swcgeom 0.17.1__py3-none-any.whl → 0.17.2__py3-none-any.whl

swcgeom/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.17.1'
-__version_tuple__ = version_tuple = (0, 17, 1)
+__version__ = version = '0.17.2'
+__version_tuple__ = version_tuple = (0, 17, 2)

swcgeom/analysis/feature_extractor.py

@@ -19,8 +19,8 @@ import seaborn as sns
 from matplotlib.axes import Axes
 
 from swcgeom.analysis.features import (
-    BifurcationFeatures,
     BranchFeatures,
+    FurcationFeatures,
     NodeFeatures,
     PathFeatures,
     TipFeatures,
@@ -40,6 +40,9 @@ Feature = Literal[
     "node_count",
     "node_radial_distance",
     "node_branch_order",
+    # furcation nodes
+    "furcation_count",
+    "furcation_radial_distance",
     # bifurcation nodes
     "bifurcation_count",
     "bifurcation_radial_distance",
@@ -57,7 +60,7 @@ Feature = Literal[
 NDArrayf32 = npt.NDArray[np.float32]
 FeatAndKwargs = Feature | tuple[Feature, dict[str, Any]]
 
-Feature1D = set(["length", "volume", "node_count", "bifurcation_count", "tip_count"])
+Feature1D = set(["length", "volume", "node_count", "furcation_count", "tip_count"])
 
 
 class Features:
@@ -70,7 +73,7 @@ class Features:
     @cached_property
     def node_features(self) -> NodeFeatures: return NodeFeatures(self.tree)
     @cached_property
-    def bifurcation_features(self) -> BifurcationFeatures: return BifurcationFeatures(self.node_features)
+    def furcation_features(self) -> FurcationFeatures: return FurcationFeatures(self.node_features)
     @cached_property
     def tip_features(self) -> TipFeatures: return TipFeatures(self.node_features)
     @cached_property
@@ -214,6 +217,12 @@ class FeatureExtractor(ABC):
     ) -> Axes:
         raise NotImplementedError()
 
+    def get_bifurcation_count(self, **kwargs):
+        raise DeprecationWarning("Use `furcation_count` instead.")
+
+    def get_bifurcation_radial_distance(self, **kwargs):
+        raise DeprecationWarning("Use `furcation_radial_distance` instead.")
+
 
 class TreeFeatureExtractor(FeatureExtractor):
     """Extract feature from tree."""

swcgeom/analysis/features.py

@@ -6,7 +6,7 @@ from typing import TypeVar
 
 import numpy as np
 import numpy.typing as npt
-from typing_extensions import Self
+from typing_extensions import Self, deprecated
 
 from swcgeom.core import Branch, BranchTree, Tree
 
@@ -121,12 +121,24 @@ class _SubsetNodesFeatures(ABC):
         return cls(NodeFeatures(tree))
 
 
-class BifurcationFeatures(_SubsetNodesFeatures):
-    """Evaluate bifurcation node feature of tree."""
+class FurcationFeatures(_SubsetNodesFeatures):
+    """Evaluate furcation node feature of tree."""
 
     @cached_property
     def nodes(self) -> npt.NDArray[np.bool_]:
-        return np.array([n.is_bifurcation() for n in self._features.tree])
+        return np.array([n.is_furcation() for n in self._features.tree])
+
+
+@deprecated("Use FurcationFeatures instead")
+class BifurcationFeatures(FurcationFeatures):
+    """Evaluate bifurcation node feature of tree.
+
+    Notes
+    -----
+    Deprecated due to the wrong spelling of furcation. For now, it
+    is just an alias of `FurcationFeatures` and raise a warning. It
+    will be change to raise an error in the future.
+    """
 
 
 class TipFeatures(_SubsetNodesFeatures):

swcgeom/analysis/lmeasure.py

@@ -5,9 +5,7 @@ from typing import Literal
 
 import numpy as np
 import numpy.typing as npt
-
 from swcgeom.core import Branch, Compartment, Node, Tree
-from swcgeom.utils import angle
 
 __all__ = ["LMeasure"]
 
@@ -69,7 +67,7 @@ class LMeasure:
         --------
         L-Measure: http://cng.gmu.edu:8080/Lm/help/N_bifs.htm
         """
-        return len(tree.get_bifurcations())
+        return len(tree.get_furcations())
 
     def n_branch(self, tree: Tree) -> int:
         """Number of branches.
@@ -163,12 +161,15 @@ class LMeasure:
         --------
         L-Measure: http://cng.gmu.edu:8080/Lm/help/Partition_asymmetry.htm
         """
+
         children = n.children()
         assert (
             len(children) == 2
         ), "Partition asymmetry is only defined for bifurcations"
         n1 = len(children[0].subtree().get_tips())
         n2 = len(children[1].subtree().get_tips())
+        if n1 == n2:
+            return 0
         return abs(n1 - n2) / (n1 + n2 - 2)
 
     def fractal_dim(self):
@@ -336,7 +337,7 @@ class LMeasure:
         return (da**rall_power + db**rall_power) / dp**rall_power
 
     def bif_ampl_local(self, bif: Tree.Node) -> float:
-        """Bifuraction angle.
+        """Bifurcation angle.
 
         Given a bifurcation, this function returns the angle between
         the first two compartments (in degree).
@@ -350,7 +351,7 @@ class LMeasure:
         return np.degrees(angle(v1, v2))
 
     def bif_ampl_remote(self, bif: Tree.Node) -> float:
-        """Bifuraction angle.
+        """Bifurcation angle.
 
