swcgeom 0.17.1__py3-none-any.whl → 0.18.1__py3-none-any.whl

swcgeom/transforms/tree_assembler.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Assemble a tree."""
 
 from collections.abc import Iterable
@@ -38,7 +53,7 @@ class LinesToTree(Transform[list[pd.DataFrame], Tree]):
 
     def __call__(
         self, lines: Iterable[pd.DataFrame], *, names: Optional[SWCNames] = None
-    ):
+    ):  # TODO check this
         return self.assemble(lines, names=names)
 
     def assemble(
@@ -56,8 +71,8 @@ class LinesToTree(Transform[list[pd.DataFrame], Tree]):
         Parameters
         ----------
         lines : List of ~pd.DataFrame
-            An array of tables containing a line, columns should follwing
-            the swc.
+            An array of tables containing a line, columns should
+            following the swc.
         undirected : bool, default `True`
             Forwarding to `self.try_assemble`.
         names : SWCNames, optional
@@ -170,5 +185,5 @@ class LinesToTree(Transform[list[pd.DataFrame], Tree]):
 
         return tree, lines
 
-    def extra_repr(self):
+    def extra_repr(self) -> str:
         return f"thre={self.thre}, undirected={self.undirected}"

swcgeom/utils/__init__.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Utils."""
 
 from swcgeom.utils.debug import *

swcgeom/utils/debug.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Debug helpers"""
 
 import time

swcgeom/utils/download.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Download helpers.
 
 Notes
@@ -13,6 +28,7 @@ import itertools
 import logging
 import multiprocessing
 import os
+from functools import partial
 from urllib.parse import urljoin
 
 __all__ = ["download", "fetch_page", "clone_index_page"]
@@ -26,7 +42,7 @@ def download(dst: str, url: str) -> None:
     r = conn.request("GET", url)
 
     dirname = os.path.dirname(dst)
-    if not os.path.exists(dirname):
+    if dirname != "" and not os.path.exists(dirname):
         os.makedirs(dirname)
 
     with open(dst, "wb") as file:
@@ -41,7 +57,7 @@ def fetch_page(url: str):
     conn = connection_from_url(url)
     r = conn.request("GET", url)
     data = r.data.decode("utf-8")
-    return BeautifulSoup(data)
+    return BeautifulSoup(data, features="html.parser")
 
 
 def clone_index_page(
@@ -62,31 +78,35 @@ def clone_index_page(
     multiprocess : int, default `4`
         How many process are available for download.
     """
-    from urllib3.exceptions import HTTPError
-
     files = get_urls_in_index_page(index_url)
     logging.info("downloader: search `%s`, found %s files.", index_url, len(files))
 
-    def task(url: str) -> None:
-        filepath = url.removeprefix(index_url)
-        dist = os.path.join(dist_dir, filepath)
-        if os.path.exists(filepath):
-            if not override:
-                logging.info("downloader: file `%s` exits, skiped.", dist)
-                return
+    task = partial(
+        _clone_index_page, index_url=index_url, dist_dir=dist_dir, override=override
+    )
+    with multiprocessing.Pool(multiprocess) as p:
+        p.map(task, files)
 
-            logging.info("downloader: file `%s` exits, deleted.", dist)
-            os.remove(filepath)
 
-        try:
-            logging.info("downloader: downloading `%s` to `%s`", url, dist)
-            download(filepath, url)
-            logging.info("downloader: download `%s` to `%s`", url, dist)
-        except HTTPError as ex:
-            logging.info("downloader: fails to download `%s`, except `%s`", url, ex)
+def _clone_index_page(url: str, index_url: str, dist_dir: str, override: bool) -> None:
+    from urllib3.exceptions import HTTPError
 
