom/analysis/visualization.py +37 -44
  9. swcgeom/analysis/visualization3d.py +16 -25
  10. swcgeom/analysis/volume.py +33 -47
  11. swcgeom/core/__init__.py +12 -13
  12. swcgeom/core/branch.py +10 -17
  13. swcgeom/core/branch_tree.py +3 -2
  14. swcgeom/core/compartment.py +1 -1
  15. swcgeom/core/node.py +3 -6
  16. swcgeom/core/path.py +11 -16
  17. swcgeom/core/population.py +32 -51
  18. swcgeom/core/swc.py +25 -16
  19. swcgeom/core/swc_utils/__init__.py +10 -12
  20. swcgeom/core/swc_utils/assembler.py +5 -12
  21. swcgeom/core/swc_utils/base.py +40 -31
  22. swcgeom/core/swc_utils/checker.py +3 -8
  23. swcgeom/core/swc_utils/io.py +32 -47
  24. swcgeom/core/swc_utils/normalizer.py +17 -23
  25. swcgeom/core/swc_utils/subtree.py +13 -20
  26. swcgeom/core/tree.py +61 -51
  27. swcgeom/core/tree_utils.py +36 -49
  28. swcgeom/core/tree_utils_impl.py +4 -6
  29. swcgeom/images/__init__.py +2 -2
  30. swcgeom/images/augmentation.py +23 -39
  31. swcgeom/images/contrast.py +22 -46
  32. swcgeom/images/folder.py +32 -34
  33. swcgeom/images/io.py +80 -121
  34. swcgeom/transforms/__init__.py +13 -13
  35. swcgeom/transforms/base.py +28 -19
  36. swcgeom/transforms/branch.py +31 -41
  37. swcgeom/transforms/branch_tree.py +3 -1
  38. swcgeom/transforms/geometry.py +13 -4
  39. swcgeom/transforms/image_preprocess.py +2 -0
  40. swcgeom/transforms/image_stack.py +40 -35
  41. swcgeom/transforms/images.py +31 -24
  42. swcgeom/transforms/mst.py +27 -40
  43. swcgeom/transforms/neurolucida_asc.py +13 -13
  44. swcgeom/transforms/path.py +4 -0
  45. swcgeom/transforms/population.py +4 -0
  46. swcgeom/transforms/tree.py +16 -11
  47. swcgeom/transforms/tree_assembler.py +37 -54
  48. swcgeom/utils/__init__.py +12 -12
  49. swcgeom/utils/download.py +7 -14
  50. swcgeom/utils/dsu.py +12 -0
  51. swcgeom/utils/ellipse.py +26 -14
  52. swcgeom/utils/file.py +8 -13
  53. swcgeom/utils/neuromorpho.py +78 -92
  54. swcgeom/utils/numpy_helper.py +15 -12
  55. swcgeom/utils/plotter_2d.py +10 -16
  56. swcgeom/utils/plotter_3d.py +7 -9
  57. swcgeom/utils/renderer.py +16 -8
  58. swcgeom/utils/sdf.py +12 -23
  59. swcgeom/utils/solid_geometry.py +58 -2
  60. swcgeom/utils/transforms.py +164 -100
  61. swcgeom/utils/volumetric_object.py +29 -53
  62. {swcgeom-0.18.1.dist-info → swcgeom-0.19.0.dist-info}/METADATA +7 -6
  63. swcgeom-0.19.0.dist-info/RECORD +67 -0
  64. {swcgeom-0.18.1.dist-info → swcgeom-0.19.0.dist-info}/WHEEL +1 -1
  65. swcgeom/_version.py +0 -16
  66. swcgeom-0.18.1.dist-info/RECORD +0 -68
  67. {swcgeom-0.18.1.dist-info → swcgeom-0.19.0.dist-info/licenses}/LICENSE +0 -0
  68. {swcgeom-0.18.1.dist-info → swcgeom-0.19.0.dist-info}/top_level.txt +0 -0
swcgeom-0.18.1.dist-info/RECORD DELETED
@@ -1,68 +0,0 @@
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