         This function returns the angle between two bifurcation points
         or between bifurcation point and terminal point or between two
@@ -361,7 +362,7 @@ class LMeasure:
         L-Measure: http://cng.gmu.edu:8080/Lm/help/Bif_ampl_remote.htm
         """
 
-        v1, v2 = self._bif_vector_local(bif)
+        v1, v2 = self._bif_vector_remote(bif)
         return np.degrees(angle(v1, v2))
 
     def bif_tilt_local(self, bif: Tree.Node) -> float:
@@ -665,7 +666,7 @@ class LMeasure:
         n = node
         order = 0
         while n is not None:
-            if n.is_bifurcation():
+            if n.is_furcation():
                 order += 1
             n = n.parent()
         return order
@@ -819,3 +820,23 @@ def pill_surface_area(ra: float, rb: float, h: float) -> float:
     bottom_hemisphere_area = 2 * math.pi * rb**2
     total_area = lateral_area + top_hemisphere_area + bottom_hemisphere_area
     return total_area
+
+
+# TODO: move to `utils`
+def angle(a: npt.ArrayLike, b: npt.ArrayLike) -> float:
+    """Get the angle of vectors.
+
+    Returns
+    -------
+    angle : float
+        Angle [0, PI) in radians.
+    """
+
+    a, b = np.array(a), np.array(b)
+    if np.linalg.norm(a) == 0 or np.linalg.norm(b) == 0:
+        raise ValueError("Input vectors must not be zero vectors.")
+
+    costheta = np.dot(a, b) / (np.linalg.norm(a) * np.linalg.norm(b))
+    costheta = np.clip(costheta, -1, 1)  # avoid numerical errors
+    theta = np.arccos(costheta)
+    return theta

swcgeom/analysis/sholl.py

@@ -8,6 +8,7 @@ import numpy.typing as npt
 import seaborn as sns
 from matplotlib.axes import Axes
 from matplotlib.figure import Figure
+from typing_extensions import deprecated
 
 from swcgeom.analysis.visualization import draw
 from swcgeom.core import Tree
@@ -160,20 +161,17 @@ class Sholl:
 
         return self.get_rs(self.rmax, steps)
 
+    @deprecated("Use `Sholl.get(x)` instead")
     def get_count(self) -> npt.NDArray[np.int32]:
         """Get the count of intersection.
 
         .. deprecated:: 0.5.0
-            Use :meth:`Sholl.get` instead.
+            Use :meth:`Sholl(x).get()` instead.
         """
 
-        warnings.warn(
-            "`Sholl.get_count` has been renamed to `get` since v0.5.0, "
-            "and will be removed in next version",
-            DeprecationWarning,
-        )
         return self.get().astype(np.int32)
 
+    @deprecated("Use `Shool(x).get().mean()` instead")
     def avg(self) -> float:
         """Get the average of the count of intersection.
 
@@ -181,14 +179,9 @@ class Sholl:
             Use :meth:`Shool(x).get().mean()` instead.
         """
 
-        warnings.warn(
-            "`Sholl.avg` has been deprecated since v0.6.0 and will be "
-            "removed in next version, use `Shool(x).get().mean()` "
-            "instead",
-            DeprecationWarning,
-        )
         return self.get().mean()
 
+    @deprecated("Use `Shool(x).get().std()` instead")
     def std(self) -> float:
         """Get the std of the count of intersection.
 
@@ -196,14 +189,9 @@ class Sholl:
             Use :meth:`Shool(x).get().std()` instead.
         """
 
-        warnings.warn(
-            "`Sholl.std` has been deprecate since v0.6.0 and will be "
-            "removed in next version, use `Shool(x).get().std()` "
-            "instead",
-            DeprecationWarning,
-        )
         return self.get().std()
 
+    @deprecated("Use `Shool(x).get().sum()` instead")
     def sum(self) -> int:
         """Get the sum of the count of intersection.
 
@@ -211,10 +199,4 @@ class Sholl:
             Use :meth:`Shool(x).get().sum()` instead.
         """
 
-        warnings.warn(
-            "`Sholl.sum` has been deprecate since v0.6.0 and will be "
-            "removed in next version, use `Shool(x).get().sum()` "
-            "instead",
-            DeprecationWarning,
-        )
         return self.get().sum()

swcgeom/core/node.py

@@ -5,6 +5,7 @@ from typing import Any, Generic
 
 import numpy as np
 import numpy.typing as npt
+from typing_extensions import deprecated
 
 from swcgeom.core.swc import DictSWC, SWCTypeVar
 from swcgeom.core.swc_utils import SWCNames
@@ -95,9 +96,22 @@ class Node(Generic[SWCTypeVar]):
         items = [self.id, self.type, x, y, z, r, self.pid]
         return " ".join(map(str, items))
 
-    def is_bifurcation(self) -> bool:
+    def is_furcation(self) -> bool:
+        """Is furcation node."""
         return np.count_nonzero(self.attach.pid() == self.id) > 1
 
+    @deprecated("Use is_furcation instead")
+    def is_bifurcation(self) -> bool:
+        """Is furcation node.
+
+        Notes
+        -----
+        Deprecated due to the wrong spelling of furcation. For now, it
+        is just an alias of `is_furcation` and raise a warning. It will
+        be change to raise an error in the future.
+        """
+        return self.is_furcation()
+
     def is_tip(self) -> bool:
         return self.id not in self.attach.pid()
 

swcgeom/core/path.py

@@ -1,11 +1,11 @@
 """Nueron path."""
 
-import warnings
 from collections.abc import Iterable, Iterator
 from typing import Generic, overload
 
 import numpy as np
 import numpy.typing as npt
+from typing_extensions import deprecated
 
 from swcgeom.core.node import Node
 from swcgeom.core.swc import DictSWC, SWCLike, SWCTypeVar
@@ -16,7 +16,7 @@ __all__ = ["Path"]
 class Path(SWCLike, Generic[SWCTypeVar]):
     """Neuron path.
 
-    A path is a linear set of points without bifurcations.
+    A path is a linear set of points without furcations.
     """
 
     attach: SWCTypeVar
@@ -75,6 +75,7 @@ class Path(SWCLike, Generic[SWCTypeVar]):
     def get_ndata(self, key: str) -> npt.NDArray:
         return self.attach.get_ndata(key)[self.idx]
 
+    @deprecated("Use `path.node` instead.")
     def get_node(self, idx: int | np.integer) -> Node:
         """Get the count of intersection.
 
@@ -82,11 +83,6 @@ class Path(SWCLike, Generic[SWCTypeVar]):
             Use :meth:`path.node` instead.
         """
 
-        warnings.warn(
-            "`Path.get_node` has been deprecated since v0.16.0 and "
-            "will be removed in future version",
-            DeprecationWarning,
-        )
         return self.node(idx)
 
     def node(self, idx: int | np.integer) -> Node:

swcgeom/core/population.py

@@ -97,6 +97,19 @@ class ChainTrees:
         return (self[i] for i in range(self.__len__()))
 
 
+class NestTrees:
+    def __init__(self, trees: Trees, idx: Iterable[int], /) -> None:
+        super().__init__()
+        self.trees = trees
+        self.idx = list(idx)
+
+    def __getitem__(self, key: int, /) -> Tree:
+        return self.trees[self.idx[key]]
+
+    def __len__(self) -> int:
+        return len(self.idx)
+
+
 class Population:
     """Neuron population."""
 