-    with multiprocessing.Pool(multiprocess) as p:
-        p.map(task, files)
+    filepath = url.removeprefix(index_url)
+    dist = os.path.join(dist_dir, filepath)
+    if os.path.exists(dist):
+        if not override:
+            logging.info("downloader: file `%s` exits, skiped.", dist)
+            return
+
+        logging.info("downloader: file `%s` exits, deleted.", dist)
+        os.remove(dist)
+
+    try:
+        logging.info("downloader: downloading `%s` to `%s`", url, dist)
+        download(dist, url)
+        logging.info("downloader: download `%s` to `%s`", url, dist)
+    except HTTPError as ex:
+        logging.info("downloader: fails to download `%s`, except `%s`", url, ex)
 
 
 def get_urls_in_index_page(url: str) -> list[str]:
@@ -97,3 +117,21 @@ def get_urls_in_index_page(url: str) -> list[str]:
     dirs = [urljoin(url, a) for a in links if a != "../" and a.endswith("/")]
     files.extend(itertools.chain(*[get_urls_in_index_page(dir) for dir in dirs]))
     return files
+
+
+if __name__ == "__main__":
+    import argparse
+
+    parser = argparse.ArgumentParser(description="Download files from index page.")
+    parser.add_argument("url", type=str, help="URL of index page.")
+    parser.add_argument("dist", type=str, help="Directory of dist.")
+    parser.add_argument(
+        "--override", type=bool, default=False, help="Override existing file."
+    )
+    parser.add_argument(
+        "--multiprocess", type=int, default=4, help="How many process are available."
+    )
+    args = parser.parse_args()
+
+    logging.basicConfig(level=logging.INFO)
+    clone_index_page(args.url, args.dist, args.override, args.multiprocess)

swcgeom/utils/dsu.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Disjoint Set Union Impl."""
 
 __all__ = ["DisjointSetUnion"]

swcgeom/utils/ellipse.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Finds the Minimum Volume Enclosing Ellipsoid."""
 
 # pylint: disable=invalid-name

swcgeom/utils/file.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """File related utils.
 
 Notes

swcgeom/utils/neuromorpho.py

@@ -1,9 +1,24 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """NeuroMorpho.org.
 
 Examples
 --------
 
-Metadata: 
+Metadata:
 
 ```json
 {
@@ -287,13 +302,9 @@ class NeuroMorpho:
             where = where or (lambda _: True)
             if isinstance(group_by, str):
                 key = group_by
-                group_by = lambda v: v[
-                    key
-                ]  # pylint: disable=unnecessary-lambda-assignment
+                group_by = lambda v: v[key]  # pylint: disable=unnecessary-lambda-assignment
             elif group_by is None:
-                group_by = (
-                    lambda _: None
-                )  # pylint: disable=unnecessary-lambda-assignment
+                group_by = lambda _: None  # pylint: disable=unnecessary-lambda-assignment
             items = []
             for k, v in tx_m.cursor():
                 metadata = json.loads(v)

swcgeom/utils/numpy_helper.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Numpy related utils."""
 
 from contextlib import contextmanager

swcgeom/utils/plotter_2d.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """2D Plotting utils."""
 
 from typing import Optional

swcgeom/utils/plotter_3d.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """3D Plotting utils."""
 
 import numpy as np
@@ -27,5 +42,7 @@ def draw_lines_3d(
         Forwarded to `~mpl_toolkits.mplot3d.art3d.Line3DCollection`.
     """
 
-    line_collection = Line3DCollection(lines, joinstyle=joinstyle, capstyle=capstyle, **kwargs)  # type: ignore
+    line_collection = Line3DCollection(
+        lines, joinstyle=joinstyle, capstyle=capstyle, **kwargs
+    )  # type: ignore
     return ax.add_collection3d(line_collection)

swcgeom/utils/renderer.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Rendering related utils."""
 
 from functools import cached_property

swcgeom/utils/sdf.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Signed distance functions.
 
 Refs: https://iquilezles.org/articles/distfunctions/
@@ -14,6 +29,7 @@ from collections.abc import Iterable
 
 import numpy as np
 import numpy.typing as npt
+from typing_extensions import deprecated
 
 from swcgeom.utils.solid_geometry import project_vector_on_plane
 
@@ -173,6 +189,7 @@ class SDFDifference(SDF):
         return flags
 
 
+@deprecated("Use `SDFUnion` instead")
 class SDFCompose(SDFUnion):
     """Compose multiple SDFs.
 
@@ -181,11 +198,6 @@ class SDFCompose(SDFUnion):
     """
 
     def __init__(self, sdfs: Iterable[SDF]) -> None:
-        warnings.warn(
-            "`SDFCompose` has been replace by `SDFUnion` since v0.14.0, "
-            "and will be removed in next version",
-            DeprecationWarning,
-        )
         sdfs = list(sdfs)
         if len(sdfs) == 1:
             warnings.warn("compose only one SDF, use SDFCompose.compose instead")

swcgeom/utils/solid_geometry.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Solid Geometry."""
 
 import numpy as np

swcgeom/utils/transforms.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """3D geometry transformations."""
 
 import numpy as np
@@ -21,7 +36,7 @@ Vec3f = tuple[float, float, float]
 
 
 def angle(a: npt.ArrayLike, b: npt.ArrayLike) -> float:
-    """Get the agnle of vectors.
+    """Get the angle of vectors.
 
     Returns
     -------

swcgeom/utils/volumetric_object.py

@@ -1,3 +1,18 @@
+# Copyright 2022-2025 Zexin Yuan
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
 """Volumetric object.
 
 This library implements the calculation of volumes for any shape

{swcgeom-0.17.1.dist-info → swcgeom-0.18.1.dist-info}/LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright [2024] [Zexin Yuan]
+   Copyright [yyyy] [name of copyright owner]
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

{swcgeom-0.17.1.dist-info → swcgeom-0.18.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: swcgeom
-Version: 0.17.1
+Version: 0.18.1
 Summary: Neuron geometry library for swc format
 Author-email: yzx9 <yuan.zx@outlook.com>
 License: Apache-2.0
@@ -9,25 +9,25 @@ Keywords: neuronscience,neuron,neuroanatomy,neuron-morphology
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: imagecodecs >=2023.3.16
-Requires-Dist: matplotlib >=3.5.2
-Requires-Dist: numpy >=1.22.3
-Requires-Dist: pandas >=1.4.2
-Requires-Dist: pynrrd >=1.0.0
-Requires-Dist: scipy >=1.9.1
-Requires-Dist: sdflit >=0.2.1
-Requires-Dist: seaborn >=0.12.0
-Requires-Dist: tifffile >=2022.8.12
-Requires-Dist: typing-extensions >=4.4.0
-Requires-Dist: tqdm >=4.46.1
-Requires-Dist: v3d-py-helper >=0.1.0
+Requires-Dist: imagecodecs>=2023.3.16
+Requires-Dist: matplotlib>=3.5.2
+Requires-Dist: numpy>=1.22.3
+Requires-Dist: pandas>=1.4.2
+Requires-Dist: pynrrd>=1.1.0
+Requires-Dist: scipy>=1.9.1
+Requires-Dist: sdflit>=0.2.1
+Requires-Dist: seaborn>=0.12.0
+Requires-Dist: tifffile>=2022.8.12
+Requires-Dist: typing_extensions>=4.4.0
+Requires-Dist: tqdm>=4.46.1
+Requires-Dist: v3d-py-helper==0.1.0
 Provides-Extra: all
-Requires-Dist: beautifulsoup4 >=4.11.1 ; extra == 'all'
-Requires-Dist: certifi >=2023.5.7 ; extra == 'all'
-Requires-Dist: chardet >=5.2.0 ; extra == 'all'
-Requires-Dist: lmdb >=1.4.1 ; extra == 'all'
-Requires-Dist: requests >=2.0.0 ; extra == 'all'
-Requires-Dist: urllib3 >=1.26.0 ; extra == 'all'
+Requires-Dist: beautifulsoup4>=4.11.1; extra == "all"
+Requires-Dist: certifi>=2023.5.7; extra == "all"
+Requires-Dist: chardet>=5.2.0; extra == "all"
+Requires-Dist: lmdb>=1.4.1; extra == "all"
+Requires-Dist: requests>=2.0.0; extra == "all"
+Requires-Dist: urllib3>=1.26.0; extra == "all"
 
 # SWCGEOM
 
@@ -56,16 +56,20 @@ pip install build
 pip install --editable .
 ```
 