@@ -135,13 +148,14 @@ class Population:
 
     # fmt:off
     @overload
-    def __getitem__(self, key: slice) -> list[Tree]: ...
+    def __getitem__(self, key: slice) -> Trees: ...
     @overload
     def __getitem__(self, key: int) -> Tree: ...
     # fmt:on
-    def __getitem__(self, key):
+    def __getitem__(self, key: int | slice):
         if isinstance(key, slice):
-            return [cast(Tree, self.trees[i]) for i in range(*key.indices(len(self)))]
+            trees = NestTrees(self.trees, range(*key.indices(len(self))))
+            return cast(Trees, trees)
 
         if isinstance(key, (int, np.integer)):
             return cast(Tree, self.trees[int(key)])
@@ -328,3 +342,14 @@ def _get_idx(key: int, length: int) -> int:
         key += length
 
     return key
+
+
+# experimental
+def filter_population(
+    pop: Population, predicate: Callable[[Tree], bool]
+) -> "Population":
+    """Filter trees in the population."""
+
+    # TODO: how to avoid load trees
+    idx = [i for i, t in enumerate(pop) if predicate(t)]
+    return Population(NestTrees(pop.trees, idx), root=pop.root)

swcgeom/core/swc_utils/checker.py

@@ -1,11 +1,11 @@
 """Check common """
 
-import warnings
 from collections import defaultdict
 from typing import Optional
 
 import numpy as np
 import pandas as pd
+from typing_extensions import deprecated
 
 from swcgeom.core.swc_utils.base import SWCNames, Topology, get_dsu, get_names, traverse
 from swcgeom.utils import DisjointSetUnion
@@ -81,6 +81,7 @@ def has_cyclic(topology: Topology) -> bool:
     return False
 
 
+@deprecated("Use `is_single_root` instead")
 def check_single_root(*args, **kwargs) -> bool:
     """Check if the tree is single root.
 
@@ -88,14 +89,10 @@ def check_single_root(*args, **kwargs) -> bool:
         Use :meth:`is_single_root` instead.
     """
 
-    warnings.warn(
-        "`check_single_root` has been renamed to `is_single_root` since"
-        "v0.5.0, and will be removed in next version",
-        DeprecationWarning,
-    )
     return is_single_root(*args, **kwargs)
 
 
+@deprecated("Use `is_bifurcate` instead")
 def is_binary_tree(
     df: pd.DataFrame, exclude_root: bool = True, *, names: Optional[SWCNames] = None
 ) -> bool:
@@ -105,11 +102,6 @@ def is_binary_tree(
         Use :meth:`is_bifurcate` instead.
     """
 
-    warnings.warn(
-        "`is_binary_tree` has been replaced by to `is_bifurcate` since"
-        "v0.8.0, and will be removed in next version",
-        DeprecationWarning,
-    )
     names = get_names(names)
     topo = (df[names.id].to_numpy(), df[names.pid].to_numpy())
     return is_bifurcate(topo, exclude_root=exclude_root)

swcgeom/core/tree.py

@@ -8,6 +8,7 @@ from typing import Literal, Optional, TypeVar, Union, overload
 import numpy as np
 import numpy.typing as npt
 import pandas as pd
+from typing_extensions import deprecated
 
 from swcgeom.core.branch import Branch
 from swcgeom.core.compartment import Compartment, Compartments
@@ -38,11 +39,11 @@ class Tree(DictSWC):
 
         def branch(self) -> "Tree.Branch":
             ns: list["Tree.Node"] = [self]
-            while not ns[-1].is_bifurcation() and (p := ns[-1].parent()) is not None:
+            while not ns[-1].is_furcation() and (p := ns[-1].parent()) is not None:
                 ns.append(p)
 
             ns.reverse()
-            while not (ns[-1].is_bifurcation() or ns[-1].is_tip()):
+            while not (ns[-1].is_furcation() or ns[-1].is_tip()):
                 ns.append(ns[-1].children()[0])
 
             return Tree.Branch(self.attach, [n.id for n in ns])
@@ -187,16 +188,28 @@ class Tree(DictSWC):
             raise ValueError(f"no soma found in: {self.source}")
         return n
 
-    def get_bifurcations(self) -> list[Node]:
-        """Get all node of bifurcations."""
-        bifurcations: list[int] = []
+    def get_furcations(self) -> list[Node]:
+        """Get all node of furcations."""
+        furcations: list[int] = []
 
-        def collect_bifurcations(n: Tree.Node, children: list[None]) -> None:
+        def collect_furcations(n: Tree.Node, children: list[None]) -> None:
             if len(children) > 1:
-                bifurcations.append(n.id)
+                furcations.append(n.id)
+
+        self.traverse(leave=collect_furcations)
+        return [self.node(i) for i in furcations]
 
-        self.traverse(leave=collect_bifurcations)
-        return [self.node(i) for i in bifurcations]
+    @deprecated("Use `get_furcations` instead")
+    def get_bifurcations(self) -> list[Node]:
+        """Get all node of furcations.
+
+        Notes
+        -----
+        Deprecated due to the wrong spelling of furcation. For now, it
+        is just an alias of `get_furcations` and raise a warning. It
+        will be change to raise an error in the future.
+        """
+        return self.get_furcations()
 
     def get_tips(self) -> list[Node]:
         """Get all node of tips."""

swcgeom/core/tree_utils.py

@@ -5,6 +5,7 @@ from collections.abc import Callable, Iterable
 from typing import Optional, TypeVar, overload
 
 import numpy as np
+from typing_extensions import deprecated
 
 from swcgeom.core.swc import SWCLike
 from swcgeom.core.swc_utils import (
@@ -95,6 +96,7 @@ def cut_tree(tree: Tree, *, enter=None, leave=None):
     return to_subtree(tree, removals)
 
 
+@deprecated("Use `to_subtree` instead")
 def to_sub_tree(swc_like: SWCLike, sub: Topology) -> tuple[Tree, dict[int, int]]:
     """Create subtree from origin tree.
 
@@ -111,13 +113,6 @@ def to_sub_tree(swc_like: SWCLike, sub: Topology) -> tuple[Tree, dict[int, int]]
     id_map : dict[int, int]
     """
 
-    warnings.warn(
-        "`to_sub_tree` will be removed in v0.6.0, it is replaced by "
-        "`to_subtree` beacuse it is easy to use, and this will be "
-        "removed in next version",
-        DeprecationWarning,
-    )
-
     sub = propagate_removal(sub)
     (new_id, new_pid), id_map_arr = to_sub_topology(sub)
 

swcgeom/images/folder.py

@@ -3,7 +3,6 @@
 import math
 import os
 import re
-import warnings
 from collections.abc import Callable, Iterable
 from dataclasses import dataclass
 from typing import Generic, Literal, Optional, TypeVar, overload
@@ -11,7 +10,7 @@ from typing import Generic, Literal, Optional, TypeVar, overload
 import numpy as np
 import numpy.typing as npt
 from tqdm import tqdm
-from typing_extensions import Self
+from typing_extensions import Self, deprecated
 
 from swcgeom.images.io import ScalarType, read_imgs
 from swcgeom.transforms import Identity, Transform
@@ -65,6 +64,7 @@ class ImageStackFolderBase(Generic[ScalarType, T]):
         return fs
 
     @staticmethod
+    @deprecated("Use `~swcgeom.images.io.read_imgs(fname).get_full()` instead")
     def read_imgs(fname: str) -> npt.NDArray[np.float32]:
         """Read images.
 
@@ -72,14 +72,6 @@ class ImageStackFolderBase(Generic[ScalarType, T]):
             Use :meth:`~swcgeom.images.io.read_imgs(fname).get_full()` instead.
         """
 
-        warnings.warn(
-            "`ImageStackFolderBase.read_imgs` serves as a "
-            "straightforward wrapper for `~swcgeom.images.io.read_imgs(fname).get_full()`. "
-            "However, as it is not utilized within our internal "
-            "processes, it is scheduled for removal in the "
-            "forthcoming version.",
-            DeprecationWarning,
-        )
         return read_imgs(fname).get_full()
 
 

swcgeom/images/io.py

@@ -12,6 +12,7 @@ import nrrd
 import numpy as np
 import numpy.typing as npt
 import tifffile
+from typing_extensions import deprecated
 from v3dpy.loaders import PBD, Raw
 
 __all__ = ["read_imgs", "save_tiff", "read_images"]
@@ -601,6 +602,7 @@ class GrayImageStack:
         return self.imgs.shape[:-1]
 
 
+@deprecated("Use `read_imgs` instead")
 def read_images(*args, **kwargs) -> GrayImageStack:
     """Read images.
 
@@ -608,9 +610,4 @@ def read_images(*args, **kwargs) -> GrayImageStack:
         Use :meth:`read_imgs` instead.
     """
 
-    warnings.warn(
-        "`read_images` has been replaced by `read_imgs` because it"
-        "provide rgb support, and this will be removed in next version",
-        DeprecationWarning,
-    )
     return GrayImageStack(read_imgs(*args, **kwargs))

swcgeom/transforms/image_stack.py

@@ -27,6 +27,7 @@ from sdflit import (
     SDFObject,
 )
 from tqdm import tqdm
+from typing_extensions import deprecated
 
 from swcgeom.core import Population, Tree
 from swcgeom.transforms.base import Transform
@@ -63,9 +64,9 @@ class ToImageStack(Transform[Tree, npt.NDArray[np.uint8]]):
         ONLY works for small image stacks, use :meth`transform_and_save`
         for big image stack.
         """
-        return np.stack(list(self.transfrom(x, verbose=False)), axis=0)
+        return np.stack(list(self.transform(x, verbose=False)), axis=0)
 
-    def transfrom(
+    def transform(
         self,
         x: Tree,
         verbose: bool = True,
@@ -102,10 +103,20 @@ class ToImageStack(Transform[Tree, npt.NDArray[np.uint8]]):
             frame = (255 * voxel[..., 0, 0]).astype(np.uint8)
             yield frame
 
+    @deprecated("Use transform instead")
+    def transfrom(
+        self,
+        x: Tree,
+        verbose: bool = True,
+        *,
+        ranges: Optional[tuple[npt.ArrayLike, npt.ArrayLike]] = None,
+    ) -> Iterable[npt.NDArray[np.uint8]]:
+        return self.transform(x, verbose, ranges=ranges)
+
     def transform_and_save(
         self, fname: str, x: Tree, verbose: bool = True, **kwargs
     ) -> None:
-        self.save_tif(fname, self.transfrom(x, verbose=verbose, **kwargs))
+        self.save_tif(fname, self.transform(x, verbose=verbose, **kwargs))
 
     def transform_population(
         self, population: Population | str, verbose: bool = True

swcgeom/transforms/images.py

@@ -1,9 +1,8 @@
 """Image stack related transform."""
 
-import warnings
-
 import numpy as np
 import numpy.typing as npt
+from typing_extensions import deprecated
 
 from swcgeom.transforms.base import Identity, Transform
 
@@ -45,6 +44,7 @@ class ImagesCenterCrop(Transform[NDArrayf32, NDArrayf32]):
         return f"shape_out=({','.join(str(a) for a in self.shape_out)})"
 
 
+@deprecated("use `ImagesCenterCrop` instead", stacklevel=2)
 class Center(ImagesCenterCrop):
     """Get image stack center.
 
@@ -52,14 +52,6 @@ class Center(ImagesCenterCrop):
         Use :class:`ImagesCenterCrop` instead.
     """
 
-    def __init__(self, shape_out: int | tuple[int, int, int]):
-        warnings.warn(
-            "`Center` is deprecated, use `ImagesCenterCrop` instead",
-            DeprecationWarning,
-            stacklevel=2,
-        )
-        super().__init__(shape_out)
-
 
 class ImagesScale(Transform[NDArrayf32, NDArrayf32]):
     def __init__(self, scaler: float) -> None:

swcgeom/transforms/tree.py

@@ -1,10 +1,10 @@
 """Transformation in tree."""
 
-import warnings
 from collections.abc import Callable
 from typing import Optional
 
 import numpy as np
+from typing_extensions import deprecated
 
 from swcgeom.core import BranchTree, DictSWC, Path, Tree, cut_tree, to_subtree
 from swcgeom.core.swc_utils import SWCTypes, get_types
@@ -20,7 +20,7 @@ __all__ = [
     "CutByType",
     "CutAxonTree",
     "CutDendriteTree",
-    "CutByBifurcationOrder",
+    "CutByFurcationOrder",
     "CutShortTipBranch",
 ]
 
@@ -69,6 +69,7 @@ class TreeSmoother(Transform[Tree, Tree]):  # pylint: disable=missing-class-docs
         return f"n_nodes={self.n_nodes}"
 
 
+@deprecated("Use `Normalizer` instead")
 class TreeNormalizer(Normalizer[Tree]):
     """Noramlize coordinates and radius to 0-1.
 