-Static analysis don't support import hook used in editable install for [PEP660](https://peps.python.org/pep-0660/) since upgrade to setuptools v64+, detail infomation at [setuptools#3518](https://github.com/pypa/setuptools/issues/3518), a workaround for vscode with pylance:
+Static analysis don't support import hook used in editable install for
+[PEP660](https://peps.python.org/pep-0660/) since upgrade to setuptools v64+,
+detail information at [setuptools#3518](https://github.com/pypa/setuptools/issues/3518),
+a workaround for vscode with pylance:
 
 ```json
 {
-    "python.analysis.extraPaths": ["/path/to/this/project"]
+  "python.analysis.extraPaths": ["/path/to/this/project"]
 }
 ```
 
 ## LICENSE
 
-This work is licensed under a <a rel="license" href="https://www.apache.org/licenses/">Apache-2.0</a>.
+This work is licensed under a
+<a rel="license" href="https://www.apache.org/licenses/">Apache-2.0</a>.
 
 Copyright (c) 2022-present, Zexin Yuan

swcgeom-0.18.1.dist-info/RECORD

@@ -0,0 +1,68 @@
+swcgeom/__init__.py,sha256=i9vi8J65kOj8z_gkGkDTufHn28zNbv6panIr9AuNNoc,845
+swcgeom/_version.py,sha256=WKuH__LVaZHj35m7SuPDdqOuUScbj9XEwpPI5Tns-Xw,413
+swcgeom/analysis/__init__.py,sha256=ZCxLqk5aA_96C5281RristqpEp3mnKyDcPOFom2d8iU,861
+swcgeom/analysis/feature_extractor.py,sha256=8hmwwWCZ8c_XcnmyY--vRygo-OAovIoMuVTHnixX8KA,14855
+swcgeom/analysis/features.py,sha256=NnFRUsMO7mPoBNLQ_kwSWHSfaV1BCOYTZz6VuG2Cfi8,6905
+swcgeom/analysis/lmeasure.py,sha256=RLhRIo3VOQFqisBDetP120SntWSTE2rJ-vL5l-QGT40,28688
+swcgeom/analysis/sholl.py,sha256=uGElY5hXILON8uHX9phGwFeKMjWCtA1GTeoyKStkSPE,7203
+swcgeom/analysis/trunk.py,sha256=f6oH2Xlpn76JjKNsC0DKFsnYGn4FP4YRucCeyUaGgjg,6147
+swcgeom/analysis/visualization.py,sha256=dioNW7Y596xhUPySkr-gbcCzLFm4PPsizKAjEXgAdyI,6216
+swcgeom/analysis/visualization3d.py,sha256=OIUEtxPZpwK8eDEuy8_ezh5x2oQishQ3-aj-dGselAY,3094
+swcgeom/analysis/volume.py,sha256=KLEqE5OWKckdw2qsI8Ugmxi-_jePnE9N9ZN6QFC07y8,5197
+swcgeom/core/__init__.py,sha256=RPx9camQEOnI1WZSxfT8Kwb3fxMtg7yPJERvyr_nDqo,1026
+swcgeom/core/branch.py,sha256=xu5J12FjxXSNL3Q_Uiy5qLlMozfcdnkIDO-XyDB_CYg,4764
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