@@ -76,15 +77,6 @@ class TreeNormalizer(Normalizer[Tree]):
         Use :cls:`Normalizer` instead.
     """
 
-    def __init__(self, *args, **kwargs) -> None:
-        warnings.warn(
-            "`TreeNormalizer` has been replaced by `Normalizer` since "
-            "v0.6.0 beacuse it applies more widely, and this will be "
-            "removed in next version",
-            DeprecationWarning,
-        )
-        super().__init__(*args, **kwargs)
-
 
 class CutByType(Transform[Tree, Tree]):
     """Cut tree by type.
@@ -132,28 +124,48 @@ class CutDendriteTree(CutByType):
         super().__init__(type=types.basal_dendrite)  # TODO: apical dendrite
 
 
-class CutByBifurcationOrder(Transform[Tree, Tree]):
-    """Cut tree by bifurcation order."""
+class CutByFurcationOrder(Transform[Tree, Tree]):
+    """Cut tree by furcation order."""
 
-    max_bifurcation_order: int
+    max_furcation_order: int
 
     def __init__(self, max_bifurcation_order: int) -> None:
-        self.max_bifurcation_order = max_bifurcation_order
+        self.max_furcation_order = max_bifurcation_order
 
     def __call__(self, x: Tree) -> Tree:
         return cut_tree(x, enter=self._enter)
 
     def __repr__(self) -> str:
-        return f"CutByBifurcationOrder-{self.max_bifurcation_order}"
+        return f"CutByBifurcationOrder-{self.max_furcation_order}"
 
     def _enter(self, n: Tree.Node, parent_level: int | None) -> tuple[int, bool]:
         if parent_level is None:
             level = 0
-        elif n.is_bifurcation():
+        elif n.is_furcation():
             level = parent_level + 1
         else:
             level = parent_level
-        return (level, level >= self.max_bifurcation_order)
+        return (level, level >= self.max_furcation_order)
+
+
+@deprecated("Use CutByFurcationOrder instead")
+class CutByBifurcationOrder(CutByFurcationOrder):
+    """Cut tree by bifurcation order.
+
+    Notes
+    -----
+    Deprecated due to the wrong spelling of furcation. For now, it
+    is just an alias of `CutByFurcationOrder` and raise a warning. It
+    will be change to raise an error in the future.
+    """
+
+    max_furcation_order: int
+
+    def __init__(self, max_bifurcation_order: int) -> None:
+        super().__init__(max_bifurcation_order)
+
+    def __repr__(self) -> str:
+        return f"CutByBifurcationOrder-{self.max_furcation_order}"
 
 
 class CutShortTipBranch(Transform[Tree, Tree]):

swcgeom/utils/download.py

@@ -13,6 +13,7 @@ import itertools
 import logging
 import multiprocessing
 import os
+from functools import partial
 from urllib.parse import urljoin
 
 __all__ = ["download", "fetch_page", "clone_index_page"]
@@ -26,7 +27,7 @@ def download(dst: str, url: str) -> None:
     r = conn.request("GET", url)
 
     dirname = os.path.dirname(dst)
-    if not os.path.exists(dirname):
+    if dirname != "" and not os.path.exists(dirname):
         os.makedirs(dirname)
 
     with open(dst, "wb") as file:
@@ -41,7 +42,7 @@ def fetch_page(url: str):
     conn = connection_from_url(url)
     r = conn.request("GET", url)
     data = r.data.decode("utf-8")
-    return BeautifulSoup(data)
+    return BeautifulSoup(data, features="html.parser")
 
 
 def clone_index_page(
@@ -62,31 +63,35 @@ def clone_index_page(
     multiprocess : int, default `4`
         How many process are available for download.
     """
-    from urllib3.exceptions import HTTPError
-
     files = get_urls_in_index_page(index_url)
     logging.info("downloader: search `%s`, found %s files.", index_url, len(files))
 
-    def task(url: str) -> None:
-        filepath = url.removeprefix(index_url)
-        dist = os.path.join(dist_dir, filepath)
-        if os.path.exists(filepath):
-            if not override:
-                logging.info("downloader: file `%s` exits, skiped.", dist)
-                return
+    task = partial(
+        _clone_index_page, index_url=index_url, dist_dir=dist_dir, override=override
+    )
+    with multiprocessing.Pool(multiprocess) as p:
+        p.map(task, files)
 
-            logging.info("downloader: file `%s` exits, deleted.", dist)
-            os.remove(filepath)
 
-        try:
-            logging.info("downloader: downloading `%s` to `%s`", url, dist)
-            download(filepath, url)
-            logging.info("downloader: download `%s` to `%s`", url, dist)
-        except HTTPError as ex:
-            logging.info("downloader: fails to download `%s`, except `%s`", url, ex)
+def _clone_index_page(url: str, index_url: str, dist_dir: str, override: bool) -> None:
+    from urllib3.exceptions import HTTPError
 
-    with multiprocessing.Pool(multiprocess) as p:
-        p.map(task, files)
+    filepath = url.removeprefix(index_url)
+    dist = os.path.join(dist_dir, filepath)
+    if os.path.exists(dist):
+        if not override:
+            logging.info("downloader: file `%s` exits, skiped.", dist)
+            return
+
+        logging.info("downloader: file `%s` exits, deleted.", dist)
+        os.remove(dist)
+
+    try:
+        logging.info("downloader: downloading `%s` to `%s`", url, dist)
+        download(dist, url)
+        logging.info("downloader: download `%s` to `%s`", url, dist)
+    except HTTPError as ex:
+        logging.info("downloader: fails to download `%s`, except `%s`", url, ex)
 
 
 def get_urls_in_index_page(url: str) -> list[str]:
@@ -97,3 +102,21 @@ def get_urls_in_index_page(url: str) -> list[str]:
     dirs = [urljoin(url, a) for a in links if a != "../" and a.endswith("/")]
     files.extend(itertools.chain(*[get_urls_in_index_page(dir) for dir in dirs]))
     return files
+
+
+if __name__ == "__main__":
+    import argparse
+
+    parser = argparse.ArgumentParser(description="Download files from index page.")
+    parser.add_argument("url", type=str, help="URL of index page.")
+    parser.add_argument("dist", type=str, help="Directory of dist.")
+    parser.add_argument(
+        "--override", type=bool, default=False, help="Override existing file."
+    )
+    parser.add_argument(
+        "--multiprocess", type=int, default=4, help="How many process are available."
+    )
+    args = parser.parse_args()
+
+    logging.basicConfig(level=logging.INFO)
+    clone_index_page(args.url, args.dist, args.override, args.multiprocess)

swcgeom/utils/sdf.py

@@ -14,6 +14,7 @@ from collections.abc import Iterable
 
 import numpy as np
 import numpy.typing as npt
+from typing_extensions import deprecated
 
 from swcgeom.utils.solid_geometry import project_vector_on_plane
 
@@ -173,6 +174,7 @@ class SDFDifference(SDF):
         return flags
 
 
+@deprecated("Use `SDFUnion` instead")
 class SDFCompose(SDFUnion):
     """Compose multiple SDFs.
 
@@ -181,11 +183,6 @@ class SDFCompose(SDFUnion):
     """
 
     def __init__(self, sdfs: Iterable[SDF]) -> None:
-        warnings.warn(
-            "`SDFCompose` has been replace by `SDFUnion` since v0.14.0, "
-            "and will be removed in next version",
-            DeprecationWarning,
-        )
         sdfs = list(sdfs)
         if len(sdfs) == 1:
             warnings.warn("compose only one SDF, use SDFCompose.compose instead")

swcgeom/utils/transforms.py

@@ -21,7 +21,7 @@ Vec3f = tuple[float, float, float]
 
 
 def angle(a: npt.ArrayLike, b: npt.ArrayLike) -> float:
-    """Get the agnle of vectors.
+    """Get the angle of vectors.
 
     Returns
     -------

{swcgeom-0.17.1.dist-info → swcgeom-0.17.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: swcgeom
-Version: 0.17.1
+Version: 0.17.2
 Summary: Neuron geometry library for swc format
 Author-email: yzx9 <yuan.zx@outlook.com>
 License: Apache-2.0
@@ -9,25 +9,25 @@ Keywords: neuronscience,neuron,neuroanatomy,neuron-morphology
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: imagecodecs >=2023.3.16
-Requires-Dist: matplotlib >=3.5.2
-Requires-Dist: numpy >=1.22.3
-Requires-Dist: pandas >=1.4.2
-Requires-Dist: pynrrd >=1.0.0
-Requires-Dist: scipy >=1.9.1
-Requires-Dist: sdflit >=0.2.1
-Requires-Dist: seaborn >=0.12.0
-Requires-Dist: tifffile >=2022.8.12
-Requires-Dist: typing-extensions >=4.4.0
-Requires-Dist: tqdm >=4.46.1
-Requires-Dist: v3d-py-helper >=0.1.0
+Requires-Dist: imagecodecs>=2023.3.16
+Requires-Dist: matplotlib>=3.5.2
+Requires-Dist: numpy>=1.22.3
+Requires-Dist: pandas>=1.4.2
+Requires-Dist: pynrrd>=1.0.0
+Requires-Dist: scipy>=1.9.1
+Requires-Dist: sdflit>=0.2.1
+Requires-Dist: seaborn>=0.12.0
+Requires-Dist: tifffile>=2022.8.12
+Requires-Dist: typing_extensions>=4.4.0
+Requires-Dist: tqdm>=4.46.1
+Requires-Dist: v3d-py-helper==0.1.0
 Provides-Extra: all
-Requires-Dist: beautifulsoup4 >=4.11.1 ; extra == 'all'
-Requires-Dist: certifi >=2023.5.7 ; extra == 'all'
-Requires-Dist: chardet >=5.2.0 ; extra == 'all'
-Requires-Dist: lmdb >=1.4.1 ; extra == 'all'
-Requires-Dist: requests >=2.0.0 ; extra == 'all'
-Requires-Dist: urllib3 >=1.26.0 ; extra == 'all'
+Requires-Dist: beautifulsoup4>=4.11.1; extra == "all"
+Requires-Dist: certifi>=2023.5.7; extra == "all"
+Requires-Dist: chardet>=5.2.0; extra == "all"
+Requires-Dist: lmdb>=1.4.1; extra == "all"
+Requires-Dist: requests>=2.0.0; extra == "all"
+Requires-Dist: urllib3>=1.26.0; extra == "all"
 
 # SWCGEOM
 

{swcgeom-0.17.1.dist-info → swcgeom-0.17.2.dist-info}/RECORD

@@ -1,10 +1,10 @@
 swcgeom/__init__.py,sha256=z88Zwcjv-ii7c7dYd9QPg9XrUVorQjtrgGbQCsEnQhc,265
-swcgeom/_version.py,sha256=_lgKa5p_bLODIZJPNplciMDP-zYDU8I4ZC5LbeKWQ08,413
+swcgeom/_version.py,sha256=9PqbWPkwwMgdNmE4GP1v5LyzvjNYATMHB-uIEy0c_aI,413
 swcgeom/analysis/__init__.py,sha256=NurxIAyjsxjYv9rbzNf65y2sv-iBcGTmLap645hYq9Y,280
-swcgeom/analysis/feature_extractor.py,sha256=Sx9jiRWNEssFJtivrgjUSRfcVxj04KZ2AbR62PuINTU,13956
-swcgeom/analysis/features.py,sha256=7VfCadvlEDhMoLF7NqfZ4St2GGI4yZgaJ60IfUDv-7o,5959
-swcgeom/analysis/lmeasure.py,sha256=as34yoFQz-aNcM1qUpkheRH6-Otwy38Y-_1aWP_h4xs,27552
-swcgeom/analysis/sholl.py,sha256=w9c4OQYf2VIHtLZi6bXT1znmUdm-I_PVNCDeR760WIY,7236
+swcgeom/analysis/feature_extractor.py,sha256=CrOQ3hhjtuUkkYD3piFwyGnYEwd_YezJSMwBv3mPcFQ,14274
+swcgeom/analysis/features.py,sha256=7RKLVxQPiEcwjoGhM1QO84S5Kw25mMyyvPzqA5Yy2o4,6324
+swcgeom/analysis/lmeasure.py,sha256=sjFaFM4_HXSE7zgDrn3wFz9i2ySE6CtG6F4EqxxhOCU,28107
+swcgeom/analysis/sholl.py,sha256=uTse3sCCrhpCIY6GNJ0giDp7qCHCImTtWbJE7qY4D-Y,6622
 swcgeom/analysis/trunk.py,sha256=fMHnLDxm2jP_bKBM8ATbTQvBVS5G92ITbgMAm1pIK20,5566
 swcgeom/analysis/visualization.py,sha256=C18J45btqM8kikXyIEZODk4PYgAK1-9pN2Hf6j3QCzs,5635
 swcgeom/analysis/visualization3d.py,sha256=CTUcWBa2cMyDdKimMEtDBmbVzYf3-cTp-6UskPP6Erg,2513
@@ -13,41 +13,41 @@ swcgeom/core/__init__.py,sha256=BEfFBnpaKnJOBID5G5kpGcL7_E1Fj0eZZDITDVwvmRY,445
 swcgeom/core/branch.py,sha256=Jwv30pF5bfdZ7B9pl1yP2IYGczdzQtdHKYT2qNmxigE,4183
 swcgeom/core/branch_tree.py,sha256=D8Yb4sz2TniQyeUIqoYW78ZBxLFXyumPuhgmQdff0yI,1843
 swcgeom/core/compartment.py,sha256=5ZLlbsgHouwiRxtl9xLKD02IvsyjlvmIyaXG7IySAZ0,3269
-swcgeom/core/node.py,sha256=alMZENhDQ3wYg6OYElTqS3dz19_y9_C4F2Jj38MNZ3k,3340
-swcgeom/core/path.py,sha256=oS4gIW6LC--vcvCOacNzTxpmWXnxLqAusZaOc5z6t4I,4600
-swcgeom/core/population.py,sha256=DRzHMh7G6sMcmvp_zYan74Qu4N2sQ_3HXomrAMW61cA,9790
+swcgeom/core/node.py,sha256=pBk8NvKWX0OMJ8Mk9Z9I-MWqAoNEnnklnFi8yhOHiE8,3795
+swcgeom/core/path.py,sha256=Uf6N-vFGut1UxTZ7iiX4btZiWpJCWSRaPbzkVKgXCSo,4484
+swcgeom/core/population.py,sha256=U0r652W-GMEX7UkUxlqUa-oTcSgmYuKRlkoskSonAC4,10458
 swcgeom/core/swc.py,sha256=sq9-Fg5-d8Yxc2-ITu__LzN5k1hxQNkVTdmee1gpGME,6803
-swcgeom/core/tree.py,sha256=5hynlhuHFdyOmm-2R2fHHQFi5SGGLGcW5_92t1Oecak,12138
-swcgeom/core/tree_utils.py,sha256=Adxggh6tusPRAxEIcwoWbMstojZVKcgGOWPhTFJYjoM,7757
+swcgeom/core/tree.py,sha256=VcD0qWZNZW04yqF_mjSBXbZRunTp4jLcvYdL7zfX4ZM,12569
+swcgeom/core/tree_utils.py,sha256=bDz9AvYdv0y_4j1knEuudaVA2tOvevaeRaF7_6smxxs,7611
 swcgeom/core/tree_utils_impl.py,sha256=MFCrd34VZE1oSJjt9xo5L7Oyf5-ERS8ifW8zUw6isNE,1597
 swcgeom/core/swc_utils/__init__.py,sha256=qghRxjtzvq5KKfN4HhvLpZNsGPfZQu-Jj2x62_5-TbQ,575
 swcgeom/core/swc_utils/assembler.py,sha256=XtjEWz_iAOMpQzLnErCiCjbnqrbB7JA4t2-LLi2R4rQ,889
 swcgeom/core/swc_utils/base.py,sha256=CJWQioScS1L17KIJlpZMDgu68ZTCF_82nJeg25z7SRI,4731
-swcgeom/core/swc_utils/checker.py,sha256=yuLPRoSt9c7No4GGePa05kxjGFCs0zYS7oB1HadNeMI,2852
+swcgeom/core/swc_utils/checker.py,sha256=9LfKxg6-OfdfFw7JKs6Zf7dRZ8CbBykkv35U-ZyK2wk,2602
 swcgeom/core/swc_utils/io.py,sha256=xA5zvpM4gccsodKCruD-XInlC3NfvA1SgEDnqI5cjY8,6458
 swcgeom/core/swc_utils/normalizer.py,sha256=BN4UOatAo869L1EqXM8IGz0oy0bXPu9KJfZwCGz_PkM,5097
 swcgeom/core/swc_utils/subtree.py,sha256=iX0K90d4iEDdLx6NZ-4HJ-kY_NPE4XkcKn8xwXnYhQo,1988
 swcgeom/images/__init__.py,sha256=QBP1ZGGo2nWAcV7Krz-vbvW_jN4ChqXrrpoScXcUURs,96
 swcgeom/images/augmentation.py,sha256=DfSaEs57aY50O6IKDNupmLI8fHyOvNVmH8uXtdd45iQ,4167
 swcgeom/images/contrast.py,sha256=ViZVW6XI-l2sLVTODLRLtHinv_7lVgtH-xZmaw1nQLw,2160
-swcgeom/images/folder.py,sha256=-EYx_uZ4wwzoCsh9KjFsTl3Hr8aIDgfY76vi-3JeZcc,6749
-swcgeom/images/io.py,sha256=6ITCUB3wtV96UHpfSPewnbeNacBQ9WTfGc9gA8eTDNw,20669
+swcgeom/images/folder.py,sha256=BCqFmMQlUYtnaa9GvN10QR_0kEkQVwIgPJa3Sw0nxqo,6444
+swcgeom/images/io.py,sha256=gGzzdoUQ9GONfwkTIAaYrZRSUIOHVAAhLlLZ4sTkGjg,20555
 swcgeom/transforms/__init__.py,sha256=1rr4X--qY_lBi7l7_NHyvvkoWpQOQOqkioRT8I20olI,562
 swcgeom/transforms/base.py,sha256=gN5Iqi-OHkYrsjllSOdxI6Yzav3jJGoi6kUPy-38FAs,4101
 swcgeom/transforms/branch.py,sha256=R0rVti--u70IiUKyHSx6MsDYJyy6zSCf18Uia2Cmh28,5410
 swcgeom/transforms/geometry.py,sha256=XR73fO_8T7otUFIllqKOWW0OnrsXBc7yA01oDT99yMc,7385
 swcgeom/transforms/image_preprocess.py,sha256=ZVPpRoO69dmLF5K7CWsGaQJXB2G5gxdvA-FcDmfz4yQ,3662
-swcgeom/transforms/image_stack.py,sha256=Pb2AwSB_ecnd747Z2aQm5l0CcaiSO8BtHw51j_uWtc0,5789
-swcgeom/transforms/images.py,sha256=L4WSinFQsB9RJ5f2UhLlmKiEEhJtH5hlJ1DrXA_1H8Q,5735
+swcgeom/transforms/image_stack.py,sha256=iWtpL0FOfIZlE--D8qAQCScCHowCVzbTPD_4bxnNFiI,6132
+swcgeom/transforms/images.py,sha256=5kMq7VsKbBwlgVQOHP5Fyd9zWPjc1tlXis4jC4c-MB4,5558
 swcgeom/transforms/mst.py,sha256=Oc_HnaXjg5EXC7ZnOPneHX0-rXizDAEUcjq63GTj-ac,6251
 swcgeom/transforms/neurolucida_asc.py,sha256=zxXZ_LltO1BTILWGU9yZKoXbMPW6ldXpZZryYf3X6Jw,14120
 swcgeom/transforms/path.py,sha256=Gk2iunGQMX7vE83bdo8xoDO-KAT1Vvep0iZs7oFLzFQ,1089
 swcgeom/transforms/population.py,sha256=UHLjqZE1gO72p_nFHD-FSM6EFUEyfEm4v3KxHqk0O1M,808
-swcgeom/transforms/tree.py,sha256=ZddI3o7OP99tesZQxSOM8zxAYPw3MnC--khvOD3sTpU,6347
+swcgeom/transforms/tree.py,sha256=aGTrHlNnQfc8iKOFa_1KgqbNa0zA2Y6YluPNLYtPbxM,6650
 swcgeom/transforms/tree_assembler.py,sha256=juqU3moMdKhlr09fsj6FYfZV7lCjgN3bALU19trPI50,5135
 swcgeom/utils/__init__.py,sha256=LXL0wqq6-ggNweZrftp2lrNHCmVJ6LHIto3DuwlYz3c,466
 swcgeom/utils/debug.py,sha256=qay2qJpViLX82mzxdndxQFn-pi1vaEj9CbLGuGt8Y9k,465
-swcgeom/utils/download.py,sha256=By2qZezo6h1Ke_4YpSIhDgcisOrpjVqRmNzbhynC2xs,2834
+swcgeom/utils/download.py,sha256=nJ9_BXXyMdQljoZFHsC9eaina357ZuzcwITrO7azl4Y,3656
 swcgeom/utils/dsu.py,sha256=3aCbtpnl_D0OXnowTS8-kuwnCS4BKBYL5ECiFQ1fUW8,1435
 swcgeom/utils/ellipse.py,sha256=hmoaPvff1QiW6Z_QvpKgXEHYRDzjGp6eUpkOOOJStF0,3234
 swcgeom/utils/file.py,sha256=1hchQDsPgn-i-Vz5OQtcogxav_ajCQ_OaEZCLmqczRg,2515
@@ -56,12 +56,12 @@ swcgeom/utils/numpy_helper.py,sha256=xuvXpZgP-ZeuwTvPFD3DIxwJ5BK4fMCU7k5_5fUHaWE
 swcgeom/utils/plotter_2d.py,sha256=743BPwx4hpxNsIdUmjOnL6iuln4-pf2xyuGbQFYIts0,3869
 swcgeom/utils/plotter_3d.py,sha256=EPB1BPyhJZD5IMarJrV-fvpclu1XjAJNZTDZCsUx7ZM,863
 swcgeom/utils/renderer.py,sha256=3fjs9L_c6nJ1-pQzGT7meD0-XHZeKeW0WWqBfMx9c1s,4220
-swcgeom/utils/sdf.py,sha256=64o-Nm2-x759-n5sEMIsYg4GW61l2krsEmcNkD8TkPQ,10686
+swcgeom/utils/sdf.py,sha256=D7RmbBV65ofMWLIEWiTvpBUflnZEsGIh-ncZCWqMun8,10575
 swcgeom/utils/solid_geometry.py,sha256=Dn8b4A6TnM--EMoMVDPBSuOA_nworvbZL9gbm6EGMTY,2399
-swcgeom/utils/transforms.py,sha256=wwNNkMZz3Bsac3Dx2B_k8M0tEgd_QKKd4VWFTOsxoD4,6957
+swcgeom/utils/transforms.py,sha256=rzxuQFBKKRfLNEyYv9h7TfiOyRAouq-J0ZseKq71WYs,6957
 swcgeom/utils/volumetric_object.py,sha256=213DCz-d99ZwEZJv6SLKb0Nkj9uo5oOBnPsG50Miwz8,15102
-swcgeom-0.17.1.dist-info/LICENSE,sha256=JPtohhZ4XURqoKI0ZqnMYb7dobCOoZR_n5EpnaLTp3E,11344
-swcgeom-0.17.1.dist-info/METADATA,sha256=kKscYNeLYexfe30yFy4tzF_TrmoTJ1Hz0zYPM7dp_z4,2332
-swcgeom-0.17.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-swcgeom-0.17.1.dist-info/top_level.txt,sha256=hmLyUXWS61Gxl07haswFEKKefYPBVJYlUlol8ghNkjY,8
-swcgeom-0.17.1.dist-info/RECORD,,
+swcgeom-0.17.2.dist-info/LICENSE,sha256=JPtohhZ4XURqoKI0ZqnMYb7dobCOoZR_n5EpnaLTp3E,11344
+swcgeom-0.17.2.dist-info/METADATA,sha256=bgTVJ7LDFnrx2mpT-59qT8m6c2C4sgdVoQIcFS4br38,2308
+swcgeom-0.17.2.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+swcgeom-0.17.2.dist-info/top_level.txt,sha256=hmLyUXWS61Gxl07haswFEKKefYPBVJYlUlol8ghNkjY,8
+swcgeom-0.17.2.dist-info/RECORD,,

{swcgeom-0.17.1.dist-info → swcgeom-0.17.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (75.6.0)
 Root-Is-Purelib: true
 Tag: py3-none-any